Multiple sequence alignment - TraesCS4A01G176200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G176200 chr4A 100.000 4851 0 0 1 4851 447776037 447780887 0.000000e+00 8959.0
1 TraesCS4A01G176200 chr4A 74.798 619 115 26 1816 2430 579372448 579371867 1.740000e-59 241.0
2 TraesCS4A01G176200 chr4A 95.161 62 2 1 3954 4015 689656564 689656504 4.000000e-16 97.1
3 TraesCS4A01G176200 chr4D 94.455 4527 160 23 357 4851 122304313 122299846 0.000000e+00 6885.0
4 TraesCS4A01G176200 chr4D 92.238 773 35 5 3766 4535 247161255 247162005 0.000000e+00 1072.0
5 TraesCS4A01G176200 chr4D 85.714 105 14 1 3827 3930 508528897 508528793 5.130000e-20 110.0
6 TraesCS4A01G176200 chr4B 94.598 3684 126 14 357 3998 186610020 186606368 0.000000e+00 5633.0
7 TraesCS4A01G176200 chr4B 90.431 209 13 3 4647 4851 186605795 186605590 8.000000e-68 268.0
8 TraesCS4A01G176200 chr4B 81.230 309 31 12 4080 4388 186606342 186606061 1.760000e-54 224.0
9 TraesCS4A01G176200 chr4B 91.339 127 9 2 71 195 597139211 597139085 6.460000e-39 172.0
10 TraesCS4A01G176200 chrUn 93.540 774 35 6 3764 4535 1734651 1735411 0.000000e+00 1138.0
11 TraesCS4A01G176200 chr7A 75.344 1598 340 38 1813 3395 127607941 127609499 0.000000e+00 719.0
12 TraesCS4A01G176200 chr7A 85.859 198 19 6 1050 1247 127607280 127607468 8.230000e-48 202.0
13 TraesCS4A01G176200 chr7D 75.016 1573 352 25 1816 3381 126506757 126505219 0.000000e+00 689.0
14 TraesCS4A01G176200 chr7D 75.201 621 109 22 1816 2430 88363062 88362481 8.060000e-63 252.0
15 TraesCS4A01G176200 chr7D 84.848 198 21 6 1050 1247 126681707 126681895 1.780000e-44 191.0
16 TraesCS4A01G176200 chr7B 74.937 1584 351 32 1817 3395 88245916 88247458 0.000000e+00 684.0
17 TraesCS4A01G176200 chr7B 84.804 204 22 6 1043 1246 88245271 88245465 3.830000e-46 196.0
18 TraesCS4A01G176200 chr7B 83.838 198 23 6 1050 1247 87174357 87174169 3.860000e-41 180.0
19 TraesCS4A01G176200 chr3B 92.637 421 30 1 3579 3998 810362193 810361773 5.370000e-169 604.0
20 TraesCS4A01G176200 chr3B 87.251 502 51 4 1114 1606 71265542 71265045 1.180000e-155 560.0
21 TraesCS4A01G176200 chr3B 87.078 503 48 5 1114 1603 52169325 52169823 1.970000e-153 553.0
22 TraesCS4A01G176200 chr3B 75.081 618 109 21 1813 2424 419312406 419312984 3.750000e-61 246.0
23 TraesCS4A01G176200 chr3B 78.351 97 14 4 1278 1369 245902262 245902356 6.780000e-04 56.5
24 TraesCS4A01G176200 chr5B 88.377 499 45 5 1114 1603 466422526 466423020 5.410000e-164 588.0
25 TraesCS4A01G176200 chr6B 91.456 316 26 1 3869 4184 17991723 17991409 2.680000e-117 433.0
26 TraesCS4A01G176200 chr1A 93.970 199 10 2 4339 4535 568949158 568949356 2.840000e-77 300.0
27 TraesCS4A01G176200 chr5D 75.081 618 113 24 1816 2430 457998916 457998337 2.900000e-62 250.0
28 TraesCS4A01G176200 chr6D 85.714 189 21 3 3996 4184 9868139 9868321 1.380000e-45 195.0
29 TraesCS4A01G176200 chr5A 97.321 112 2 1 71 182 462534554 462534664 6.410000e-44 189.0
30 TraesCS4A01G176200 chr3A 95.690 116 5 0 75 190 70862685 70862570 2.310000e-43 187.0
31 TraesCS4A01G176200 chr2B 92.188 128 8 2 71 196 579076252 579076125 3.860000e-41 180.0
32 TraesCS4A01G176200 chr1B 91.935 124 10 0 71 194 659332898 659332775 1.790000e-39 174.0
33 TraesCS4A01G176200 chr1B 91.339 127 9 2 71 195 577761744 577761618 6.460000e-39 172.0
34 TraesCS4A01G176200 chr3D 91.339 127 9 2 71 195 417894341 417894467 6.460000e-39 172.0
35 TraesCS4A01G176200 chr2A 89.706 136 8 6 65 195 646728256 646728390 8.350000e-38 169.0
36 TraesCS4A01G176200 chr2A 88.194 144 11 6 50 191 180979285 180979146 3.000000e-37 167.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G176200 chr4A 447776037 447780887 4850 False 8959.000000 8959 100.0000 1 4851 1 chr4A.!!$F1 4850
1 TraesCS4A01G176200 chr4A 579371867 579372448 581 True 241.000000 241 74.7980 1816 2430 1 chr4A.!!$R1 614
2 TraesCS4A01G176200 chr4D 122299846 122304313 4467 True 6885.000000 6885 94.4550 357 4851 1 chr4D.!!$R1 4494
3 TraesCS4A01G176200 chr4D 247161255 247162005 750 False 1072.000000 1072 92.2380 3766 4535 1 chr4D.!!$F1 769
4 TraesCS4A01G176200 chr4B 186605590 186610020 4430 True 2041.666667 5633 88.7530 357 4851 3 chr4B.!!$R2 4494
5 TraesCS4A01G176200 chrUn 1734651 1735411 760 False 1138.000000 1138 93.5400 3764 4535 1 chrUn.!!$F1 771
6 TraesCS4A01G176200 chr7A 127607280 127609499 2219 False 460.500000 719 80.6015 1050 3395 2 chr7A.!!$F1 2345
7 TraesCS4A01G176200 chr7D 126505219 126506757 1538 True 689.000000 689 75.0160 1816 3381 1 chr7D.!!$R2 1565
8 TraesCS4A01G176200 chr7D 88362481 88363062 581 True 252.000000 252 75.2010 1816 2430 1 chr7D.!!$R1 614
9 TraesCS4A01G176200 chr7B 88245271 88247458 2187 False 440.000000 684 79.8705 1043 3395 2 chr7B.!!$F1 2352
10 TraesCS4A01G176200 chr3B 419312406 419312984 578 False 246.000000 246 75.0810 1813 2424 1 chr3B.!!$F3 611
11 TraesCS4A01G176200 chr5D 457998337 457998916 579 True 250.000000 250 75.0810 1816 2430 1 chr5D.!!$R1 614

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
583 588 0.037877 GCTCCCCTGATGGATGGATG 59.962 60.0 0.0 0.0 35.39 3.51 F
1411 1487 0.036875 CAACTCCACCTCCTGTTCCC 59.963 60.0 0.0 0.0 0.00 3.97 F
1671 1774 0.518636 GCATTCAGAGCTTTGCGACA 59.481 50.0 0.0 0.0 0.00 4.35 F
3161 3293 0.035152 AATGTCATTGCCTGCGAGGA 60.035 50.0 0.0 0.0 37.67 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1944 2060 0.391793 CCGCCTCCTCCTTCTTCAAC 60.392 60.000 0.00 0.0 0.00 3.18 R
3161 3293 1.368950 CGATCCACCCGATCTGCAT 59.631 57.895 0.00 0.0 44.66 3.96 R
3540 3672 4.563140 TCTACCATAAAAGTTTCGCCCT 57.437 40.909 0.00 0.0 0.00 5.19 R
4023 4157 0.605589 GGAAACCAGGGTTCTCCACG 60.606 60.000 17.24 0.0 37.35 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 7.878547 AAATTCATTTGGTTGGTGATTTTGT 57.121 28.000 0.00 0.00 29.46 2.83
45 46 6.864360 ATTCATTTGGTTGGTGATTTTGTG 57.136 33.333 0.00 0.00 0.00 3.33
46 47 5.604758 TCATTTGGTTGGTGATTTTGTGA 57.395 34.783 0.00 0.00 0.00 3.58
47 48 6.172136 TCATTTGGTTGGTGATTTTGTGAT 57.828 33.333 0.00 0.00 0.00 3.06
48 49 6.590068 TCATTTGGTTGGTGATTTTGTGATT 58.410 32.000 0.00 0.00 0.00 2.57
49 50 7.052873 TCATTTGGTTGGTGATTTTGTGATTT 58.947 30.769 0.00 0.00 0.00 2.17
50 51 7.555554 TCATTTGGTTGGTGATTTTGTGATTTT 59.444 29.630 0.00 0.00 0.00 1.82
51 52 7.693969 TTTGGTTGGTGATTTTGTGATTTTT 57.306 28.000 0.00 0.00 0.00 1.94
52 53 8.792830 TTTGGTTGGTGATTTTGTGATTTTTA 57.207 26.923 0.00 0.00 0.00 1.52
53 54 7.778470 TGGTTGGTGATTTTGTGATTTTTAC 57.222 32.000 0.00 0.00 0.00 2.01
54 55 7.560368 TGGTTGGTGATTTTGTGATTTTTACT 58.440 30.769 0.00 0.00 0.00 2.24
55 56 8.043710 TGGTTGGTGATTTTGTGATTTTTACTT 58.956 29.630 0.00 0.00 0.00 2.24
56 57 9.535878 GGTTGGTGATTTTGTGATTTTTACTTA 57.464 29.630 0.00 0.00 0.00 2.24
80 81 7.923414 ATTTGGACTCAAAGTATGTACTTCC 57.077 36.000 5.93 3.94 45.17 3.46
81 82 6.681729 TTGGACTCAAAGTATGTACTTCCT 57.318 37.500 5.93 0.00 45.17 3.36
82 83 6.282199 TGGACTCAAAGTATGTACTTCCTC 57.718 41.667 5.93 0.22 45.17 3.71
83 84 6.017192 TGGACTCAAAGTATGTACTTCCTCT 58.983 40.000 5.93 0.00 45.17 3.69
84 85 6.071334 TGGACTCAAAGTATGTACTTCCTCTG 60.071 42.308 5.93 1.89 45.17 3.35
85 86 6.071278 GGACTCAAAGTATGTACTTCCTCTGT 60.071 42.308 5.93 2.59 45.17 3.41
86 87 7.304497 ACTCAAAGTATGTACTTCCTCTGTT 57.696 36.000 5.93 0.00 45.17 3.16
87 88 7.379750 ACTCAAAGTATGTACTTCCTCTGTTC 58.620 38.462 5.93 0.00 45.17 3.18
88 89 7.015292 ACTCAAAGTATGTACTTCCTCTGTTCA 59.985 37.037 5.93 0.00 45.17 3.18
89 90 7.152645 TCAAAGTATGTACTTCCTCTGTTCAC 58.847 38.462 5.93 0.00 45.17 3.18
90 91 6.919775 AAGTATGTACTTCCTCTGTTCACT 57.080 37.500 0.00 0.00 42.52 3.41
91 92 6.919775 AGTATGTACTTCCTCTGTTCACTT 57.080 37.500 0.00 0.00 31.13 3.16
92 93 7.304497 AGTATGTACTTCCTCTGTTCACTTT 57.696 36.000 0.00 0.00 31.13 2.66
93 94 7.736893 AGTATGTACTTCCTCTGTTCACTTTT 58.263 34.615 0.00 0.00 31.13 2.27
94 95 8.867097 AGTATGTACTTCCTCTGTTCACTTTTA 58.133 33.333 0.00 0.00 31.13 1.52
95 96 9.654663 GTATGTACTTCCTCTGTTCACTTTTAT 57.345 33.333 0.00 0.00 0.00 1.40
98 99 9.706691 TGTACTTCCTCTGTTCACTTTTATAAG 57.293 33.333 0.00 0.00 37.40 1.73
99 100 9.924650 GTACTTCCTCTGTTCACTTTTATAAGA 57.075 33.333 0.00 0.00 35.30 2.10
100 101 8.834749 ACTTCCTCTGTTCACTTTTATAAGAC 57.165 34.615 0.00 0.00 35.30 3.01
101 102 7.878644 ACTTCCTCTGTTCACTTTTATAAGACC 59.121 37.037 0.00 0.00 35.30 3.85
102 103 7.554959 TCCTCTGTTCACTTTTATAAGACCT 57.445 36.000 0.00 0.00 35.30 3.85
103 104 7.974504 TCCTCTGTTCACTTTTATAAGACCTT 58.025 34.615 0.00 0.00 35.30 3.50
104 105 7.878127 TCCTCTGTTCACTTTTATAAGACCTTG 59.122 37.037 0.00 0.00 35.30 3.61
105 106 7.878127 CCTCTGTTCACTTTTATAAGACCTTGA 59.122 37.037 0.00 0.00 35.30 3.02
106 107 9.273016 CTCTGTTCACTTTTATAAGACCTTGAA 57.727 33.333 0.00 0.00 35.30 2.69
107 108 9.273016 TCTGTTCACTTTTATAAGACCTTGAAG 57.727 33.333 0.00 0.00 35.30 3.02
108 109 9.273016 CTGTTCACTTTTATAAGACCTTGAAGA 57.727 33.333 0.00 0.00 35.30 2.87
109 110 9.052759 TGTTCACTTTTATAAGACCTTGAAGAC 57.947 33.333 0.00 0.00 35.30 3.01
110 111 9.052759 GTTCACTTTTATAAGACCTTGAAGACA 57.947 33.333 0.00 0.00 35.30 3.41
111 112 9.793259 TTCACTTTTATAAGACCTTGAAGACAT 57.207 29.630 0.00 0.00 35.30 3.06
112 113 9.793259 TCACTTTTATAAGACCTTGAAGACATT 57.207 29.630 0.00 0.00 35.30 2.71
118 119 7.913674 ATAAGACCTTGAAGACATTTCAGAC 57.086 36.000 0.00 0.00 0.00 3.51
119 120 5.296151 AGACCTTGAAGACATTTCAGACA 57.704 39.130 0.00 0.00 0.00 3.41
120 121 5.684704 AGACCTTGAAGACATTTCAGACAA 58.315 37.500 0.00 0.00 0.00 3.18
121 122 6.302269 AGACCTTGAAGACATTTCAGACAAT 58.698 36.000 0.00 0.00 0.00 2.71
122 123 6.206243 AGACCTTGAAGACATTTCAGACAATG 59.794 38.462 0.00 0.00 39.67 2.82
124 125 6.998074 ACCTTGAAGACATTTCAGACAATGTA 59.002 34.615 9.58 0.00 45.55 2.29
125 126 7.667219 ACCTTGAAGACATTTCAGACAATGTAT 59.333 33.333 9.58 5.75 45.55 2.29
126 127 9.166173 CCTTGAAGACATTTCAGACAATGTATA 57.834 33.333 9.58 0.00 45.55 1.47
135 136 9.683069 CATTTCAGACAATGTATAAAATAGCCC 57.317 33.333 0.00 0.00 30.60 5.19
136 137 8.815565 TTTCAGACAATGTATAAAATAGCCCA 57.184 30.769 0.00 0.00 0.00 5.36
137 138 8.995027 TTCAGACAATGTATAAAATAGCCCAT 57.005 30.769 0.00 0.00 0.00 4.00
138 139 8.995027 TCAGACAATGTATAAAATAGCCCATT 57.005 30.769 0.00 0.00 0.00 3.16
139 140 9.420118 TCAGACAATGTATAAAATAGCCCATTT 57.580 29.630 0.00 0.00 38.54 2.32
151 152 7.775053 AAATAGCCCATTTAAAGTTGTCTGA 57.225 32.000 0.00 0.00 34.99 3.27
152 153 7.775053 AATAGCCCATTTAAAGTTGTCTGAA 57.225 32.000 0.00 0.00 0.00 3.02
153 154 7.775053 ATAGCCCATTTAAAGTTGTCTGAAA 57.225 32.000 0.00 0.00 0.00 2.69
154 155 6.670695 AGCCCATTTAAAGTTGTCTGAAAT 57.329 33.333 0.00 0.00 0.00 2.17
155 156 6.458210 AGCCCATTTAAAGTTGTCTGAAATG 58.542 36.000 0.00 0.00 37.45 2.32
156 157 6.267471 AGCCCATTTAAAGTTGTCTGAAATGA 59.733 34.615 7.11 0.00 38.60 2.57
157 158 6.366061 GCCCATTTAAAGTTGTCTGAAATGAC 59.634 38.462 7.11 0.00 38.60 3.06
158 159 7.661040 CCCATTTAAAGTTGTCTGAAATGACT 58.339 34.615 7.11 0.00 38.60 3.41
159 160 8.143835 CCCATTTAAAGTTGTCTGAAATGACTT 58.856 33.333 7.11 0.00 38.60 3.01
166 167 9.573133 AAAGTTGTCTGAAATGACTTACAAAAG 57.427 29.630 0.00 0.00 37.79 2.27
168 169 8.184192 AGTTGTCTGAAATGACTTACAAAAGTG 58.816 33.333 0.00 0.00 46.09 3.16
169 170 7.857734 TGTCTGAAATGACTTACAAAAGTGA 57.142 32.000 0.00 0.00 46.09 3.41
170 171 8.275015 TGTCTGAAATGACTTACAAAAGTGAA 57.725 30.769 0.00 0.00 46.09 3.18
171 172 8.181573 TGTCTGAAATGACTTACAAAAGTGAAC 58.818 33.333 0.00 0.00 46.09 3.18
172 173 7.373441 GTCTGAAATGACTTACAAAAGTGAACG 59.627 37.037 0.00 0.00 46.09 3.95
173 174 6.491394 TGAAATGACTTACAAAAGTGAACGG 58.509 36.000 0.00 0.00 46.09 4.44
174 175 6.316640 TGAAATGACTTACAAAAGTGAACGGA 59.683 34.615 0.00 0.00 46.09 4.69
175 176 5.924475 ATGACTTACAAAAGTGAACGGAG 57.076 39.130 0.00 0.00 46.09 4.63
176 177 4.124238 TGACTTACAAAAGTGAACGGAGG 58.876 43.478 0.00 0.00 46.09 4.30
177 178 3.473625 ACTTACAAAAGTGAACGGAGGG 58.526 45.455 0.00 0.00 44.40 4.30
178 179 3.135167 ACTTACAAAAGTGAACGGAGGGA 59.865 43.478 0.00 0.00 44.40 4.20
179 180 2.256117 ACAAAAGTGAACGGAGGGAG 57.744 50.000 0.00 0.00 0.00 4.30
180 181 1.489230 ACAAAAGTGAACGGAGGGAGT 59.511 47.619 0.00 0.00 0.00 3.85
181 182 2.701951 ACAAAAGTGAACGGAGGGAGTA 59.298 45.455 0.00 0.00 0.00 2.59
182 183 3.135167 ACAAAAGTGAACGGAGGGAGTAA 59.865 43.478 0.00 0.00 0.00 2.24
183 184 3.397849 AAAGTGAACGGAGGGAGTAAC 57.602 47.619 0.00 0.00 0.00 2.50
184 185 2.305858 AGTGAACGGAGGGAGTAACT 57.694 50.000 0.00 0.00 0.00 2.24
185 186 2.606378 AGTGAACGGAGGGAGTAACTT 58.394 47.619 0.00 0.00 0.00 2.66
186 187 3.771216 AGTGAACGGAGGGAGTAACTTA 58.229 45.455 0.00 0.00 0.00 2.24
187 188 4.351127 AGTGAACGGAGGGAGTAACTTAT 58.649 43.478 0.00 0.00 0.00 1.73
188 189 4.776308 AGTGAACGGAGGGAGTAACTTATT 59.224 41.667 0.00 0.00 0.00 1.40
189 190 5.247792 AGTGAACGGAGGGAGTAACTTATTT 59.752 40.000 0.00 0.00 0.00 1.40
190 191 5.350640 GTGAACGGAGGGAGTAACTTATTTG 59.649 44.000 0.00 0.00 0.00 2.32
191 192 5.246656 TGAACGGAGGGAGTAACTTATTTGA 59.753 40.000 0.00 0.00 0.00 2.69
192 193 5.750352 ACGGAGGGAGTAACTTATTTGAA 57.250 39.130 0.00 0.00 0.00 2.69
193 194 6.309389 ACGGAGGGAGTAACTTATTTGAAT 57.691 37.500 0.00 0.00 0.00 2.57
194 195 6.113411 ACGGAGGGAGTAACTTATTTGAATG 58.887 40.000 0.00 0.00 0.00 2.67
195 196 6.113411 CGGAGGGAGTAACTTATTTGAATGT 58.887 40.000 0.00 0.00 0.00 2.71
196 197 7.093201 ACGGAGGGAGTAACTTATTTGAATGTA 60.093 37.037 0.00 0.00 0.00 2.29
197 198 7.438459 CGGAGGGAGTAACTTATTTGAATGTAG 59.562 40.741 0.00 0.00 0.00 2.74
198 199 8.483758 GGAGGGAGTAACTTATTTGAATGTAGA 58.516 37.037 0.00 0.00 0.00 2.59
199 200 9.315525 GAGGGAGTAACTTATTTGAATGTAGAC 57.684 37.037 0.00 0.00 0.00 2.59
200 201 9.047947 AGGGAGTAACTTATTTGAATGTAGACT 57.952 33.333 0.00 0.00 0.00 3.24
208 209 9.302345 ACTTATTTGAATGTAGACTATGTGACG 57.698 33.333 0.00 0.00 0.00 4.35
209 210 6.589830 ATTTGAATGTAGACTATGTGACGC 57.410 37.500 0.00 0.00 0.00 5.19
210 211 4.983671 TGAATGTAGACTATGTGACGCT 57.016 40.909 0.00 0.00 0.00 5.07
211 212 5.324784 TGAATGTAGACTATGTGACGCTT 57.675 39.130 0.00 0.00 0.00 4.68
212 213 5.720202 TGAATGTAGACTATGTGACGCTTT 58.280 37.500 0.00 0.00 0.00 3.51
213 214 6.163476 TGAATGTAGACTATGTGACGCTTTT 58.837 36.000 0.00 0.00 0.00 2.27
214 215 6.649141 TGAATGTAGACTATGTGACGCTTTTT 59.351 34.615 0.00 0.00 0.00 1.94
215 216 5.839262 TGTAGACTATGTGACGCTTTTTG 57.161 39.130 0.00 0.00 0.00 2.44
216 217 5.294356 TGTAGACTATGTGACGCTTTTTGT 58.706 37.500 0.00 0.00 0.00 2.83
217 218 5.756347 TGTAGACTATGTGACGCTTTTTGTT 59.244 36.000 0.00 0.00 0.00 2.83
218 219 5.751243 AGACTATGTGACGCTTTTTGTTT 57.249 34.783 0.00 0.00 0.00 2.83
219 220 6.854496 AGACTATGTGACGCTTTTTGTTTA 57.146 33.333 0.00 0.00 0.00 2.01
220 221 7.435068 AGACTATGTGACGCTTTTTGTTTAT 57.565 32.000 0.00 0.00 0.00 1.40
221 222 7.871853 AGACTATGTGACGCTTTTTGTTTATT 58.128 30.769 0.00 0.00 0.00 1.40
222 223 8.015658 AGACTATGTGACGCTTTTTGTTTATTC 58.984 33.333 0.00 0.00 0.00 1.75
223 224 7.081976 ACTATGTGACGCTTTTTGTTTATTCC 58.918 34.615 0.00 0.00 0.00 3.01
224 225 5.250235 TGTGACGCTTTTTGTTTATTCCA 57.750 34.783 0.00 0.00 0.00 3.53
225 226 5.651530 TGTGACGCTTTTTGTTTATTCCAA 58.348 33.333 0.00 0.00 0.00 3.53
226 227 6.276847 TGTGACGCTTTTTGTTTATTCCAAT 58.723 32.000 0.00 0.00 0.00 3.16
227 228 6.419413 TGTGACGCTTTTTGTTTATTCCAATC 59.581 34.615 0.00 0.00 0.00 2.67
228 229 6.419413 GTGACGCTTTTTGTTTATTCCAATCA 59.581 34.615 0.00 0.00 0.00 2.57
229 230 6.980978 TGACGCTTTTTGTTTATTCCAATCAA 59.019 30.769 0.00 0.00 0.00 2.57
230 231 7.168972 TGACGCTTTTTGTTTATTCCAATCAAG 59.831 33.333 0.00 0.00 0.00 3.02
231 232 7.206687 ACGCTTTTTGTTTATTCCAATCAAGA 58.793 30.769 0.00 0.00 0.00 3.02
232 233 7.169140 ACGCTTTTTGTTTATTCCAATCAAGAC 59.831 33.333 0.00 0.00 0.00 3.01
233 234 7.382218 CGCTTTTTGTTTATTCCAATCAAGACT 59.618 33.333 0.00 0.00 0.00 3.24
234 235 8.490355 GCTTTTTGTTTATTCCAATCAAGACTG 58.510 33.333 0.00 0.00 0.00 3.51
235 236 9.533253 CTTTTTGTTTATTCCAATCAAGACTGT 57.467 29.630 0.00 0.00 0.00 3.55
239 240 9.513906 TTGTTTATTCCAATCAAGACTGTATGA 57.486 29.630 0.00 0.00 0.00 2.15
240 241 9.513906 TGTTTATTCCAATCAAGACTGTATGAA 57.486 29.630 0.60 0.00 0.00 2.57
245 246 7.395190 TCCAATCAAGACTGTATGAAAATGG 57.605 36.000 13.71 13.71 33.06 3.16
246 247 6.038356 CCAATCAAGACTGTATGAAAATGGC 58.962 40.000 0.60 0.00 0.00 4.40
247 248 5.841957 ATCAAGACTGTATGAAAATGGCC 57.158 39.130 0.00 0.00 0.00 5.36
248 249 4.661222 TCAAGACTGTATGAAAATGGCCA 58.339 39.130 8.56 8.56 0.00 5.36
249 250 5.076182 TCAAGACTGTATGAAAATGGCCAA 58.924 37.500 10.96 0.00 0.00 4.52
250 251 5.538053 TCAAGACTGTATGAAAATGGCCAAA 59.462 36.000 10.96 0.00 0.00 3.28
251 252 6.211184 TCAAGACTGTATGAAAATGGCCAAAT 59.789 34.615 10.96 0.00 0.00 2.32
252 253 6.610075 AGACTGTATGAAAATGGCCAAATT 57.390 33.333 10.96 8.01 0.00 1.82
253 254 6.400568 AGACTGTATGAAAATGGCCAAATTG 58.599 36.000 10.96 0.00 0.00 2.32
254 255 6.211184 AGACTGTATGAAAATGGCCAAATTGA 59.789 34.615 10.96 1.81 0.00 2.57
255 256 6.949715 ACTGTATGAAAATGGCCAAATTGAT 58.050 32.000 10.96 10.31 0.00 2.57
256 257 8.076910 ACTGTATGAAAATGGCCAAATTGATA 57.923 30.769 10.96 9.23 0.00 2.15
257 258 8.538701 ACTGTATGAAAATGGCCAAATTGATAA 58.461 29.630 10.96 3.04 0.00 1.75
258 259 9.381033 CTGTATGAAAATGGCCAAATTGATAAA 57.619 29.630 10.96 6.30 0.00 1.40
259 260 9.902684 TGTATGAAAATGGCCAAATTGATAAAT 57.097 25.926 10.96 0.00 0.00 1.40
262 263 8.859236 TGAAAATGGCCAAATTGATAAATTGA 57.141 26.923 10.96 0.00 0.00 2.57
263 264 9.463902 TGAAAATGGCCAAATTGATAAATTGAT 57.536 25.926 10.96 0.00 0.00 2.57
267 268 9.902684 AATGGCCAAATTGATAAATTGATTACA 57.097 25.926 10.96 0.00 0.00 2.41
268 269 8.715191 TGGCCAAATTGATAAATTGATTACAC 57.285 30.769 0.61 0.00 0.00 2.90
269 270 8.316946 TGGCCAAATTGATAAATTGATTACACA 58.683 29.630 0.61 0.00 0.00 3.72
270 271 9.328845 GGCCAAATTGATAAATTGATTACACAT 57.671 29.630 0.00 0.00 0.00 3.21
281 282 8.970691 AAATTGATTACACATACAGTCAAAGC 57.029 30.769 0.00 0.00 0.00 3.51
282 283 7.686438 ATTGATTACACATACAGTCAAAGCA 57.314 32.000 0.00 0.00 0.00 3.91
283 284 6.726258 TGATTACACATACAGTCAAAGCAG 57.274 37.500 0.00 0.00 0.00 4.24
284 285 6.463360 TGATTACACATACAGTCAAAGCAGA 58.537 36.000 0.00 0.00 0.00 4.26
285 286 6.368791 TGATTACACATACAGTCAAAGCAGAC 59.631 38.462 0.00 0.00 38.81 3.51
286 287 3.403038 ACACATACAGTCAAAGCAGACC 58.597 45.455 1.03 0.00 39.34 3.85
287 288 3.181455 ACACATACAGTCAAAGCAGACCA 60.181 43.478 1.03 0.00 39.34 4.02
288 289 3.814842 CACATACAGTCAAAGCAGACCAA 59.185 43.478 1.03 0.00 39.34 3.67
289 290 4.275689 CACATACAGTCAAAGCAGACCAAA 59.724 41.667 1.03 0.00 39.34 3.28
290 291 5.048504 CACATACAGTCAAAGCAGACCAAAT 60.049 40.000 1.03 0.00 39.34 2.32
291 292 3.996150 ACAGTCAAAGCAGACCAAATG 57.004 42.857 1.03 0.00 39.34 2.32
292 293 3.554934 ACAGTCAAAGCAGACCAAATGA 58.445 40.909 1.03 0.00 39.34 2.57
293 294 3.953612 ACAGTCAAAGCAGACCAAATGAA 59.046 39.130 1.03 0.00 39.34 2.57
294 295 4.586001 ACAGTCAAAGCAGACCAAATGAAT 59.414 37.500 1.03 0.00 39.34 2.57
295 296 5.159209 CAGTCAAAGCAGACCAAATGAATC 58.841 41.667 1.03 0.00 39.34 2.52
296 297 4.083110 AGTCAAAGCAGACCAAATGAATCG 60.083 41.667 1.03 0.00 39.34 3.34
297 298 2.919229 CAAAGCAGACCAAATGAATCGC 59.081 45.455 0.00 0.00 0.00 4.58
298 299 1.098050 AGCAGACCAAATGAATCGCC 58.902 50.000 0.00 0.00 0.00 5.54
299 300 0.101219 GCAGACCAAATGAATCGCCC 59.899 55.000 0.00 0.00 0.00 6.13
300 301 0.740737 CAGACCAAATGAATCGCCCC 59.259 55.000 0.00 0.00 0.00 5.80
301 302 0.748005 AGACCAAATGAATCGCCCCG 60.748 55.000 0.00 0.00 0.00 5.73
302 303 1.001393 ACCAAATGAATCGCCCCGT 60.001 52.632 0.00 0.00 0.00 5.28
303 304 1.312371 ACCAAATGAATCGCCCCGTG 61.312 55.000 0.00 0.00 0.00 4.94
304 305 1.312371 CCAAATGAATCGCCCCGTGT 61.312 55.000 0.00 0.00 0.00 4.49
305 306 1.374560 CAAATGAATCGCCCCGTGTA 58.625 50.000 0.00 0.00 0.00 2.90
306 307 1.946768 CAAATGAATCGCCCCGTGTAT 59.053 47.619 0.00 0.00 0.00 2.29
307 308 1.878953 AATGAATCGCCCCGTGTATC 58.121 50.000 0.00 0.00 0.00 2.24
308 309 0.756294 ATGAATCGCCCCGTGTATCA 59.244 50.000 0.00 0.00 0.00 2.15
309 310 0.179094 TGAATCGCCCCGTGTATCAC 60.179 55.000 0.00 0.00 0.00 3.06
324 325 6.749216 GTGTATCACGTATCATGAAATCGT 57.251 37.500 14.29 14.29 35.12 3.73
325 326 6.798214 GTGTATCACGTATCATGAAATCGTC 58.202 40.000 16.25 8.98 32.47 4.20
326 327 6.637254 GTGTATCACGTATCATGAAATCGTCT 59.363 38.462 16.25 11.22 32.47 4.18
327 328 6.636850 TGTATCACGTATCATGAAATCGTCTG 59.363 38.462 16.25 9.56 32.47 3.51
328 329 4.993905 TCACGTATCATGAAATCGTCTGT 58.006 39.130 16.25 0.00 32.47 3.41
329 330 5.034797 TCACGTATCATGAAATCGTCTGTC 58.965 41.667 16.25 0.00 32.47 3.51
330 331 4.207224 CACGTATCATGAAATCGTCTGTCC 59.793 45.833 16.25 0.00 32.47 4.02
331 332 4.142249 ACGTATCATGAAATCGTCTGTCCA 60.142 41.667 14.29 0.00 0.00 4.02
332 333 4.984785 CGTATCATGAAATCGTCTGTCCAT 59.015 41.667 0.00 0.00 0.00 3.41
333 334 5.463392 CGTATCATGAAATCGTCTGTCCATT 59.537 40.000 0.00 0.00 0.00 3.16
334 335 5.746307 ATCATGAAATCGTCTGTCCATTG 57.254 39.130 0.00 0.00 0.00 2.82
335 336 4.831107 TCATGAAATCGTCTGTCCATTGA 58.169 39.130 0.00 0.00 0.00 2.57
336 337 5.244755 TCATGAAATCGTCTGTCCATTGAA 58.755 37.500 0.00 0.00 0.00 2.69
337 338 5.882000 TCATGAAATCGTCTGTCCATTGAAT 59.118 36.000 0.00 0.00 0.00 2.57
338 339 5.801350 TGAAATCGTCTGTCCATTGAATC 57.199 39.130 0.00 0.00 0.00 2.52
339 340 5.244755 TGAAATCGTCTGTCCATTGAATCA 58.755 37.500 0.00 0.00 0.00 2.57
340 341 5.882000 TGAAATCGTCTGTCCATTGAATCAT 59.118 36.000 0.00 0.00 0.00 2.45
341 342 5.998454 AATCGTCTGTCCATTGAATCATC 57.002 39.130 0.00 0.00 0.00 2.92
342 343 3.797039 TCGTCTGTCCATTGAATCATCC 58.203 45.455 0.00 0.00 0.00 3.51
343 344 3.197549 TCGTCTGTCCATTGAATCATCCA 59.802 43.478 0.00 0.00 0.00 3.41
344 345 3.940852 CGTCTGTCCATTGAATCATCCAA 59.059 43.478 0.00 0.00 0.00 3.53
345 346 4.395854 CGTCTGTCCATTGAATCATCCAAA 59.604 41.667 0.00 0.00 0.00 3.28
346 347 5.106197 CGTCTGTCCATTGAATCATCCAAAA 60.106 40.000 0.00 0.00 0.00 2.44
347 348 6.327934 GTCTGTCCATTGAATCATCCAAAAG 58.672 40.000 0.00 0.00 0.00 2.27
348 349 6.151648 GTCTGTCCATTGAATCATCCAAAAGA 59.848 38.462 0.00 0.00 0.00 2.52
349 350 6.893554 TCTGTCCATTGAATCATCCAAAAGAT 59.106 34.615 0.00 0.00 34.66 2.40
350 351 8.054572 TCTGTCCATTGAATCATCCAAAAGATA 58.945 33.333 0.00 0.00 32.37 1.98
351 352 8.592529 TGTCCATTGAATCATCCAAAAGATAA 57.407 30.769 0.00 0.00 32.37 1.75
352 353 9.033711 TGTCCATTGAATCATCCAAAAGATAAA 57.966 29.630 0.00 0.00 32.37 1.40
353 354 9.305925 GTCCATTGAATCATCCAAAAGATAAAC 57.694 33.333 0.00 0.00 32.37 2.01
354 355 9.033711 TCCATTGAATCATCCAAAAGATAAACA 57.966 29.630 0.00 0.00 32.37 2.83
355 356 9.826574 CCATTGAATCATCCAAAAGATAAACAT 57.173 29.630 0.00 0.00 32.37 2.71
442 443 5.723492 ACTCATTGCAAAGCTTTTTCAAC 57.277 34.783 19.87 6.06 0.00 3.18
449 453 6.389830 TGCAAAGCTTTTTCAACTATCTCA 57.610 33.333 9.53 0.00 0.00 3.27
450 454 6.208644 TGCAAAGCTTTTTCAACTATCTCAC 58.791 36.000 9.53 0.00 0.00 3.51
451 455 5.631096 GCAAAGCTTTTTCAACTATCTCACC 59.369 40.000 9.53 0.00 0.00 4.02
452 456 5.613358 AAGCTTTTTCAACTATCTCACCG 57.387 39.130 0.00 0.00 0.00 4.94
497 501 0.320247 GTCTCCATCGCTAGCATGGG 60.320 60.000 29.82 23.62 41.25 4.00
552 557 5.221244 GGTGTTTAGGATCCCACATAAATGC 60.221 44.000 17.39 9.08 30.86 3.56
553 558 5.359576 GTGTTTAGGATCCCACATAAATGCA 59.640 40.000 8.55 0.00 30.86 3.96
580 585 1.150081 GTGCTCCCCTGATGGATGG 59.850 63.158 0.00 0.00 35.39 3.51
581 586 1.004626 TGCTCCCCTGATGGATGGA 59.995 57.895 0.00 0.00 35.39 3.41
582 587 0.402419 TGCTCCCCTGATGGATGGAT 60.402 55.000 0.00 0.00 35.39 3.41
583 588 0.037877 GCTCCCCTGATGGATGGATG 59.962 60.000 0.00 0.00 35.39 3.51
611 616 3.423154 CAACCTTGCGGGCTCGTC 61.423 66.667 8.30 0.00 39.10 4.20
623 628 2.490217 CTCGTCGATCCAACGGCT 59.510 61.111 13.50 0.00 40.45 5.52
628 633 0.526524 GTCGATCCAACGGCTCAGAG 60.527 60.000 0.00 0.00 34.94 3.35
629 634 1.880340 CGATCCAACGGCTCAGAGC 60.880 63.158 14.69 14.69 41.46 4.09
635 640 1.227943 AACGGCTCAGAGCAAAGCA 60.228 52.632 24.09 0.00 44.75 3.91
643 648 0.304705 CAGAGCAAAGCAAACGACGT 59.695 50.000 0.00 0.00 0.00 4.34
644 649 0.304705 AGAGCAAAGCAAACGACGTG 59.695 50.000 0.00 0.00 0.00 4.49
645 650 1.262166 GAGCAAAGCAAACGACGTGC 61.262 55.000 0.00 0.97 42.55 5.34
646 651 2.292916 GCAAAGCAAACGACGTGCC 61.293 57.895 0.00 0.00 43.27 5.01
647 652 1.657181 CAAAGCAAACGACGTGCCC 60.657 57.895 0.00 0.00 43.27 5.36
648 653 2.841160 AAAGCAAACGACGTGCCCC 61.841 57.895 0.00 0.00 43.27 5.80
649 654 4.555709 AGCAAACGACGTGCCCCA 62.556 61.111 0.00 0.00 43.27 4.96
650 655 4.322385 GCAAACGACGTGCCCCAC 62.322 66.667 0.00 0.00 35.91 4.61
729 740 3.060615 CGTCGTCCTCGTCCCCTT 61.061 66.667 0.00 0.00 38.33 3.95
743 754 0.547712 CCCCTTCCTTCCTCCTGTCA 60.548 60.000 0.00 0.00 0.00 3.58
878 901 0.251787 GGACCCCAAGCTCAAACCAT 60.252 55.000 0.00 0.00 0.00 3.55
894 917 2.480390 ACCATTCCCCCATTCCATTTG 58.520 47.619 0.00 0.00 0.00 2.32
927 950 2.957190 ATCTCCCATCCATGCCCCCA 62.957 60.000 0.00 0.00 0.00 4.96
958 981 5.065704 ACATCACTAGTCACTGTTGCTAG 57.934 43.478 11.58 11.58 36.40 3.42
1163 1230 0.378962 GAGGAGGACATCGACGACAG 59.621 60.000 0.00 0.00 0.00 3.51
1302 1378 0.682855 CCTTCTCCTCCGACTCTGCT 60.683 60.000 0.00 0.00 0.00 4.24
1382 1458 4.394712 CTCCCACTCCGCCACCAC 62.395 72.222 0.00 0.00 0.00 4.16
1411 1487 0.036875 CAACTCCACCTCCTGTTCCC 59.963 60.000 0.00 0.00 0.00 3.97
1552 1655 1.292223 CTCCTCTTTTCCGGCGTCA 59.708 57.895 6.01 0.00 0.00 4.35
1607 1710 2.045536 GCTCTCCAGGGGCAACAG 60.046 66.667 0.00 0.00 39.74 3.16
1609 1712 2.853542 TCTCCAGGGGCAACAGCA 60.854 61.111 0.00 0.00 39.74 4.41
1671 1774 0.518636 GCATTCAGAGCTTTGCGACA 59.481 50.000 0.00 0.00 0.00 4.35
1690 1793 2.361119 ACATTCTCGAATAGTAGCGCCA 59.639 45.455 2.29 0.00 0.00 5.69
1721 1824 2.350772 CCAAGACCTTGTCGAACAATGC 60.351 50.000 8.72 0.00 37.48 3.56
1753 1860 2.187946 CCAAGCCGGCTACTCAGG 59.812 66.667 33.07 21.85 0.00 3.86
1812 1919 2.496899 TCTTCTTCAATGGCCAGACC 57.503 50.000 13.05 0.00 39.84 3.85
1944 2060 0.946221 GCGACTTGACCTGTGACCAG 60.946 60.000 0.00 0.00 38.50 4.00
2340 2472 2.094894 CAGGCAGATTAAGCAACACTCG 59.905 50.000 0.00 0.00 0.00 4.18
2400 2532 3.706373 GCCGAGGGACTGGAAGCA 61.706 66.667 0.00 0.00 41.55 3.91
2618 2750 1.891933 TATGGATTCCAGTGGCCAGA 58.108 50.000 5.11 0.00 36.75 3.86
2836 2968 3.644738 GGAGGACCTAAATATCGACCCAA 59.355 47.826 0.00 0.00 0.00 4.12
3132 3264 2.879233 GCGGGATATCTTCGGGCCA 61.879 63.158 4.39 0.00 0.00 5.36
3161 3293 0.035152 AATGTCATTGCCTGCGAGGA 60.035 50.000 0.00 0.00 37.67 3.71
3395 3527 2.639839 GGGTAGCTGGTGACCATGATAT 59.360 50.000 4.03 0.00 37.47 1.63
3409 3541 9.342308 GTGACCATGATATCTCCAAATTTTAGA 57.658 33.333 3.98 3.16 0.00 2.10
3540 3672 1.951209 TACAGGATGGCTTGGACAGA 58.049 50.000 0.00 0.00 43.62 3.41
3716 3848 3.465742 AGTGTATGGCTGTATGCTCTG 57.534 47.619 0.00 0.00 42.39 3.35
3727 3859 4.358851 CTGTATGCTCTGTCTCTTGTAGC 58.641 47.826 0.00 0.00 0.00 3.58
3755 3887 5.051891 AGCAATTTAACAGATCACAGCAC 57.948 39.130 0.00 0.00 0.00 4.40
3899 4032 2.618241 TCCGTGCATCTTTTCCATATGC 59.382 45.455 0.00 0.00 44.94 3.14
4016 4150 7.035612 GCTAAAATGTGTTAAAGAAGATGGGG 58.964 38.462 0.00 0.00 0.00 4.96
4040 4174 1.454539 CCGTGGAGAACCCTGGTTT 59.545 57.895 2.55 0.00 38.60 3.27
4047 4181 2.239400 GAGAACCCTGGTTTCCCAAAG 58.761 52.381 2.55 0.00 41.27 2.77
4140 4274 0.178964 TTTCCTTGTGCCTGGGAAGG 60.179 55.000 0.00 0.00 39.79 3.46
4155 4289 5.505780 CTGGGAAGGGTAAACATATGTTGA 58.494 41.667 21.46 11.86 38.44 3.18
4190 4324 4.275936 AGTTGCAATGGTTACTCAGTGTTC 59.724 41.667 0.59 0.00 35.46 3.18
4196 4330 3.792401 TGGTTACTCAGTGTTCTGTGTG 58.208 45.455 11.47 0.82 44.57 3.82
4197 4331 3.196901 TGGTTACTCAGTGTTCTGTGTGT 59.803 43.478 11.47 5.41 44.57 3.72
4198 4332 3.555956 GGTTACTCAGTGTTCTGTGTGTG 59.444 47.826 11.47 0.00 44.57 3.82
4199 4333 1.656652 ACTCAGTGTTCTGTGTGTGC 58.343 50.000 2.84 0.00 43.69 4.57
4200 4334 1.066215 ACTCAGTGTTCTGTGTGTGCA 60.066 47.619 2.84 0.00 43.69 4.57
4201 4335 2.216046 CTCAGTGTTCTGTGTGTGCAT 58.784 47.619 0.00 0.00 41.91 3.96
4202 4336 2.615447 CTCAGTGTTCTGTGTGTGCATT 59.385 45.455 0.00 0.00 41.91 3.56
4203 4337 3.016031 TCAGTGTTCTGTGTGTGCATTT 58.984 40.909 0.00 0.00 41.91 2.32
4204 4338 3.065233 TCAGTGTTCTGTGTGTGCATTTC 59.935 43.478 0.00 0.00 41.91 2.17
4205 4339 3.065786 CAGTGTTCTGTGTGTGCATTTCT 59.934 43.478 0.00 0.00 36.97 2.52
4206 4340 3.696051 AGTGTTCTGTGTGTGCATTTCTT 59.304 39.130 0.00 0.00 0.00 2.52
4248 4382 3.929610 TGATTTGTGTGCATGCATGATTG 59.070 39.130 30.64 5.67 0.00 2.67
4250 4384 2.931512 TGTGTGCATGCATGATTGAG 57.068 45.000 30.64 2.65 0.00 3.02
4404 4538 3.626670 AGCTCTGTGATGAATAAGCAAGC 59.373 43.478 0.00 0.00 32.25 4.01
4503 4646 1.202627 TGTTTTCCAAACAGCCCATGC 60.203 47.619 0.00 0.00 37.95 4.06
4580 4760 0.972134 TGACAGCAGGTTCCTCTCAG 59.028 55.000 0.00 0.00 0.00 3.35
4758 4968 5.126061 ACTTCATCCAAGTTGGCAATGATAC 59.874 40.000 21.05 0.00 43.38 2.24
4840 5054 5.560724 TGAGAAGAAGTCCATGGGTTAAAG 58.439 41.667 13.02 0.00 0.00 1.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 9.401058 ACAAAATCACCAACCAAATGAATTTAA 57.599 25.926 0.00 0.00 0.00 1.52
19 20 8.834465 CACAAAATCACCAACCAAATGAATTTA 58.166 29.630 0.00 0.00 0.00 1.40
20 21 7.555554 TCACAAAATCACCAACCAAATGAATTT 59.444 29.630 0.00 0.00 0.00 1.82
21 22 7.052873 TCACAAAATCACCAACCAAATGAATT 58.947 30.769 0.00 0.00 0.00 2.17
22 23 6.590068 TCACAAAATCACCAACCAAATGAAT 58.410 32.000 0.00 0.00 0.00 2.57
23 24 5.982356 TCACAAAATCACCAACCAAATGAA 58.018 33.333 0.00 0.00 0.00 2.57
24 25 5.604758 TCACAAAATCACCAACCAAATGA 57.395 34.783 0.00 0.00 0.00 2.57
25 26 6.864360 AATCACAAAATCACCAACCAAATG 57.136 33.333 0.00 0.00 0.00 2.32
26 27 7.878547 AAAATCACAAAATCACCAACCAAAT 57.121 28.000 0.00 0.00 0.00 2.32
27 28 7.693969 AAAAATCACAAAATCACCAACCAAA 57.306 28.000 0.00 0.00 0.00 3.28
28 29 8.043710 AGTAAAAATCACAAAATCACCAACCAA 58.956 29.630 0.00 0.00 0.00 3.67
29 30 7.560368 AGTAAAAATCACAAAATCACCAACCA 58.440 30.769 0.00 0.00 0.00 3.67
30 31 8.432110 AAGTAAAAATCACAAAATCACCAACC 57.568 30.769 0.00 0.00 0.00 3.77
54 55 9.444600 GGAAGTACATACTTTGAGTCCAAATAA 57.555 33.333 5.78 0.00 45.84 1.40
55 56 8.822805 AGGAAGTACATACTTTGAGTCCAAATA 58.177 33.333 5.78 0.00 45.84 1.40
56 57 7.690256 AGGAAGTACATACTTTGAGTCCAAAT 58.310 34.615 5.78 0.00 45.84 2.32
57 58 7.016268 AGAGGAAGTACATACTTTGAGTCCAAA 59.984 37.037 5.78 0.00 45.84 3.28
58 59 6.497259 AGAGGAAGTACATACTTTGAGTCCAA 59.503 38.462 5.78 0.00 45.84 3.53
59 60 6.017192 AGAGGAAGTACATACTTTGAGTCCA 58.983 40.000 5.78 0.00 45.84 4.02
60 61 6.071278 ACAGAGGAAGTACATACTTTGAGTCC 60.071 42.308 7.78 2.76 45.84 3.85
61 62 6.926313 ACAGAGGAAGTACATACTTTGAGTC 58.074 40.000 7.78 1.99 45.84 3.36
62 63 6.919775 ACAGAGGAAGTACATACTTTGAGT 57.080 37.500 7.78 0.00 45.84 3.41
63 64 7.329717 GTGAACAGAGGAAGTACATACTTTGAG 59.670 40.741 7.78 0.00 45.84 3.02
64 65 7.015292 AGTGAACAGAGGAAGTACATACTTTGA 59.985 37.037 7.78 0.00 45.84 2.69
65 66 7.155328 AGTGAACAGAGGAAGTACATACTTTG 58.845 38.462 5.78 0.00 45.84 2.77
66 67 7.304497 AGTGAACAGAGGAAGTACATACTTT 57.696 36.000 5.78 0.00 45.84 2.66
68 69 6.919775 AAGTGAACAGAGGAAGTACATACT 57.080 37.500 0.00 0.00 38.39 2.12
69 70 7.964604 AAAAGTGAACAGAGGAAGTACATAC 57.035 36.000 0.00 0.00 0.00 2.39
72 73 9.706691 CTTATAAAAGTGAACAGAGGAAGTACA 57.293 33.333 0.00 0.00 0.00 2.90
73 74 9.924650 TCTTATAAAAGTGAACAGAGGAAGTAC 57.075 33.333 0.00 0.00 34.13 2.73
74 75 9.924650 GTCTTATAAAAGTGAACAGAGGAAGTA 57.075 33.333 0.00 0.00 34.13 2.24
75 76 7.878644 GGTCTTATAAAAGTGAACAGAGGAAGT 59.121 37.037 0.00 0.00 34.13 3.01
76 77 8.097662 AGGTCTTATAAAAGTGAACAGAGGAAG 58.902 37.037 0.00 0.00 34.13 3.46
77 78 7.974504 AGGTCTTATAAAAGTGAACAGAGGAA 58.025 34.615 0.00 0.00 34.13 3.36
78 79 7.554959 AGGTCTTATAAAAGTGAACAGAGGA 57.445 36.000 0.00 0.00 34.13 3.71
79 80 7.878127 TCAAGGTCTTATAAAAGTGAACAGAGG 59.122 37.037 0.00 0.00 34.13 3.69
80 81 8.833231 TCAAGGTCTTATAAAAGTGAACAGAG 57.167 34.615 0.00 0.00 34.13 3.35
81 82 9.273016 CTTCAAGGTCTTATAAAAGTGAACAGA 57.727 33.333 0.00 0.00 34.13 3.41
82 83 9.273016 TCTTCAAGGTCTTATAAAAGTGAACAG 57.727 33.333 0.00 0.00 34.13 3.16
83 84 9.052759 GTCTTCAAGGTCTTATAAAAGTGAACA 57.947 33.333 0.00 0.00 34.13 3.18
84 85 9.052759 TGTCTTCAAGGTCTTATAAAAGTGAAC 57.947 33.333 0.00 0.00 34.13 3.18
85 86 9.793259 ATGTCTTCAAGGTCTTATAAAAGTGAA 57.207 29.630 0.00 0.00 34.13 3.18
86 87 9.793259 AATGTCTTCAAGGTCTTATAAAAGTGA 57.207 29.630 0.00 0.00 34.13 3.41
92 93 9.436957 GTCTGAAATGTCTTCAAGGTCTTATAA 57.563 33.333 0.00 0.00 0.00 0.98
93 94 8.593679 TGTCTGAAATGTCTTCAAGGTCTTATA 58.406 33.333 0.00 0.00 0.00 0.98
94 95 7.453393 TGTCTGAAATGTCTTCAAGGTCTTAT 58.547 34.615 0.00 0.00 0.00 1.73
95 96 6.826668 TGTCTGAAATGTCTTCAAGGTCTTA 58.173 36.000 0.00 0.00 0.00 2.10
96 97 5.684704 TGTCTGAAATGTCTTCAAGGTCTT 58.315 37.500 0.00 0.00 0.00 3.01
97 98 5.296151 TGTCTGAAATGTCTTCAAGGTCT 57.704 39.130 0.00 0.00 0.00 3.85
98 99 6.016777 ACATTGTCTGAAATGTCTTCAAGGTC 60.017 38.462 10.41 0.00 45.47 3.85
99 100 5.829924 ACATTGTCTGAAATGTCTTCAAGGT 59.170 36.000 10.41 0.00 45.47 3.50
100 101 6.323203 ACATTGTCTGAAATGTCTTCAAGG 57.677 37.500 10.41 0.00 45.47 3.61
109 110 9.683069 GGGCTATTTTATACATTGTCTGAAATG 57.317 33.333 12.36 9.50 42.21 2.32
110 111 9.420118 TGGGCTATTTTATACATTGTCTGAAAT 57.580 29.630 9.04 9.04 0.00 2.17
111 112 8.815565 TGGGCTATTTTATACATTGTCTGAAA 57.184 30.769 0.00 0.00 0.00 2.69
112 113 8.995027 ATGGGCTATTTTATACATTGTCTGAA 57.005 30.769 0.00 0.00 0.00 3.02
113 114 8.995027 AATGGGCTATTTTATACATTGTCTGA 57.005 30.769 0.00 0.00 0.00 3.27
125 126 9.303116 TCAGACAACTTTAAATGGGCTATTTTA 57.697 29.630 14.21 2.39 39.61 1.52
126 127 8.189119 TCAGACAACTTTAAATGGGCTATTTT 57.811 30.769 14.21 0.07 39.61 1.82
127 128 7.775053 TCAGACAACTTTAAATGGGCTATTT 57.225 32.000 13.51 13.51 41.68 1.40
128 129 7.775053 TTCAGACAACTTTAAATGGGCTATT 57.225 32.000 0.00 0.00 0.00 1.73
129 130 7.775053 TTTCAGACAACTTTAAATGGGCTAT 57.225 32.000 0.00 0.00 0.00 2.97
130 131 7.450014 TCATTTCAGACAACTTTAAATGGGCTA 59.550 33.333 0.00 0.00 37.43 3.93
131 132 6.267471 TCATTTCAGACAACTTTAAATGGGCT 59.733 34.615 0.00 0.00 37.43 5.19
132 133 6.366061 GTCATTTCAGACAACTTTAAATGGGC 59.634 38.462 0.00 0.00 37.43 5.36
133 134 7.661040 AGTCATTTCAGACAACTTTAAATGGG 58.339 34.615 0.00 0.00 40.98 4.00
140 141 9.573133 CTTTTGTAAGTCATTTCAGACAACTTT 57.427 29.630 0.00 0.00 40.98 2.66
141 142 8.739972 ACTTTTGTAAGTCATTTCAGACAACTT 58.260 29.630 0.00 0.00 40.60 2.66
142 143 8.184192 CACTTTTGTAAGTCATTTCAGACAACT 58.816 33.333 0.00 0.00 42.67 3.16
143 144 8.181573 TCACTTTTGTAAGTCATTTCAGACAAC 58.818 33.333 0.00 0.00 42.67 3.32
144 145 8.275015 TCACTTTTGTAAGTCATTTCAGACAA 57.725 30.769 0.00 0.00 42.67 3.18
145 146 7.857734 TCACTTTTGTAAGTCATTTCAGACA 57.142 32.000 0.00 0.00 42.67 3.41
146 147 7.373441 CGTTCACTTTTGTAAGTCATTTCAGAC 59.627 37.037 0.00 0.00 42.67 3.51
147 148 7.406553 CGTTCACTTTTGTAAGTCATTTCAGA 58.593 34.615 0.00 0.00 42.67 3.27
148 149 6.632834 CCGTTCACTTTTGTAAGTCATTTCAG 59.367 38.462 0.00 0.00 42.67 3.02
149 150 6.316640 TCCGTTCACTTTTGTAAGTCATTTCA 59.683 34.615 0.00 0.00 42.67 2.69
150 151 6.721321 TCCGTTCACTTTTGTAAGTCATTTC 58.279 36.000 0.00 0.00 42.67 2.17
151 152 6.238648 CCTCCGTTCACTTTTGTAAGTCATTT 60.239 38.462 0.00 0.00 42.67 2.32
152 153 5.238650 CCTCCGTTCACTTTTGTAAGTCATT 59.761 40.000 0.00 0.00 42.67 2.57
153 154 4.755123 CCTCCGTTCACTTTTGTAAGTCAT 59.245 41.667 0.00 0.00 42.67 3.06
154 155 4.124238 CCTCCGTTCACTTTTGTAAGTCA 58.876 43.478 0.00 0.00 42.67 3.41
155 156 3.497262 CCCTCCGTTCACTTTTGTAAGTC 59.503 47.826 0.00 0.00 42.67 3.01
156 157 3.135167 TCCCTCCGTTCACTTTTGTAAGT 59.865 43.478 0.00 0.00 45.40 2.24
157 158 3.735591 TCCCTCCGTTCACTTTTGTAAG 58.264 45.455 0.00 0.00 37.40 2.34
158 159 3.135167 ACTCCCTCCGTTCACTTTTGTAA 59.865 43.478 0.00 0.00 0.00 2.41
159 160 2.701951 ACTCCCTCCGTTCACTTTTGTA 59.298 45.455 0.00 0.00 0.00 2.41
160 161 1.489230 ACTCCCTCCGTTCACTTTTGT 59.511 47.619 0.00 0.00 0.00 2.83
161 162 2.256117 ACTCCCTCCGTTCACTTTTG 57.744 50.000 0.00 0.00 0.00 2.44
162 163 3.390311 AGTTACTCCCTCCGTTCACTTTT 59.610 43.478 0.00 0.00 0.00 2.27
163 164 2.970640 AGTTACTCCCTCCGTTCACTTT 59.029 45.455 0.00 0.00 0.00 2.66
164 165 2.606378 AGTTACTCCCTCCGTTCACTT 58.394 47.619 0.00 0.00 0.00 3.16
165 166 2.305858 AGTTACTCCCTCCGTTCACT 57.694 50.000 0.00 0.00 0.00 3.41
166 167 4.732672 ATAAGTTACTCCCTCCGTTCAC 57.267 45.455 0.00 0.00 0.00 3.18
167 168 5.246656 TCAAATAAGTTACTCCCTCCGTTCA 59.753 40.000 0.00 0.00 0.00 3.18
168 169 5.727434 TCAAATAAGTTACTCCCTCCGTTC 58.273 41.667 0.00 0.00 0.00 3.95
169 170 5.750352 TCAAATAAGTTACTCCCTCCGTT 57.250 39.130 0.00 0.00 0.00 4.44
170 171 5.750352 TTCAAATAAGTTACTCCCTCCGT 57.250 39.130 0.00 0.00 0.00 4.69
171 172 6.113411 ACATTCAAATAAGTTACTCCCTCCG 58.887 40.000 0.00 0.00 0.00 4.63
172 173 8.483758 TCTACATTCAAATAAGTTACTCCCTCC 58.516 37.037 0.00 0.00 0.00 4.30
173 174 9.315525 GTCTACATTCAAATAAGTTACTCCCTC 57.684 37.037 0.00 0.00 0.00 4.30
174 175 9.047947 AGTCTACATTCAAATAAGTTACTCCCT 57.952 33.333 0.00 0.00 0.00 4.20
182 183 9.302345 CGTCACATAGTCTACATTCAAATAAGT 57.698 33.333 0.00 0.00 0.00 2.24
183 184 8.269424 GCGTCACATAGTCTACATTCAAATAAG 58.731 37.037 0.00 0.00 0.00 1.73
184 185 7.979537 AGCGTCACATAGTCTACATTCAAATAA 59.020 33.333 0.00 0.00 0.00 1.40
185 186 7.489160 AGCGTCACATAGTCTACATTCAAATA 58.511 34.615 0.00 0.00 0.00 1.40
186 187 6.341316 AGCGTCACATAGTCTACATTCAAAT 58.659 36.000 0.00 0.00 0.00 2.32
187 188 5.720202 AGCGTCACATAGTCTACATTCAAA 58.280 37.500 0.00 0.00 0.00 2.69
188 189 5.324784 AGCGTCACATAGTCTACATTCAA 57.675 39.130 0.00 0.00 0.00 2.69
189 190 4.983671 AGCGTCACATAGTCTACATTCA 57.016 40.909 0.00 0.00 0.00 2.57
190 191 6.648725 AAAAGCGTCACATAGTCTACATTC 57.351 37.500 0.00 0.00 0.00 2.67
191 192 6.426937 ACAAAAAGCGTCACATAGTCTACATT 59.573 34.615 0.00 0.00 0.00 2.71
192 193 5.932303 ACAAAAAGCGTCACATAGTCTACAT 59.068 36.000 0.00 0.00 0.00 2.29
193 194 5.294356 ACAAAAAGCGTCACATAGTCTACA 58.706 37.500 0.00 0.00 0.00 2.74
194 195 5.840940 ACAAAAAGCGTCACATAGTCTAC 57.159 39.130 0.00 0.00 0.00 2.59
195 196 6.854496 AAACAAAAAGCGTCACATAGTCTA 57.146 33.333 0.00 0.00 0.00 2.59
196 197 5.751243 AAACAAAAAGCGTCACATAGTCT 57.249 34.783 0.00 0.00 0.00 3.24
197 198 7.270579 GGAATAAACAAAAAGCGTCACATAGTC 59.729 37.037 0.00 0.00 0.00 2.59
198 199 7.081976 GGAATAAACAAAAAGCGTCACATAGT 58.918 34.615 0.00 0.00 0.00 2.12
199 200 7.081349 TGGAATAAACAAAAAGCGTCACATAG 58.919 34.615 0.00 0.00 0.00 2.23
200 201 6.971602 TGGAATAAACAAAAAGCGTCACATA 58.028 32.000 0.00 0.00 0.00 2.29
201 202 5.837437 TGGAATAAACAAAAAGCGTCACAT 58.163 33.333 0.00 0.00 0.00 3.21
202 203 5.250235 TGGAATAAACAAAAAGCGTCACA 57.750 34.783 0.00 0.00 0.00 3.58
203 204 6.419413 TGATTGGAATAAACAAAAAGCGTCAC 59.581 34.615 0.00 0.00 0.00 3.67
204 205 6.507900 TGATTGGAATAAACAAAAAGCGTCA 58.492 32.000 0.00 0.00 0.00 4.35
205 206 7.381139 TCTTGATTGGAATAAACAAAAAGCGTC 59.619 33.333 0.00 0.00 31.22 5.19
206 207 7.169140 GTCTTGATTGGAATAAACAAAAAGCGT 59.831 33.333 0.00 0.00 31.22 5.07
207 208 7.382218 AGTCTTGATTGGAATAAACAAAAAGCG 59.618 33.333 0.00 0.00 31.22 4.68
208 209 8.490355 CAGTCTTGATTGGAATAAACAAAAAGC 58.510 33.333 0.00 0.00 31.22 3.51
209 210 9.533253 ACAGTCTTGATTGGAATAAACAAAAAG 57.467 29.630 0.00 0.00 31.84 2.27
213 214 9.513906 TCATACAGTCTTGATTGGAATAAACAA 57.486 29.630 0.00 0.00 0.00 2.83
214 215 9.513906 TTCATACAGTCTTGATTGGAATAAACA 57.486 29.630 0.00 0.00 0.00 2.83
219 220 8.472413 CCATTTTCATACAGTCTTGATTGGAAT 58.528 33.333 0.00 0.00 0.00 3.01
220 221 7.577426 GCCATTTTCATACAGTCTTGATTGGAA 60.577 37.037 11.21 0.00 0.00 3.53
221 222 6.127647 GCCATTTTCATACAGTCTTGATTGGA 60.128 38.462 11.21 0.00 0.00 3.53
222 223 6.038356 GCCATTTTCATACAGTCTTGATTGG 58.962 40.000 0.00 0.00 0.00 3.16
223 224 6.038356 GGCCATTTTCATACAGTCTTGATTG 58.962 40.000 0.00 0.00 0.00 2.67
224 225 5.716228 TGGCCATTTTCATACAGTCTTGATT 59.284 36.000 0.00 0.00 0.00 2.57
225 226 5.263599 TGGCCATTTTCATACAGTCTTGAT 58.736 37.500 0.00 0.00 0.00 2.57
226 227 4.661222 TGGCCATTTTCATACAGTCTTGA 58.339 39.130 0.00 0.00 0.00 3.02
227 228 5.389859 TTGGCCATTTTCATACAGTCTTG 57.610 39.130 6.09 0.00 0.00 3.02
228 229 6.610075 ATTTGGCCATTTTCATACAGTCTT 57.390 33.333 6.09 0.00 0.00 3.01
229 230 6.211184 TCAATTTGGCCATTTTCATACAGTCT 59.789 34.615 6.09 0.00 0.00 3.24
230 231 6.397272 TCAATTTGGCCATTTTCATACAGTC 58.603 36.000 6.09 0.00 0.00 3.51
231 232 6.357579 TCAATTTGGCCATTTTCATACAGT 57.642 33.333 6.09 0.00 0.00 3.55
232 233 8.945481 TTATCAATTTGGCCATTTTCATACAG 57.055 30.769 6.09 0.00 0.00 2.74
233 234 9.902684 ATTTATCAATTTGGCCATTTTCATACA 57.097 25.926 6.09 0.00 0.00 2.29
236 237 9.463902 TCAATTTATCAATTTGGCCATTTTCAT 57.536 25.926 6.09 0.00 29.41 2.57
237 238 8.859236 TCAATTTATCAATTTGGCCATTTTCA 57.141 26.923 6.09 0.00 29.41 2.69
241 242 9.902684 TGTAATCAATTTATCAATTTGGCCATT 57.097 25.926 6.09 0.00 29.41 3.16
242 243 9.328845 GTGTAATCAATTTATCAATTTGGCCAT 57.671 29.630 6.09 0.00 29.41 4.40
243 244 8.316946 TGTGTAATCAATTTATCAATTTGGCCA 58.683 29.630 0.00 0.00 29.41 5.36
244 245 8.715191 TGTGTAATCAATTTATCAATTTGGCC 57.285 30.769 0.00 0.00 29.41 5.36
256 257 8.575589 TGCTTTGACTGTATGTGTAATCAATTT 58.424 29.630 0.00 0.00 0.00 1.82
257 258 8.109705 TGCTTTGACTGTATGTGTAATCAATT 57.890 30.769 0.00 0.00 0.00 2.32
258 259 7.607607 TCTGCTTTGACTGTATGTGTAATCAAT 59.392 33.333 0.00 0.00 0.00 2.57
259 260 6.934083 TCTGCTTTGACTGTATGTGTAATCAA 59.066 34.615 0.00 0.00 0.00 2.57
260 261 6.368791 GTCTGCTTTGACTGTATGTGTAATCA 59.631 38.462 0.00 0.00 34.39 2.57
261 262 6.183360 GGTCTGCTTTGACTGTATGTGTAATC 60.183 42.308 0.00 0.00 37.16 1.75
262 263 5.643777 GGTCTGCTTTGACTGTATGTGTAAT 59.356 40.000 0.00 0.00 37.16 1.89
263 264 4.994852 GGTCTGCTTTGACTGTATGTGTAA 59.005 41.667 0.00 0.00 37.16 2.41
264 265 4.039852 TGGTCTGCTTTGACTGTATGTGTA 59.960 41.667 0.00 0.00 37.16 2.90
265 266 3.181455 TGGTCTGCTTTGACTGTATGTGT 60.181 43.478 0.00 0.00 37.16 3.72
266 267 3.402110 TGGTCTGCTTTGACTGTATGTG 58.598 45.455 0.00 0.00 37.16 3.21
267 268 3.769739 TGGTCTGCTTTGACTGTATGT 57.230 42.857 0.00 0.00 37.16 2.29
268 269 5.181811 TCATTTGGTCTGCTTTGACTGTATG 59.818 40.000 0.00 0.00 37.16 2.39
269 270 5.316167 TCATTTGGTCTGCTTTGACTGTAT 58.684 37.500 0.00 0.00 37.16 2.29
270 271 4.713553 TCATTTGGTCTGCTTTGACTGTA 58.286 39.130 0.00 0.00 37.16 2.74
271 272 3.554934 TCATTTGGTCTGCTTTGACTGT 58.445 40.909 0.00 0.00 37.16 3.55
272 273 4.572985 TTCATTTGGTCTGCTTTGACTG 57.427 40.909 0.00 0.00 37.16 3.51
273 274 4.083110 CGATTCATTTGGTCTGCTTTGACT 60.083 41.667 0.00 0.00 37.16 3.41
274 275 4.161333 CGATTCATTTGGTCTGCTTTGAC 58.839 43.478 0.00 0.00 36.31 3.18
275 276 3.366273 GCGATTCATTTGGTCTGCTTTGA 60.366 43.478 0.00 0.00 0.00 2.69
276 277 2.919229 GCGATTCATTTGGTCTGCTTTG 59.081 45.455 0.00 0.00 0.00 2.77
277 278 2.094545 GGCGATTCATTTGGTCTGCTTT 60.095 45.455 0.00 0.00 0.00 3.51
278 279 1.474077 GGCGATTCATTTGGTCTGCTT 59.526 47.619 0.00 0.00 0.00 3.91
279 280 1.098050 GGCGATTCATTTGGTCTGCT 58.902 50.000 0.00 0.00 0.00 4.24
280 281 0.101219 GGGCGATTCATTTGGTCTGC 59.899 55.000 0.00 0.00 0.00 4.26
281 282 0.740737 GGGGCGATTCATTTGGTCTG 59.259 55.000 0.00 0.00 0.00 3.51
282 283 0.748005 CGGGGCGATTCATTTGGTCT 60.748 55.000 0.00 0.00 0.00 3.85
283 284 1.029947 ACGGGGCGATTCATTTGGTC 61.030 55.000 0.00 0.00 0.00 4.02
284 285 1.001393 ACGGGGCGATTCATTTGGT 60.001 52.632 0.00 0.00 0.00 3.67
285 286 1.312371 ACACGGGGCGATTCATTTGG 61.312 55.000 0.00 0.00 0.00 3.28
286 287 1.374560 TACACGGGGCGATTCATTTG 58.625 50.000 0.00 0.00 0.00 2.32
287 288 2.218603 GATACACGGGGCGATTCATTT 58.781 47.619 0.00 0.00 0.00 2.32
288 289 1.140052 TGATACACGGGGCGATTCATT 59.860 47.619 0.00 0.00 0.00 2.57
289 290 0.756294 TGATACACGGGGCGATTCAT 59.244 50.000 0.00 0.00 0.00 2.57
290 291 0.179094 GTGATACACGGGGCGATTCA 60.179 55.000 0.00 0.00 0.00 2.57
291 292 2.601562 GTGATACACGGGGCGATTC 58.398 57.895 0.00 0.00 0.00 2.52
292 293 4.848685 GTGATACACGGGGCGATT 57.151 55.556 0.00 0.00 0.00 3.34
301 302 6.637254 AGACGATTTCATGATACGTGATACAC 59.363 38.462 20.78 9.81 37.32 2.90
302 303 6.636850 CAGACGATTTCATGATACGTGATACA 59.363 38.462 20.78 0.00 37.32 2.29
303 304 6.637254 ACAGACGATTTCATGATACGTGATAC 59.363 38.462 20.78 10.58 37.32 2.24
304 305 6.735130 ACAGACGATTTCATGATACGTGATA 58.265 36.000 20.78 0.00 37.32 2.15
305 306 5.592054 ACAGACGATTTCATGATACGTGAT 58.408 37.500 20.78 10.65 37.32 3.06
306 307 4.993905 ACAGACGATTTCATGATACGTGA 58.006 39.130 20.78 0.00 37.32 4.35
307 308 4.207224 GGACAGACGATTTCATGATACGTG 59.793 45.833 20.78 12.99 37.32 4.49
308 309 4.142249 TGGACAGACGATTTCATGATACGT 60.142 41.667 17.53 17.53 39.82 3.57
309 310 4.359706 TGGACAGACGATTTCATGATACG 58.640 43.478 0.00 5.72 0.00 3.06
310 311 6.479990 TCAATGGACAGACGATTTCATGATAC 59.520 38.462 0.00 0.00 0.00 2.24
311 312 6.581712 TCAATGGACAGACGATTTCATGATA 58.418 36.000 0.00 0.00 0.00 2.15
312 313 5.430886 TCAATGGACAGACGATTTCATGAT 58.569 37.500 0.00 0.00 0.00 2.45
313 314 4.831107 TCAATGGACAGACGATTTCATGA 58.169 39.130 0.00 0.00 0.00 3.07
314 315 5.550232 TTCAATGGACAGACGATTTCATG 57.450 39.130 0.00 0.00 0.00 3.07
315 316 5.882000 TGATTCAATGGACAGACGATTTCAT 59.118 36.000 0.00 0.00 0.00 2.57
316 317 5.244755 TGATTCAATGGACAGACGATTTCA 58.755 37.500 0.00 0.00 0.00 2.69
317 318 5.801350 TGATTCAATGGACAGACGATTTC 57.199 39.130 0.00 0.00 0.00 2.17
318 319 5.297776 GGATGATTCAATGGACAGACGATTT 59.702 40.000 0.00 0.00 0.00 2.17
319 320 4.818546 GGATGATTCAATGGACAGACGATT 59.181 41.667 0.00 0.00 0.00 3.34
320 321 4.141642 TGGATGATTCAATGGACAGACGAT 60.142 41.667 0.00 0.00 0.00 3.73
321 322 3.197549 TGGATGATTCAATGGACAGACGA 59.802 43.478 0.00 0.00 0.00 4.20
322 323 3.534554 TGGATGATTCAATGGACAGACG 58.465 45.455 0.00 0.00 0.00 4.18
323 324 5.902613 TTTGGATGATTCAATGGACAGAC 57.097 39.130 0.00 0.00 0.00 3.51
324 325 6.247676 TCTTTTGGATGATTCAATGGACAGA 58.752 36.000 0.00 0.00 0.00 3.41
325 326 6.519679 TCTTTTGGATGATTCAATGGACAG 57.480 37.500 0.00 0.00 0.00 3.51
326 327 8.592529 TTATCTTTTGGATGATTCAATGGACA 57.407 30.769 0.00 0.00 35.98 4.02
327 328 9.305925 GTTTATCTTTTGGATGATTCAATGGAC 57.694 33.333 0.00 0.00 35.98 4.02
328 329 9.033711 TGTTTATCTTTTGGATGATTCAATGGA 57.966 29.630 0.00 0.00 35.98 3.41
329 330 9.826574 ATGTTTATCTTTTGGATGATTCAATGG 57.173 29.630 0.00 0.00 35.98 3.16
332 333 9.571810 CGAATGTTTATCTTTTGGATGATTCAA 57.428 29.630 0.00 0.00 35.98 2.69
333 334 8.190122 CCGAATGTTTATCTTTTGGATGATTCA 58.810 33.333 0.00 0.00 37.08 2.57
334 335 8.190784 ACCGAATGTTTATCTTTTGGATGATTC 58.809 33.333 6.71 0.00 37.84 2.52
335 336 8.066612 ACCGAATGTTTATCTTTTGGATGATT 57.933 30.769 6.71 0.00 37.84 2.57
336 337 7.339212 TGACCGAATGTTTATCTTTTGGATGAT 59.661 33.333 6.71 0.00 37.84 2.45
337 338 6.657117 TGACCGAATGTTTATCTTTTGGATGA 59.343 34.615 6.71 0.00 37.84 2.92
338 339 6.851609 TGACCGAATGTTTATCTTTTGGATG 58.148 36.000 6.71 0.00 37.84 3.51
339 340 6.659242 ACTGACCGAATGTTTATCTTTTGGAT 59.341 34.615 6.71 0.00 37.84 3.41
340 341 6.001460 ACTGACCGAATGTTTATCTTTTGGA 58.999 36.000 6.71 0.00 37.84 3.53
341 342 6.254281 ACTGACCGAATGTTTATCTTTTGG 57.746 37.500 0.00 0.00 39.36 3.28
342 343 7.359595 TCAACTGACCGAATGTTTATCTTTTG 58.640 34.615 0.00 0.00 0.00 2.44
343 344 7.504924 TCAACTGACCGAATGTTTATCTTTT 57.495 32.000 0.00 0.00 0.00 2.27
344 345 7.444183 TCTTCAACTGACCGAATGTTTATCTTT 59.556 33.333 0.00 0.00 0.00 2.52
345 346 6.934645 TCTTCAACTGACCGAATGTTTATCTT 59.065 34.615 0.00 0.00 0.00 2.40
346 347 6.464222 TCTTCAACTGACCGAATGTTTATCT 58.536 36.000 0.00 0.00 0.00 1.98
347 348 6.721571 TCTTCAACTGACCGAATGTTTATC 57.278 37.500 0.00 0.00 0.00 1.75
348 349 6.878923 TCATCTTCAACTGACCGAATGTTTAT 59.121 34.615 0.00 0.00 0.00 1.40
349 350 6.227522 TCATCTTCAACTGACCGAATGTTTA 58.772 36.000 0.00 0.00 0.00 2.01
350 351 5.063204 TCATCTTCAACTGACCGAATGTTT 58.937 37.500 0.00 0.00 0.00 2.83
351 352 4.641396 TCATCTTCAACTGACCGAATGTT 58.359 39.130 0.00 0.00 0.00 2.71
352 353 4.271696 TCATCTTCAACTGACCGAATGT 57.728 40.909 0.00 0.00 0.00 2.71
353 354 5.114780 AGATCATCTTCAACTGACCGAATG 58.885 41.667 0.00 0.00 0.00 2.67
354 355 5.350504 AGATCATCTTCAACTGACCGAAT 57.649 39.130 0.00 0.00 0.00 3.34
355 356 4.808414 AGATCATCTTCAACTGACCGAA 57.192 40.909 0.00 0.00 0.00 4.30
442 443 1.464376 ATGGTCGGCCGGTGAGATAG 61.464 60.000 27.83 0.00 37.67 2.08
452 456 4.176752 GAGGGGACATGGTCGGCC 62.177 72.222 0.00 0.00 32.65 6.13
491 495 4.451150 TCTGTCGTCGCCCCATGC 62.451 66.667 0.00 0.00 0.00 4.06
497 501 3.343788 CTGGGTCTCTGTCGTCGCC 62.344 68.421 0.00 0.00 0.00 5.54
533 538 4.887071 GTGTGCATTTATGTGGGATCCTAA 59.113 41.667 12.58 0.00 0.00 2.69
611 616 1.880340 GCTCTGAGCCGTTGGATCG 60.880 63.158 18.80 0.00 41.58 3.69
623 628 0.581529 CGTCGTTTGCTTTGCTCTGA 59.418 50.000 0.00 0.00 0.00 3.27
628 633 2.292916 GGCACGTCGTTTGCTTTGC 61.293 57.895 7.64 1.00 40.07 3.68
629 634 1.657181 GGGCACGTCGTTTGCTTTG 60.657 57.895 7.64 0.00 40.07 2.77
635 640 2.590575 CAGTGGGGCACGTCGTTT 60.591 61.111 0.00 0.00 39.64 3.60
688 693 2.175566 GCTCGTAGAAAGTCGTAGTGC 58.824 52.381 0.00 0.00 34.09 4.40
727 738 1.472376 GCGATGACAGGAGGAAGGAAG 60.472 57.143 0.00 0.00 0.00 3.46
729 740 1.330655 GGCGATGACAGGAGGAAGGA 61.331 60.000 0.00 0.00 0.00 3.36
878 901 4.479158 GCTATACAAATGGAATGGGGGAA 58.521 43.478 0.00 0.00 0.00 3.97
894 917 1.552792 GGGAGATGAGCTGGGCTATAC 59.447 57.143 0.00 0.00 39.88 1.47
927 950 5.296780 CAGTGACTAGTGATGTTTTGTGGTT 59.703 40.000 0.00 0.00 0.00 3.67
1163 1230 1.479730 CGGGGTACTGGTAGAAGAACC 59.520 57.143 0.00 0.00 40.19 3.62
1382 1458 2.203280 TGGAGTTGGCGGTGTTGG 60.203 61.111 0.00 0.00 0.00 3.77
1383 1459 2.551912 GGTGGAGTTGGCGGTGTTG 61.552 63.158 0.00 0.00 0.00 3.33
1384 1460 2.203294 GGTGGAGTTGGCGGTGTT 60.203 61.111 0.00 0.00 0.00 3.32
1607 1710 2.178273 GGGCGACGAAATGGTTGC 59.822 61.111 0.00 0.00 44.87 4.17
1609 1712 2.360726 GGGGGCGACGAAATGGTT 60.361 61.111 0.00 0.00 0.00 3.67
1671 1774 2.288273 GGTGGCGCTACTATTCGAGAAT 60.288 50.000 23.68 3.67 34.93 2.40
1690 1793 1.705997 AAGGTCTTGGCGTCCTTGGT 61.706 55.000 0.00 0.00 39.28 3.67
1798 1905 1.375396 CGTCGGTCTGGCCATTGAA 60.375 57.895 5.51 0.00 36.97 2.69
1812 1919 1.695893 GCATGTCCATGTCACCGTCG 61.696 60.000 8.91 0.00 40.80 5.12
1932 2048 2.910688 TCTTCAACTGGTCACAGGTC 57.089 50.000 0.00 0.00 42.11 3.85
1944 2060 0.391793 CCGCCTCCTCCTTCTTCAAC 60.392 60.000 0.00 0.00 0.00 3.18
2047 2177 1.598132 CATCATCAGCTTGCTTCTCCG 59.402 52.381 0.00 0.00 0.00 4.63
2160 2290 0.466189 CCTCGGTGCCCATTGCTATT 60.466 55.000 0.00 0.00 42.00 1.73
2340 2472 2.111251 GCATCCCCCTTAGGCGAC 59.889 66.667 0.00 0.00 0.00 5.19
2618 2750 2.103094 TCCGCTAGCATCTGTAGCAAAT 59.897 45.455 16.45 0.00 42.69 2.32
3132 3264 1.479323 GCAATGACATTCAGGGCACAT 59.521 47.619 0.00 0.00 32.00 3.21
3161 3293 1.368950 CGATCCACCCGATCTGCAT 59.631 57.895 0.00 0.00 44.66 3.96
3395 3527 8.859090 TGAAGAAAAGCATCTAAAATTTGGAGA 58.141 29.630 5.72 5.72 0.00 3.71
3409 3541 7.014038 ACTCTGAAATGAAGTGAAGAAAAGCAT 59.986 33.333 0.00 0.00 0.00 3.79
3540 3672 4.563140 TCTACCATAAAAGTTTCGCCCT 57.437 40.909 0.00 0.00 0.00 5.19
3727 3859 6.671190 TGTGATCTGTTAAATTGCTTGTCAG 58.329 36.000 0.00 0.00 0.00 3.51
3755 3887 9.844790 TCATAAGACACAAAGCATAAAATCAAG 57.155 29.630 0.00 0.00 0.00 3.02
3899 4032 5.571277 TCAATCATGCATACACACAAATCG 58.429 37.500 0.00 0.00 0.00 3.34
4023 4157 0.605589 GGAAACCAGGGTTCTCCACG 60.606 60.000 17.24 0.00 37.35 4.94
4040 4174 9.323985 CATCTTTAACAAATCAAAACTTTGGGA 57.676 29.630 2.49 0.00 37.80 4.37
4047 4181 7.224557 AGGCACACATCTTTAACAAATCAAAAC 59.775 33.333 0.00 0.00 0.00 2.43
4155 4289 5.797051 ACCATTGCAACTTTATTGCTCAAT 58.203 33.333 0.00 0.49 45.13 2.57
4174 4308 4.141711 ACACACAGAACACTGAGTAACCAT 60.142 41.667 0.00 0.00 34.70 3.55
4190 4324 3.110358 CACACAAGAAATGCACACACAG 58.890 45.455 0.00 0.00 0.00 3.66
4196 4330 2.853594 CACACACACACAAGAAATGCAC 59.146 45.455 0.00 0.00 0.00 4.57
4197 4331 2.491298 ACACACACACACAAGAAATGCA 59.509 40.909 0.00 0.00 0.00 3.96
4198 4332 2.853594 CACACACACACACAAGAAATGC 59.146 45.455 0.00 0.00 0.00 3.56
4199 4333 3.853103 CACACACACACACACAAGAAATG 59.147 43.478 0.00 0.00 0.00 2.32
4200 4334 3.505680 ACACACACACACACACAAGAAAT 59.494 39.130 0.00 0.00 0.00 2.17
4201 4335 2.881513 ACACACACACACACACAAGAAA 59.118 40.909 0.00 0.00 0.00 2.52
4202 4336 2.225255 CACACACACACACACACAAGAA 59.775 45.455 0.00 0.00 0.00 2.52
4203 4337 1.803555 CACACACACACACACACAAGA 59.196 47.619 0.00 0.00 0.00 3.02
4204 4338 1.535028 ACACACACACACACACACAAG 59.465 47.619 0.00 0.00 0.00 3.16
4205 4339 1.533299 GACACACACACACACACACAA 59.467 47.619 0.00 0.00 0.00 3.33
4206 4340 1.152510 GACACACACACACACACACA 58.847 50.000 0.00 0.00 0.00 3.72
4250 4384 3.008485 ACTGAAACCTGAGAGGAACATCC 59.992 47.826 0.00 0.00 37.67 3.51
4278 4412 2.979678 AGGAAAACCTGCTGTCTTCCTA 59.020 45.455 11.43 0.00 0.00 2.94
4347 4481 4.200838 AGCTTTCTTCTGCTTCCTCTAC 57.799 45.455 0.00 0.00 35.86 2.59
4371 4505 6.305272 TCATCACAGAGCTAAGAGGAAAAT 57.695 37.500 0.00 0.00 0.00 1.82
4404 4538 4.281688 ACATTCAAACTGGAAATGGAGTGG 59.718 41.667 0.00 0.00 0.00 4.00
4440 4574 1.681229 AGGCCTCCAACCAAATCCTA 58.319 50.000 0.00 0.00 0.00 2.94
4441 4575 0.786435 AAGGCCTCCAACCAAATCCT 59.214 50.000 5.23 0.00 0.00 3.24
4486 4622 0.680618 CTGCATGGGCTGTTTGGAAA 59.319 50.000 0.00 0.00 41.91 3.13
4503 4646 9.716531 TCATGGAAATCATACTAATTCTAGCTG 57.283 33.333 0.00 0.00 34.12 4.24
4580 4760 7.964604 TTCTAGCTAGAGAAAAAGTGAAACC 57.035 36.000 22.19 0.00 32.24 3.27
4639 4849 6.630203 TCTGACCCCTTTTAGCTGTAATAA 57.370 37.500 0.00 0.00 0.00 1.40
4758 4968 6.252655 TGTCATCGTCGATAACTGTATTTGTG 59.747 38.462 7.56 0.00 0.00 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.