Multiple sequence alignment - TraesCS4A01G175600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G175600 chr4A 100.000 2411 0 0 1 2411 446613226 446615636 0.000000e+00 4453.0
1 TraesCS4A01G175600 chr4D 90.824 1809 88 31 1 1767 123142153 123140381 0.000000e+00 2350.0
2 TraesCS4A01G175600 chr4D 91.312 587 30 7 1840 2411 123101809 123101229 0.000000e+00 782.0
3 TraesCS4A01G175600 chr4D 92.308 182 8 2 1849 2030 123101974 123101799 1.110000e-63 254.0
4 TraesCS4A01G175600 chr4B 90.468 1815 99 34 2 1767 187727921 187726132 0.000000e+00 2326.0
5 TraesCS4A01G175600 chr4B 91.864 295 21 3 2106 2398 187724493 187724200 2.230000e-110 409.0
6 TraesCS4A01G175600 chr4B 85.408 233 21 6 1861 2091 187726029 187725808 1.860000e-56 230.0
7 TraesCS4A01G175600 chr1B 87.679 1745 99 45 85 1767 173123346 173121656 0.000000e+00 1925.0
8 TraesCS4A01G175600 chr1B 92.868 631 27 7 1793 2411 173121668 173121044 0.000000e+00 900.0
9 TraesCS4A01G175600 chr1B 92.308 65 2 1 1 62 173123529 173123465 3.300000e-14 89.8
10 TraesCS4A01G175600 chr1A 88.337 1046 50 23 750 1767 121130073 121129072 0.000000e+00 1190.0
11 TraesCS4A01G175600 chr1A 90.016 641 34 14 1 618 121130811 121130178 0.000000e+00 802.0
12 TraesCS4A01G175600 chr1A 96.078 306 12 0 2106 2411 121128677 121128372 1.290000e-137 499.0
13 TraesCS4A01G175600 chr1A 89.490 314 18 3 1793 2106 121129084 121128786 1.350000e-102 383.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G175600 chr4A 446613226 446615636 2410 False 4453.000000 4453 100.000000 1 2411 1 chr4A.!!$F1 2410
1 TraesCS4A01G175600 chr4D 123140381 123142153 1772 True 2350.000000 2350 90.824000 1 1767 1 chr4D.!!$R1 1766
2 TraesCS4A01G175600 chr4D 123101229 123101974 745 True 518.000000 782 91.810000 1840 2411 2 chr4D.!!$R2 571
3 TraesCS4A01G175600 chr4B 187724200 187727921 3721 True 988.333333 2326 89.246667 2 2398 3 chr4B.!!$R1 2396
4 TraesCS4A01G175600 chr1B 173121044 173123529 2485 True 971.600000 1925 90.951667 1 2411 3 chr1B.!!$R1 2410
5 TraesCS4A01G175600 chr1A 121128372 121130811 2439 True 718.500000 1190 90.980250 1 2411 4 chr1A.!!$R1 2410

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
942 1116 0.107066 TTGTGCGCATCATCATCCCT 60.107 50.0 15.91 0.0 0.0 4.2 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1953 2405 1.001641 AGAGCGCTGCCCAGAAAAT 60.002 52.632 18.48 0.0 0.0 1.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
64 151 3.067461 CCTCTCGATTGAGGGAACTAGTG 59.933 52.174 11.84 0.00 46.36 2.74
245 349 9.609950 CAAAAGAAATTTTGAGAAGCAACAAAA 57.390 25.926 7.51 0.00 45.49 2.44
246 351 9.830294 AAAAGAAATTTTGAGAAGCAACAAAAG 57.170 25.926 0.00 0.00 44.94 2.27
254 359 0.752658 AAGCAACAAAAGAGGCCCAC 59.247 50.000 0.00 0.00 0.00 4.61
273 378 1.070134 ACTTCTTGCCGTCTTGCAGTA 59.930 47.619 0.00 0.00 43.21 2.74
415 531 4.222336 TCCTTTTGACACAAACCATCCAT 58.778 39.130 0.00 0.00 0.00 3.41
416 532 4.039004 TCCTTTTGACACAAACCATCCATG 59.961 41.667 0.00 0.00 0.00 3.66
417 533 3.383620 TTTGACACAAACCATCCATGC 57.616 42.857 0.00 0.00 0.00 4.06
418 534 1.992538 TGACACAAACCATCCATGCA 58.007 45.000 0.00 0.00 0.00 3.96
419 535 2.527497 TGACACAAACCATCCATGCAT 58.473 42.857 0.00 0.00 0.00 3.96
584 700 3.870419 GCAACTAGAAAGATCAGCTCAGG 59.130 47.826 0.00 0.00 0.00 3.86
592 708 3.608316 AGATCAGCTCAGGTTGTCTTC 57.392 47.619 0.00 0.00 0.00 2.87
706 868 7.931015 ACATCTAACCACCTCAAGGATAATA 57.069 36.000 2.30 0.00 38.94 0.98
709 871 9.627123 CATCTAACCACCTCAAGGATAATAAAA 57.373 33.333 2.30 0.00 38.94 1.52
759 922 6.092807 GTCTCTGTCTTAAGGCAATCGATTTT 59.907 38.462 11.58 3.27 0.00 1.82
774 937 7.430502 GCAATCGATTTTGAGAAATTGGACTAG 59.569 37.037 8.21 0.00 37.28 2.57
853 1026 0.542232 AGTGGCCTCCTCTTGTACGT 60.542 55.000 3.32 0.00 0.00 3.57
879 1053 2.543777 AGCTTGTGTACACCATTCGT 57.456 45.000 22.91 0.45 0.00 3.85
901 1075 0.179468 ATAAATAGTGGCGCCGGTGT 59.821 50.000 23.90 6.61 0.00 4.16
929 1103 5.174398 GCTATCCATTCAATTCAATTGTGCG 59.826 40.000 9.98 0.12 41.02 5.34
942 1116 0.107066 TTGTGCGCATCATCATCCCT 60.107 50.000 15.91 0.00 0.00 4.20
985 1159 6.265422 TCTTCTCCTTGAAATCTTTTTGGGTC 59.735 38.462 0.00 0.00 33.79 4.46
1014 1189 0.807496 GGAGGATGTCTTGCAACTGC 59.193 55.000 0.00 0.00 42.50 4.40
1020 1195 0.250252 TGTCTTGCAACTGCGGATCA 60.250 50.000 0.00 0.00 45.83 2.92
1066 1241 1.488812 AGTGCGGGTATGGATGCTTTA 59.511 47.619 0.00 0.00 0.00 1.85
1113 1293 1.386533 AATGGATGCTTCTCCTTGCG 58.613 50.000 0.00 0.00 36.20 4.85
1125 1314 4.801330 TCTCCTTGCGAAAATACTCTCA 57.199 40.909 0.00 0.00 0.00 3.27
1157 1352 6.653526 ATCTACTTGATCTGGTGATCTCTG 57.346 41.667 7.42 0.00 46.84 3.35
1160 1355 7.293828 TCTACTTGATCTGGTGATCTCTGTAT 58.706 38.462 7.42 0.00 46.84 2.29
1164 1359 4.831710 TGATCTGGTGATCTCTGTATCTGG 59.168 45.833 7.42 0.00 46.84 3.86
1170 1365 4.646945 GGTGATCTCTGTATCTGGTCAAGA 59.353 45.833 0.00 0.00 39.94 3.02
1173 1368 7.271511 GTGATCTCTGTATCTGGTCAAGAATT 58.728 38.462 0.00 0.00 38.79 2.17
1197 1394 5.491982 AGTTCCTTGTGGTGATGAACTATC 58.508 41.667 0.00 0.00 42.68 2.08
1211 1408 4.693283 TGAACTATCGATTTGATTCGCCT 58.307 39.130 1.71 0.00 38.57 5.52
1329 1526 3.068881 CCTGAGAACAAGGCGGGA 58.931 61.111 0.00 0.00 0.00 5.14
1495 1713 1.550327 TCTGATGGAGTCGAGCAAGT 58.450 50.000 0.00 0.00 0.00 3.16
1531 1756 0.601558 TTTACTTGCTCGCTCTCCGT 59.398 50.000 0.00 0.00 38.35 4.69
1548 1773 1.156645 CGTCTATGCTCTGCCCTTGC 61.157 60.000 0.00 0.00 38.26 4.01
1554 1779 2.045536 CTCTGCCCTTGCTGTCCC 60.046 66.667 0.00 0.00 38.71 4.46
1568 1795 2.028476 GCTGTCCCTGTGTGTATGTGTA 60.028 50.000 0.00 0.00 0.00 2.90
1669 1896 8.358895 ACCTAATTAACTACTCCTAAATCGCTC 58.641 37.037 0.00 0.00 0.00 5.03
1681 1908 5.187186 TCCTAAATCGCTCCTTCAGTTAACT 59.813 40.000 1.12 1.12 0.00 2.24
1682 1909 5.292101 CCTAAATCGCTCCTTCAGTTAACTG 59.708 44.000 26.60 26.60 45.08 3.16
1683 1910 2.743636 TCGCTCCTTCAGTTAACTGG 57.256 50.000 30.35 17.87 43.91 4.00
1684 1911 1.968493 TCGCTCCTTCAGTTAACTGGT 59.032 47.619 30.35 0.00 43.91 4.00
1685 1912 2.367567 TCGCTCCTTCAGTTAACTGGTT 59.632 45.455 30.35 0.00 43.91 3.67
1686 1913 3.139077 CGCTCCTTCAGTTAACTGGTTT 58.861 45.455 30.35 0.00 43.91 3.27
1687 1914 3.564225 CGCTCCTTCAGTTAACTGGTTTT 59.436 43.478 30.35 0.00 43.91 2.43
1688 1915 4.319549 CGCTCCTTCAGTTAACTGGTTTTC 60.320 45.833 30.35 16.41 43.91 2.29
1689 1916 4.822350 GCTCCTTCAGTTAACTGGTTTTCT 59.178 41.667 30.35 0.00 43.91 2.52
1699 1927 9.023967 CAGTTAACTGGTTTTCTTGATTTTCTG 57.976 33.333 25.19 0.00 40.20 3.02
1730 1959 6.398918 GCATCTTCGGCTATTTATCCTCTAA 58.601 40.000 0.00 0.00 0.00 2.10
1731 1960 7.044798 GCATCTTCGGCTATTTATCCTCTAAT 58.955 38.462 0.00 0.00 0.00 1.73
1732 1961 8.198109 GCATCTTCGGCTATTTATCCTCTAATA 58.802 37.037 0.00 0.00 0.00 0.98
1756 1985 7.956420 AACATGAAGTATACAACGAAGAACA 57.044 32.000 5.50 0.00 0.00 3.18
1757 1986 7.956420 ACATGAAGTATACAACGAAGAACAA 57.044 32.000 5.50 0.00 0.00 2.83
1758 1987 8.373048 ACATGAAGTATACAACGAAGAACAAA 57.627 30.769 5.50 0.00 0.00 2.83
1759 1988 8.999431 ACATGAAGTATACAACGAAGAACAAAT 58.001 29.630 5.50 0.00 0.00 2.32
1760 1989 9.825972 CATGAAGTATACAACGAAGAACAAATT 57.174 29.630 5.50 0.00 0.00 1.82
1761 1990 9.825972 ATGAAGTATACAACGAAGAACAAATTG 57.174 29.630 5.50 0.00 0.00 2.32
1762 1991 9.047371 TGAAGTATACAACGAAGAACAAATTGA 57.953 29.630 5.50 0.00 0.00 2.57
1763 1992 9.314501 GAAGTATACAACGAAGAACAAATTGAC 57.685 33.333 5.50 0.00 0.00 3.18
1764 1993 7.803724 AGTATACAACGAAGAACAAATTGACC 58.196 34.615 5.50 0.00 0.00 4.02
1765 1994 4.301637 ACAACGAAGAACAAATTGACCC 57.698 40.909 0.00 0.00 0.00 4.46
1766 1995 3.067601 ACAACGAAGAACAAATTGACCCC 59.932 43.478 0.00 0.00 0.00 4.95
1767 1996 3.223674 ACGAAGAACAAATTGACCCCT 57.776 42.857 0.00 0.00 0.00 4.79
1768 1997 3.562182 ACGAAGAACAAATTGACCCCTT 58.438 40.909 0.00 0.00 0.00 3.95
1769 1998 3.958147 ACGAAGAACAAATTGACCCCTTT 59.042 39.130 0.00 0.00 0.00 3.11
1770 1999 4.404394 ACGAAGAACAAATTGACCCCTTTT 59.596 37.500 0.00 0.00 0.00 2.27
1771 2000 4.982295 CGAAGAACAAATTGACCCCTTTTC 59.018 41.667 0.00 0.00 0.00 2.29
1772 2001 4.955811 AGAACAAATTGACCCCTTTTCC 57.044 40.909 0.00 0.00 0.00 3.13
1773 2002 4.556697 AGAACAAATTGACCCCTTTTCCT 58.443 39.130 0.00 0.00 0.00 3.36
1774 2003 5.711698 AGAACAAATTGACCCCTTTTCCTA 58.288 37.500 0.00 0.00 0.00 2.94
1775 2004 6.140377 AGAACAAATTGACCCCTTTTCCTAA 58.860 36.000 0.00 0.00 0.00 2.69
1776 2005 6.613679 AGAACAAATTGACCCCTTTTCCTAAA 59.386 34.615 0.00 0.00 0.00 1.85
1777 2006 6.816616 ACAAATTGACCCCTTTTCCTAAAA 57.183 33.333 0.00 0.00 0.00 1.52
1778 2007 7.201702 ACAAATTGACCCCTTTTCCTAAAAA 57.798 32.000 0.00 0.00 33.42 1.94
1883 2160 6.353582 CGTCAGAACGTTCAATGTTTCTTAAC 59.646 38.462 28.78 10.95 43.94 2.01
1891 2168 6.075257 CGTTCAATGTTTCTTAACCGGAAAAC 60.075 38.462 9.46 10.86 34.97 2.43
1953 2405 5.277825 GCAACTATGTTGCTGTGTTGTTTA 58.722 37.500 23.07 0.00 41.87 2.01
1954 2406 5.920273 GCAACTATGTTGCTGTGTTGTTTAT 59.080 36.000 23.07 0.00 41.87 1.40
1955 2407 6.420604 GCAACTATGTTGCTGTGTTGTTTATT 59.579 34.615 23.07 0.00 41.87 1.40
1956 2408 7.042791 GCAACTATGTTGCTGTGTTGTTTATTT 60.043 33.333 23.07 0.00 41.87 1.40
1957 2409 8.816144 CAACTATGTTGCTGTGTTGTTTATTTT 58.184 29.630 0.00 0.00 34.91 1.82
2071 2524 1.228429 CCCTTTGCCGTTCCCTTCA 60.228 57.895 0.00 0.00 0.00 3.02
2262 4115 6.673154 AATCGTGCTATAGGTAAACCAAAC 57.327 37.500 1.04 0.00 38.89 2.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
245 349 2.759795 GGCAAGAAGTGGGCCTCT 59.240 61.111 4.53 2.86 44.32 3.69
246 351 2.747855 CGGCAAGAAGTGGGCCTC 60.748 66.667 4.53 0.00 45.53 4.70
254 359 1.728971 CTACTGCAAGACGGCAAGAAG 59.271 52.381 0.00 0.00 44.40 2.85
346 457 4.592778 CCCTTCCCCTTCTTTTGATTTCAA 59.407 41.667 0.00 0.00 0.00 2.69
415 531 3.753815 TGTTCCTTGATGAAGACATGCA 58.246 40.909 0.00 0.00 36.82 3.96
416 532 3.755378 ACTGTTCCTTGATGAAGACATGC 59.245 43.478 0.00 0.00 36.82 4.06
417 533 7.984050 AGTATACTGTTCCTTGATGAAGACATG 59.016 37.037 4.10 0.00 36.82 3.21
418 534 7.984050 CAGTATACTGTTCCTTGATGAAGACAT 59.016 37.037 22.48 0.00 39.09 3.06
419 535 7.323420 CAGTATACTGTTCCTTGATGAAGACA 58.677 38.462 22.48 0.00 39.09 3.41
454 570 7.587258 TCTACCTTCAAATCTCTATCTCTGGA 58.413 38.462 0.00 0.00 0.00 3.86
559 675 5.174395 TGAGCTGATCTTTCTAGTTGCTTC 58.826 41.667 0.00 0.00 0.00 3.86
567 683 4.774726 AGACAACCTGAGCTGATCTTTCTA 59.225 41.667 0.00 0.00 0.00 2.10
584 700 5.006941 TGGTTAAGTTAAGCACGAAGACAAC 59.993 40.000 20.69 0.00 40.82 3.32
592 708 3.370061 GGTAGCTGGTTAAGTTAAGCACG 59.630 47.826 20.69 17.15 40.82 5.34
709 871 8.352942 ACAAAAAGCTCTTCACTCGATAATTTT 58.647 29.630 0.00 0.00 0.00 1.82
710 872 7.875971 ACAAAAAGCTCTTCACTCGATAATTT 58.124 30.769 0.00 0.00 0.00 1.82
723 885 6.484977 CCTTAAGACAGAGACAAAAAGCTCTT 59.515 38.462 3.36 0.00 39.36 2.85
732 894 4.021456 TCGATTGCCTTAAGACAGAGACAA 60.021 41.667 3.36 0.00 0.00 3.18
791 954 1.079197 TGGCACGATGCTACTGGTG 60.079 57.895 9.31 0.00 44.28 4.17
853 1026 3.887352 TGGTGTACACAAGCTTTGGTAA 58.113 40.909 26.51 0.00 34.12 2.85
879 1053 1.965643 ACCGGCGCCACTATTTATAGA 59.034 47.619 28.98 0.00 34.50 1.98
901 1075 6.608405 ACAATTGAATTGAATGGATAGCCTCA 59.392 34.615 23.37 0.00 42.83 3.86
929 1103 3.708403 TGGTATCAGGGATGATGATGC 57.292 47.619 1.04 0.00 37.91 3.91
942 1116 6.305272 AGAAGAAGATGAGCTTTGGTATCA 57.695 37.500 0.00 0.00 36.83 2.15
985 1159 3.641434 AGACATCCTCCAAATCTGTGG 57.359 47.619 0.00 0.00 40.33 4.17
1014 1189 2.895865 CAGCTGCAGCCTGATCCG 60.896 66.667 34.39 10.95 43.38 4.18
1125 1314 8.874156 TCACCAGATCAAGTAGATAAATAGCAT 58.126 33.333 0.00 0.00 37.00 3.79
1154 1349 7.400339 AGGAACTAATTCTTGACCAGATACAGA 59.600 37.037 0.00 0.00 36.02 3.41
1157 1352 7.824779 ACAAGGAACTAATTCTTGACCAGATAC 59.175 37.037 9.99 0.00 38.49 2.24
1160 1355 5.997746 CACAAGGAACTAATTCTTGACCAGA 59.002 40.000 9.99 0.00 38.49 3.86
1164 1359 5.763204 TCACCACAAGGAACTAATTCTTGAC 59.237 40.000 9.99 0.00 38.49 3.18
1170 1365 6.306987 AGTTCATCACCACAAGGAACTAATT 58.693 36.000 0.00 0.00 44.46 1.40
1173 1368 4.974645 AGTTCATCACCACAAGGAACTA 57.025 40.909 0.00 0.00 44.46 2.24
1197 1394 0.859232 CCGGTAGGCGAATCAAATCG 59.141 55.000 0.00 0.00 45.41 3.34
1329 1526 4.681978 GCGGCCACCTCGAACTGT 62.682 66.667 2.24 0.00 0.00 3.55
1495 1713 1.237954 AAACCACACACACACGCACA 61.238 50.000 0.00 0.00 0.00 4.57
1505 1723 0.941542 GCGAGCAAGTAAACCACACA 59.058 50.000 0.00 0.00 0.00 3.72
1531 1756 0.179702 CAGCAAGGGCAGAGCATAGA 59.820 55.000 0.00 0.00 44.61 1.98
1548 1773 2.839486 ACACATACACACAGGGACAG 57.161 50.000 0.00 0.00 0.00 3.51
1554 1779 4.392754 ACACATGCATACACATACACACAG 59.607 41.667 0.00 0.00 0.00 3.66
1568 1795 2.428171 GCAATTACAGGGACACATGCAT 59.572 45.455 0.00 0.00 33.00 3.96
1669 1896 6.693315 TCAAGAAAACCAGTTAACTGAAGG 57.307 37.500 32.50 20.45 46.59 3.46
1681 1908 3.243704 CGCCCAGAAAATCAAGAAAACCA 60.244 43.478 0.00 0.00 0.00 3.67
1682 1909 3.317150 CGCCCAGAAAATCAAGAAAACC 58.683 45.455 0.00 0.00 0.00 3.27
1683 1910 3.317150 CCGCCCAGAAAATCAAGAAAAC 58.683 45.455 0.00 0.00 0.00 2.43
1684 1911 2.288763 GCCGCCCAGAAAATCAAGAAAA 60.289 45.455 0.00 0.00 0.00 2.29
1685 1912 1.272212 GCCGCCCAGAAAATCAAGAAA 59.728 47.619 0.00 0.00 0.00 2.52
1686 1913 0.887933 GCCGCCCAGAAAATCAAGAA 59.112 50.000 0.00 0.00 0.00 2.52
1687 1914 1.305219 CGCCGCCCAGAAAATCAAGA 61.305 55.000 0.00 0.00 0.00 3.02
1688 1915 1.137404 CGCCGCCCAGAAAATCAAG 59.863 57.895 0.00 0.00 0.00 3.02
1689 1916 2.988688 GCGCCGCCCAGAAAATCAA 61.989 57.895 0.00 0.00 0.00 2.57
1730 1959 9.647797 TGTTCTTCGTTGTATACTTCATGTTAT 57.352 29.630 4.17 0.00 0.00 1.89
1731 1960 9.478768 TTGTTCTTCGTTGTATACTTCATGTTA 57.521 29.630 4.17 0.00 0.00 2.41
1732 1961 7.956420 TGTTCTTCGTTGTATACTTCATGTT 57.044 32.000 4.17 0.00 0.00 2.71
1747 1976 3.223674 AGGGGTCAATTTGTTCTTCGT 57.776 42.857 0.00 0.00 0.00 3.85
1753 1982 6.816616 TTTAGGAAAAGGGGTCAATTTGTT 57.183 33.333 0.00 0.00 0.00 2.83
1754 1983 6.816616 TTTTAGGAAAAGGGGTCAATTTGT 57.183 33.333 0.00 0.00 0.00 2.83
1777 2006 9.025020 GGTCAATTTGTTTTTGTTGTTGTTTTT 57.975 25.926 0.00 0.00 0.00 1.94
1778 2007 7.649705 GGGTCAATTTGTTTTTGTTGTTGTTTT 59.350 29.630 0.00 0.00 0.00 2.43
1779 2008 7.142021 GGGTCAATTTGTTTTTGTTGTTGTTT 58.858 30.769 0.00 0.00 0.00 2.83
1780 2009 6.263168 TGGGTCAATTTGTTTTTGTTGTTGTT 59.737 30.769 0.00 0.00 0.00 2.83
1781 2010 5.765182 TGGGTCAATTTGTTTTTGTTGTTGT 59.235 32.000 0.00 0.00 0.00 3.32
1782 2011 6.246420 TGGGTCAATTTGTTTTTGTTGTTG 57.754 33.333 0.00 0.00 0.00 3.33
1783 2012 6.884280 TTGGGTCAATTTGTTTTTGTTGTT 57.116 29.167 0.00 0.00 0.00 2.83
1784 2013 6.884280 TTTGGGTCAATTTGTTTTTGTTGT 57.116 29.167 0.00 0.00 0.00 3.32
1814 2043 9.790344 AAATCTTCATTGTATAGGAGGAATCAG 57.210 33.333 0.00 0.00 0.00 2.90
1920 2372 3.250762 GCAACATAGTTGCTCACTTGTGA 59.749 43.478 23.31 3.32 41.87 3.58
1953 2405 1.001641 AGAGCGCTGCCCAGAAAAT 60.002 52.632 18.48 0.00 0.00 1.82
1954 2406 1.968017 CAGAGCGCTGCCCAGAAAA 60.968 57.895 18.48 0.00 34.95 2.29
1955 2407 2.359107 CAGAGCGCTGCCCAGAAA 60.359 61.111 18.48 0.00 34.95 2.52
1956 2408 3.630013 ACAGAGCGCTGCCCAGAA 61.630 61.111 18.48 0.00 46.26 3.02
1957 2409 4.383861 CACAGAGCGCTGCCCAGA 62.384 66.667 18.48 0.00 46.26 3.86
1991 2444 2.201771 GGGGACCGATCTAGGGCT 59.798 66.667 0.00 0.00 40.86 5.19
2096 3838 6.430451 GTGCCATCACTTAATTCGAATTAGG 58.570 40.000 28.56 28.56 40.03 2.69
2135 3986 9.118236 CGAGATGGAAAAGTTTAGCTTTAAAAG 57.882 33.333 0.00 0.00 45.91 2.27
2262 4115 1.133025 CACTTGCTTAGAAATGCCCCG 59.867 52.381 0.00 0.00 0.00 5.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.