Multiple sequence alignment - TraesCS4A01G175200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G175200 chr4A 100.000 2947 0 0 1 2947 446471479 446474425 0.000000e+00 5443
1 TraesCS4A01G175200 chr4A 98.908 2289 24 1 660 2947 537234299 537232011 0.000000e+00 4087
2 TraesCS4A01G175200 chr4A 98.820 2289 26 1 660 2947 72014896 72017184 0.000000e+00 4076
3 TraesCS4A01G175200 chr4A 98.515 2289 33 1 660 2947 377592154 377594442 0.000000e+00 4037
4 TraesCS4A01G175200 chr4A 96.178 314 11 1 344 657 377591787 377592099 2.030000e-141 512
5 TraesCS4A01G175200 chr4A 94.545 330 16 2 344 672 537234667 537234339 2.620000e-140 508
6 TraesCS4A01G175200 chr5A 99.083 2289 20 1 660 2947 488265386 488267674 0.000000e+00 4109
7 TraesCS4A01G175200 chr5A 90.828 338 31 0 4 341 95568382 95568719 1.250000e-123 453
8 TraesCS4A01G175200 chr2B 98.777 2289 26 2 660 2947 39425430 39427717 0.000000e+00 4071
9 TraesCS4A01G175200 chr2B 97.134 314 9 0 344 657 461096750 461097063 5.590000e-147 531
10 TraesCS4A01G175200 chr2B 96.815 314 10 0 344 657 39425062 39425375 2.600000e-145 525
11 TraesCS4A01G175200 chr2B 90.533 338 32 0 4 341 534842218 534842555 5.790000e-122 448
12 TraesCS4A01G175200 chr3B 98.689 2289 29 1 660 2947 149242771 149240483 0.000000e+00 4060
13 TraesCS4A01G175200 chr6B 98.646 2289 30 1 660 2947 660355125 660352837 0.000000e+00 4054
14 TraesCS4A01G175200 chr6B 96.178 314 12 0 344 657 669342175 669342488 5.630000e-142 514
15 TraesCS4A01G175200 chr1A 98.646 2289 30 1 660 2947 58178932 58181220 0.000000e+00 4054
16 TraesCS4A01G175200 chr1A 96.815 314 10 0 344 657 58178564 58178877 2.600000e-145 525
17 TraesCS4A01G175200 chr1B 98.558 2289 29 2 660 2947 439510648 439508363 0.000000e+00 4041
18 TraesCS4A01G175200 chr1B 95.455 330 13 2 344 672 439511016 439510688 2.600000e-145 525
19 TraesCS4A01G175200 chr4D 97.361 341 9 0 3 343 124260511 124260171 5.480000e-162 580
20 TraesCS4A01G175200 chr4D 87.906 339 41 0 3 341 355859131 355858793 1.650000e-107 399
21 TraesCS4A01G175200 chr4B 97.361 341 9 0 3 343 188193135 188192795 5.480000e-162 580
22 TraesCS4A01G175200 chr4B 94.065 337 17 3 338 672 489025278 489024943 2.620000e-140 508
23 TraesCS4A01G175200 chr2A 95.152 330 14 2 344 672 145437860 145437532 1.210000e-143 520
24 TraesCS4A01G175200 chr6A 91.124 338 30 0 4 341 571030865 571030528 2.680000e-125 459
25 TraesCS4A01G175200 chr6D 90.828 338 31 0 4 341 426115841 426115504 1.250000e-123 453
26 TraesCS4A01G175200 chr5D 90.828 338 31 0 4 341 103214023 103213686 1.250000e-123 453
27 TraesCS4A01G175200 chr5B 90.533 338 32 0 4 341 112265101 112264764 5.790000e-122 448


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G175200 chr4A 446471479 446474425 2946 False 5443.0 5443 100.0000 1 2947 1 chr4A.!!$F2 2946
1 TraesCS4A01G175200 chr4A 72014896 72017184 2288 False 4076.0 4076 98.8200 660 2947 1 chr4A.!!$F1 2287
2 TraesCS4A01G175200 chr4A 537232011 537234667 2656 True 2297.5 4087 96.7265 344 2947 2 chr4A.!!$R1 2603
3 TraesCS4A01G175200 chr4A 377591787 377594442 2655 False 2274.5 4037 97.3465 344 2947 2 chr4A.!!$F3 2603
4 TraesCS4A01G175200 chr5A 488265386 488267674 2288 False 4109.0 4109 99.0830 660 2947 1 chr5A.!!$F2 2287
5 TraesCS4A01G175200 chr2B 39425062 39427717 2655 False 2298.0 4071 97.7960 344 2947 2 chr2B.!!$F3 2603
6 TraesCS4A01G175200 chr3B 149240483 149242771 2288 True 4060.0 4060 98.6890 660 2947 1 chr3B.!!$R1 2287
7 TraesCS4A01G175200 chr6B 660352837 660355125 2288 True 4054.0 4054 98.6460 660 2947 1 chr6B.!!$R1 2287
8 TraesCS4A01G175200 chr1A 58178564 58181220 2656 False 2289.5 4054 97.7305 344 2947 2 chr1A.!!$F1 2603
9 TraesCS4A01G175200 chr1B 439508363 439511016 2653 True 2283.0 4041 97.0065 344 2947 2 chr1B.!!$R1 2603

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
234 235 0.037975 CACAAATGACAAGGGCAGGC 60.038 55.0 0.0 0.0 0.0 4.85 F
305 306 0.108898 CAGAGGACGAGGAGCACAAG 60.109 60.0 0.0 0.0 0.0 3.16 F
306 307 0.251386 AGAGGACGAGGAGCACAAGA 60.251 55.0 0.0 0.0 0.0 3.02 F
307 308 0.603569 GAGGACGAGGAGCACAAGAA 59.396 55.0 0.0 0.0 0.0 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1200 1254 1.667236 CTCATCGTAAGGCATGGCAA 58.333 50.000 22.64 6.11 38.47 4.52 R
1404 1458 1.721664 CCCGTCGATAGCAAGACCGA 61.722 60.000 0.00 0.00 34.10 4.69 R
1606 1660 4.135306 GGATCACATCATCAGTTGCATCT 58.865 43.478 0.00 0.00 0.00 2.90 R
1946 2000 4.400961 GGCAGACGCTCCCAGCTT 62.401 66.667 0.00 0.00 39.60 3.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 3.788672 CCAGCCTGGTGTCCTTATC 57.211 57.895 1.39 0.00 31.35 1.75
27 28 0.181350 CCAGCCTGGTGTCCTTATCC 59.819 60.000 1.39 0.00 31.35 2.59
28 29 0.911769 CAGCCTGGTGTCCTTATCCA 59.088 55.000 0.00 0.00 0.00 3.41
29 30 1.134280 CAGCCTGGTGTCCTTATCCAG 60.134 57.143 0.00 0.00 45.67 3.86
33 34 3.721087 CTGGTGTCCTTATCCAGGTTT 57.279 47.619 0.00 0.00 44.37 3.27
34 35 4.837093 CTGGTGTCCTTATCCAGGTTTA 57.163 45.455 0.00 0.00 44.37 2.01
35 36 5.373812 CTGGTGTCCTTATCCAGGTTTAT 57.626 43.478 0.00 0.00 44.37 1.40
36 37 5.110814 TGGTGTCCTTATCCAGGTTTATG 57.889 43.478 0.00 0.00 44.37 1.90
37 38 4.785914 TGGTGTCCTTATCCAGGTTTATGA 59.214 41.667 0.00 0.00 44.37 2.15
38 39 5.104527 TGGTGTCCTTATCCAGGTTTATGAG 60.105 44.000 0.00 0.00 44.37 2.90
39 40 5.368989 GTGTCCTTATCCAGGTTTATGAGG 58.631 45.833 0.00 0.00 44.37 3.86
40 41 4.412199 TGTCCTTATCCAGGTTTATGAGGG 59.588 45.833 0.00 0.00 44.37 4.30
41 42 3.394606 TCCTTATCCAGGTTTATGAGGGC 59.605 47.826 0.00 0.00 44.37 5.19
42 43 3.403038 CTTATCCAGGTTTATGAGGGCG 58.597 50.000 0.00 0.00 0.00 6.13
43 44 1.507140 ATCCAGGTTTATGAGGGCGA 58.493 50.000 0.00 0.00 0.00 5.54
44 45 0.830648 TCCAGGTTTATGAGGGCGAG 59.169 55.000 0.00 0.00 0.00 5.03
45 46 0.830648 CCAGGTTTATGAGGGCGAGA 59.169 55.000 0.00 0.00 0.00 4.04
46 47 1.202580 CCAGGTTTATGAGGGCGAGAG 60.203 57.143 0.00 0.00 0.00 3.20
47 48 1.123928 AGGTTTATGAGGGCGAGAGG 58.876 55.000 0.00 0.00 0.00 3.69
48 49 1.120530 GGTTTATGAGGGCGAGAGGA 58.879 55.000 0.00 0.00 0.00 3.71
49 50 1.202545 GGTTTATGAGGGCGAGAGGAC 60.203 57.143 0.00 0.00 0.00 3.85
55 56 3.462678 GGGCGAGAGGACCAGGAC 61.463 72.222 0.00 0.00 46.58 3.85
56 57 3.462678 GGCGAGAGGACCAGGACC 61.463 72.222 0.00 0.00 0.00 4.46
57 58 3.462678 GCGAGAGGACCAGGACCC 61.463 72.222 4.04 0.00 0.00 4.46
58 59 3.141488 CGAGAGGACCAGGACCCG 61.141 72.222 4.04 0.00 0.00 5.28
59 60 3.462678 GAGAGGACCAGGACCCGC 61.463 72.222 4.04 1.48 0.00 6.13
64 65 3.998672 GACCAGGACCCGCGACAA 61.999 66.667 8.23 0.00 0.00 3.18
65 66 4.309950 ACCAGGACCCGCGACAAC 62.310 66.667 8.23 0.00 0.00 3.32
66 67 4.308458 CCAGGACCCGCGACAACA 62.308 66.667 8.23 0.00 0.00 3.33
67 68 2.280524 CAGGACCCGCGACAACAA 60.281 61.111 8.23 0.00 0.00 2.83
68 69 2.280592 AGGACCCGCGACAACAAC 60.281 61.111 8.23 0.00 0.00 3.32
69 70 3.351416 GGACCCGCGACAACAACC 61.351 66.667 8.23 0.00 0.00 3.77
70 71 2.280592 GACCCGCGACAACAACCT 60.281 61.111 8.23 0.00 0.00 3.50
71 72 2.590575 ACCCGCGACAACAACCTG 60.591 61.111 8.23 0.00 0.00 4.00
72 73 4.025401 CCCGCGACAACAACCTGC 62.025 66.667 8.23 0.00 0.00 4.85
73 74 2.972505 CCGCGACAACAACCTGCT 60.973 61.111 8.23 0.00 0.00 4.24
74 75 2.249309 CGCGACAACAACCTGCTG 59.751 61.111 0.00 0.00 0.00 4.41
75 76 2.639286 GCGACAACAACCTGCTGG 59.361 61.111 8.29 8.29 39.83 4.85
76 77 2.908073 GCGACAACAACCTGCTGGG 61.908 63.158 14.82 4.64 41.89 4.45
77 78 2.908073 CGACAACAACCTGCTGGGC 61.908 63.158 14.82 0.00 39.10 5.36
78 79 1.827789 GACAACAACCTGCTGGGCA 60.828 57.895 14.82 0.00 39.10 5.36
79 80 1.381056 ACAACAACCTGCTGGGCAA 60.381 52.632 14.82 0.00 38.41 4.52
80 81 1.364901 CAACAACCTGCTGGGCAAG 59.635 57.895 14.82 3.25 38.41 4.01
81 82 1.076044 AACAACCTGCTGGGCAAGT 60.076 52.632 14.82 3.87 38.41 3.16
82 83 0.687427 AACAACCTGCTGGGCAAGTT 60.687 50.000 14.82 9.49 42.90 2.66
83 84 0.687427 ACAACCTGCTGGGCAAGTTT 60.687 50.000 14.82 0.00 39.76 2.66
84 85 0.249573 CAACCTGCTGGGCAAGTTTG 60.250 55.000 14.82 4.44 39.76 2.93
85 86 0.396974 AACCTGCTGGGCAAGTTTGA 60.397 50.000 14.82 0.00 39.76 2.69
86 87 0.825010 ACCTGCTGGGCAAGTTTGAG 60.825 55.000 14.82 0.00 38.41 3.02
87 88 1.288127 CTGCTGGGCAAGTTTGAGC 59.712 57.895 0.00 0.00 38.41 4.26
88 89 1.152694 TGCTGGGCAAGTTTGAGCT 60.153 52.632 0.00 0.00 34.76 4.09
89 90 1.174712 TGCTGGGCAAGTTTGAGCTC 61.175 55.000 6.82 6.82 34.76 4.09
90 91 0.892814 GCTGGGCAAGTTTGAGCTCT 60.893 55.000 16.19 0.00 30.90 4.09
91 92 1.163554 CTGGGCAAGTTTGAGCTCTC 58.836 55.000 16.19 5.70 30.90 3.20
92 93 0.250901 TGGGCAAGTTTGAGCTCTCC 60.251 55.000 16.19 2.48 30.90 3.71
93 94 1.301677 GGGCAAGTTTGAGCTCTCCG 61.302 60.000 16.19 0.00 0.00 4.63
94 95 1.301677 GGCAAGTTTGAGCTCTCCGG 61.302 60.000 16.19 0.00 0.00 5.14
95 96 1.916697 GCAAGTTTGAGCTCTCCGGC 61.917 60.000 16.19 7.52 0.00 6.13
96 97 0.603707 CAAGTTTGAGCTCTCCGGCA 60.604 55.000 16.19 0.00 34.17 5.69
97 98 0.326264 AAGTTTGAGCTCTCCGGCAT 59.674 50.000 16.19 0.00 34.17 4.40
98 99 0.107945 AGTTTGAGCTCTCCGGCATC 60.108 55.000 16.19 0.00 34.17 3.91
99 100 1.092345 GTTTGAGCTCTCCGGCATCC 61.092 60.000 16.19 0.00 34.17 3.51
100 101 2.257409 TTTGAGCTCTCCGGCATCCC 62.257 60.000 16.19 0.00 34.17 3.85
101 102 2.841988 GAGCTCTCCGGCATCCCT 60.842 66.667 6.43 0.00 34.17 4.20
102 103 2.841988 AGCTCTCCGGCATCCCTC 60.842 66.667 0.00 0.00 34.17 4.30
103 104 3.934962 GCTCTCCGGCATCCCTCC 61.935 72.222 0.00 0.00 0.00 4.30
104 105 2.123077 CTCTCCGGCATCCCTCCT 60.123 66.667 0.00 0.00 0.00 3.69
105 106 2.444706 TCTCCGGCATCCCTCCTG 60.445 66.667 0.00 0.00 0.00 3.86
106 107 4.247380 CTCCGGCATCCCTCCTGC 62.247 72.222 0.00 0.00 38.93 4.85
112 113 3.496160 CATCCCTCCTGCCCCCAG 61.496 72.222 0.00 0.00 38.85 4.45
131 132 2.436646 GGTGTGCCCCAGATCACG 60.437 66.667 0.00 0.00 36.06 4.35
132 133 2.436646 GTGTGCCCCAGATCACGG 60.437 66.667 0.00 0.00 36.06 4.94
133 134 2.927856 TGTGCCCCAGATCACGGT 60.928 61.111 0.00 0.00 36.06 4.83
134 135 2.125106 GTGCCCCAGATCACGGTC 60.125 66.667 0.00 0.00 0.00 4.79
135 136 2.284625 TGCCCCAGATCACGGTCT 60.285 61.111 0.00 0.00 0.00 3.85
136 137 2.187946 GCCCCAGATCACGGTCTG 59.812 66.667 0.00 0.00 44.12 3.51
137 138 2.187946 CCCCAGATCACGGTCTGC 59.812 66.667 1.54 0.00 43.36 4.26
138 139 2.362369 CCCCAGATCACGGTCTGCT 61.362 63.158 1.54 0.00 43.36 4.24
139 140 1.599047 CCCAGATCACGGTCTGCTT 59.401 57.895 1.54 0.00 43.36 3.91
140 141 0.460987 CCCAGATCACGGTCTGCTTC 60.461 60.000 1.54 0.00 43.36 3.86
141 142 0.803768 CCAGATCACGGTCTGCTTCG 60.804 60.000 1.54 0.00 43.36 3.79
142 143 0.171231 CAGATCACGGTCTGCTTCGA 59.829 55.000 0.00 0.00 39.19 3.71
143 144 0.171455 AGATCACGGTCTGCTTCGAC 59.829 55.000 0.00 0.00 0.00 4.20
144 145 0.109272 GATCACGGTCTGCTTCGACA 60.109 55.000 0.00 0.00 35.63 4.35
145 146 0.532573 ATCACGGTCTGCTTCGACAT 59.467 50.000 0.00 0.00 35.63 3.06
146 147 0.317160 TCACGGTCTGCTTCGACATT 59.683 50.000 0.00 0.00 35.63 2.71
147 148 0.439985 CACGGTCTGCTTCGACATTG 59.560 55.000 0.00 0.00 35.63 2.82
148 149 0.317160 ACGGTCTGCTTCGACATTGA 59.683 50.000 0.00 0.00 35.63 2.57
149 150 1.066858 ACGGTCTGCTTCGACATTGAT 60.067 47.619 0.00 0.00 35.63 2.57
150 151 1.325640 CGGTCTGCTTCGACATTGATG 59.674 52.381 0.00 0.00 35.63 3.07
151 152 1.063174 GGTCTGCTTCGACATTGATGC 59.937 52.381 0.00 0.98 38.95 3.91
152 153 2.005451 GTCTGCTTCGACATTGATGCT 58.995 47.619 8.11 0.00 39.17 3.79
153 154 3.190079 GTCTGCTTCGACATTGATGCTA 58.810 45.455 8.11 0.00 39.17 3.49
154 155 3.618594 GTCTGCTTCGACATTGATGCTAA 59.381 43.478 8.11 0.00 39.17 3.09
155 156 4.272018 GTCTGCTTCGACATTGATGCTAAT 59.728 41.667 8.11 0.00 39.17 1.73
156 157 4.271776 TCTGCTTCGACATTGATGCTAATG 59.728 41.667 8.11 7.17 42.38 1.90
157 158 3.313249 TGCTTCGACATTGATGCTAATGG 59.687 43.478 11.62 0.00 41.29 3.16
158 159 3.851105 GCTTCGACATTGATGCTAATGGC 60.851 47.826 11.62 8.56 41.63 4.40
170 171 3.325230 GCTAATGGCATTCTGAACGTC 57.675 47.619 17.41 0.00 41.35 4.34
171 172 2.939103 GCTAATGGCATTCTGAACGTCT 59.061 45.455 17.41 0.00 41.35 4.18
172 173 3.001736 GCTAATGGCATTCTGAACGTCTC 59.998 47.826 17.41 0.00 41.35 3.36
173 174 2.029838 ATGGCATTCTGAACGTCTCC 57.970 50.000 0.00 0.00 0.00 3.71
174 175 0.389817 TGGCATTCTGAACGTCTCCG 60.390 55.000 0.00 0.00 40.83 4.63
175 176 1.696832 GGCATTCTGAACGTCTCCGC 61.697 60.000 0.00 0.00 37.70 5.54
176 177 1.696832 GCATTCTGAACGTCTCCGCC 61.697 60.000 0.00 0.00 37.70 6.13
177 178 1.153823 ATTCTGAACGTCTCCGCCG 60.154 57.895 0.00 0.00 37.70 6.46
178 179 1.592400 ATTCTGAACGTCTCCGCCGA 61.592 55.000 0.00 0.00 37.70 5.54
179 180 2.196382 TTCTGAACGTCTCCGCCGAG 62.196 60.000 0.00 0.00 37.70 4.63
180 181 3.685214 CTGAACGTCTCCGCCGAGG 62.685 68.421 2.12 0.00 42.97 4.63
182 183 3.680338 GAACGTCTCCGCCGAGGAC 62.680 68.421 2.12 0.00 45.98 3.85
184 185 3.744719 CGTCTCCGCCGAGGACAA 61.745 66.667 2.12 0.00 45.98 3.18
185 186 2.182030 GTCTCCGCCGAGGACAAG 59.818 66.667 2.12 0.00 45.98 3.16
186 187 2.035155 TCTCCGCCGAGGACAAGA 59.965 61.111 2.12 0.00 45.98 3.02
187 188 2.182030 CTCCGCCGAGGACAAGAC 59.818 66.667 0.00 0.00 45.98 3.01
188 189 3.358076 CTCCGCCGAGGACAAGACC 62.358 68.421 0.00 0.00 45.98 3.85
189 190 3.691342 CCGCCGAGGACAAGACCA 61.691 66.667 0.00 0.00 45.00 4.02
190 191 2.432628 CGCCGAGGACAAGACCAC 60.433 66.667 0.00 0.00 0.00 4.16
191 192 2.932234 CGCCGAGGACAAGACCACT 61.932 63.158 0.00 0.00 0.00 4.00
192 193 1.374758 GCCGAGGACAAGACCACTG 60.375 63.158 0.00 0.00 0.00 3.66
193 194 1.293498 CCGAGGACAAGACCACTGG 59.707 63.158 0.00 0.00 0.00 4.00
194 195 1.293498 CGAGGACAAGACCACTGGG 59.707 63.158 0.00 0.00 41.29 4.45
195 196 1.003233 GAGGACAAGACCACTGGGC 60.003 63.158 0.00 0.00 37.90 5.36
196 197 1.768684 GAGGACAAGACCACTGGGCA 61.769 60.000 2.97 0.00 37.90 5.36
197 198 1.302832 GGACAAGACCACTGGGCAG 60.303 63.158 2.97 0.00 37.90 4.85
198 199 1.754745 GACAAGACCACTGGGCAGA 59.245 57.895 2.97 0.00 37.90 4.26
199 200 0.108585 GACAAGACCACTGGGCAGAA 59.891 55.000 2.97 0.00 37.90 3.02
200 201 0.109342 ACAAGACCACTGGGCAGAAG 59.891 55.000 2.97 0.00 37.90 2.85
201 202 0.397941 CAAGACCACTGGGCAGAAGA 59.602 55.000 2.97 0.00 37.90 2.87
202 203 1.140312 AAGACCACTGGGCAGAAGAA 58.860 50.000 2.97 0.00 37.90 2.52
203 204 0.398318 AGACCACTGGGCAGAAGAAC 59.602 55.000 2.97 0.00 37.90 3.01
204 205 0.108585 GACCACTGGGCAGAAGAACA 59.891 55.000 0.00 0.00 37.90 3.18
205 206 0.550914 ACCACTGGGCAGAAGAACAA 59.449 50.000 0.00 0.00 37.90 2.83
206 207 1.242076 CCACTGGGCAGAAGAACAAG 58.758 55.000 0.00 0.00 0.00 3.16
207 208 1.202806 CCACTGGGCAGAAGAACAAGA 60.203 52.381 0.00 0.00 0.00 3.02
208 209 2.553904 CCACTGGGCAGAAGAACAAGAT 60.554 50.000 0.00 0.00 0.00 2.40
209 210 2.746362 CACTGGGCAGAAGAACAAGATC 59.254 50.000 0.00 0.00 0.00 2.75
210 211 2.373169 ACTGGGCAGAAGAACAAGATCA 59.627 45.455 0.00 0.00 0.00 2.92
211 212 2.746362 CTGGGCAGAAGAACAAGATCAC 59.254 50.000 0.00 0.00 0.00 3.06
212 213 2.087646 GGGCAGAAGAACAAGATCACC 58.912 52.381 0.00 0.00 0.00 4.02
213 214 2.553028 GGGCAGAAGAACAAGATCACCA 60.553 50.000 0.00 0.00 0.00 4.17
214 215 3.350833 GGCAGAAGAACAAGATCACCAT 58.649 45.455 0.00 0.00 0.00 3.55
215 216 3.376546 GGCAGAAGAACAAGATCACCATC 59.623 47.826 0.00 0.00 0.00 3.51
216 217 4.005650 GCAGAAGAACAAGATCACCATCA 58.994 43.478 0.00 0.00 0.00 3.07
217 218 4.142730 GCAGAAGAACAAGATCACCATCAC 60.143 45.833 0.00 0.00 0.00 3.06
218 219 4.999311 CAGAAGAACAAGATCACCATCACA 59.001 41.667 0.00 0.00 0.00 3.58
219 220 5.471116 CAGAAGAACAAGATCACCATCACAA 59.529 40.000 0.00 0.00 0.00 3.33
220 221 6.016860 CAGAAGAACAAGATCACCATCACAAA 60.017 38.462 0.00 0.00 0.00 2.83
221 222 6.718454 AGAAGAACAAGATCACCATCACAAAT 59.282 34.615 0.00 0.00 0.00 2.32
222 223 6.263516 AGAACAAGATCACCATCACAAATG 57.736 37.500 0.00 0.00 0.00 2.32
223 224 6.005823 AGAACAAGATCACCATCACAAATGA 58.994 36.000 0.00 0.00 39.83 2.57
224 225 5.633830 ACAAGATCACCATCACAAATGAC 57.366 39.130 0.00 0.00 37.79 3.06
225 226 5.072055 ACAAGATCACCATCACAAATGACA 58.928 37.500 0.00 0.00 37.79 3.58
226 227 5.535783 ACAAGATCACCATCACAAATGACAA 59.464 36.000 0.00 0.00 37.79 3.18
227 228 5.892160 AGATCACCATCACAAATGACAAG 57.108 39.130 0.00 0.00 37.79 3.16
228 229 4.703575 AGATCACCATCACAAATGACAAGG 59.296 41.667 0.00 0.00 37.79 3.61
229 230 3.156293 TCACCATCACAAATGACAAGGG 58.844 45.455 0.00 0.00 37.79 3.95
230 231 1.895131 ACCATCACAAATGACAAGGGC 59.105 47.619 0.00 0.00 37.79 5.19
231 232 1.894466 CCATCACAAATGACAAGGGCA 59.106 47.619 0.00 0.00 37.79 5.36
232 233 2.094390 CCATCACAAATGACAAGGGCAG 60.094 50.000 0.00 0.00 37.79 4.85
233 234 1.619654 TCACAAATGACAAGGGCAGG 58.380 50.000 0.00 0.00 0.00 4.85
234 235 0.037975 CACAAATGACAAGGGCAGGC 60.038 55.000 0.00 0.00 0.00 4.85
235 236 0.178953 ACAAATGACAAGGGCAGGCT 60.179 50.000 0.00 0.00 0.00 4.58
236 237 0.245539 CAAATGACAAGGGCAGGCTG 59.754 55.000 10.94 10.94 0.00 4.85
237 238 0.112995 AAATGACAAGGGCAGGCTGA 59.887 50.000 20.86 0.00 0.00 4.26
238 239 0.323178 AATGACAAGGGCAGGCTGAG 60.323 55.000 20.86 4.27 0.00 3.35
239 240 2.749441 GACAAGGGCAGGCTGAGC 60.749 66.667 20.86 2.88 0.00 4.26
240 241 3.557903 GACAAGGGCAGGCTGAGCA 62.558 63.158 20.86 0.00 0.00 4.26
241 242 2.282674 CAAGGGCAGGCTGAGCAA 60.283 61.111 20.86 0.00 0.00 3.91
242 243 2.035312 AAGGGCAGGCTGAGCAAG 59.965 61.111 20.86 0.00 0.00 4.01
243 244 3.580604 AAGGGCAGGCTGAGCAAGG 62.581 63.158 20.86 0.00 0.00 3.61
244 245 4.039092 GGGCAGGCTGAGCAAGGA 62.039 66.667 20.86 0.00 0.00 3.36
245 246 2.274760 GGCAGGCTGAGCAAGGAT 59.725 61.111 20.86 0.00 0.00 3.24
246 247 2.119655 GGCAGGCTGAGCAAGGATG 61.120 63.158 20.86 0.00 0.00 3.51
247 248 1.077930 GCAGGCTGAGCAAGGATGA 60.078 57.895 20.86 0.00 0.00 2.92
248 249 1.096386 GCAGGCTGAGCAAGGATGAG 61.096 60.000 20.86 0.00 0.00 2.90
249 250 0.540454 CAGGCTGAGCAAGGATGAGA 59.460 55.000 9.42 0.00 0.00 3.27
250 251 1.141254 CAGGCTGAGCAAGGATGAGAT 59.859 52.381 9.42 0.00 0.00 2.75
251 252 1.417145 AGGCTGAGCAAGGATGAGATC 59.583 52.381 6.82 0.00 0.00 2.75
252 253 1.500108 GCTGAGCAAGGATGAGATCG 58.500 55.000 0.00 0.00 0.00 3.69
253 254 1.068281 GCTGAGCAAGGATGAGATCGA 59.932 52.381 0.00 0.00 0.00 3.59
254 255 2.863312 GCTGAGCAAGGATGAGATCGAG 60.863 54.545 0.00 0.00 0.00 4.04
255 256 2.622470 CTGAGCAAGGATGAGATCGAGA 59.378 50.000 0.00 0.00 0.00 4.04
256 257 3.026694 TGAGCAAGGATGAGATCGAGAA 58.973 45.455 0.00 0.00 0.00 2.87
257 258 3.067883 TGAGCAAGGATGAGATCGAGAAG 59.932 47.826 0.00 0.00 0.00 2.85
258 259 3.295093 AGCAAGGATGAGATCGAGAAGA 58.705 45.455 0.00 0.00 0.00 2.87
259 260 3.896888 AGCAAGGATGAGATCGAGAAGAT 59.103 43.478 0.00 0.00 43.51 2.40
260 261 3.989167 GCAAGGATGAGATCGAGAAGATG 59.011 47.826 0.00 0.00 40.26 2.90
261 262 4.558178 CAAGGATGAGATCGAGAAGATGG 58.442 47.826 0.00 0.00 40.26 3.51
262 263 3.843422 AGGATGAGATCGAGAAGATGGT 58.157 45.455 0.00 0.00 40.26 3.55
263 264 3.573538 AGGATGAGATCGAGAAGATGGTG 59.426 47.826 0.00 0.00 40.26 4.17
264 265 2.879002 TGAGATCGAGAAGATGGTGC 57.121 50.000 0.00 0.00 40.26 5.01
265 266 2.102578 TGAGATCGAGAAGATGGTGCA 58.897 47.619 0.00 0.00 40.26 4.57
266 267 2.100418 TGAGATCGAGAAGATGGTGCAG 59.900 50.000 0.00 0.00 40.26 4.41
267 268 1.411977 AGATCGAGAAGATGGTGCAGG 59.588 52.381 0.00 0.00 40.26 4.85
268 269 1.410517 GATCGAGAAGATGGTGCAGGA 59.589 52.381 0.00 0.00 40.26 3.86
269 270 0.820226 TCGAGAAGATGGTGCAGGAG 59.180 55.000 0.00 0.00 0.00 3.69
270 271 0.179089 CGAGAAGATGGTGCAGGAGG 60.179 60.000 0.00 0.00 0.00 4.30
271 272 0.463474 GAGAAGATGGTGCAGGAGGC 60.463 60.000 0.00 0.00 45.13 4.70
272 273 0.913451 AGAAGATGGTGCAGGAGGCT 60.913 55.000 0.00 0.00 45.15 4.58
273 274 0.747283 GAAGATGGTGCAGGAGGCTG 60.747 60.000 0.00 0.00 45.15 4.85
274 275 1.203441 AAGATGGTGCAGGAGGCTGA 61.203 55.000 0.00 0.00 45.15 4.26
275 276 1.153208 GATGGTGCAGGAGGCTGAG 60.153 63.158 0.00 0.00 45.15 3.35
276 277 1.614525 ATGGTGCAGGAGGCTGAGA 60.615 57.895 0.00 0.00 45.15 3.27
277 278 1.203441 ATGGTGCAGGAGGCTGAGAA 61.203 55.000 0.00 0.00 45.15 2.87
278 279 1.078567 GGTGCAGGAGGCTGAGAAG 60.079 63.158 0.00 0.00 45.15 2.85
279 280 1.676384 GTGCAGGAGGCTGAGAAGT 59.324 57.895 0.00 0.00 45.15 3.01
280 281 0.898320 GTGCAGGAGGCTGAGAAGTA 59.102 55.000 0.00 0.00 45.15 2.24
281 282 0.898320 TGCAGGAGGCTGAGAAGTAC 59.102 55.000 0.00 0.00 45.15 2.73
282 283 0.898320 GCAGGAGGCTGAGAAGTACA 59.102 55.000 0.00 0.00 40.25 2.90
283 284 1.276421 GCAGGAGGCTGAGAAGTACAA 59.724 52.381 0.00 0.00 40.25 2.41
284 285 2.676463 GCAGGAGGCTGAGAAGTACAAG 60.676 54.545 0.00 0.00 40.25 3.16
285 286 2.564947 CAGGAGGCTGAGAAGTACAAGT 59.435 50.000 0.00 0.00 0.00 3.16
286 287 2.829120 AGGAGGCTGAGAAGTACAAGTC 59.171 50.000 0.00 0.00 0.00 3.01
287 288 2.563179 GGAGGCTGAGAAGTACAAGTCA 59.437 50.000 0.00 0.00 0.00 3.41
288 289 3.367910 GGAGGCTGAGAAGTACAAGTCAG 60.368 52.174 11.92 11.92 39.60 3.51
289 290 3.501349 AGGCTGAGAAGTACAAGTCAGA 58.499 45.455 17.79 0.00 39.04 3.27
290 291 3.509575 AGGCTGAGAAGTACAAGTCAGAG 59.490 47.826 17.79 4.68 39.04 3.35
291 292 3.367910 GGCTGAGAAGTACAAGTCAGAGG 60.368 52.174 17.79 0.00 39.04 3.69
292 293 3.508012 GCTGAGAAGTACAAGTCAGAGGA 59.492 47.826 17.79 0.00 39.04 3.71
293 294 4.617298 GCTGAGAAGTACAAGTCAGAGGAC 60.617 50.000 17.79 0.00 44.66 3.85
301 302 4.004348 GTCAGAGGACGAGGAGCA 57.996 61.111 0.00 0.00 33.68 4.26
302 303 1.509004 GTCAGAGGACGAGGAGCAC 59.491 63.158 0.00 0.00 33.68 4.40
303 304 1.074951 TCAGAGGACGAGGAGCACA 59.925 57.895 0.00 0.00 0.00 4.57
304 305 0.539669 TCAGAGGACGAGGAGCACAA 60.540 55.000 0.00 0.00 0.00 3.33
305 306 0.108898 CAGAGGACGAGGAGCACAAG 60.109 60.000 0.00 0.00 0.00 3.16
306 307 0.251386 AGAGGACGAGGAGCACAAGA 60.251 55.000 0.00 0.00 0.00 3.02
307 308 0.603569 GAGGACGAGGAGCACAAGAA 59.396 55.000 0.00 0.00 0.00 2.52
308 309 0.605589 AGGACGAGGAGCACAAGAAG 59.394 55.000 0.00 0.00 0.00 2.85
309 310 0.603569 GGACGAGGAGCACAAGAAGA 59.396 55.000 0.00 0.00 0.00 2.87
310 311 1.000955 GGACGAGGAGCACAAGAAGAA 59.999 52.381 0.00 0.00 0.00 2.52
311 312 2.333014 GACGAGGAGCACAAGAAGAAG 58.667 52.381 0.00 0.00 0.00 2.85
312 313 1.001406 ACGAGGAGCACAAGAAGAAGG 59.999 52.381 0.00 0.00 0.00 3.46
313 314 1.001406 CGAGGAGCACAAGAAGAAGGT 59.999 52.381 0.00 0.00 0.00 3.50
314 315 2.421619 GAGGAGCACAAGAAGAAGGTG 58.578 52.381 0.00 0.00 35.68 4.00
315 316 1.072965 AGGAGCACAAGAAGAAGGTGG 59.927 52.381 0.00 0.00 33.25 4.61
316 317 1.072331 GGAGCACAAGAAGAAGGTGGA 59.928 52.381 0.00 0.00 33.25 4.02
317 318 2.421619 GAGCACAAGAAGAAGGTGGAG 58.578 52.381 0.00 0.00 33.25 3.86
318 319 1.771255 AGCACAAGAAGAAGGTGGAGT 59.229 47.619 0.00 0.00 33.25 3.85
319 320 2.147150 GCACAAGAAGAAGGTGGAGTC 58.853 52.381 0.00 0.00 33.25 3.36
320 321 2.485479 GCACAAGAAGAAGGTGGAGTCA 60.485 50.000 0.00 0.00 33.25 3.41
321 322 3.808728 CACAAGAAGAAGGTGGAGTCAA 58.191 45.455 0.00 0.00 0.00 3.18
322 323 4.199310 CACAAGAAGAAGGTGGAGTCAAA 58.801 43.478 0.00 0.00 0.00 2.69
323 324 4.274459 CACAAGAAGAAGGTGGAGTCAAAG 59.726 45.833 0.00 0.00 0.00 2.77
324 325 4.164221 ACAAGAAGAAGGTGGAGTCAAAGA 59.836 41.667 0.00 0.00 0.00 2.52
325 326 5.126067 CAAGAAGAAGGTGGAGTCAAAGAA 58.874 41.667 0.00 0.00 0.00 2.52
326 327 5.574970 AGAAGAAGGTGGAGTCAAAGAAT 57.425 39.130 0.00 0.00 0.00 2.40
327 328 5.312079 AGAAGAAGGTGGAGTCAAAGAATG 58.688 41.667 0.00 0.00 0.00 2.67
328 329 3.416156 AGAAGGTGGAGTCAAAGAATGC 58.584 45.455 0.00 0.00 0.00 3.56
329 330 2.206576 AGGTGGAGTCAAAGAATGCC 57.793 50.000 0.00 0.00 0.00 4.40
330 331 1.177401 GGTGGAGTCAAAGAATGCCC 58.823 55.000 0.00 0.00 0.00 5.36
331 332 1.272147 GGTGGAGTCAAAGAATGCCCT 60.272 52.381 0.00 0.00 0.00 5.19
332 333 2.519013 GTGGAGTCAAAGAATGCCCTT 58.481 47.619 0.00 0.00 0.00 3.95
333 334 2.229784 GTGGAGTCAAAGAATGCCCTTG 59.770 50.000 0.00 0.00 0.00 3.61
334 335 2.108075 TGGAGTCAAAGAATGCCCTTGA 59.892 45.455 0.00 0.00 0.00 3.02
335 336 2.751806 GGAGTCAAAGAATGCCCTTGAG 59.248 50.000 0.00 0.00 0.00 3.02
336 337 3.560025 GGAGTCAAAGAATGCCCTTGAGA 60.560 47.826 0.00 0.00 0.00 3.27
337 338 4.074970 GAGTCAAAGAATGCCCTTGAGAA 58.925 43.478 0.00 0.00 0.00 2.87
338 339 3.823304 AGTCAAAGAATGCCCTTGAGAAC 59.177 43.478 0.00 0.00 0.00 3.01
339 340 3.823304 GTCAAAGAATGCCCTTGAGAACT 59.177 43.478 0.00 0.00 0.00 3.01
340 341 5.003804 GTCAAAGAATGCCCTTGAGAACTA 58.996 41.667 0.00 0.00 0.00 2.24
341 342 5.649831 GTCAAAGAATGCCCTTGAGAACTAT 59.350 40.000 0.00 0.00 0.00 2.12
342 343 5.649395 TCAAAGAATGCCCTTGAGAACTATG 59.351 40.000 0.00 0.00 0.00 2.23
372 373 2.306805 TCACAGATTTGACCTGAGGCAT 59.693 45.455 0.00 0.00 35.69 4.40
530 531 2.281761 CTTGTCCAGTTGCGGCCT 60.282 61.111 0.00 0.00 0.00 5.19
623 624 1.738099 CAGTGACTTAAGCGCGGCT 60.738 57.895 8.83 2.05 42.56 5.52
657 658 2.500910 CCAGGCAGTTCTTCATCTCTCT 59.499 50.000 0.00 0.00 0.00 3.10
873 926 9.962759 CCGTAGTGTTATTTATTAGTTCACAAC 57.037 33.333 0.00 0.00 0.00 3.32
1014 1068 4.919774 TGTAAGGATGGTTTGGCTTCTA 57.080 40.909 0.00 0.00 0.00 2.10
1194 1248 1.411612 GATTCGGTATCACGGGGTCTT 59.588 52.381 0.00 0.00 33.21 3.01
1200 1254 1.553704 GTATCACGGGGTCTTTGGTCT 59.446 52.381 0.00 0.00 0.00 3.85
1606 1660 4.243008 TTTGCGACGTGCCCTCCA 62.243 61.111 0.00 0.00 45.60 3.86
1771 1825 2.383527 GGGTTCAGCGACTCTTGCG 61.384 63.158 0.00 0.00 37.44 4.85
1878 1932 9.844790 CATTGTTTTTCTTTCATATGTAGCTGA 57.155 29.630 1.90 0.00 0.00 4.26
1946 2000 8.198109 GGTAATCTGCTTCTACTTTCTGTATGA 58.802 37.037 0.00 0.00 0.00 2.15
2609 2663 0.386838 GCTTTGTGTGGAGCAAGCTT 59.613 50.000 0.00 0.00 38.73 3.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 0.181350 GGATAAGGACACCAGGCTGG 59.819 60.000 31.62 31.62 45.02 4.85
9 10 0.911769 TGGATAAGGACACCAGGCTG 59.088 55.000 7.75 7.75 0.00 4.85
10 11 1.207791 CTGGATAAGGACACCAGGCT 58.792 55.000 0.00 0.00 44.96 4.58
11 12 3.788672 CTGGATAAGGACACCAGGC 57.211 57.895 0.00 0.00 44.96 4.85
21 22 3.071023 TCGCCCTCATAAACCTGGATAAG 59.929 47.826 0.00 0.00 0.00 1.73
22 23 3.042682 TCGCCCTCATAAACCTGGATAA 58.957 45.455 0.00 0.00 0.00 1.75
23 24 2.632996 CTCGCCCTCATAAACCTGGATA 59.367 50.000 0.00 0.00 0.00 2.59
24 25 1.417890 CTCGCCCTCATAAACCTGGAT 59.582 52.381 0.00 0.00 0.00 3.41
25 26 0.830648 CTCGCCCTCATAAACCTGGA 59.169 55.000 0.00 0.00 0.00 3.86
26 27 0.830648 TCTCGCCCTCATAAACCTGG 59.169 55.000 0.00 0.00 0.00 4.45
27 28 1.202580 CCTCTCGCCCTCATAAACCTG 60.203 57.143 0.00 0.00 0.00 4.00
28 29 1.123928 CCTCTCGCCCTCATAAACCT 58.876 55.000 0.00 0.00 0.00 3.50
29 30 1.120530 TCCTCTCGCCCTCATAAACC 58.879 55.000 0.00 0.00 0.00 3.27
30 31 1.202545 GGTCCTCTCGCCCTCATAAAC 60.203 57.143 0.00 0.00 0.00 2.01
31 32 1.120530 GGTCCTCTCGCCCTCATAAA 58.879 55.000 0.00 0.00 0.00 1.40
32 33 0.032515 TGGTCCTCTCGCCCTCATAA 60.033 55.000 0.00 0.00 0.00 1.90
33 34 0.468214 CTGGTCCTCTCGCCCTCATA 60.468 60.000 0.00 0.00 0.00 2.15
34 35 1.760086 CTGGTCCTCTCGCCCTCAT 60.760 63.158 0.00 0.00 0.00 2.90
35 36 2.363018 CTGGTCCTCTCGCCCTCA 60.363 66.667 0.00 0.00 0.00 3.86
36 37 3.151022 CCTGGTCCTCTCGCCCTC 61.151 72.222 0.00 0.00 0.00 4.30
37 38 3.673597 TCCTGGTCCTCTCGCCCT 61.674 66.667 0.00 0.00 0.00 5.19
38 39 3.462678 GTCCTGGTCCTCTCGCCC 61.463 72.222 0.00 0.00 0.00 6.13
39 40 3.462678 GGTCCTGGTCCTCTCGCC 61.463 72.222 2.47 0.00 0.00 5.54
40 41 3.462678 GGGTCCTGGTCCTCTCGC 61.463 72.222 9.84 0.00 0.00 5.03
41 42 3.141488 CGGGTCCTGGTCCTCTCG 61.141 72.222 9.84 1.74 0.00 4.04
42 43 3.462678 GCGGGTCCTGGTCCTCTC 61.463 72.222 9.84 0.00 0.00 3.20
47 48 3.998672 TTGTCGCGGGTCCTGGTC 61.999 66.667 6.13 0.00 0.00 4.02
48 49 4.309950 GTTGTCGCGGGTCCTGGT 62.310 66.667 6.13 0.00 0.00 4.00
49 50 3.818121 TTGTTGTCGCGGGTCCTGG 62.818 63.158 6.13 0.00 0.00 4.45
50 51 2.280524 TTGTTGTCGCGGGTCCTG 60.281 61.111 6.13 0.00 0.00 3.86
51 52 2.280592 GTTGTTGTCGCGGGTCCT 60.281 61.111 6.13 0.00 0.00 3.85
52 53 3.351416 GGTTGTTGTCGCGGGTCC 61.351 66.667 6.13 0.00 0.00 4.46
53 54 2.280592 AGGTTGTTGTCGCGGGTC 60.281 61.111 6.13 0.00 0.00 4.46
54 55 2.590575 CAGGTTGTTGTCGCGGGT 60.591 61.111 6.13 0.00 0.00 5.28
55 56 4.025401 GCAGGTTGTTGTCGCGGG 62.025 66.667 6.13 0.00 0.00 6.13
56 57 2.972505 AGCAGGTTGTTGTCGCGG 60.973 61.111 6.13 0.00 0.00 6.46
57 58 2.249309 CAGCAGGTTGTTGTCGCG 59.751 61.111 0.00 0.00 0.00 5.87
58 59 2.639286 CCAGCAGGTTGTTGTCGC 59.361 61.111 0.00 0.00 0.00 5.19
59 60 2.908073 GCCCAGCAGGTTGTTGTCG 61.908 63.158 0.00 0.00 38.26 4.35
60 61 1.391157 TTGCCCAGCAGGTTGTTGTC 61.391 55.000 0.00 0.00 40.61 3.18
61 62 1.381056 TTGCCCAGCAGGTTGTTGT 60.381 52.632 0.00 0.00 40.61 3.32
62 63 1.364901 CTTGCCCAGCAGGTTGTTG 59.635 57.895 0.00 0.00 40.61 3.33
63 64 1.076044 ACTTGCCCAGCAGGTTGTT 60.076 52.632 0.00 0.00 46.34 2.83
64 65 2.603008 ACTTGCCCAGCAGGTTGT 59.397 55.556 0.00 0.00 46.34 3.32
68 69 1.962144 CTCAAACTTGCCCAGCAGG 59.038 57.895 0.00 0.00 40.61 4.85
69 70 1.177256 AGCTCAAACTTGCCCAGCAG 61.177 55.000 4.91 0.00 40.61 4.24
70 71 1.152694 AGCTCAAACTTGCCCAGCA 60.153 52.632 4.91 0.00 36.47 4.41
71 72 0.892814 AGAGCTCAAACTTGCCCAGC 60.893 55.000 17.77 0.00 0.00 4.85
72 73 1.163554 GAGAGCTCAAACTTGCCCAG 58.836 55.000 17.77 0.00 0.00 4.45
73 74 0.250901 GGAGAGCTCAAACTTGCCCA 60.251 55.000 17.77 0.00 0.00 5.36
74 75 1.301677 CGGAGAGCTCAAACTTGCCC 61.302 60.000 17.77 2.85 0.00 5.36
75 76 1.301677 CCGGAGAGCTCAAACTTGCC 61.302 60.000 17.77 4.40 0.00 4.52
76 77 1.916697 GCCGGAGAGCTCAAACTTGC 61.917 60.000 17.77 6.85 0.00 4.01
77 78 0.603707 TGCCGGAGAGCTCAAACTTG 60.604 55.000 17.77 0.00 0.00 3.16
78 79 0.326264 ATGCCGGAGAGCTCAAACTT 59.674 50.000 17.77 0.00 0.00 2.66
79 80 0.107945 GATGCCGGAGAGCTCAAACT 60.108 55.000 17.77 0.00 0.00 2.66
80 81 1.092345 GGATGCCGGAGAGCTCAAAC 61.092 60.000 17.77 6.76 0.00 2.93
81 82 1.221840 GGATGCCGGAGAGCTCAAA 59.778 57.895 17.77 0.00 0.00 2.69
82 83 2.735772 GGGATGCCGGAGAGCTCAA 61.736 63.158 17.77 0.00 0.00 3.02
83 84 3.157252 GGGATGCCGGAGAGCTCA 61.157 66.667 17.77 0.00 0.00 4.26
84 85 2.841988 AGGGATGCCGGAGAGCTC 60.842 66.667 5.05 5.27 0.00 4.09
85 86 2.841988 GAGGGATGCCGGAGAGCT 60.842 66.667 5.05 0.00 0.00 4.09
86 87 3.934962 GGAGGGATGCCGGAGAGC 61.935 72.222 5.05 0.00 0.00 4.09
87 88 2.123077 AGGAGGGATGCCGGAGAG 60.123 66.667 5.05 0.00 0.00 3.20
88 89 2.444706 CAGGAGGGATGCCGGAGA 60.445 66.667 5.05 0.00 0.00 3.71
89 90 4.247380 GCAGGAGGGATGCCGGAG 62.247 72.222 5.05 0.00 37.73 4.63
95 96 3.496160 CTGGGGGCAGGAGGGATG 61.496 72.222 0.00 0.00 0.00 3.51
96 97 4.851252 CCTGGGGGCAGGAGGGAT 62.851 72.222 0.00 0.00 45.00 3.85
114 115 2.436646 CGTGATCTGGGGCACACC 60.437 66.667 0.00 0.00 34.78 4.16
115 116 2.436646 CCGTGATCTGGGGCACAC 60.437 66.667 0.00 0.00 34.78 3.82
116 117 2.927856 ACCGTGATCTGGGGCACA 60.928 61.111 9.04 0.00 34.78 4.57
117 118 2.125106 GACCGTGATCTGGGGCAC 60.125 66.667 9.04 0.00 0.00 5.01
118 119 2.284625 AGACCGTGATCTGGGGCA 60.285 61.111 10.55 0.00 31.98 5.36
119 120 2.187946 CAGACCGTGATCTGGGGC 59.812 66.667 9.04 5.11 42.13 5.80
120 121 1.903877 AAGCAGACCGTGATCTGGGG 61.904 60.000 9.04 3.17 45.35 4.96
121 122 0.460987 GAAGCAGACCGTGATCTGGG 60.461 60.000 9.04 5.47 45.35 4.45
122 123 0.803768 CGAAGCAGACCGTGATCTGG 60.804 60.000 9.76 3.35 45.35 3.86
124 125 0.171455 GTCGAAGCAGACCGTGATCT 59.829 55.000 0.00 0.00 35.22 2.75
125 126 0.109272 TGTCGAAGCAGACCGTGATC 60.109 55.000 0.00 0.00 40.26 2.92
126 127 0.532573 ATGTCGAAGCAGACCGTGAT 59.467 50.000 0.00 0.00 40.26 3.06
127 128 0.317160 AATGTCGAAGCAGACCGTGA 59.683 50.000 0.00 0.00 40.26 4.35
128 129 0.439985 CAATGTCGAAGCAGACCGTG 59.560 55.000 0.00 0.47 40.26 4.94
129 130 0.317160 TCAATGTCGAAGCAGACCGT 59.683 50.000 0.00 0.00 40.26 4.83
130 131 1.325640 CATCAATGTCGAAGCAGACCG 59.674 52.381 0.00 0.00 40.26 4.79
131 132 1.063174 GCATCAATGTCGAAGCAGACC 59.937 52.381 0.00 0.00 40.26 3.85
132 133 2.005451 AGCATCAATGTCGAAGCAGAC 58.995 47.619 0.00 0.00 41.30 3.51
133 134 2.391616 AGCATCAATGTCGAAGCAGA 57.608 45.000 0.00 0.00 32.11 4.26
134 135 4.524749 CATTAGCATCAATGTCGAAGCAG 58.475 43.478 0.00 0.00 32.11 4.24
135 136 3.313249 CCATTAGCATCAATGTCGAAGCA 59.687 43.478 0.00 0.00 34.67 3.91
136 137 3.851105 GCCATTAGCATCAATGTCGAAGC 60.851 47.826 0.00 0.00 42.97 3.86
137 138 3.881795 GCCATTAGCATCAATGTCGAAG 58.118 45.455 0.00 0.00 42.97 3.79
138 139 3.969117 GCCATTAGCATCAATGTCGAA 57.031 42.857 0.00 0.00 42.97 3.71
150 151 2.939103 AGACGTTCAGAATGCCATTAGC 59.061 45.455 1.93 0.00 44.14 3.09
151 152 3.557595 GGAGACGTTCAGAATGCCATTAG 59.442 47.826 1.93 0.00 34.76 1.73
152 153 3.531538 GGAGACGTTCAGAATGCCATTA 58.468 45.455 1.93 0.00 34.76 1.90
153 154 2.359900 GGAGACGTTCAGAATGCCATT 58.640 47.619 1.93 0.00 34.76 3.16
154 155 2.029838 GGAGACGTTCAGAATGCCAT 57.970 50.000 1.93 0.00 34.76 4.40
155 156 3.532896 GGAGACGTTCAGAATGCCA 57.467 52.632 1.93 0.00 34.76 4.92
168 169 2.182030 CTTGTCCTCGGCGGAGAC 59.818 66.667 21.85 18.99 44.20 3.36
169 170 2.035155 TCTTGTCCTCGGCGGAGA 59.965 61.111 21.85 0.49 44.20 3.71
170 171 2.182030 GTCTTGTCCTCGGCGGAG 59.818 66.667 14.06 14.06 44.20 4.63
171 172 3.379445 GGTCTTGTCCTCGGCGGA 61.379 66.667 7.21 0.00 40.30 5.54
172 173 3.691342 TGGTCTTGTCCTCGGCGG 61.691 66.667 7.21 0.00 0.00 6.13
173 174 2.432628 GTGGTCTTGTCCTCGGCG 60.433 66.667 0.00 0.00 0.00 6.46
174 175 1.374758 CAGTGGTCTTGTCCTCGGC 60.375 63.158 0.00 0.00 0.00 5.54
175 176 1.293498 CCAGTGGTCTTGTCCTCGG 59.707 63.158 0.00 0.00 0.00 4.63
176 177 1.293498 CCCAGTGGTCTTGTCCTCG 59.707 63.158 8.74 0.00 0.00 4.63
177 178 1.003233 GCCCAGTGGTCTTGTCCTC 60.003 63.158 8.74 0.00 0.00 3.71
178 179 1.770110 TGCCCAGTGGTCTTGTCCT 60.770 57.895 8.74 0.00 0.00 3.85
179 180 1.302832 CTGCCCAGTGGTCTTGTCC 60.303 63.158 8.74 0.00 0.00 4.02
180 181 0.108585 TTCTGCCCAGTGGTCTTGTC 59.891 55.000 8.74 0.00 0.00 3.18
181 182 0.109342 CTTCTGCCCAGTGGTCTTGT 59.891 55.000 8.74 0.00 0.00 3.16
182 183 0.397941 TCTTCTGCCCAGTGGTCTTG 59.602 55.000 8.74 0.00 0.00 3.02
183 184 1.140312 TTCTTCTGCCCAGTGGTCTT 58.860 50.000 8.74 0.00 0.00 3.01
184 185 0.398318 GTTCTTCTGCCCAGTGGTCT 59.602 55.000 8.74 0.00 0.00 3.85
185 186 0.108585 TGTTCTTCTGCCCAGTGGTC 59.891 55.000 8.74 0.00 0.00 4.02
186 187 0.550914 TTGTTCTTCTGCCCAGTGGT 59.449 50.000 8.74 0.00 0.00 4.16
187 188 1.202806 TCTTGTTCTTCTGCCCAGTGG 60.203 52.381 0.63 0.63 0.00 4.00
188 189 2.260844 TCTTGTTCTTCTGCCCAGTG 57.739 50.000 0.00 0.00 0.00 3.66
189 190 2.373169 TGATCTTGTTCTTCTGCCCAGT 59.627 45.455 0.00 0.00 0.00 4.00
190 191 2.746362 GTGATCTTGTTCTTCTGCCCAG 59.254 50.000 0.00 0.00 0.00 4.45
191 192 2.553028 GGTGATCTTGTTCTTCTGCCCA 60.553 50.000 0.00 0.00 0.00 5.36
192 193 2.087646 GGTGATCTTGTTCTTCTGCCC 58.912 52.381 0.00 0.00 0.00 5.36
193 194 2.783135 TGGTGATCTTGTTCTTCTGCC 58.217 47.619 0.00 0.00 0.00 4.85
194 195 4.005650 TGATGGTGATCTTGTTCTTCTGC 58.994 43.478 0.00 0.00 0.00 4.26
195 196 4.999311 TGTGATGGTGATCTTGTTCTTCTG 59.001 41.667 0.00 0.00 0.00 3.02
196 197 5.233083 TGTGATGGTGATCTTGTTCTTCT 57.767 39.130 0.00 0.00 0.00 2.85
197 198 5.947228 TTGTGATGGTGATCTTGTTCTTC 57.053 39.130 0.00 0.00 0.00 2.87
198 199 6.491062 TCATTTGTGATGGTGATCTTGTTCTT 59.509 34.615 0.00 0.00 0.00 2.52
199 200 6.005823 TCATTTGTGATGGTGATCTTGTTCT 58.994 36.000 0.00 0.00 0.00 3.01
200 201 6.088824 GTCATTTGTGATGGTGATCTTGTTC 58.911 40.000 0.00 0.00 0.00 3.18
201 202 5.535783 TGTCATTTGTGATGGTGATCTTGTT 59.464 36.000 0.00 0.00 0.00 2.83
202 203 5.072055 TGTCATTTGTGATGGTGATCTTGT 58.928 37.500 0.00 0.00 0.00 3.16
203 204 5.632244 TGTCATTTGTGATGGTGATCTTG 57.368 39.130 0.00 0.00 0.00 3.02
204 205 5.184479 CCTTGTCATTTGTGATGGTGATCTT 59.816 40.000 0.00 0.00 0.00 2.40
205 206 4.703575 CCTTGTCATTTGTGATGGTGATCT 59.296 41.667 0.00 0.00 0.00 2.75
206 207 4.142315 CCCTTGTCATTTGTGATGGTGATC 60.142 45.833 0.00 0.00 0.00 2.92
207 208 3.765511 CCCTTGTCATTTGTGATGGTGAT 59.234 43.478 0.00 0.00 0.00 3.06
208 209 3.156293 CCCTTGTCATTTGTGATGGTGA 58.844 45.455 0.00 0.00 0.00 4.02
209 210 2.353011 GCCCTTGTCATTTGTGATGGTG 60.353 50.000 0.00 0.00 0.00 4.17
210 211 1.895131 GCCCTTGTCATTTGTGATGGT 59.105 47.619 0.00 0.00 0.00 3.55
211 212 1.894466 TGCCCTTGTCATTTGTGATGG 59.106 47.619 0.00 0.00 0.00 3.51
212 213 2.094390 CCTGCCCTTGTCATTTGTGATG 60.094 50.000 0.00 0.00 0.00 3.07
213 214 2.173519 CCTGCCCTTGTCATTTGTGAT 58.826 47.619 0.00 0.00 0.00 3.06
214 215 1.619654 CCTGCCCTTGTCATTTGTGA 58.380 50.000 0.00 0.00 0.00 3.58
215 216 0.037975 GCCTGCCCTTGTCATTTGTG 60.038 55.000 0.00 0.00 0.00 3.33
216 217 0.178953 AGCCTGCCCTTGTCATTTGT 60.179 50.000 0.00 0.00 0.00 2.83
217 218 0.245539 CAGCCTGCCCTTGTCATTTG 59.754 55.000 0.00 0.00 0.00 2.32
218 219 0.112995 TCAGCCTGCCCTTGTCATTT 59.887 50.000 0.00 0.00 0.00 2.32
219 220 0.323178 CTCAGCCTGCCCTTGTCATT 60.323 55.000 0.00 0.00 0.00 2.57
220 221 1.302285 CTCAGCCTGCCCTTGTCAT 59.698 57.895 0.00 0.00 0.00 3.06
221 222 2.752358 CTCAGCCTGCCCTTGTCA 59.248 61.111 0.00 0.00 0.00 3.58
222 223 2.749441 GCTCAGCCTGCCCTTGTC 60.749 66.667 0.00 0.00 0.00 3.18
223 224 3.137385 TTGCTCAGCCTGCCCTTGT 62.137 57.895 0.00 0.00 0.00 3.16
224 225 2.282674 TTGCTCAGCCTGCCCTTG 60.283 61.111 0.00 0.00 0.00 3.61
225 226 2.035312 CTTGCTCAGCCTGCCCTT 59.965 61.111 0.00 0.00 0.00 3.95
226 227 4.044439 CCTTGCTCAGCCTGCCCT 62.044 66.667 0.00 0.00 0.00 5.19
227 228 3.355957 ATCCTTGCTCAGCCTGCCC 62.356 63.158 0.00 0.00 0.00 5.36
228 229 2.119655 CATCCTTGCTCAGCCTGCC 61.120 63.158 0.00 0.00 0.00 4.85
229 230 1.077930 TCATCCTTGCTCAGCCTGC 60.078 57.895 0.00 0.00 0.00 4.85
230 231 0.540454 TCTCATCCTTGCTCAGCCTG 59.460 55.000 0.00 0.00 0.00 4.85
231 232 1.417145 GATCTCATCCTTGCTCAGCCT 59.583 52.381 0.00 0.00 0.00 4.58
232 233 1.873069 CGATCTCATCCTTGCTCAGCC 60.873 57.143 0.00 0.00 0.00 4.85
233 234 1.068281 TCGATCTCATCCTTGCTCAGC 59.932 52.381 0.00 0.00 0.00 4.26
234 235 2.622470 TCTCGATCTCATCCTTGCTCAG 59.378 50.000 0.00 0.00 0.00 3.35
235 236 2.659428 TCTCGATCTCATCCTTGCTCA 58.341 47.619 0.00 0.00 0.00 4.26
236 237 3.317711 TCTTCTCGATCTCATCCTTGCTC 59.682 47.826 0.00 0.00 0.00 4.26
237 238 3.295093 TCTTCTCGATCTCATCCTTGCT 58.705 45.455 0.00 0.00 0.00 3.91
238 239 3.724508 TCTTCTCGATCTCATCCTTGC 57.275 47.619 0.00 0.00 0.00 4.01
239 240 4.039004 ACCATCTTCTCGATCTCATCCTTG 59.961 45.833 0.00 0.00 0.00 3.61
240 241 4.039004 CACCATCTTCTCGATCTCATCCTT 59.961 45.833 0.00 0.00 0.00 3.36
241 242 3.573538 CACCATCTTCTCGATCTCATCCT 59.426 47.826 0.00 0.00 0.00 3.24
242 243 3.860378 GCACCATCTTCTCGATCTCATCC 60.860 52.174 0.00 0.00 0.00 3.51
243 244 3.243670 TGCACCATCTTCTCGATCTCATC 60.244 47.826 0.00 0.00 0.00 2.92
244 245 2.697229 TGCACCATCTTCTCGATCTCAT 59.303 45.455 0.00 0.00 0.00 2.90
245 246 2.100418 CTGCACCATCTTCTCGATCTCA 59.900 50.000 0.00 0.00 0.00 3.27
246 247 2.545532 CCTGCACCATCTTCTCGATCTC 60.546 54.545 0.00 0.00 0.00 2.75
247 248 1.411977 CCTGCACCATCTTCTCGATCT 59.588 52.381 0.00 0.00 0.00 2.75
248 249 1.410517 TCCTGCACCATCTTCTCGATC 59.589 52.381 0.00 0.00 0.00 3.69
249 250 1.411977 CTCCTGCACCATCTTCTCGAT 59.588 52.381 0.00 0.00 0.00 3.59
250 251 0.820226 CTCCTGCACCATCTTCTCGA 59.180 55.000 0.00 0.00 0.00 4.04
251 252 0.179089 CCTCCTGCACCATCTTCTCG 60.179 60.000 0.00 0.00 0.00 4.04
252 253 0.463474 GCCTCCTGCACCATCTTCTC 60.463 60.000 0.00 0.00 40.77 2.87
253 254 0.913451 AGCCTCCTGCACCATCTTCT 60.913 55.000 0.00 0.00 44.83 2.85
254 255 0.747283 CAGCCTCCTGCACCATCTTC 60.747 60.000 0.00 0.00 44.83 2.87
255 256 1.203441 TCAGCCTCCTGCACCATCTT 61.203 55.000 0.00 0.00 44.83 2.40
256 257 1.614525 TCAGCCTCCTGCACCATCT 60.615 57.895 0.00 0.00 44.83 2.90
257 258 1.153208 CTCAGCCTCCTGCACCATC 60.153 63.158 0.00 0.00 44.83 3.51
258 259 1.203441 TTCTCAGCCTCCTGCACCAT 61.203 55.000 0.00 0.00 44.83 3.55
259 260 1.834856 CTTCTCAGCCTCCTGCACCA 61.835 60.000 0.00 0.00 44.83 4.17
260 261 1.078567 CTTCTCAGCCTCCTGCACC 60.079 63.158 0.00 0.00 44.83 5.01
261 262 0.898320 TACTTCTCAGCCTCCTGCAC 59.102 55.000 0.00 0.00 44.83 4.57
262 263 0.898320 GTACTTCTCAGCCTCCTGCA 59.102 55.000 0.00 0.00 44.83 4.41
263 264 0.898320 TGTACTTCTCAGCCTCCTGC 59.102 55.000 0.00 0.00 39.00 4.85
264 265 2.564947 ACTTGTACTTCTCAGCCTCCTG 59.435 50.000 0.00 0.00 40.54 3.86
265 266 2.829120 GACTTGTACTTCTCAGCCTCCT 59.171 50.000 0.00 0.00 0.00 3.69
266 267 2.563179 TGACTTGTACTTCTCAGCCTCC 59.437 50.000 0.00 0.00 0.00 4.30
267 268 3.508012 TCTGACTTGTACTTCTCAGCCTC 59.492 47.826 8.54 0.00 31.83 4.70
268 269 3.501349 TCTGACTTGTACTTCTCAGCCT 58.499 45.455 8.54 0.00 31.83 4.58
269 270 3.367910 CCTCTGACTTGTACTTCTCAGCC 60.368 52.174 8.54 0.00 31.83 4.85
270 271 3.508012 TCCTCTGACTTGTACTTCTCAGC 59.492 47.826 8.54 0.00 31.83 4.26
271 272 4.378978 CGTCCTCTGACTTGTACTTCTCAG 60.379 50.000 0.00 1.47 39.47 3.35
272 273 3.502595 CGTCCTCTGACTTGTACTTCTCA 59.497 47.826 0.00 0.00 39.47 3.27
273 274 3.752222 TCGTCCTCTGACTTGTACTTCTC 59.248 47.826 0.00 0.00 39.47 2.87
274 275 3.752665 TCGTCCTCTGACTTGTACTTCT 58.247 45.455 0.00 0.00 39.47 2.85
275 276 3.119779 CCTCGTCCTCTGACTTGTACTTC 60.120 52.174 0.00 0.00 39.47 3.01
276 277 2.820787 CCTCGTCCTCTGACTTGTACTT 59.179 50.000 0.00 0.00 39.47 2.24
277 278 2.040012 TCCTCGTCCTCTGACTTGTACT 59.960 50.000 0.00 0.00 39.47 2.73
278 279 2.420722 CTCCTCGTCCTCTGACTTGTAC 59.579 54.545 0.00 0.00 39.47 2.90
279 280 2.712709 CTCCTCGTCCTCTGACTTGTA 58.287 52.381 0.00 0.00 39.47 2.41
280 281 1.540267 CTCCTCGTCCTCTGACTTGT 58.460 55.000 0.00 0.00 39.47 3.16
281 282 0.172352 GCTCCTCGTCCTCTGACTTG 59.828 60.000 0.00 0.00 39.47 3.16
282 283 0.251386 TGCTCCTCGTCCTCTGACTT 60.251 55.000 0.00 0.00 39.47 3.01
283 284 0.963355 GTGCTCCTCGTCCTCTGACT 60.963 60.000 0.00 0.00 39.47 3.41
284 285 1.244697 TGTGCTCCTCGTCCTCTGAC 61.245 60.000 0.00 0.00 38.18 3.51
285 286 0.539669 TTGTGCTCCTCGTCCTCTGA 60.540 55.000 0.00 0.00 0.00 3.27
286 287 0.108898 CTTGTGCTCCTCGTCCTCTG 60.109 60.000 0.00 0.00 0.00 3.35
287 288 0.251386 TCTTGTGCTCCTCGTCCTCT 60.251 55.000 0.00 0.00 0.00 3.69
288 289 0.603569 TTCTTGTGCTCCTCGTCCTC 59.396 55.000 0.00 0.00 0.00 3.71
289 290 0.605589 CTTCTTGTGCTCCTCGTCCT 59.394 55.000 0.00 0.00 0.00 3.85
290 291 0.603569 TCTTCTTGTGCTCCTCGTCC 59.396 55.000 0.00 0.00 0.00 4.79
291 292 2.333014 CTTCTTCTTGTGCTCCTCGTC 58.667 52.381 0.00 0.00 0.00 4.20
292 293 1.001406 CCTTCTTCTTGTGCTCCTCGT 59.999 52.381 0.00 0.00 0.00 4.18
293 294 1.001406 ACCTTCTTCTTGTGCTCCTCG 59.999 52.381 0.00 0.00 0.00 4.63
294 295 2.421619 CACCTTCTTCTTGTGCTCCTC 58.578 52.381 0.00 0.00 0.00 3.71
295 296 1.072965 CCACCTTCTTCTTGTGCTCCT 59.927 52.381 0.00 0.00 0.00 3.69
296 297 1.072331 TCCACCTTCTTCTTGTGCTCC 59.928 52.381 0.00 0.00 0.00 4.70
297 298 2.224402 ACTCCACCTTCTTCTTGTGCTC 60.224 50.000 0.00 0.00 0.00 4.26
298 299 1.771255 ACTCCACCTTCTTCTTGTGCT 59.229 47.619 0.00 0.00 0.00 4.40
299 300 2.147150 GACTCCACCTTCTTCTTGTGC 58.853 52.381 0.00 0.00 0.00 4.57
300 301 3.475566 TGACTCCACCTTCTTCTTGTG 57.524 47.619 0.00 0.00 0.00 3.33
301 302 4.164221 TCTTTGACTCCACCTTCTTCTTGT 59.836 41.667 0.00 0.00 0.00 3.16
302 303 4.708177 TCTTTGACTCCACCTTCTTCTTG 58.292 43.478 0.00 0.00 0.00 3.02
303 304 5.373812 TTCTTTGACTCCACCTTCTTCTT 57.626 39.130 0.00 0.00 0.00 2.52
304 305 5.312079 CATTCTTTGACTCCACCTTCTTCT 58.688 41.667 0.00 0.00 0.00 2.85
305 306 4.083057 GCATTCTTTGACTCCACCTTCTTC 60.083 45.833 0.00 0.00 0.00 2.87
306 307 3.823304 GCATTCTTTGACTCCACCTTCTT 59.177 43.478 0.00 0.00 0.00 2.52
307 308 3.416156 GCATTCTTTGACTCCACCTTCT 58.584 45.455 0.00 0.00 0.00 2.85
308 309 2.489722 GGCATTCTTTGACTCCACCTTC 59.510 50.000 0.00 0.00 0.00 3.46
309 310 2.519013 GGCATTCTTTGACTCCACCTT 58.481 47.619 0.00 0.00 0.00 3.50
310 311 1.272147 GGGCATTCTTTGACTCCACCT 60.272 52.381 0.00 0.00 32.03 4.00
311 312 1.177401 GGGCATTCTTTGACTCCACC 58.823 55.000 0.00 0.00 32.03 4.61
312 313 2.206576 AGGGCATTCTTTGACTCCAC 57.793 50.000 0.00 0.00 32.03 4.02
313 314 2.108075 TCAAGGGCATTCTTTGACTCCA 59.892 45.455 0.00 0.00 32.03 3.86
314 315 2.751806 CTCAAGGGCATTCTTTGACTCC 59.248 50.000 0.00 0.00 32.03 3.85
315 316 3.679389 TCTCAAGGGCATTCTTTGACTC 58.321 45.455 0.00 0.00 32.03 3.36
316 317 3.795688 TCTCAAGGGCATTCTTTGACT 57.204 42.857 0.00 0.00 32.03 3.41
317 318 3.823304 AGTTCTCAAGGGCATTCTTTGAC 59.177 43.478 0.00 0.00 0.00 3.18
318 319 4.104383 AGTTCTCAAGGGCATTCTTTGA 57.896 40.909 0.00 0.00 0.00 2.69
319 320 5.163581 CCATAGTTCTCAAGGGCATTCTTTG 60.164 44.000 0.00 0.00 0.00 2.77
320 321 4.952335 CCATAGTTCTCAAGGGCATTCTTT 59.048 41.667 0.00 0.00 0.00 2.52
321 322 4.530875 CCATAGTTCTCAAGGGCATTCTT 58.469 43.478 0.00 0.00 0.00 2.52
322 323 3.117738 CCCATAGTTCTCAAGGGCATTCT 60.118 47.826 0.00 0.00 31.81 2.40
323 324 3.217626 CCCATAGTTCTCAAGGGCATTC 58.782 50.000 0.00 0.00 31.81 2.67
324 325 3.303351 CCCATAGTTCTCAAGGGCATT 57.697 47.619 0.00 0.00 31.81 3.56
328 329 1.839994 TCTGCCCATAGTTCTCAAGGG 59.160 52.381 0.00 0.00 42.55 3.95
329 330 3.634397 TTCTGCCCATAGTTCTCAAGG 57.366 47.619 0.00 0.00 0.00 3.61
330 331 5.065731 GTGATTTCTGCCCATAGTTCTCAAG 59.934 44.000 0.00 0.00 0.00 3.02
331 332 4.943705 GTGATTTCTGCCCATAGTTCTCAA 59.056 41.667 0.00 0.00 0.00 3.02
332 333 4.019411 TGTGATTTCTGCCCATAGTTCTCA 60.019 41.667 0.00 0.00 0.00 3.27
333 334 4.517285 TGTGATTTCTGCCCATAGTTCTC 58.483 43.478 0.00 0.00 0.00 2.87
334 335 4.225942 TCTGTGATTTCTGCCCATAGTTCT 59.774 41.667 0.00 0.00 0.00 3.01
335 336 4.517285 TCTGTGATTTCTGCCCATAGTTC 58.483 43.478 0.00 0.00 0.00 3.01
336 337 4.574674 TCTGTGATTTCTGCCCATAGTT 57.425 40.909 0.00 0.00 0.00 2.24
337 338 4.785346 ATCTGTGATTTCTGCCCATAGT 57.215 40.909 0.00 0.00 0.00 2.12
338 339 5.591472 TCAAATCTGTGATTTCTGCCCATAG 59.409 40.000 2.92 0.00 0.00 2.23
339 340 5.357878 GTCAAATCTGTGATTTCTGCCCATA 59.642 40.000 2.92 0.00 0.00 2.74
340 341 4.159135 GTCAAATCTGTGATTTCTGCCCAT 59.841 41.667 2.92 0.00 0.00 4.00
341 342 3.507233 GTCAAATCTGTGATTTCTGCCCA 59.493 43.478 2.92 0.00 0.00 5.36
342 343 3.119352 GGTCAAATCTGTGATTTCTGCCC 60.119 47.826 2.92 0.00 0.00 5.36
372 373 7.581213 ACAGGTCAGTTTGTGATTTGATTTA 57.419 32.000 0.00 0.00 37.56 1.40
464 465 2.615227 CTAAGGGGAAGGCGCTGCAT 62.615 60.000 7.64 0.00 0.00 3.96
657 658 2.466547 TCAGATCTGAGAGGGATGCA 57.533 50.000 21.67 0.00 34.14 3.96
873 926 7.605449 AGGGTTTCAACAACAAGAATCATATG 58.395 34.615 0.00 0.00 0.00 1.78
982 1036 7.171337 CCAAACCATCCTTACAATTTCAAACAG 59.829 37.037 0.00 0.00 0.00 3.16
1194 1248 4.521338 TCGTAAGGCATGGCAAGACCAA 62.521 50.000 22.64 3.42 46.91 3.67
1200 1254 1.667236 CTCATCGTAAGGCATGGCAA 58.333 50.000 22.64 6.11 38.47 4.52
1404 1458 1.721664 CCCGTCGATAGCAAGACCGA 61.722 60.000 0.00 0.00 34.10 4.69
1606 1660 4.135306 GGATCACATCATCAGTTGCATCT 58.865 43.478 0.00 0.00 0.00 2.90
1771 1825 4.479619 CAACTACCTGTCGGTACAAGTAC 58.520 47.826 1.77 1.77 43.29 2.73
1946 2000 4.400961 GGCAGACGCTCCCAGCTT 62.401 66.667 0.00 0.00 39.60 3.74
2519 2573 1.202580 CCGTTGCCTTCTCCTATCCAG 60.203 57.143 0.00 0.00 0.00 3.86
2805 2859 3.350219 AGTTAATCACCGGAACAGCAT 57.650 42.857 9.46 0.00 0.00 3.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.