Multiple sequence alignment - TraesCS4A01G173900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G173900 chr4A 100.000 5111 0 0 1 5111 443480562 443485672 0.000000e+00 9439.0
1 TraesCS4A01G173900 chr4A 85.514 214 19 6 1 210 151318179 151317974 4.010000e-51 213.0
2 TraesCS4A01G173900 chr4A 78.992 119 18 4 1695 1806 708683323 708683205 1.970000e-09 75.0
3 TraesCS4A01G173900 chr4D 97.110 3944 91 15 563 4498 126647519 126643591 0.000000e+00 6630.0
4 TraesCS4A01G173900 chr4D 89.811 265 25 1 206 470 126685598 126685336 6.340000e-89 339.0
5 TraesCS4A01G173900 chr4D 89.623 106 8 3 473 577 126647652 126647549 1.150000e-26 132.0
6 TraesCS4A01G173900 chr3D 89.412 595 61 2 4518 5111 285577203 285576610 0.000000e+00 749.0
7 TraesCS4A01G173900 chr3D 85.761 611 68 5 4519 5111 285651847 285651238 3.360000e-176 628.0
8 TraesCS4A01G173900 chr3D 83.980 593 94 1 4519 5111 396169136 396168545 7.430000e-158 568.0
9 TraesCS4A01G173900 chr6D 86.486 592 73 6 4519 5108 233275774 233276360 1.200000e-180 643.0
10 TraesCS4A01G173900 chr6D 82.810 605 83 7 4525 5111 233264487 233265088 5.860000e-144 521.0
11 TraesCS4A01G173900 chr6D 86.111 180 20 3 6 180 382127726 382127547 6.760000e-44 189.0
12 TraesCS4A01G173900 chr6D 83.929 112 18 0 359 470 71517106 71516995 1.950000e-19 108.0
13 TraesCS4A01G173900 chr6D 97.561 41 1 0 1689 1729 86642551 86642591 2.550000e-08 71.3
14 TraesCS4A01G173900 chr5D 85.210 595 72 9 4519 5111 183316983 183316403 9.470000e-167 597.0
15 TraesCS4A01G173900 chr5D 83.085 603 90 9 4519 5111 330905704 330906304 5.820000e-149 538.0
16 TraesCS4A01G173900 chr3A 89.462 465 49 0 4647 5111 695139727 695139263 5.700000e-164 588.0
17 TraesCS4A01G173900 chr7D 84.202 595 85 8 4519 5109 297822204 297821615 2.060000e-158 569.0
18 TraesCS4A01G173900 chr7D 82.927 123 12 2 1692 1805 41935386 41935264 9.050000e-18 102.0
19 TraesCS4A01G173900 chr7D 83.186 113 17 2 4519 4630 159861433 159861322 9.050000e-18 102.0
20 TraesCS4A01G173900 chr7D 91.781 73 6 0 1733 1805 618877807 618877879 9.050000e-18 102.0
21 TraesCS4A01G173900 chr7D 82.787 122 12 2 1693 1805 427888675 427888554 3.260000e-17 100.0
22 TraesCS4A01G173900 chr1D 81.653 605 90 11 4521 5107 20140690 20140089 2.770000e-132 483.0
23 TraesCS4A01G173900 chr1D 81.518 606 89 13 4521 5107 20121877 20121276 1.290000e-130 477.0
24 TraesCS4A01G173900 chr1D 92.568 148 7 1 1 144 80862466 80862319 5.190000e-50 209.0
25 TraesCS4A01G173900 chr5A 92.233 206 12 1 1 202 553531041 553530836 6.470000e-74 289.0
26 TraesCS4A01G173900 chr5A 84.828 145 11 5 1688 1823 524028519 524028377 8.930000e-28 135.0
27 TraesCS4A01G173900 chr6B 92.818 181 9 1 7 183 410647842 410647662 5.080000e-65 259.0
28 TraesCS4A01G173900 chr6B 92.265 181 10 1 7 183 410180135 410179955 2.360000e-63 254.0
29 TraesCS4A01G173900 chr6B 86.124 209 24 3 6 209 49470432 49470224 2.400000e-53 220.0
30 TraesCS4A01G173900 chr6A 88.000 200 22 2 7 204 591429814 591429615 8.560000e-58 235.0
31 TraesCS4A01G173900 chr7B 87.222 180 15 5 36 209 377443518 377443695 1.120000e-46 198.0
32 TraesCS4A01G173900 chr7B 88.235 119 5 3 1692 1809 457403482 457403372 3.210000e-27 134.0
33 TraesCS4A01G173900 chr7B 100.000 37 0 0 1693 1729 361572331 361572295 9.180000e-08 69.4
34 TraesCS4A01G173900 chr7A 77.358 265 46 7 219 470 641434858 641435121 1.480000e-30 145.0
35 TraesCS4A01G173900 chr7A 90.411 73 7 0 1733 1805 124077505 124077577 4.210000e-16 97.1
36 TraesCS4A01G173900 chr4B 83.465 127 9 6 1692 1806 140891447 140891573 1.950000e-19 108.0
37 TraesCS4A01G173900 chr1B 90.123 81 8 0 1736 1816 658351074 658350994 7.000000e-19 106.0
38 TraesCS4A01G173900 chr1B 90.411 73 7 0 1733 1805 249233099 249233027 4.210000e-16 97.1
39 TraesCS4A01G173900 chr2B 89.157 83 9 0 1730 1812 195691143 195691225 2.520000e-18 104.0
40 TraesCS4A01G173900 chr3B 87.500 80 10 0 4521 4600 133465426 133465505 5.450000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G173900 chr4A 443480562 443485672 5110 False 9439 9439 100.0000 1 5111 1 chr4A.!!$F1 5110
1 TraesCS4A01G173900 chr4D 126643591 126647652 4061 True 3381 6630 93.3665 473 4498 2 chr4D.!!$R2 4025
2 TraesCS4A01G173900 chr3D 285576610 285577203 593 True 749 749 89.4120 4518 5111 1 chr3D.!!$R1 593
3 TraesCS4A01G173900 chr3D 285651238 285651847 609 True 628 628 85.7610 4519 5111 1 chr3D.!!$R2 592
4 TraesCS4A01G173900 chr3D 396168545 396169136 591 True 568 568 83.9800 4519 5111 1 chr3D.!!$R3 592
5 TraesCS4A01G173900 chr6D 233275774 233276360 586 False 643 643 86.4860 4519 5108 1 chr6D.!!$F3 589
6 TraesCS4A01G173900 chr6D 233264487 233265088 601 False 521 521 82.8100 4525 5111 1 chr6D.!!$F2 586
7 TraesCS4A01G173900 chr5D 183316403 183316983 580 True 597 597 85.2100 4519 5111 1 chr5D.!!$R1 592
8 TraesCS4A01G173900 chr5D 330905704 330906304 600 False 538 538 83.0850 4519 5111 1 chr5D.!!$F1 592
9 TraesCS4A01G173900 chr7D 297821615 297822204 589 True 569 569 84.2020 4519 5109 1 chr7D.!!$R3 590
10 TraesCS4A01G173900 chr1D 20140089 20140690 601 True 483 483 81.6530 4521 5107 1 chr1D.!!$R2 586
11 TraesCS4A01G173900 chr1D 20121276 20121877 601 True 477 477 81.5180 4521 5107 1 chr1D.!!$R1 586

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
861 909 0.033920 CTCCAAAAGCACCCAAAGGC 59.966 55.000 0.0 0.0 36.11 4.35 F
1708 1757 0.406750 TTGTACTCCCTCTGTCCCGA 59.593 55.000 0.0 0.0 0.00 5.14 F
2567 2616 2.227388 CGCTTCAAGGCTGAGAAATTGT 59.773 45.455 4.5 0.0 31.69 2.71 F
3818 3869 0.727398 CCGAAATGCTCCGAAGAACC 59.273 55.000 0.0 0.0 0.00 3.62 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2818 2867 0.613260 AGAACCACTATGCCGCAAGA 59.387 50.0 0.00 0.0 43.02 3.02 R
2965 3014 0.977108 TGGCAAGCCATGGGGATTTC 60.977 55.0 15.13 0.0 40.72 2.17 R
3950 4001 0.042535 CGCGAATGTCACACGTTTGT 60.043 50.0 0.00 0.0 32.36 2.83 R
4661 4789 0.468400 TGCAAACTTTAAGGGGGCGT 60.468 50.0 0.00 0.0 0.00 5.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.189618 TCTCAGTATCTGCCATGCTTG 57.810 47.619 0.00 0.00 0.00 4.01
21 22 2.502947 TCTCAGTATCTGCCATGCTTGT 59.497 45.455 0.00 0.00 0.00 3.16
22 23 2.612672 CTCAGTATCTGCCATGCTTGTG 59.387 50.000 0.00 0.00 0.00 3.33
23 24 2.026915 TCAGTATCTGCCATGCTTGTGT 60.027 45.455 0.00 0.00 0.00 3.72
24 25 3.197549 TCAGTATCTGCCATGCTTGTGTA 59.802 43.478 0.00 0.00 0.00 2.90
25 26 4.132336 CAGTATCTGCCATGCTTGTGTAT 58.868 43.478 0.00 0.00 0.00 2.29
26 27 5.070313 TCAGTATCTGCCATGCTTGTGTATA 59.930 40.000 0.00 0.00 0.00 1.47
27 28 5.759763 CAGTATCTGCCATGCTTGTGTATAA 59.240 40.000 0.00 0.00 0.00 0.98
28 29 6.260714 CAGTATCTGCCATGCTTGTGTATAAA 59.739 38.462 0.00 0.00 0.00 1.40
29 30 7.000472 AGTATCTGCCATGCTTGTGTATAAAT 59.000 34.615 0.00 0.00 0.00 1.40
30 31 5.503662 TCTGCCATGCTTGTGTATAAATG 57.496 39.130 0.00 0.00 0.00 2.32
31 32 4.949238 TCTGCCATGCTTGTGTATAAATGT 59.051 37.500 0.00 0.00 0.00 2.71
32 33 5.418524 TCTGCCATGCTTGTGTATAAATGTT 59.581 36.000 0.00 0.00 0.00 2.71
33 34 6.601217 TCTGCCATGCTTGTGTATAAATGTTA 59.399 34.615 0.00 0.00 0.00 2.41
34 35 7.285172 TCTGCCATGCTTGTGTATAAATGTTAT 59.715 33.333 0.00 0.00 0.00 1.89
35 36 7.424803 TGCCATGCTTGTGTATAAATGTTATC 58.575 34.615 0.00 0.00 0.00 1.75
36 37 7.067981 TGCCATGCTTGTGTATAAATGTTATCA 59.932 33.333 0.00 0.00 0.00 2.15
37 38 7.920151 GCCATGCTTGTGTATAAATGTTATCAA 59.080 33.333 0.00 0.00 0.00 2.57
38 39 9.800433 CCATGCTTGTGTATAAATGTTATCAAA 57.200 29.630 0.00 0.00 0.00 2.69
52 53 9.487790 AAATGTTATCAAAATGACCAAATTCGT 57.512 25.926 0.00 0.00 0.00 3.85
53 54 9.487790 AATGTTATCAAAATGACCAAATTCGTT 57.512 25.926 0.00 0.00 0.00 3.85
54 55 8.879342 TGTTATCAAAATGACCAAATTCGTTT 57.121 26.923 0.00 0.00 36.47 3.60
55 56 9.319143 TGTTATCAAAATGACCAAATTCGTTTT 57.681 25.926 0.00 0.00 42.77 2.43
60 61 8.279103 TCAAAATGACCAAATTCGTTTTATTGC 58.721 29.630 3.40 0.00 40.96 3.56
61 62 6.388259 AATGACCAAATTCGTTTTATTGCG 57.612 33.333 0.00 0.00 0.00 4.85
62 63 4.861210 TGACCAAATTCGTTTTATTGCGT 58.139 34.783 0.00 0.00 0.00 5.24
63 64 4.912766 TGACCAAATTCGTTTTATTGCGTC 59.087 37.500 0.00 0.00 0.00 5.19
64 65 5.116069 ACCAAATTCGTTTTATTGCGTCT 57.884 34.783 0.00 0.00 0.00 4.18
65 66 5.151389 ACCAAATTCGTTTTATTGCGTCTC 58.849 37.500 0.00 0.00 0.00 3.36
66 67 5.150683 CCAAATTCGTTTTATTGCGTCTCA 58.849 37.500 0.00 0.00 0.00 3.27
67 68 5.059221 CCAAATTCGTTTTATTGCGTCTCAC 59.941 40.000 0.00 0.00 0.00 3.51
68 69 3.799137 TTCGTTTTATTGCGTCTCACC 57.201 42.857 0.00 0.00 0.00 4.02
69 70 2.756829 TCGTTTTATTGCGTCTCACCA 58.243 42.857 0.00 0.00 0.00 4.17
70 71 3.132160 TCGTTTTATTGCGTCTCACCAA 58.868 40.909 0.00 0.00 0.00 3.67
71 72 3.560481 TCGTTTTATTGCGTCTCACCAAA 59.440 39.130 0.00 0.00 0.00 3.28
72 73 3.662186 CGTTTTATTGCGTCTCACCAAAC 59.338 43.478 0.00 0.00 0.00 2.93
73 74 4.602995 GTTTTATTGCGTCTCACCAAACA 58.397 39.130 0.00 0.00 0.00 2.83
74 75 3.889196 TTATTGCGTCTCACCAAACAC 57.111 42.857 0.00 0.00 0.00 3.32
75 76 1.967319 ATTGCGTCTCACCAAACACT 58.033 45.000 0.00 0.00 0.00 3.55
76 77 1.295792 TTGCGTCTCACCAAACACTC 58.704 50.000 0.00 0.00 0.00 3.51
77 78 0.176910 TGCGTCTCACCAAACACTCA 59.823 50.000 0.00 0.00 0.00 3.41
78 79 1.295792 GCGTCTCACCAAACACTCAA 58.704 50.000 0.00 0.00 0.00 3.02
79 80 1.668751 GCGTCTCACCAAACACTCAAA 59.331 47.619 0.00 0.00 0.00 2.69
80 81 2.290641 GCGTCTCACCAAACACTCAAAT 59.709 45.455 0.00 0.00 0.00 2.32
81 82 3.849645 GCGTCTCACCAAACACTCAAATG 60.850 47.826 0.00 0.00 0.00 2.32
82 83 3.312421 CGTCTCACCAAACACTCAAATGT 59.688 43.478 0.00 0.00 0.00 2.71
83 84 4.509970 CGTCTCACCAAACACTCAAATGTA 59.490 41.667 0.00 0.00 30.75 2.29
84 85 5.007234 CGTCTCACCAAACACTCAAATGTAA 59.993 40.000 0.00 0.00 30.75 2.41
85 86 6.199393 GTCTCACCAAACACTCAAATGTAAC 58.801 40.000 0.00 0.00 30.75 2.50
86 87 5.298276 TCTCACCAAACACTCAAATGTAACC 59.702 40.000 0.00 0.00 30.75 2.85
87 88 4.950475 TCACCAAACACTCAAATGTAACCA 59.050 37.500 0.00 0.00 30.75 3.67
88 89 5.596361 TCACCAAACACTCAAATGTAACCAT 59.404 36.000 0.00 0.00 30.75 3.55
89 90 6.097554 TCACCAAACACTCAAATGTAACCATT 59.902 34.615 0.00 0.00 43.14 3.16
90 91 6.420604 CACCAAACACTCAAATGTAACCATTC 59.579 38.462 0.00 0.00 40.42 2.67
91 92 5.925969 CCAAACACTCAAATGTAACCATTCC 59.074 40.000 0.00 0.00 40.42 3.01
92 93 6.462207 CCAAACACTCAAATGTAACCATTCCA 60.462 38.462 0.00 0.00 40.42 3.53
93 94 6.916360 AACACTCAAATGTAACCATTCCAT 57.084 33.333 0.00 0.00 40.42 3.41
94 95 6.916360 ACACTCAAATGTAACCATTCCATT 57.084 33.333 0.00 0.00 40.42 3.16
95 96 6.924111 ACACTCAAATGTAACCATTCCATTC 58.076 36.000 0.00 0.00 40.42 2.67
96 97 6.071391 ACACTCAAATGTAACCATTCCATTCC 60.071 38.462 0.00 0.00 40.42 3.01
97 98 6.015918 ACTCAAATGTAACCATTCCATTCCA 58.984 36.000 0.00 0.00 40.42 3.53
98 99 6.669154 ACTCAAATGTAACCATTCCATTCCAT 59.331 34.615 0.00 0.00 40.42 3.41
99 100 7.111247 TCAAATGTAACCATTCCATTCCATC 57.889 36.000 0.00 0.00 40.42 3.51
100 101 6.896860 TCAAATGTAACCATTCCATTCCATCT 59.103 34.615 0.00 0.00 40.42 2.90
101 102 8.058235 TCAAATGTAACCATTCCATTCCATCTA 58.942 33.333 0.00 0.00 40.42 1.98
102 103 8.863086 CAAATGTAACCATTCCATTCCATCTAT 58.137 33.333 0.00 0.00 40.42 1.98
103 104 9.438163 AAATGTAACCATTCCATTCCATCTATT 57.562 29.630 0.00 0.00 40.42 1.73
104 105 7.822161 TGTAACCATTCCATTCCATCTATTG 57.178 36.000 0.00 0.00 0.00 1.90
105 106 5.796424 AACCATTCCATTCCATCTATTGC 57.204 39.130 0.00 0.00 0.00 3.56
106 107 4.154942 ACCATTCCATTCCATCTATTGCC 58.845 43.478 0.00 0.00 0.00 4.52
107 108 4.140853 ACCATTCCATTCCATCTATTGCCT 60.141 41.667 0.00 0.00 0.00 4.75
108 109 4.461781 CCATTCCATTCCATCTATTGCCTC 59.538 45.833 0.00 0.00 0.00 4.70
109 110 4.794311 TTCCATTCCATCTATTGCCTCA 57.206 40.909 0.00 0.00 0.00 3.86
110 111 4.794311 TCCATTCCATCTATTGCCTCAA 57.206 40.909 0.00 0.00 0.00 3.02
111 112 4.464008 TCCATTCCATCTATTGCCTCAAC 58.536 43.478 0.00 0.00 0.00 3.18
112 113 3.571401 CCATTCCATCTATTGCCTCAACC 59.429 47.826 0.00 0.00 0.00 3.77
113 114 4.209538 CATTCCATCTATTGCCTCAACCA 58.790 43.478 0.00 0.00 0.00 3.67
114 115 4.314522 TTCCATCTATTGCCTCAACCAA 57.685 40.909 0.00 0.00 0.00 3.67
115 116 4.314522 TCCATCTATTGCCTCAACCAAA 57.685 40.909 0.00 0.00 0.00 3.28
116 117 4.016444 TCCATCTATTGCCTCAACCAAAC 58.984 43.478 0.00 0.00 0.00 2.93
117 118 3.763360 CCATCTATTGCCTCAACCAAACA 59.237 43.478 0.00 0.00 0.00 2.83
118 119 4.403432 CCATCTATTGCCTCAACCAAACAT 59.597 41.667 0.00 0.00 0.00 2.71
119 120 5.593909 CCATCTATTGCCTCAACCAAACATA 59.406 40.000 0.00 0.00 0.00 2.29
120 121 6.096705 CCATCTATTGCCTCAACCAAACATAA 59.903 38.462 0.00 0.00 0.00 1.90
121 122 6.757897 TCTATTGCCTCAACCAAACATAAG 57.242 37.500 0.00 0.00 0.00 1.73
122 123 6.480763 TCTATTGCCTCAACCAAACATAAGA 58.519 36.000 0.00 0.00 0.00 2.10
123 124 6.945435 TCTATTGCCTCAACCAAACATAAGAA 59.055 34.615 0.00 0.00 0.00 2.52
124 125 4.846779 TGCCTCAACCAAACATAAGAAC 57.153 40.909 0.00 0.00 0.00 3.01
125 126 3.252215 TGCCTCAACCAAACATAAGAACG 59.748 43.478 0.00 0.00 0.00 3.95
126 127 3.365969 GCCTCAACCAAACATAAGAACGG 60.366 47.826 0.00 0.00 0.00 4.44
127 128 4.069304 CCTCAACCAAACATAAGAACGGA 58.931 43.478 0.00 0.00 0.00 4.69
128 129 4.517453 CCTCAACCAAACATAAGAACGGAA 59.483 41.667 0.00 0.00 0.00 4.30
129 130 5.427036 TCAACCAAACATAAGAACGGAAC 57.573 39.130 0.00 0.00 0.00 3.62
130 131 4.276431 TCAACCAAACATAAGAACGGAACC 59.724 41.667 0.00 0.00 0.00 3.62
131 132 2.809696 ACCAAACATAAGAACGGAACCG 59.190 45.455 11.83 11.83 46.03 4.44
132 133 3.068560 CCAAACATAAGAACGGAACCGA 58.931 45.455 20.14 0.00 42.83 4.69
133 134 3.120442 CCAAACATAAGAACGGAACCGAC 60.120 47.826 20.14 12.48 42.83 4.79
134 135 2.375173 ACATAAGAACGGAACCGACC 57.625 50.000 20.14 10.28 42.83 4.79
135 136 1.066645 ACATAAGAACGGAACCGACCC 60.067 52.381 20.14 7.97 42.83 4.46
136 137 1.066716 CATAAGAACGGAACCGACCCA 60.067 52.381 20.14 1.60 42.83 4.51
137 138 1.269012 TAAGAACGGAACCGACCCAT 58.731 50.000 20.14 4.73 42.83 4.00
138 139 0.399075 AAGAACGGAACCGACCCATT 59.601 50.000 20.14 3.04 42.83 3.16
139 140 0.036671 AGAACGGAACCGACCCATTC 60.037 55.000 20.14 11.92 42.83 2.67
140 141 0.036671 GAACGGAACCGACCCATTCT 60.037 55.000 20.14 0.00 42.83 2.40
141 142 1.205417 GAACGGAACCGACCCATTCTA 59.795 52.381 20.14 0.00 42.83 2.10
142 143 0.822164 ACGGAACCGACCCATTCTAG 59.178 55.000 20.14 0.00 42.83 2.43
143 144 0.822164 CGGAACCGACCCATTCTAGT 59.178 55.000 7.53 0.00 42.83 2.57
144 145 1.470979 CGGAACCGACCCATTCTAGTG 60.471 57.143 7.53 0.00 42.83 2.74
145 146 1.134491 GGAACCGACCCATTCTAGTGG 60.134 57.143 0.00 0.00 39.05 4.00
146 147 1.829222 GAACCGACCCATTCTAGTGGA 59.171 52.381 0.91 0.00 42.02 4.02
147 148 1.946984 ACCGACCCATTCTAGTGGAA 58.053 50.000 0.91 0.00 42.02 3.53
148 149 2.478292 ACCGACCCATTCTAGTGGAAT 58.522 47.619 0.91 0.00 44.66 3.01
149 150 3.649843 ACCGACCCATTCTAGTGGAATA 58.350 45.455 0.87 0.00 42.20 1.75
150 151 3.641906 ACCGACCCATTCTAGTGGAATAG 59.358 47.826 0.87 0.00 42.20 1.73
151 152 3.895656 CCGACCCATTCTAGTGGAATAGA 59.104 47.826 0.87 0.00 42.20 1.98
152 153 4.344102 CCGACCCATTCTAGTGGAATAGAA 59.656 45.833 0.87 0.00 43.89 2.10
161 162 7.675161 TTCTAGTGGAATAGAATGTCATGGA 57.325 36.000 0.00 0.00 36.97 3.41
162 163 7.675161 TCTAGTGGAATAGAATGTCATGGAA 57.325 36.000 0.00 0.00 0.00 3.53
163 164 7.500992 TCTAGTGGAATAGAATGTCATGGAAC 58.499 38.462 0.00 0.00 0.00 3.62
164 165 5.440610 AGTGGAATAGAATGTCATGGAACC 58.559 41.667 0.00 0.00 0.00 3.62
165 166 5.044919 AGTGGAATAGAATGTCATGGAACCA 60.045 40.000 0.00 0.00 0.00 3.67
166 167 5.829924 GTGGAATAGAATGTCATGGAACCAT 59.170 40.000 0.00 0.00 37.08 3.55
179 180 5.603170 ATGGAACCATGACATTTCATTCC 57.397 39.130 5.47 5.97 40.79 3.01
180 181 4.414677 TGGAACCATGACATTTCATTCCA 58.585 39.130 10.15 10.15 42.42 3.53
181 182 5.024785 TGGAACCATGACATTTCATTCCAT 58.975 37.500 10.15 0.00 40.90 3.41
182 183 5.484644 TGGAACCATGACATTTCATTCCATT 59.515 36.000 10.15 0.00 40.90 3.16
183 184 6.013553 TGGAACCATGACATTTCATTCCATTT 60.014 34.615 10.15 0.00 40.90 2.32
184 185 6.536224 GGAACCATGACATTTCATTCCATTTC 59.464 38.462 7.54 0.86 40.79 2.17
185 186 5.653507 ACCATGACATTTCATTCCATTTCG 58.346 37.500 0.00 0.00 40.79 3.46
186 187 5.185635 ACCATGACATTTCATTCCATTTCGT 59.814 36.000 0.00 0.00 40.79 3.85
187 188 6.101332 CCATGACATTTCATTCCATTTCGTT 58.899 36.000 0.00 0.00 40.79 3.85
188 189 6.591062 CCATGACATTTCATTCCATTTCGTTT 59.409 34.615 0.00 0.00 40.79 3.60
189 190 7.201461 CCATGACATTTCATTCCATTTCGTTTC 60.201 37.037 0.00 0.00 40.79 2.78
190 191 6.743110 TGACATTTCATTCCATTTCGTTTCA 58.257 32.000 0.00 0.00 0.00 2.69
191 192 6.640499 TGACATTTCATTCCATTTCGTTTCAC 59.360 34.615 0.00 0.00 0.00 3.18
192 193 5.629020 ACATTTCATTCCATTTCGTTTCACG 59.371 36.000 0.00 0.00 44.19 4.35
203 204 3.579147 TCGTTTCACGATCAAACACAC 57.421 42.857 7.63 0.00 46.73 3.82
204 205 3.191669 TCGTTTCACGATCAAACACACT 58.808 40.909 7.63 0.00 46.73 3.55
205 206 3.244345 TCGTTTCACGATCAAACACACTC 59.756 43.478 7.63 0.00 46.73 3.51
206 207 3.245284 CGTTTCACGATCAAACACACTCT 59.755 43.478 7.63 0.00 46.05 3.24
207 208 4.443063 CGTTTCACGATCAAACACACTCTA 59.557 41.667 7.63 0.00 46.05 2.43
208 209 5.051307 CGTTTCACGATCAAACACACTCTAA 60.051 40.000 7.63 0.00 46.05 2.10
209 210 6.508880 CGTTTCACGATCAAACACACTCTAAA 60.509 38.462 7.63 0.00 46.05 1.85
210 211 7.352739 GTTTCACGATCAAACACACTCTAAAT 58.647 34.615 0.00 0.00 34.43 1.40
211 212 8.492748 GTTTCACGATCAAACACACTCTAAATA 58.507 33.333 0.00 0.00 34.43 1.40
212 213 7.812309 TCACGATCAAACACACTCTAAATAG 57.188 36.000 0.00 0.00 0.00 1.73
213 214 7.375834 TCACGATCAAACACACTCTAAATAGT 58.624 34.615 0.00 0.00 0.00 2.12
214 215 7.870954 TCACGATCAAACACACTCTAAATAGTT 59.129 33.333 0.00 0.00 0.00 2.24
215 216 8.495949 CACGATCAAACACACTCTAAATAGTTT 58.504 33.333 0.00 0.00 0.00 2.66
216 217 9.052759 ACGATCAAACACACTCTAAATAGTTTT 57.947 29.630 0.00 0.00 0.00 2.43
217 218 9.530129 CGATCAAACACACTCTAAATAGTTTTC 57.470 33.333 0.00 0.00 0.00 2.29
237 238 9.856162 AGTTTTCAATAGGAAGGTAGTACAAAA 57.144 29.630 2.06 0.00 36.72 2.44
246 247 8.208575 AGGAAGGTAGTACAAAAAGAATCTCT 57.791 34.615 2.06 0.00 0.00 3.10
247 248 9.322769 AGGAAGGTAGTACAAAAAGAATCTCTA 57.677 33.333 2.06 0.00 0.00 2.43
251 252 9.495382 AGGTAGTACAAAAAGAATCTCTATCCT 57.505 33.333 2.06 0.00 0.00 3.24
258 259 8.465201 ACAAAAAGAATCTCTATCCTTGATTGC 58.535 33.333 0.00 0.00 31.49 3.56
259 260 8.464404 CAAAAAGAATCTCTATCCTTGATTGCA 58.536 33.333 0.00 0.00 31.49 4.08
260 261 8.763984 AAAAGAATCTCTATCCTTGATTGCAT 57.236 30.769 0.00 0.00 31.49 3.96
261 262 7.747155 AAGAATCTCTATCCTTGATTGCATG 57.253 36.000 0.00 0.00 31.49 4.06
262 263 5.706369 AGAATCTCTATCCTTGATTGCATGC 59.294 40.000 11.82 11.82 31.49 4.06
263 264 4.426736 TCTCTATCCTTGATTGCATGCA 57.573 40.909 18.46 18.46 0.00 3.96
264 265 4.132336 TCTCTATCCTTGATTGCATGCAC 58.868 43.478 22.58 10.94 0.00 4.57
265 266 4.135306 CTCTATCCTTGATTGCATGCACT 58.865 43.478 22.58 16.46 0.00 4.40
266 267 4.132336 TCTATCCTTGATTGCATGCACTC 58.868 43.478 26.32 26.32 0.00 3.51
267 268 2.203470 TCCTTGATTGCATGCACTCA 57.797 45.000 30.35 30.35 34.54 3.41
268 269 1.814394 TCCTTGATTGCATGCACTCAC 59.186 47.619 32.90 19.08 35.78 3.51
269 270 1.542472 CCTTGATTGCATGCACTCACA 59.458 47.619 32.90 23.44 35.78 3.58
270 271 2.165641 CCTTGATTGCATGCACTCACAT 59.834 45.455 32.90 19.20 35.78 3.21
271 272 3.368013 CCTTGATTGCATGCACTCACATT 60.368 43.478 32.90 8.87 35.78 2.71
272 273 3.945981 TGATTGCATGCACTCACATTT 57.054 38.095 30.35 6.06 32.03 2.32
273 274 3.840468 TGATTGCATGCACTCACATTTC 58.160 40.909 30.35 13.80 32.03 2.17
274 275 3.508402 TGATTGCATGCACTCACATTTCT 59.492 39.130 30.35 0.00 32.03 2.52
275 276 3.564235 TTGCATGCACTCACATTTCTC 57.436 42.857 22.58 0.00 0.00 2.87
276 277 1.814394 TGCATGCACTCACATTTCTCC 59.186 47.619 18.46 0.00 0.00 3.71
277 278 2.089980 GCATGCACTCACATTTCTCCT 58.910 47.619 14.21 0.00 0.00 3.69
278 279 2.490903 GCATGCACTCACATTTCTCCTT 59.509 45.455 14.21 0.00 0.00 3.36
279 280 3.427233 GCATGCACTCACATTTCTCCTTC 60.427 47.826 14.21 0.00 0.00 3.46
280 281 3.777106 TGCACTCACATTTCTCCTTCT 57.223 42.857 0.00 0.00 0.00 2.85
281 282 3.668447 TGCACTCACATTTCTCCTTCTC 58.332 45.455 0.00 0.00 0.00 2.87
282 283 3.006247 GCACTCACATTTCTCCTTCTCC 58.994 50.000 0.00 0.00 0.00 3.71
283 284 3.557898 GCACTCACATTTCTCCTTCTCCA 60.558 47.826 0.00 0.00 0.00 3.86
284 285 4.645535 CACTCACATTTCTCCTTCTCCAA 58.354 43.478 0.00 0.00 0.00 3.53
285 286 5.251764 CACTCACATTTCTCCTTCTCCAAT 58.748 41.667 0.00 0.00 0.00 3.16
286 287 5.353678 CACTCACATTTCTCCTTCTCCAATC 59.646 44.000 0.00 0.00 0.00 2.67
287 288 4.848357 TCACATTTCTCCTTCTCCAATCC 58.152 43.478 0.00 0.00 0.00 3.01
288 289 3.950395 CACATTTCTCCTTCTCCAATCCC 59.050 47.826 0.00 0.00 0.00 3.85
289 290 3.593328 ACATTTCTCCTTCTCCAATCCCA 59.407 43.478 0.00 0.00 0.00 4.37
290 291 4.231426 ACATTTCTCCTTCTCCAATCCCAT 59.769 41.667 0.00 0.00 0.00 4.00
291 292 4.510167 TTTCTCCTTCTCCAATCCCATC 57.490 45.455 0.00 0.00 0.00 3.51
292 293 2.042464 TCTCCTTCTCCAATCCCATCG 58.958 52.381 0.00 0.00 0.00 3.84
293 294 1.765314 CTCCTTCTCCAATCCCATCGT 59.235 52.381 0.00 0.00 0.00 3.73
294 295 2.171448 CTCCTTCTCCAATCCCATCGTT 59.829 50.000 0.00 0.00 0.00 3.85
295 296 2.576191 TCCTTCTCCAATCCCATCGTTT 59.424 45.455 0.00 0.00 0.00 3.60
296 297 2.684881 CCTTCTCCAATCCCATCGTTTG 59.315 50.000 0.00 0.00 0.00 2.93
297 298 3.609853 CTTCTCCAATCCCATCGTTTGA 58.390 45.455 0.00 0.00 0.00 2.69
298 299 3.931907 TCTCCAATCCCATCGTTTGAT 57.068 42.857 0.00 0.00 34.28 2.57
299 300 4.235079 TCTCCAATCCCATCGTTTGATT 57.765 40.909 0.00 0.00 30.49 2.57
300 301 4.599041 TCTCCAATCCCATCGTTTGATTT 58.401 39.130 0.00 0.00 30.49 2.17
301 302 5.016173 TCTCCAATCCCATCGTTTGATTTT 58.984 37.500 0.00 0.00 30.49 1.82
302 303 6.184068 TCTCCAATCCCATCGTTTGATTTTA 58.816 36.000 0.00 0.00 30.49 1.52
303 304 6.833416 TCTCCAATCCCATCGTTTGATTTTAT 59.167 34.615 0.00 0.00 30.49 1.40
304 305 7.341769 TCTCCAATCCCATCGTTTGATTTTATT 59.658 33.333 0.00 0.00 30.49 1.40
305 306 7.488322 TCCAATCCCATCGTTTGATTTTATTC 58.512 34.615 0.00 0.00 30.49 1.75
306 307 7.341769 TCCAATCCCATCGTTTGATTTTATTCT 59.658 33.333 0.00 0.00 30.49 2.40
307 308 7.436080 CCAATCCCATCGTTTGATTTTATTCTG 59.564 37.037 0.00 0.00 30.49 3.02
308 309 6.449635 TCCCATCGTTTGATTTTATTCTGG 57.550 37.500 0.00 0.00 30.49 3.86
309 310 5.949354 TCCCATCGTTTGATTTTATTCTGGT 59.051 36.000 0.00 0.00 30.49 4.00
310 311 6.035843 CCCATCGTTTGATTTTATTCTGGTG 58.964 40.000 0.00 0.00 30.49 4.17
311 312 5.516339 CCATCGTTTGATTTTATTCTGGTGC 59.484 40.000 0.00 0.00 30.49 5.01
312 313 5.697473 TCGTTTGATTTTATTCTGGTGCA 57.303 34.783 0.00 0.00 0.00 4.57
313 314 6.078202 TCGTTTGATTTTATTCTGGTGCAA 57.922 33.333 0.00 0.00 0.00 4.08
314 315 6.686630 TCGTTTGATTTTATTCTGGTGCAAT 58.313 32.000 0.00 0.00 0.00 3.56
315 316 7.821652 TCGTTTGATTTTATTCTGGTGCAATA 58.178 30.769 0.00 0.00 0.00 1.90
316 317 8.300286 TCGTTTGATTTTATTCTGGTGCAATAA 58.700 29.630 0.00 0.00 0.00 1.40
317 318 8.586273 CGTTTGATTTTATTCTGGTGCAATAAG 58.414 33.333 0.00 0.00 29.50 1.73
318 319 9.638239 GTTTGATTTTATTCTGGTGCAATAAGA 57.362 29.630 0.00 0.00 29.50 2.10
327 328 7.759489 TTCTGGTGCAATAAGATTTAGTTGT 57.241 32.000 0.00 0.00 0.00 3.32
328 329 7.759489 TCTGGTGCAATAAGATTTAGTTGTT 57.241 32.000 0.00 0.00 0.00 2.83
329 330 8.177119 TCTGGTGCAATAAGATTTAGTTGTTT 57.823 30.769 0.00 0.00 0.00 2.83
330 331 8.637986 TCTGGTGCAATAAGATTTAGTTGTTTT 58.362 29.630 0.00 0.00 0.00 2.43
331 332 9.260002 CTGGTGCAATAAGATTTAGTTGTTTTT 57.740 29.630 0.00 0.00 0.00 1.94
360 361 6.332630 ACACCATTGATTATTTAGTTGCTGC 58.667 36.000 0.00 0.00 0.00 5.25
361 362 6.153340 ACACCATTGATTATTTAGTTGCTGCT 59.847 34.615 0.00 0.00 0.00 4.24
362 363 7.339212 ACACCATTGATTATTTAGTTGCTGCTA 59.661 33.333 0.00 0.00 0.00 3.49
363 364 8.190122 CACCATTGATTATTTAGTTGCTGCTAA 58.810 33.333 0.00 0.00 0.00 3.09
364 365 8.190784 ACCATTGATTATTTAGTTGCTGCTAAC 58.809 33.333 0.00 4.12 31.43 2.34
365 366 8.408601 CCATTGATTATTTAGTTGCTGCTAACT 58.591 33.333 17.22 17.22 43.03 2.24
368 369 8.433421 TGATTATTTAGTTGCTGCTAACTACC 57.567 34.615 17.96 8.77 41.46 3.18
369 370 8.265055 TGATTATTTAGTTGCTGCTAACTACCT 58.735 33.333 17.96 12.95 41.46 3.08
370 371 9.760077 GATTATTTAGTTGCTGCTAACTACCTA 57.240 33.333 17.96 12.30 41.46 3.08
374 375 8.488651 TTTAGTTGCTGCTAACTACCTAATTC 57.511 34.615 17.96 0.00 41.46 2.17
375 376 6.301169 AGTTGCTGCTAACTACCTAATTCT 57.699 37.500 13.31 0.00 39.03 2.40
376 377 6.712276 AGTTGCTGCTAACTACCTAATTCTT 58.288 36.000 13.31 0.00 39.03 2.52
377 378 6.819146 AGTTGCTGCTAACTACCTAATTCTTC 59.181 38.462 13.31 0.00 39.03 2.87
378 379 6.294361 TGCTGCTAACTACCTAATTCTTCA 57.706 37.500 0.00 0.00 0.00 3.02
379 380 6.707290 TGCTGCTAACTACCTAATTCTTCAA 58.293 36.000 0.00 0.00 0.00 2.69
380 381 6.818644 TGCTGCTAACTACCTAATTCTTCAAG 59.181 38.462 0.00 0.00 0.00 3.02
381 382 6.258947 GCTGCTAACTACCTAATTCTTCAAGG 59.741 42.308 0.00 0.00 36.42 3.61
382 383 6.650120 TGCTAACTACCTAATTCTTCAAGGG 58.350 40.000 0.00 0.00 34.52 3.95
383 384 5.527951 GCTAACTACCTAATTCTTCAAGGGC 59.472 44.000 0.00 0.00 34.52 5.19
384 385 5.514500 AACTACCTAATTCTTCAAGGGCA 57.486 39.130 0.00 0.00 34.52 5.36
385 386 5.717119 ACTACCTAATTCTTCAAGGGCAT 57.283 39.130 0.00 0.00 34.52 4.40
386 387 6.079712 ACTACCTAATTCTTCAAGGGCATT 57.920 37.500 0.00 0.00 34.52 3.56
387 388 6.494059 ACTACCTAATTCTTCAAGGGCATTT 58.506 36.000 0.00 0.00 34.52 2.32
388 389 6.954102 ACTACCTAATTCTTCAAGGGCATTTT 59.046 34.615 0.00 0.00 34.52 1.82
389 390 6.286240 ACCTAATTCTTCAAGGGCATTTTC 57.714 37.500 0.00 0.00 34.52 2.29
390 391 5.105756 ACCTAATTCTTCAAGGGCATTTTCG 60.106 40.000 0.00 0.00 34.52 3.46
391 392 4.871933 AATTCTTCAAGGGCATTTTCGT 57.128 36.364 0.00 0.00 0.00 3.85
392 393 3.915437 TTCTTCAAGGGCATTTTCGTC 57.085 42.857 0.00 0.00 0.00 4.20
393 394 2.159382 TCTTCAAGGGCATTTTCGTCC 58.841 47.619 0.00 0.00 0.00 4.79
394 395 1.885887 CTTCAAGGGCATTTTCGTCCA 59.114 47.619 0.00 0.00 30.91 4.02
395 396 1.988293 TCAAGGGCATTTTCGTCCAA 58.012 45.000 0.00 0.00 30.91 3.53
396 397 2.311463 TCAAGGGCATTTTCGTCCAAA 58.689 42.857 0.00 0.00 30.91 3.28
397 398 2.695666 TCAAGGGCATTTTCGTCCAAAA 59.304 40.909 0.00 0.00 38.38 2.44
398 399 3.323403 TCAAGGGCATTTTCGTCCAAAAT 59.677 39.130 0.00 0.00 44.25 1.82
399 400 3.592898 AGGGCATTTTCGTCCAAAATC 57.407 42.857 0.00 0.00 41.94 2.17
400 401 2.233676 AGGGCATTTTCGTCCAAAATCC 59.766 45.455 0.00 0.00 41.94 3.01
401 402 2.233676 GGGCATTTTCGTCCAAAATCCT 59.766 45.455 0.00 0.00 41.94 3.24
402 403 3.511699 GGCATTTTCGTCCAAAATCCTC 58.488 45.455 0.00 0.00 41.94 3.71
403 404 3.511699 GCATTTTCGTCCAAAATCCTCC 58.488 45.455 0.00 0.00 41.94 4.30
404 405 3.193479 GCATTTTCGTCCAAAATCCTCCT 59.807 43.478 0.00 0.00 41.94 3.69
405 406 4.321974 GCATTTTCGTCCAAAATCCTCCTT 60.322 41.667 0.00 0.00 41.94 3.36
406 407 5.105917 GCATTTTCGTCCAAAATCCTCCTTA 60.106 40.000 0.00 0.00 41.94 2.69
407 408 6.571537 GCATTTTCGTCCAAAATCCTCCTTAA 60.572 38.462 0.00 0.00 41.94 1.85
408 409 7.547227 CATTTTCGTCCAAAATCCTCCTTAAT 58.453 34.615 0.00 0.00 41.94 1.40
409 410 7.533289 TTTTCGTCCAAAATCCTCCTTAATT 57.467 32.000 0.00 0.00 0.00 1.40
410 411 6.753107 TTCGTCCAAAATCCTCCTTAATTC 57.247 37.500 0.00 0.00 0.00 2.17
411 412 6.062258 TCGTCCAAAATCCTCCTTAATTCT 57.938 37.500 0.00 0.00 0.00 2.40
412 413 5.880332 TCGTCCAAAATCCTCCTTAATTCTG 59.120 40.000 0.00 0.00 0.00 3.02
413 414 5.648092 CGTCCAAAATCCTCCTTAATTCTGT 59.352 40.000 0.00 0.00 0.00 3.41
414 415 6.403636 CGTCCAAAATCCTCCTTAATTCTGTG 60.404 42.308 0.00 0.00 0.00 3.66
415 416 5.418840 TCCAAAATCCTCCTTAATTCTGTGC 59.581 40.000 0.00 0.00 0.00 4.57
416 417 5.394553 CCAAAATCCTCCTTAATTCTGTGCC 60.395 44.000 0.00 0.00 0.00 5.01
417 418 4.870021 AATCCTCCTTAATTCTGTGCCT 57.130 40.909 0.00 0.00 0.00 4.75
418 419 4.870021 ATCCTCCTTAATTCTGTGCCTT 57.130 40.909 0.00 0.00 0.00 4.35
419 420 3.955471 TCCTCCTTAATTCTGTGCCTTG 58.045 45.455 0.00 0.00 0.00 3.61
420 421 3.019564 CCTCCTTAATTCTGTGCCTTGG 58.980 50.000 0.00 0.00 0.00 3.61
421 422 3.562176 CCTCCTTAATTCTGTGCCTTGGT 60.562 47.826 0.00 0.00 0.00 3.67
422 423 3.686016 TCCTTAATTCTGTGCCTTGGTC 58.314 45.455 0.00 0.00 0.00 4.02
423 424 3.073798 TCCTTAATTCTGTGCCTTGGTCA 59.926 43.478 0.00 0.00 0.00 4.02
424 425 3.191371 CCTTAATTCTGTGCCTTGGTCAC 59.809 47.826 7.09 7.09 35.14 3.67
425 426 1.620822 AATTCTGTGCCTTGGTCACC 58.379 50.000 10.19 0.00 33.71 4.02
426 427 0.478072 ATTCTGTGCCTTGGTCACCA 59.522 50.000 0.00 0.00 33.71 4.17
427 428 0.465460 TTCTGTGCCTTGGTCACCAC 60.465 55.000 0.00 0.00 30.78 4.16
428 429 2.203139 TGTGCCTTGGTCACCACG 60.203 61.111 0.00 0.00 30.78 4.94
429 430 3.660111 GTGCCTTGGTCACCACGC 61.660 66.667 0.00 1.16 30.78 5.34
430 431 4.947147 TGCCTTGGTCACCACGCC 62.947 66.667 11.79 0.00 30.78 5.68
433 434 4.263572 CTTGGTCACCACGCCCCA 62.264 66.667 0.00 0.00 30.78 4.96
434 435 3.783362 CTTGGTCACCACGCCCCAA 62.783 63.158 0.00 0.00 35.72 4.12
435 436 3.360423 TTGGTCACCACGCCCCAAA 62.360 57.895 0.00 0.00 34.17 3.28
436 437 2.519780 GGTCACCACGCCCCAAAA 60.520 61.111 0.00 0.00 0.00 2.44
437 438 2.128507 GGTCACCACGCCCCAAAAA 61.129 57.895 0.00 0.00 0.00 1.94
632 677 8.870160 TTTATTTTGCATCAAGATTTATCCCG 57.130 30.769 0.00 0.00 0.00 5.14
699 745 1.892209 ACGGGCGTGAAAAAGATTCT 58.108 45.000 0.00 0.00 0.00 2.40
750 796 1.068588 AGATATGCTCTGCGCCGTTTA 59.931 47.619 4.18 0.00 38.05 2.01
766 812 2.756755 GTTTAGTCGTCTCGTCTCGTC 58.243 52.381 0.00 0.00 0.00 4.20
774 820 0.736672 TCTCGTCTCGTCTCCGTCTG 60.737 60.000 0.00 0.00 35.01 3.51
778 824 1.964891 TCTCGTCTCCGTCTGCGTT 60.965 57.895 0.00 0.00 36.15 4.84
779 825 1.512310 CTCGTCTCCGTCTGCGTTC 60.512 63.158 0.00 0.00 36.15 3.95
786 832 0.387929 TCCGTCTGCGTTCAGTCTTT 59.612 50.000 0.00 0.00 41.10 2.52
793 839 1.305201 GCGTTCAGTCTTTTCCACCA 58.695 50.000 0.00 0.00 0.00 4.17
837 885 1.499007 TCTCCAGTTTTTGCTCCCCTT 59.501 47.619 0.00 0.00 0.00 3.95
855 903 1.882623 CTTGAGACTCCAAAAGCACCC 59.117 52.381 0.00 0.00 0.00 4.61
861 909 0.033920 CTCCAAAAGCACCCAAAGGC 59.966 55.000 0.00 0.00 36.11 4.35
901 949 4.365899 AAACGGTGAAGGTTTGAAGAAC 57.634 40.909 0.00 0.00 36.33 3.01
909 957 4.041691 TGAAGGTTTGAAGAACCCTAGAGG 59.958 45.833 4.41 0.00 41.18 3.69
927 975 1.954528 GCCATTGCCATCTCCATCG 59.045 57.895 0.00 0.00 0.00 3.84
1003 1051 1.395826 GCTACGAGGGAGAGGCATGT 61.396 60.000 0.00 0.00 0.00 3.21
1023 1071 3.015327 GTGCTCCAGATCTTTGCTCAAT 58.985 45.455 11.19 0.00 0.00 2.57
1068 1116 2.092429 TCTTGCAGGGTCAGTGTTTTCT 60.092 45.455 0.00 0.00 0.00 2.52
1114 1162 8.072321 TGCATTTATTTTGGGCTCTTATTACA 57.928 30.769 0.00 0.00 0.00 2.41
1145 1193 1.270550 CTTTGTTCCTGAAATGGCGCT 59.729 47.619 7.64 0.00 0.00 5.92
1217 1266 3.585748 TTTTTCGTCTTGCTGAGTTCG 57.414 42.857 0.00 0.00 0.00 3.95
1268 1317 2.091885 TCACTTTTGGGGCTGAAGTCTT 60.092 45.455 0.00 0.00 31.63 3.01
1270 1319 3.253432 CACTTTTGGGGCTGAAGTCTTAC 59.747 47.826 0.00 0.00 31.63 2.34
1274 1323 1.262640 GGGGCTGAAGTCTTACCCGA 61.263 60.000 10.32 0.00 41.83 5.14
1281 1330 5.164954 GCTGAAGTCTTACCCGATATCATC 58.835 45.833 3.12 0.00 0.00 2.92
1283 1332 5.144832 TGAAGTCTTACCCGATATCATCCA 58.855 41.667 3.12 0.00 0.00 3.41
1299 1348 6.760440 ATCATCCATGTAAGAGGAACATCT 57.240 37.500 0.00 0.00 37.48 2.90
1394 1443 4.716003 GCGTCTTGGCCTTACCTT 57.284 55.556 3.32 0.00 40.22 3.50
1510 1559 7.495135 ACATAAGGTTTTGCTTTTGGATTTG 57.505 32.000 0.00 0.00 0.00 2.32
1546 1595 1.295357 TGCGTGCGATTGTAGGTTGG 61.295 55.000 0.00 0.00 0.00 3.77
1592 1641 8.608844 AGATTAGTTTTAAGTTGTCTGGTCTG 57.391 34.615 0.00 0.00 0.00 3.51
1625 1674 1.872952 TGTCAGCTGTTTCACATTCCG 59.127 47.619 14.67 0.00 0.00 4.30
1696 1745 5.068591 ACATTTCCCTGGTGTTTTTGTACTC 59.931 40.000 0.00 0.00 0.00 2.59
1708 1757 0.406750 TTGTACTCCCTCTGTCCCGA 59.593 55.000 0.00 0.00 0.00 5.14
1748 1797 5.055642 TGTGAGGTATCTAGACACGTTTG 57.944 43.478 0.00 0.00 34.72 2.93
1764 1813 6.332504 CACGTTTGAGTGTTAGATACATCC 57.667 41.667 0.00 0.00 39.39 3.51
2418 2467 6.680810 TCTTTTGTAATGTCAAGCATCTTGG 58.319 36.000 6.71 0.00 36.67 3.61
2481 2530 6.016443 TGTGTCAGCATCATGTTTATTCACAA 60.016 34.615 0.00 0.00 0.00 3.33
2567 2616 2.227388 CGCTTCAAGGCTGAGAAATTGT 59.773 45.455 4.50 0.00 31.69 2.71
2683 2732 7.739995 TCTATATTGCATAGGACTGGCTAAT 57.260 36.000 0.00 0.00 0.00 1.73
2818 2867 5.880332 AGCATGGTTCAGAATTATTACACGT 59.120 36.000 0.00 0.00 0.00 4.49
2819 2868 6.037172 AGCATGGTTCAGAATTATTACACGTC 59.963 38.462 0.00 0.00 0.00 4.34
2825 2874 4.565166 TCAGAATTATTACACGTCTTGCGG 59.435 41.667 0.00 0.00 46.52 5.69
2965 3014 6.267699 TCAGTAATCATGGTATACTGACCCTG 59.732 42.308 21.71 6.91 46.34 4.45
3179 3229 5.312120 TCTCTGTAATTCAGACGACTTCC 57.688 43.478 0.00 0.00 46.77 3.46
3294 3344 3.356290 ACCCTGGTTTCATGCACTAATC 58.644 45.455 0.00 0.00 0.00 1.75
3378 3429 3.895041 CCAGTTTTGTACTTGGGGTCAAT 59.105 43.478 0.00 0.00 33.85 2.57
3406 3457 4.079253 GGCCAATTACAGACTCCTTTTGA 58.921 43.478 0.00 0.00 0.00 2.69
3447 3498 4.340894 TTTTGCTGCGTATTCAGATGTC 57.659 40.909 0.00 0.00 36.19 3.06
3525 3576 5.008415 GCCACTGGTTCTTGATTGATATCTG 59.992 44.000 3.98 0.00 0.00 2.90
3618 3669 3.196463 TGCTGTTTCAAAATGGCAAGTG 58.804 40.909 0.00 0.00 0.00 3.16
3638 3689 4.018960 AGTGGGCTATTGTTCTGATGTCTT 60.019 41.667 0.00 0.00 0.00 3.01
3656 3707 4.142534 TGTCTTGTATCGTGTACTGTAGGC 60.143 45.833 0.00 0.00 0.00 3.93
3671 3722 2.432146 TGTAGGCTGGCAAGTCATCTAG 59.568 50.000 3.38 0.00 0.00 2.43
3798 3849 2.146342 TCAAAAGAGCAGAAGAAGGCG 58.854 47.619 0.00 0.00 34.54 5.52
3818 3869 0.727398 CCGAAATGCTCCGAAGAACC 59.273 55.000 0.00 0.00 0.00 3.62
3819 3870 1.438651 CGAAATGCTCCGAAGAACCA 58.561 50.000 0.00 0.00 0.00 3.67
3854 3905 7.857885 ACTGAAAGATTCAAAAGAACTAAAGCG 59.142 33.333 0.00 0.00 39.58 4.68
3908 3959 3.997021 TCACTGAAAGATCGAAAAGAGCC 59.003 43.478 0.00 0.00 35.47 4.70
3948 3999 1.390463 GAACGTCAACCGAAGATGAGC 59.610 52.381 0.00 0.00 40.70 4.26
3950 4001 0.456142 CGTCAACCGAAGATGAGCGA 60.456 55.000 0.00 0.00 39.56 4.93
4089 4140 4.383052 CGCAGCTTTATAATCTTCGACGAT 59.617 41.667 0.00 0.00 0.00 3.73
4306 4357 2.726850 TTCTGACCTGTCGCGTCGTG 62.727 60.000 5.77 0.00 32.68 4.35
4345 4396 0.756903 AGTGGTCGTTTGCAGGTACT 59.243 50.000 0.00 0.00 43.88 2.73
4385 4436 1.110442 TGGTGGTGTTTTTGGAGCAG 58.890 50.000 0.00 0.00 0.00 4.24
4387 4438 1.754226 GGTGGTGTTTTTGGAGCAGAA 59.246 47.619 0.00 0.00 0.00 3.02
4392 4443 3.118775 GGTGTTTTTGGAGCAGAAAACCT 60.119 43.478 8.64 0.00 42.28 3.50
4393 4444 4.503910 GTGTTTTTGGAGCAGAAAACCTT 58.496 39.130 8.64 0.00 42.28 3.50
4394 4445 4.329801 GTGTTTTTGGAGCAGAAAACCTTG 59.670 41.667 8.64 0.00 42.28 3.61
4418 4469 7.426410 TGTTATTATTAGCTGGAAGAGTCGAG 58.574 38.462 0.00 0.00 34.07 4.04
4498 4549 5.161943 TCCTAAAAACTCTAAGCTCCCAC 57.838 43.478 0.00 0.00 0.00 4.61
4499 4550 4.844655 TCCTAAAAACTCTAAGCTCCCACT 59.155 41.667 0.00 0.00 0.00 4.00
4500 4551 4.938226 CCTAAAAACTCTAAGCTCCCACTG 59.062 45.833 0.00 0.00 0.00 3.66
4501 4552 4.439253 AAAAACTCTAAGCTCCCACTGT 57.561 40.909 0.00 0.00 0.00 3.55
4502 4553 3.686916 AAACTCTAAGCTCCCACTGTC 57.313 47.619 0.00 0.00 0.00 3.51
4503 4554 1.178276 ACTCTAAGCTCCCACTGTCG 58.822 55.000 0.00 0.00 0.00 4.35
4504 4555 0.457851 CTCTAAGCTCCCACTGTCGG 59.542 60.000 0.00 0.00 0.00 4.79
4505 4556 0.039180 TCTAAGCTCCCACTGTCGGA 59.961 55.000 0.00 0.00 0.00 4.55
4507 4558 0.970937 TAAGCTCCCACTGTCGGAGG 60.971 60.000 20.74 5.33 46.07 4.30
4508 4559 3.775654 GCTCCCACTGTCGGAGGG 61.776 72.222 20.74 7.85 46.07 4.30
4511 4562 3.727387 CCCACTGTCGGAGGGATT 58.273 61.111 8.46 0.00 46.94 3.01
4512 4563 1.221840 CCCACTGTCGGAGGGATTG 59.778 63.158 8.46 0.00 46.94 2.67
4513 4564 1.221840 CCACTGTCGGAGGGATTGG 59.778 63.158 0.00 0.00 0.00 3.16
4514 4565 1.553690 CCACTGTCGGAGGGATTGGT 61.554 60.000 0.00 0.00 0.00 3.67
4515 4566 1.191535 CACTGTCGGAGGGATTGGTA 58.808 55.000 0.00 0.00 0.00 3.25
4516 4567 1.137086 CACTGTCGGAGGGATTGGTAG 59.863 57.143 0.00 0.00 0.00 3.18
4523 4574 1.580059 GAGGGATTGGTAGTCACCCA 58.420 55.000 0.00 0.00 45.11 4.51
4555 4606 4.976925 CATCGGGGCTAGCTGCGG 62.977 72.222 15.72 2.03 44.05 5.69
4618 4690 1.826024 CTAGAAGACGGCATGCCCT 59.174 57.895 30.79 22.39 0.00 5.19
4640 4712 4.767255 AGGCGGCTTCAAGGAGCG 62.767 66.667 5.25 0.00 43.62 5.03
4695 4823 6.664428 AAGTTTGCACCCATTTACTACAAT 57.336 33.333 0.00 0.00 0.00 2.71
4731 4859 3.501911 AGTGCAACCTGCCACCCT 61.502 61.111 0.00 0.00 44.23 4.34
4741 4869 1.612146 TGCCACCCTCGAATCCAGA 60.612 57.895 0.00 0.00 0.00 3.86
4747 4876 3.434167 CCACCCTCGAATCCAGAATGAAT 60.434 47.826 0.00 0.00 39.69 2.57
4753 4882 2.947652 CGAATCCAGAATGAATGTGGCT 59.052 45.455 0.00 0.00 39.69 4.75
4763 4892 0.391130 GAATGTGGCTACAGTGCGGA 60.391 55.000 8.22 0.00 40.79 5.54
4771 4900 1.802880 GCTACAGTGCGGATGTACCAG 60.803 57.143 0.00 0.00 38.90 4.00
4779 4908 1.830145 GGATGTACCAGGCGGACAT 59.170 57.895 2.50 2.50 36.40 3.06
4904 5033 1.680522 CCCTACCTGTCTGCGAGCAT 61.681 60.000 0.00 0.00 0.00 3.79
4988 5121 1.574526 CCCTCCCCTTGGAATCTGCA 61.575 60.000 0.00 0.00 41.17 4.41
5038 5171 1.310216 TACAGTAAGCGCTCGCCAGA 61.310 55.000 12.06 0.00 43.17 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.502947 ACAAGCATGGCAGATACTGAGA 59.497 45.455 2.81 0.00 32.44 3.27
1 2 2.612672 CACAAGCATGGCAGATACTGAG 59.387 50.000 2.81 0.00 32.44 3.35
2 3 2.026915 ACACAAGCATGGCAGATACTGA 60.027 45.455 2.81 0.00 32.44 3.41
3 4 2.362736 ACACAAGCATGGCAGATACTG 58.637 47.619 0.00 0.00 34.12 2.74
4 5 2.795231 ACACAAGCATGGCAGATACT 57.205 45.000 0.00 0.00 0.00 2.12
5 6 6.618287 TTTATACACAAGCATGGCAGATAC 57.382 37.500 0.00 0.00 0.00 2.24
6 7 6.772233 ACATTTATACACAAGCATGGCAGATA 59.228 34.615 0.00 0.00 0.00 1.98
7 8 5.595542 ACATTTATACACAAGCATGGCAGAT 59.404 36.000 0.00 0.00 0.00 2.90
8 9 4.949238 ACATTTATACACAAGCATGGCAGA 59.051 37.500 0.00 0.00 0.00 4.26
9 10 5.252969 ACATTTATACACAAGCATGGCAG 57.747 39.130 0.00 0.00 0.00 4.85
10 11 5.657826 AACATTTATACACAAGCATGGCA 57.342 34.783 0.00 0.00 0.00 4.92
11 12 7.424803 TGATAACATTTATACACAAGCATGGC 58.575 34.615 0.00 0.00 0.00 4.40
12 13 9.800433 TTTGATAACATTTATACACAAGCATGG 57.200 29.630 0.00 0.00 0.00 3.66
26 27 9.487790 ACGAATTTGGTCATTTTGATAACATTT 57.512 25.926 0.00 0.00 0.00 2.32
27 28 9.487790 AACGAATTTGGTCATTTTGATAACATT 57.512 25.926 0.00 0.00 0.00 2.71
28 29 9.487790 AAACGAATTTGGTCATTTTGATAACAT 57.512 25.926 0.00 0.00 0.00 2.71
29 30 8.879342 AAACGAATTTGGTCATTTTGATAACA 57.121 26.923 0.00 0.00 0.00 2.41
34 35 8.279103 GCAATAAAACGAATTTGGTCATTTTGA 58.721 29.630 0.00 0.00 32.27 2.69
35 36 7.265915 CGCAATAAAACGAATTTGGTCATTTTG 59.734 33.333 0.00 0.00 32.27 2.44
36 37 7.042389 ACGCAATAAAACGAATTTGGTCATTTT 60.042 29.630 0.00 0.00 32.27 1.82
37 38 6.422400 ACGCAATAAAACGAATTTGGTCATTT 59.578 30.769 0.00 0.00 32.27 2.32
38 39 5.923684 ACGCAATAAAACGAATTTGGTCATT 59.076 32.000 0.00 0.00 32.27 2.57
39 40 5.465935 ACGCAATAAAACGAATTTGGTCAT 58.534 33.333 0.00 0.00 32.27 3.06
40 41 4.861210 ACGCAATAAAACGAATTTGGTCA 58.139 34.783 0.00 0.00 32.27 4.02
41 42 5.151389 AGACGCAATAAAACGAATTTGGTC 58.849 37.500 0.00 0.00 32.27 4.02
42 43 5.116069 AGACGCAATAAAACGAATTTGGT 57.884 34.783 0.00 0.00 32.27 3.67
43 44 5.059221 GTGAGACGCAATAAAACGAATTTGG 59.941 40.000 0.00 0.00 32.27 3.28
44 45 5.059221 GGTGAGACGCAATAAAACGAATTTG 59.941 40.000 0.00 0.00 32.27 2.32
45 46 5.151389 GGTGAGACGCAATAAAACGAATTT 58.849 37.500 0.00 0.00 34.92 1.82
46 47 4.214545 TGGTGAGACGCAATAAAACGAATT 59.785 37.500 0.00 0.00 0.00 2.17
47 48 3.749088 TGGTGAGACGCAATAAAACGAAT 59.251 39.130 0.00 0.00 0.00 3.34
48 49 3.132160 TGGTGAGACGCAATAAAACGAA 58.868 40.909 0.00 0.00 0.00 3.85
49 50 2.756829 TGGTGAGACGCAATAAAACGA 58.243 42.857 0.00 0.00 0.00 3.85
50 51 3.529634 TTGGTGAGACGCAATAAAACG 57.470 42.857 0.00 0.00 0.00 3.60
51 52 4.439776 GTGTTTGGTGAGACGCAATAAAAC 59.560 41.667 5.99 5.99 0.00 2.43
52 53 4.336993 AGTGTTTGGTGAGACGCAATAAAA 59.663 37.500 0.00 0.00 0.00 1.52
53 54 3.880490 AGTGTTTGGTGAGACGCAATAAA 59.120 39.130 0.00 0.00 0.00 1.40
54 55 3.472652 AGTGTTTGGTGAGACGCAATAA 58.527 40.909 0.00 0.00 0.00 1.40
55 56 3.064207 GAGTGTTTGGTGAGACGCAATA 58.936 45.455 0.00 0.00 0.00 1.90
56 57 1.873591 GAGTGTTTGGTGAGACGCAAT 59.126 47.619 0.00 0.00 0.00 3.56
57 58 1.295792 GAGTGTTTGGTGAGACGCAA 58.704 50.000 0.00 0.00 0.00 4.85
58 59 0.176910 TGAGTGTTTGGTGAGACGCA 59.823 50.000 0.00 0.00 0.00 5.24
59 60 1.295792 TTGAGTGTTTGGTGAGACGC 58.704 50.000 0.00 0.00 0.00 5.19
60 61 3.312421 ACATTTGAGTGTTTGGTGAGACG 59.688 43.478 0.00 0.00 0.00 4.18
61 62 4.900635 ACATTTGAGTGTTTGGTGAGAC 57.099 40.909 0.00 0.00 0.00 3.36
62 63 5.298276 GGTTACATTTGAGTGTTTGGTGAGA 59.702 40.000 0.00 0.00 33.62 3.27
63 64 5.067153 TGGTTACATTTGAGTGTTTGGTGAG 59.933 40.000 0.00 0.00 33.62 3.51
64 65 4.950475 TGGTTACATTTGAGTGTTTGGTGA 59.050 37.500 0.00 0.00 33.62 4.02
65 66 5.255710 TGGTTACATTTGAGTGTTTGGTG 57.744 39.130 0.00 0.00 33.62 4.17
66 67 6.462347 GGAATGGTTACATTTGAGTGTTTGGT 60.462 38.462 0.00 0.00 46.89 3.67
67 68 5.925969 GGAATGGTTACATTTGAGTGTTTGG 59.074 40.000 0.00 0.00 46.89 3.28
68 69 6.511416 TGGAATGGTTACATTTGAGTGTTTG 58.489 36.000 0.00 0.00 46.89 2.93
69 70 6.723298 TGGAATGGTTACATTTGAGTGTTT 57.277 33.333 0.00 0.00 46.89 2.83
70 71 6.916360 ATGGAATGGTTACATTTGAGTGTT 57.084 33.333 0.00 0.00 46.89 3.32
71 72 6.071391 GGAATGGAATGGTTACATTTGAGTGT 60.071 38.462 1.97 0.00 46.89 3.55
72 73 6.071447 TGGAATGGAATGGTTACATTTGAGTG 60.071 38.462 1.97 0.00 46.89 3.51
73 74 6.015918 TGGAATGGAATGGTTACATTTGAGT 58.984 36.000 1.97 0.00 46.89 3.41
74 75 6.528537 TGGAATGGAATGGTTACATTTGAG 57.471 37.500 1.97 0.00 46.89 3.02
75 76 6.896860 AGATGGAATGGAATGGTTACATTTGA 59.103 34.615 1.97 0.00 46.89 2.69
76 77 7.116075 AGATGGAATGGAATGGTTACATTTG 57.884 36.000 1.97 0.00 46.89 2.32
77 78 9.438163 AATAGATGGAATGGAATGGTTACATTT 57.562 29.630 1.97 0.00 46.89 2.32
79 80 7.039504 GCAATAGATGGAATGGAATGGTTACAT 60.040 37.037 0.00 0.00 39.54 2.29
80 81 6.265196 GCAATAGATGGAATGGAATGGTTACA 59.735 38.462 0.00 0.00 0.00 2.41
81 82 6.294731 GGCAATAGATGGAATGGAATGGTTAC 60.295 42.308 0.00 0.00 0.00 2.50
82 83 5.774690 GGCAATAGATGGAATGGAATGGTTA 59.225 40.000 0.00 0.00 0.00 2.85
83 84 4.590222 GGCAATAGATGGAATGGAATGGTT 59.410 41.667 0.00 0.00 0.00 3.67
84 85 4.140853 AGGCAATAGATGGAATGGAATGGT 60.141 41.667 0.00 0.00 0.00 3.55
85 86 4.413760 AGGCAATAGATGGAATGGAATGG 58.586 43.478 0.00 0.00 0.00 3.16
86 87 5.074804 TGAGGCAATAGATGGAATGGAATG 58.925 41.667 0.00 0.00 0.00 2.67
87 88 5.329191 TGAGGCAATAGATGGAATGGAAT 57.671 39.130 0.00 0.00 0.00 3.01
88 89 4.794311 TGAGGCAATAGATGGAATGGAA 57.206 40.909 0.00 0.00 0.00 3.53
89 90 4.464008 GTTGAGGCAATAGATGGAATGGA 58.536 43.478 0.00 0.00 0.00 3.41
90 91 3.571401 GGTTGAGGCAATAGATGGAATGG 59.429 47.826 0.00 0.00 0.00 3.16
91 92 4.209538 TGGTTGAGGCAATAGATGGAATG 58.790 43.478 0.00 0.00 0.00 2.67
92 93 4.524802 TGGTTGAGGCAATAGATGGAAT 57.475 40.909 0.00 0.00 0.00 3.01
93 94 4.314522 TTGGTTGAGGCAATAGATGGAA 57.685 40.909 0.00 0.00 0.00 3.53
94 95 4.016444 GTTTGGTTGAGGCAATAGATGGA 58.984 43.478 0.00 0.00 0.00 3.41
95 96 3.763360 TGTTTGGTTGAGGCAATAGATGG 59.237 43.478 0.00 0.00 0.00 3.51
96 97 5.587388 ATGTTTGGTTGAGGCAATAGATG 57.413 39.130 0.00 0.00 0.00 2.90
97 98 7.118723 TCTTATGTTTGGTTGAGGCAATAGAT 58.881 34.615 0.00 0.00 0.00 1.98
98 99 6.480763 TCTTATGTTTGGTTGAGGCAATAGA 58.519 36.000 0.00 0.00 0.00 1.98
99 100 6.757897 TCTTATGTTTGGTTGAGGCAATAG 57.242 37.500 0.00 0.00 0.00 1.73
100 101 6.348950 CGTTCTTATGTTTGGTTGAGGCAATA 60.349 38.462 0.00 0.00 0.00 1.90
101 102 5.564651 CGTTCTTATGTTTGGTTGAGGCAAT 60.565 40.000 0.00 0.00 0.00 3.56
102 103 4.261405 CGTTCTTATGTTTGGTTGAGGCAA 60.261 41.667 0.00 0.00 0.00 4.52
103 104 3.252215 CGTTCTTATGTTTGGTTGAGGCA 59.748 43.478 0.00 0.00 0.00 4.75
104 105 3.365969 CCGTTCTTATGTTTGGTTGAGGC 60.366 47.826 0.00 0.00 0.00 4.70
105 106 4.069304 TCCGTTCTTATGTTTGGTTGAGG 58.931 43.478 0.00 0.00 0.00 3.86
106 107 5.449304 GTTCCGTTCTTATGTTTGGTTGAG 58.551 41.667 0.00 0.00 0.00 3.02
107 108 4.276431 GGTTCCGTTCTTATGTTTGGTTGA 59.724 41.667 0.00 0.00 0.00 3.18
108 109 4.542735 GGTTCCGTTCTTATGTTTGGTTG 58.457 43.478 0.00 0.00 0.00 3.77
109 110 3.251487 CGGTTCCGTTCTTATGTTTGGTT 59.749 43.478 2.82 0.00 0.00 3.67
110 111 2.809696 CGGTTCCGTTCTTATGTTTGGT 59.190 45.455 2.82 0.00 0.00 3.67
111 112 3.068560 TCGGTTCCGTTCTTATGTTTGG 58.931 45.455 11.04 0.00 0.00 3.28
112 113 3.120442 GGTCGGTTCCGTTCTTATGTTTG 60.120 47.826 11.04 0.00 0.00 2.93
113 114 3.069289 GGTCGGTTCCGTTCTTATGTTT 58.931 45.455 11.04 0.00 0.00 2.83
114 115 2.613725 GGGTCGGTTCCGTTCTTATGTT 60.614 50.000 11.04 0.00 0.00 2.71
115 116 1.066645 GGGTCGGTTCCGTTCTTATGT 60.067 52.381 11.04 0.00 0.00 2.29
116 117 1.066716 TGGGTCGGTTCCGTTCTTATG 60.067 52.381 11.04 0.00 0.00 1.90
117 118 1.269012 TGGGTCGGTTCCGTTCTTAT 58.731 50.000 11.04 0.00 0.00 1.73
118 119 1.269012 ATGGGTCGGTTCCGTTCTTA 58.731 50.000 11.04 0.00 0.00 2.10
119 120 0.399075 AATGGGTCGGTTCCGTTCTT 59.601 50.000 11.04 0.00 0.00 2.52
120 121 0.036671 GAATGGGTCGGTTCCGTTCT 60.037 55.000 11.04 0.00 43.43 3.01
121 122 0.036671 AGAATGGGTCGGTTCCGTTC 60.037 55.000 11.04 13.13 45.77 3.95
122 123 1.206371 CTAGAATGGGTCGGTTCCGTT 59.794 52.381 11.04 0.00 36.31 4.44
123 124 0.822164 CTAGAATGGGTCGGTTCCGT 59.178 55.000 11.04 0.00 0.00 4.69
124 125 0.822164 ACTAGAATGGGTCGGTTCCG 59.178 55.000 4.74 4.74 0.00 4.30
125 126 1.134491 CCACTAGAATGGGTCGGTTCC 60.134 57.143 0.00 0.00 35.95 3.62
126 127 1.829222 TCCACTAGAATGGGTCGGTTC 59.171 52.381 0.00 0.00 40.49 3.62
127 128 1.946984 TCCACTAGAATGGGTCGGTT 58.053 50.000 0.00 0.00 40.49 4.44
128 129 1.946984 TTCCACTAGAATGGGTCGGT 58.053 50.000 0.00 0.00 40.49 4.69
129 130 3.895656 TCTATTCCACTAGAATGGGTCGG 59.104 47.826 0.00 0.00 45.11 4.79
130 131 5.531122 TTCTATTCCACTAGAATGGGTCG 57.469 43.478 0.00 0.00 45.11 4.79
136 137 8.267620 TCCATGACATTCTATTCCACTAGAAT 57.732 34.615 0.00 1.46 45.16 2.40
137 138 7.675161 TCCATGACATTCTATTCCACTAGAA 57.325 36.000 0.00 0.00 40.88 2.10
138 139 7.419057 GGTTCCATGACATTCTATTCCACTAGA 60.419 40.741 0.00 0.00 0.00 2.43
139 140 6.708054 GGTTCCATGACATTCTATTCCACTAG 59.292 42.308 0.00 0.00 0.00 2.57
140 141 6.157820 TGGTTCCATGACATTCTATTCCACTA 59.842 38.462 0.00 0.00 0.00 2.74
141 142 5.044919 TGGTTCCATGACATTCTATTCCACT 60.045 40.000 0.00 0.00 0.00 4.00
142 143 5.192927 TGGTTCCATGACATTCTATTCCAC 58.807 41.667 0.00 0.00 0.00 4.02
143 144 5.449297 TGGTTCCATGACATTCTATTCCA 57.551 39.130 0.00 0.00 0.00 3.53
144 145 6.064060 TCATGGTTCCATGACATTCTATTCC 58.936 40.000 25.03 0.00 45.19 3.01
155 156 5.127519 GGAATGAAATGTCATGGTTCCATGA 59.872 40.000 25.03 25.03 44.02 3.07
156 157 5.105269 TGGAATGAAATGTCATGGTTCCATG 60.105 40.000 21.71 21.71 44.02 3.66
157 158 5.024785 TGGAATGAAATGTCATGGTTCCAT 58.975 37.500 13.35 0.00 44.02 3.41
158 159 4.414677 TGGAATGAAATGTCATGGTTCCA 58.585 39.130 13.35 13.35 44.02 3.53
159 160 5.603170 ATGGAATGAAATGTCATGGTTCC 57.397 39.130 9.11 9.11 44.02 3.62
160 161 6.254157 CGAAATGGAATGAAATGTCATGGTTC 59.746 38.462 0.00 0.00 44.02 3.62
161 162 6.101332 CGAAATGGAATGAAATGTCATGGTT 58.899 36.000 0.00 0.00 44.02 3.67
162 163 5.185635 ACGAAATGGAATGAAATGTCATGGT 59.814 36.000 0.00 0.00 44.02 3.55
163 164 5.653507 ACGAAATGGAATGAAATGTCATGG 58.346 37.500 0.00 0.00 44.02 3.66
164 165 7.328982 TGAAACGAAATGGAATGAAATGTCATG 59.671 33.333 0.00 0.00 44.02 3.07
165 166 7.329226 GTGAAACGAAATGGAATGAAATGTCAT 59.671 33.333 0.00 0.00 46.91 3.06
166 167 6.640499 GTGAAACGAAATGGAATGAAATGTCA 59.360 34.615 0.00 0.00 38.41 3.58
167 168 7.037797 GTGAAACGAAATGGAATGAAATGTC 57.962 36.000 0.00 0.00 0.00 3.06
185 186 4.795970 AGAGTGTGTTTGATCGTGAAAC 57.204 40.909 1.23 1.23 34.48 2.78
186 187 6.912203 TTTAGAGTGTGTTTGATCGTGAAA 57.088 33.333 0.00 0.00 0.00 2.69
187 188 7.870954 ACTATTTAGAGTGTGTTTGATCGTGAA 59.129 33.333 0.00 0.00 0.00 3.18
188 189 7.375834 ACTATTTAGAGTGTGTTTGATCGTGA 58.624 34.615 0.00 0.00 0.00 4.35
189 190 7.582435 ACTATTTAGAGTGTGTTTGATCGTG 57.418 36.000 0.00 0.00 0.00 4.35
190 191 8.603242 AAACTATTTAGAGTGTGTTTGATCGT 57.397 30.769 0.00 0.00 0.00 3.73
191 192 9.530129 GAAAACTATTTAGAGTGTGTTTGATCG 57.470 33.333 0.00 0.00 0.00 3.69
211 212 9.856162 TTTTGTACTACCTTCCTATTGAAAACT 57.144 29.630 0.00 0.00 31.06 2.66
220 221 9.322769 AGAGATTCTTTTTGTACTACCTTCCTA 57.677 33.333 0.00 0.00 0.00 2.94
221 222 8.208575 AGAGATTCTTTTTGTACTACCTTCCT 57.791 34.615 0.00 0.00 0.00 3.36
225 226 9.495382 AGGATAGAGATTCTTTTTGTACTACCT 57.505 33.333 0.00 0.00 0.00 3.08
232 233 8.465201 GCAATCAAGGATAGAGATTCTTTTTGT 58.535 33.333 0.00 0.00 30.40 2.83
233 234 8.464404 TGCAATCAAGGATAGAGATTCTTTTTG 58.536 33.333 0.00 0.00 27.11 2.44
234 235 8.585471 TGCAATCAAGGATAGAGATTCTTTTT 57.415 30.769 0.00 0.00 27.11 1.94
235 236 8.630917 CATGCAATCAAGGATAGAGATTCTTTT 58.369 33.333 0.00 0.00 27.11 2.27
236 237 7.255520 GCATGCAATCAAGGATAGAGATTCTTT 60.256 37.037 14.21 0.00 27.11 2.52
237 238 6.207025 GCATGCAATCAAGGATAGAGATTCTT 59.793 38.462 14.21 0.00 30.12 2.52
238 239 5.706369 GCATGCAATCAAGGATAGAGATTCT 59.294 40.000 14.21 0.00 30.04 2.40
239 240 5.472478 TGCATGCAATCAAGGATAGAGATTC 59.528 40.000 20.30 0.00 30.04 2.52
240 241 5.241064 GTGCATGCAATCAAGGATAGAGATT 59.759 40.000 24.58 0.00 32.53 2.40
241 242 4.760715 GTGCATGCAATCAAGGATAGAGAT 59.239 41.667 24.58 0.00 0.00 2.75
242 243 4.132336 GTGCATGCAATCAAGGATAGAGA 58.868 43.478 24.58 0.00 0.00 3.10
243 244 4.135306 AGTGCATGCAATCAAGGATAGAG 58.865 43.478 24.58 0.00 0.00 2.43
244 245 4.132336 GAGTGCATGCAATCAAGGATAGA 58.868 43.478 35.86 2.21 40.31 1.98
245 246 3.881089 TGAGTGCATGCAATCAAGGATAG 59.119 43.478 39.69 0.00 45.99 2.08
246 247 3.888583 TGAGTGCATGCAATCAAGGATA 58.111 40.909 39.69 21.29 45.99 2.59
247 248 2.730382 TGAGTGCATGCAATCAAGGAT 58.270 42.857 39.69 12.82 45.99 3.24
248 249 2.203470 TGAGTGCATGCAATCAAGGA 57.797 45.000 39.69 22.32 45.99 3.36
252 253 3.508402 AGAAATGTGAGTGCATGCAATCA 59.492 39.130 38.64 38.64 46.64 2.57
253 254 4.103357 GAGAAATGTGAGTGCATGCAATC 58.897 43.478 34.72 34.72 40.89 2.67
254 255 3.119245 GGAGAAATGTGAGTGCATGCAAT 60.119 43.478 24.58 23.44 0.00 3.56
255 256 2.229543 GGAGAAATGTGAGTGCATGCAA 59.770 45.455 24.58 6.73 0.00 4.08
256 257 1.814394 GGAGAAATGTGAGTGCATGCA 59.186 47.619 18.46 18.46 0.00 3.96
257 258 2.089980 AGGAGAAATGTGAGTGCATGC 58.910 47.619 11.82 11.82 0.00 4.06
258 259 4.008330 AGAAGGAGAAATGTGAGTGCATG 58.992 43.478 0.00 0.00 0.00 4.06
259 260 4.260170 GAGAAGGAGAAATGTGAGTGCAT 58.740 43.478 0.00 0.00 0.00 3.96
260 261 3.557898 GGAGAAGGAGAAATGTGAGTGCA 60.558 47.826 0.00 0.00 0.00 4.57
261 262 3.006247 GGAGAAGGAGAAATGTGAGTGC 58.994 50.000 0.00 0.00 0.00 4.40
262 263 4.277515 TGGAGAAGGAGAAATGTGAGTG 57.722 45.455 0.00 0.00 0.00 3.51
263 264 4.982241 TTGGAGAAGGAGAAATGTGAGT 57.018 40.909 0.00 0.00 0.00 3.41
264 265 4.880696 GGATTGGAGAAGGAGAAATGTGAG 59.119 45.833 0.00 0.00 0.00 3.51
265 266 4.324563 GGGATTGGAGAAGGAGAAATGTGA 60.325 45.833 0.00 0.00 0.00 3.58
266 267 3.950395 GGGATTGGAGAAGGAGAAATGTG 59.050 47.826 0.00 0.00 0.00 3.21
267 268 3.593328 TGGGATTGGAGAAGGAGAAATGT 59.407 43.478 0.00 0.00 0.00 2.71
268 269 4.240881 TGGGATTGGAGAAGGAGAAATG 57.759 45.455 0.00 0.00 0.00 2.32
269 270 4.445448 CGATGGGATTGGAGAAGGAGAAAT 60.445 45.833 0.00 0.00 0.00 2.17
270 271 3.118261 CGATGGGATTGGAGAAGGAGAAA 60.118 47.826 0.00 0.00 0.00 2.52
271 272 2.435805 CGATGGGATTGGAGAAGGAGAA 59.564 50.000 0.00 0.00 0.00 2.87
272 273 2.042464 CGATGGGATTGGAGAAGGAGA 58.958 52.381 0.00 0.00 0.00 3.71
273 274 1.765314 ACGATGGGATTGGAGAAGGAG 59.235 52.381 0.00 0.00 0.00 3.69
274 275 1.879575 ACGATGGGATTGGAGAAGGA 58.120 50.000 0.00 0.00 0.00 3.36
275 276 2.684881 CAAACGATGGGATTGGAGAAGG 59.315 50.000 0.00 0.00 0.00 3.46
276 277 3.609853 TCAAACGATGGGATTGGAGAAG 58.390 45.455 0.00 0.00 0.00 2.85
277 278 3.712016 TCAAACGATGGGATTGGAGAA 57.288 42.857 0.00 0.00 0.00 2.87
278 279 3.931907 ATCAAACGATGGGATTGGAGA 57.068 42.857 0.00 0.00 0.00 3.71
279 280 4.989279 AAATCAAACGATGGGATTGGAG 57.011 40.909 0.00 0.00 31.98 3.86
280 281 7.341769 AGAATAAAATCAAACGATGGGATTGGA 59.658 33.333 0.00 0.00 31.98 3.53
281 282 7.436080 CAGAATAAAATCAAACGATGGGATTGG 59.564 37.037 0.00 0.00 31.98 3.16
282 283 7.436080 CCAGAATAAAATCAAACGATGGGATTG 59.564 37.037 0.00 0.00 31.98 2.67
283 284 7.124147 ACCAGAATAAAATCAAACGATGGGATT 59.876 33.333 0.00 0.00 32.90 3.01
284 285 6.607198 ACCAGAATAAAATCAAACGATGGGAT 59.393 34.615 0.00 0.00 0.00 3.85
285 286 5.949354 ACCAGAATAAAATCAAACGATGGGA 59.051 36.000 0.00 0.00 0.00 4.37
286 287 6.035843 CACCAGAATAAAATCAAACGATGGG 58.964 40.000 0.00 0.00 0.00 4.00
287 288 5.516339 GCACCAGAATAAAATCAAACGATGG 59.484 40.000 0.00 0.00 0.00 3.51
288 289 6.092092 TGCACCAGAATAAAATCAAACGATG 58.908 36.000 0.00 0.00 0.00 3.84
289 290 6.266168 TGCACCAGAATAAAATCAAACGAT 57.734 33.333 0.00 0.00 0.00 3.73
290 291 5.697473 TGCACCAGAATAAAATCAAACGA 57.303 34.783 0.00 0.00 0.00 3.85
291 292 6.949578 ATTGCACCAGAATAAAATCAAACG 57.050 33.333 0.00 0.00 0.00 3.60
292 293 9.638239 TCTTATTGCACCAGAATAAAATCAAAC 57.362 29.630 0.00 0.00 0.00 2.93
301 302 9.461312 ACAACTAAATCTTATTGCACCAGAATA 57.539 29.630 0.00 0.00 0.00 1.75
302 303 8.353423 ACAACTAAATCTTATTGCACCAGAAT 57.647 30.769 0.00 0.00 0.00 2.40
303 304 7.759489 ACAACTAAATCTTATTGCACCAGAA 57.241 32.000 0.00 0.00 0.00 3.02
304 305 7.759489 AACAACTAAATCTTATTGCACCAGA 57.241 32.000 0.00 0.00 0.00 3.86
305 306 8.816640 AAAACAACTAAATCTTATTGCACCAG 57.183 30.769 0.00 0.00 0.00 4.00
334 335 7.973388 GCAGCAACTAAATAATCAATGGTGTAA 59.027 33.333 0.00 0.00 37.20 2.41
335 336 7.339212 AGCAGCAACTAAATAATCAATGGTGTA 59.661 33.333 0.00 0.00 37.20 2.90
336 337 6.153340 AGCAGCAACTAAATAATCAATGGTGT 59.847 34.615 0.00 0.00 37.20 4.16
337 338 6.567050 AGCAGCAACTAAATAATCAATGGTG 58.433 36.000 0.00 0.00 37.73 4.17
338 339 6.780457 AGCAGCAACTAAATAATCAATGGT 57.220 33.333 0.00 0.00 0.00 3.55
339 340 8.408601 AGTTAGCAGCAACTAAATAATCAATGG 58.591 33.333 8.07 0.00 36.99 3.16
342 343 8.889717 GGTAGTTAGCAGCAACTAAATAATCAA 58.110 33.333 15.03 0.00 41.44 2.57
343 344 8.265055 AGGTAGTTAGCAGCAACTAAATAATCA 58.735 33.333 15.03 0.00 41.44 2.57
344 345 8.664211 AGGTAGTTAGCAGCAACTAAATAATC 57.336 34.615 15.03 5.98 41.44 1.75
348 349 9.110502 GAATTAGGTAGTTAGCAGCAACTAAAT 57.889 33.333 15.03 10.64 41.44 1.40
349 350 8.319146 AGAATTAGGTAGTTAGCAGCAACTAAA 58.681 33.333 15.03 9.35 41.44 1.85
350 351 7.848128 AGAATTAGGTAGTTAGCAGCAACTAA 58.152 34.615 15.03 4.79 41.44 2.24
351 352 7.419711 AGAATTAGGTAGTTAGCAGCAACTA 57.580 36.000 11.30 11.30 39.45 2.24
352 353 6.301169 AGAATTAGGTAGTTAGCAGCAACT 57.699 37.500 12.85 12.85 41.56 3.16
353 354 6.594159 TGAAGAATTAGGTAGTTAGCAGCAAC 59.406 38.462 0.00 0.00 0.00 4.17
354 355 6.707290 TGAAGAATTAGGTAGTTAGCAGCAA 58.293 36.000 0.00 0.00 0.00 3.91
355 356 6.294361 TGAAGAATTAGGTAGTTAGCAGCA 57.706 37.500 0.00 0.00 0.00 4.41
356 357 6.258947 CCTTGAAGAATTAGGTAGTTAGCAGC 59.741 42.308 0.00 0.00 0.00 5.25
357 358 6.763610 CCCTTGAAGAATTAGGTAGTTAGCAG 59.236 42.308 0.00 0.00 0.00 4.24
358 359 6.650120 CCCTTGAAGAATTAGGTAGTTAGCA 58.350 40.000 0.00 0.00 0.00 3.49
359 360 5.527951 GCCCTTGAAGAATTAGGTAGTTAGC 59.472 44.000 0.00 0.00 0.00 3.09
360 361 6.650120 TGCCCTTGAAGAATTAGGTAGTTAG 58.350 40.000 0.00 0.00 0.00 2.34
361 362 6.630203 TGCCCTTGAAGAATTAGGTAGTTA 57.370 37.500 0.00 0.00 0.00 2.24
362 363 5.514500 TGCCCTTGAAGAATTAGGTAGTT 57.486 39.130 0.00 0.00 0.00 2.24
363 364 5.717119 ATGCCCTTGAAGAATTAGGTAGT 57.283 39.130 0.00 0.00 0.00 2.73
364 365 7.410120 AAAATGCCCTTGAAGAATTAGGTAG 57.590 36.000 0.00 0.00 0.00 3.18
365 366 6.094881 CGAAAATGCCCTTGAAGAATTAGGTA 59.905 38.462 0.00 0.00 0.00 3.08
366 367 5.105756 CGAAAATGCCCTTGAAGAATTAGGT 60.106 40.000 0.00 0.00 0.00 3.08
367 368 5.105756 ACGAAAATGCCCTTGAAGAATTAGG 60.106 40.000 0.00 0.00 0.00 2.69
368 369 5.954335 ACGAAAATGCCCTTGAAGAATTAG 58.046 37.500 0.00 0.00 0.00 1.73
369 370 5.105917 GGACGAAAATGCCCTTGAAGAATTA 60.106 40.000 0.00 0.00 0.00 1.40
370 371 4.321974 GGACGAAAATGCCCTTGAAGAATT 60.322 41.667 0.00 0.00 0.00 2.17
371 372 3.193479 GGACGAAAATGCCCTTGAAGAAT 59.807 43.478 0.00 0.00 0.00 2.40
372 373 2.556622 GGACGAAAATGCCCTTGAAGAA 59.443 45.455 0.00 0.00 0.00 2.52
373 374 2.159382 GGACGAAAATGCCCTTGAAGA 58.841 47.619 0.00 0.00 0.00 2.87
374 375 1.885887 TGGACGAAAATGCCCTTGAAG 59.114 47.619 0.00 0.00 0.00 3.02
375 376 1.988293 TGGACGAAAATGCCCTTGAA 58.012 45.000 0.00 0.00 0.00 2.69
376 377 1.988293 TTGGACGAAAATGCCCTTGA 58.012 45.000 0.00 0.00 0.00 3.02
377 378 2.810439 TTTGGACGAAAATGCCCTTG 57.190 45.000 0.00 0.00 0.00 3.61
378 379 3.306710 GGATTTTGGACGAAAATGCCCTT 60.307 43.478 12.26 0.00 43.23 3.95
379 380 2.233676 GGATTTTGGACGAAAATGCCCT 59.766 45.455 12.26 0.00 43.23 5.19
380 381 2.616960 GGATTTTGGACGAAAATGCCC 58.383 47.619 12.26 5.51 43.23 5.36
383 384 5.391312 AAGGAGGATTTTGGACGAAAATG 57.609 39.130 12.26 0.00 43.12 2.32
384 385 7.718334 ATTAAGGAGGATTTTGGACGAAAAT 57.282 32.000 7.77 7.77 45.29 1.82
385 386 7.450323 AGAATTAAGGAGGATTTTGGACGAAAA 59.550 33.333 0.00 0.00 37.93 2.29
386 387 6.946009 AGAATTAAGGAGGATTTTGGACGAAA 59.054 34.615 0.00 0.00 0.00 3.46
387 388 6.374333 CAGAATTAAGGAGGATTTTGGACGAA 59.626 38.462 0.00 0.00 0.00 3.85
388 389 5.880332 CAGAATTAAGGAGGATTTTGGACGA 59.120 40.000 0.00 0.00 0.00 4.20
389 390 5.648092 ACAGAATTAAGGAGGATTTTGGACG 59.352 40.000 0.00 0.00 0.00 4.79
390 391 6.625960 GCACAGAATTAAGGAGGATTTTGGAC 60.626 42.308 0.00 0.00 0.00 4.02
391 392 5.418840 GCACAGAATTAAGGAGGATTTTGGA 59.581 40.000 0.00 0.00 0.00 3.53
392 393 5.394553 GGCACAGAATTAAGGAGGATTTTGG 60.395 44.000 0.00 0.00 0.00 3.28
393 394 5.420104 AGGCACAGAATTAAGGAGGATTTTG 59.580 40.000 0.00 0.00 0.00 2.44
394 395 5.583932 AGGCACAGAATTAAGGAGGATTTT 58.416 37.500 0.00 0.00 0.00 1.82
395 396 5.198602 AGGCACAGAATTAAGGAGGATTT 57.801 39.130 0.00 0.00 0.00 2.17
396 397 4.870021 AGGCACAGAATTAAGGAGGATT 57.130 40.909 0.00 0.00 0.00 3.01
397 398 4.530875 CAAGGCACAGAATTAAGGAGGAT 58.469 43.478 0.00 0.00 0.00 3.24
398 399 3.308402 CCAAGGCACAGAATTAAGGAGGA 60.308 47.826 0.00 0.00 0.00 3.71
399 400 3.019564 CCAAGGCACAGAATTAAGGAGG 58.980 50.000 0.00 0.00 0.00 4.30
400 401 3.690460 ACCAAGGCACAGAATTAAGGAG 58.310 45.455 0.00 0.00 0.00 3.69
401 402 3.073798 TGACCAAGGCACAGAATTAAGGA 59.926 43.478 0.00 0.00 0.00 3.36
402 403 3.191371 GTGACCAAGGCACAGAATTAAGG 59.809 47.826 0.00 0.00 36.31 2.69
403 404 3.191371 GGTGACCAAGGCACAGAATTAAG 59.809 47.826 2.52 0.00 37.99 1.85
404 405 3.153919 GGTGACCAAGGCACAGAATTAA 58.846 45.455 2.52 0.00 37.99 1.40
405 406 2.107378 TGGTGACCAAGGCACAGAATTA 59.893 45.455 0.00 0.00 37.99 1.40
406 407 1.133513 TGGTGACCAAGGCACAGAATT 60.134 47.619 0.00 0.00 37.99 2.17
407 408 0.478072 TGGTGACCAAGGCACAGAAT 59.522 50.000 0.00 0.00 37.99 2.40
408 409 0.465460 GTGGTGACCAAGGCACAGAA 60.465 55.000 5.57 0.00 37.99 3.02
409 410 1.148273 GTGGTGACCAAGGCACAGA 59.852 57.895 5.57 0.00 37.99 3.41
410 411 2.253758 CGTGGTGACCAAGGCACAG 61.254 63.158 5.57 0.00 37.99 3.66
411 412 2.203139 CGTGGTGACCAAGGCACA 60.203 61.111 5.57 0.54 37.99 4.57
412 413 3.660111 GCGTGGTGACCAAGGCAC 61.660 66.667 18.85 0.00 35.94 5.01
420 421 3.527641 TTTTTGGGGCGTGGTGAC 58.472 55.556 0.00 0.00 0.00 3.67
504 505 8.358148 TGAAAGAGGTCTAACCGATATCATAAC 58.642 37.037 3.12 0.00 44.90 1.89
506 507 8.651589 ATGAAAGAGGTCTAACCGATATCATA 57.348 34.615 3.12 0.00 44.90 2.15
508 509 6.978674 ATGAAAGAGGTCTAACCGATATCA 57.021 37.500 3.12 0.00 44.90 2.15
509 510 8.578151 AGTTATGAAAGAGGTCTAACCGATATC 58.422 37.037 0.00 0.00 44.90 1.63
510 511 8.480133 AGTTATGAAAGAGGTCTAACCGATAT 57.520 34.615 0.00 0.00 44.90 1.63
511 512 7.893124 AGTTATGAAAGAGGTCTAACCGATA 57.107 36.000 0.00 0.00 44.90 2.92
512 513 6.793505 AGTTATGAAAGAGGTCTAACCGAT 57.206 37.500 0.00 0.00 44.90 4.18
513 514 7.707624 TTAGTTATGAAAGAGGTCTAACCGA 57.292 36.000 0.00 0.00 44.90 4.69
689 735 6.146347 GCGTACAGAGAGAACAGAATCTTTTT 59.854 38.462 0.00 0.00 0.00 1.94
694 740 3.102276 CGCGTACAGAGAGAACAGAATC 58.898 50.000 0.00 0.00 0.00 2.52
698 744 1.607713 CACGCGTACAGAGAGAACAG 58.392 55.000 13.44 0.00 0.00 3.16
699 745 0.386858 GCACGCGTACAGAGAGAACA 60.387 55.000 13.44 0.00 0.00 3.18
750 796 0.737019 GGAGACGAGACGAGACGACT 60.737 60.000 0.00 0.00 37.26 4.18
766 812 0.039074 AAGACTGAACGCAGACGGAG 60.039 55.000 0.00 0.00 45.17 4.63
774 820 1.264288 CTGGTGGAAAAGACTGAACGC 59.736 52.381 0.00 0.00 0.00 4.84
778 824 1.490490 AGTGCTGGTGGAAAAGACTGA 59.510 47.619 0.00 0.00 0.00 3.41
779 825 1.972872 AGTGCTGGTGGAAAAGACTG 58.027 50.000 0.00 0.00 0.00 3.51
786 832 1.301401 GTGCGTAGTGCTGGTGGAA 60.301 57.895 0.00 0.00 46.63 3.53
793 839 2.027625 GGAAAGCGTGCGTAGTGCT 61.028 57.895 0.00 0.00 46.63 4.40
837 885 0.843309 TGGGTGCTTTTGGAGTCTCA 59.157 50.000 1.47 0.00 0.00 3.27
855 903 1.202927 TCCTCTTGTTCCCAGCCTTTG 60.203 52.381 0.00 0.00 0.00 2.77
909 957 1.954528 CGATGGAGATGGCAATGGC 59.045 57.895 0.00 0.00 40.13 4.40
1003 1051 2.865119 TTGAGCAAAGATCTGGAGCA 57.135 45.000 14.40 0.53 0.00 4.26
1068 1116 1.204467 GAAAATGGCGCATGGAAAGGA 59.796 47.619 10.83 0.00 0.00 3.36
1114 1162 4.867086 TCAGGAACAAAGAAAAGAAGGGT 58.133 39.130 0.00 0.00 0.00 4.34
1217 1266 3.087781 AGTAACACCCTCGAGTCCTAAC 58.912 50.000 12.31 2.55 0.00 2.34
1243 1292 3.132824 ACTTCAGCCCCAAAAGTGAAAAG 59.867 43.478 0.00 0.00 32.22 2.27
1268 1317 5.656859 CCTCTTACATGGATGATATCGGGTA 59.343 44.000 0.00 0.00 0.00 3.69
1270 1319 4.711846 TCCTCTTACATGGATGATATCGGG 59.288 45.833 0.00 0.00 0.00 5.14
1274 1323 8.446714 AGATGTTCCTCTTACATGGATGATAT 57.553 34.615 0.00 0.00 36.41 1.63
1281 1330 5.604758 TCAGAGATGTTCCTCTTACATGG 57.395 43.478 0.00 0.00 41.29 3.66
1283 1332 7.615039 ATCATCAGAGATGTTCCTCTTACAT 57.385 36.000 6.86 0.00 41.29 2.29
1324 1373 1.272369 TGGCAGGCATTAACATCCACA 60.272 47.619 0.00 0.00 0.00 4.17
1325 1374 1.406539 CTGGCAGGCATTAACATCCAC 59.593 52.381 6.61 0.00 0.00 4.02
1394 1443 6.817184 ACTAAAGGCTTAGCGATCTGAATTA 58.183 36.000 0.00 0.00 38.52 1.40
1476 1525 5.476945 AGCAAAACCTTATGTAAAGGACTGG 59.523 40.000 10.67 0.00 39.81 4.00
1510 1559 2.542595 ACGCACTAGCAAAACTACACAC 59.457 45.455 0.00 0.00 42.27 3.82
1546 1595 2.972625 TCACAATGAGAATGGACCGAC 58.027 47.619 0.00 0.00 0.00 4.79
1578 1627 1.507140 TGGACCAGACCAGACAACTT 58.493 50.000 0.00 0.00 34.77 2.66
1579 1628 1.625818 GATGGACCAGACCAGACAACT 59.374 52.381 0.00 0.00 43.49 3.16
1625 1674 4.536489 ACCTAGCCACATATAAAGGGATCC 59.464 45.833 1.92 1.92 0.00 3.36
1696 1745 2.500098 TCAACTAATTCGGGACAGAGGG 59.500 50.000 0.00 0.00 0.00 4.30
1708 1757 7.227156 ACCTCACAAATCTGAGTCAACTAATT 58.773 34.615 0.00 0.00 36.66 1.40
1849 1898 3.465966 TCCCTAGTAGAGCACTCCCATAA 59.534 47.826 0.00 0.00 38.80 1.90
2007 2056 6.962182 AGGATGATTCAAGTTGGATGAACTA 58.038 36.000 0.00 0.00 44.68 2.24
2114 2163 2.171003 GGCCTGCAAGACAAAGGTAAT 58.829 47.619 0.00 0.00 34.07 1.89
2418 2467 3.283259 AGAGCCCTAACATTTACTGCC 57.717 47.619 0.00 0.00 0.00 4.85
2567 2616 1.341877 CCCTGATTTATGGTGGGCACA 60.342 52.381 0.00 0.00 0.00 4.57
2588 2637 7.713750 AGCCAATTAATCATCAAGATGTGAAG 58.286 34.615 9.66 0.00 40.50 3.02
2818 2867 0.613260 AGAACCACTATGCCGCAAGA 59.387 50.000 0.00 0.00 43.02 3.02
2819 2868 1.009829 GAGAACCACTATGCCGCAAG 58.990 55.000 0.00 0.00 0.00 4.01
2825 2874 7.986085 ATATTATGTTGGAGAACCACTATGC 57.014 36.000 0.00 0.00 46.80 3.14
2965 3014 0.977108 TGGCAAGCCATGGGGATTTC 60.977 55.000 15.13 0.00 40.72 2.17
3126 3176 3.281727 TCTGAGGGACATACCAAATGC 57.718 47.619 0.00 0.00 41.20 3.56
3179 3229 6.591448 TCAATGTACTTATCAAGTGCTGTGAG 59.409 38.462 8.30 0.00 43.47 3.51
3447 3498 5.164233 CCAGGCAGTACATTAGATATCACG 58.836 45.833 5.32 0.00 0.00 4.35
3525 3576 7.541091 GGTTTAGCCTTAAAACAAAGCATACTC 59.459 37.037 0.00 0.00 38.34 2.59
3618 3669 4.265073 ACAAGACATCAGAACAATAGCCC 58.735 43.478 0.00 0.00 0.00 5.19
3638 3689 2.686405 CCAGCCTACAGTACACGATACA 59.314 50.000 0.00 0.00 0.00 2.29
3656 3707 3.446873 AGACTGTCTAGATGACTTGCCAG 59.553 47.826 8.91 0.00 45.54 4.85
3671 3722 5.507985 CCTTTCCACAATTTTCCAGACTGTC 60.508 44.000 0.00 0.00 0.00 3.51
3683 3734 5.948742 TTCTTTCAACCCTTTCCACAATT 57.051 34.783 0.00 0.00 0.00 2.32
3684 3735 6.499106 AATTCTTTCAACCCTTTCCACAAT 57.501 33.333 0.00 0.00 0.00 2.71
3743 3794 5.631992 CCTTCGAGGCTTTTGTATCTTTTC 58.368 41.667 0.00 0.00 0.00 2.29
3770 3821 6.323203 TCTTCTGCTCTTTTGAATCCTTTG 57.677 37.500 0.00 0.00 0.00 2.77
3771 3822 6.015603 CCTTCTTCTGCTCTTTTGAATCCTTT 60.016 38.462 0.00 0.00 0.00 3.11
3798 3849 0.097150 GTTCTTCGGAGCATTTCGGC 59.903 55.000 0.00 0.00 0.00 5.54
3854 3905 4.006319 CTCTTTCCAGTCTTCCAATGACC 58.994 47.826 0.00 0.00 35.21 4.02
3908 3959 2.677836 TCATTTGAATCTTTCGCCTCCG 59.322 45.455 0.00 0.00 0.00 4.63
3914 3965 5.339611 GGTTGACGTTCATTTGAATCTTTCG 59.660 40.000 0.00 0.00 36.33 3.46
3948 3999 1.919271 CGAATGTCACACGTTTGTCG 58.081 50.000 0.98 0.00 46.00 4.35
3950 4001 0.042535 CGCGAATGTCACACGTTTGT 60.043 50.000 0.00 0.00 32.36 2.83
4054 4105 0.613260 AAGCTGCGGTTCCATGAGTA 59.387 50.000 0.00 0.00 0.00 2.59
4089 4140 7.230108 CCTATCTAGTTCCGGTAACTATGTTCA 59.770 40.741 19.94 6.01 46.85 3.18
4229 4280 1.748879 ATTCCCGTGGTTGATGCCG 60.749 57.895 0.00 0.00 0.00 5.69
4306 4357 9.694137 GACCACTGGACTAATAGAATATGTTAC 57.306 37.037 0.71 0.00 0.00 2.50
4345 4396 5.541101 ACCAACATCTACACACCTACAGTTA 59.459 40.000 0.00 0.00 0.00 2.24
4385 4436 9.788960 CTTCCAGCTAATAATAACAAGGTTTTC 57.211 33.333 0.00 0.00 0.00 2.29
4387 4438 9.178758 CTCTTCCAGCTAATAATAACAAGGTTT 57.821 33.333 0.00 0.00 0.00 3.27
4392 4443 7.778083 TCGACTCTTCCAGCTAATAATAACAA 58.222 34.615 0.00 0.00 0.00 2.83
4393 4444 7.342769 TCGACTCTTCCAGCTAATAATAACA 57.657 36.000 0.00 0.00 0.00 2.41
4394 4445 6.864165 CCTCGACTCTTCCAGCTAATAATAAC 59.136 42.308 0.00 0.00 0.00 1.89
4418 4469 6.018180 GTCCTGACAACGGATTTAATATCACC 60.018 42.308 0.00 0.00 32.25 4.02
4498 4549 1.409427 GACTACCAATCCCTCCGACAG 59.591 57.143 0.00 0.00 0.00 3.51
4499 4550 1.272816 TGACTACCAATCCCTCCGACA 60.273 52.381 0.00 0.00 0.00 4.35
4500 4551 1.136500 GTGACTACCAATCCCTCCGAC 59.864 57.143 0.00 0.00 0.00 4.79
4501 4552 1.481871 GTGACTACCAATCCCTCCGA 58.518 55.000 0.00 0.00 0.00 4.55
4502 4553 0.464452 GGTGACTACCAATCCCTCCG 59.536 60.000 0.00 0.00 46.71 4.63
4512 4563 7.494952 GTCTTGAAATACTATTGGGTGACTACC 59.505 40.741 0.00 0.00 46.76 3.18
4513 4564 8.038944 TGTCTTGAAATACTATTGGGTGACTAC 58.961 37.037 0.00 0.00 0.00 2.73
4514 4565 8.141298 TGTCTTGAAATACTATTGGGTGACTA 57.859 34.615 0.00 0.00 0.00 2.59
4515 4566 7.016153 TGTCTTGAAATACTATTGGGTGACT 57.984 36.000 0.00 0.00 0.00 3.41
4516 4567 7.254455 CGATGTCTTGAAATACTATTGGGTGAC 60.254 40.741 0.00 0.00 0.00 3.67
4523 4574 5.063880 GCCCCGATGTCTTGAAATACTATT 58.936 41.667 0.00 0.00 0.00 1.73
4572 4623 2.987547 AAGGAGTCGGCCGTTCGA 60.988 61.111 27.15 1.49 36.76 3.71
4630 4702 2.272146 GGATGCCCGCTCCTTGAA 59.728 61.111 0.00 0.00 0.00 2.69
4631 4703 3.008517 TGGATGCCCGCTCCTTGA 61.009 61.111 6.70 0.00 33.69 3.02
4661 4789 0.468400 TGCAAACTTTAAGGGGGCGT 60.468 50.000 0.00 0.00 0.00 5.68
4670 4798 7.584122 TTGTAGTAAATGGGTGCAAACTTTA 57.416 32.000 0.00 0.00 0.00 1.85
4731 4859 2.945008 GCCACATTCATTCTGGATTCGA 59.055 45.455 0.00 0.00 0.00 3.71
4741 4869 1.739466 CGCACTGTAGCCACATTCATT 59.261 47.619 0.00 0.00 33.14 2.57
4747 4876 1.079197 CATCCGCACTGTAGCCACA 60.079 57.895 0.00 0.00 0.00 4.17
4753 4882 0.821517 CCTGGTACATCCGCACTGTA 59.178 55.000 0.00 0.00 38.20 2.74
4763 4892 1.696097 GGGATGTCCGCCTGGTACAT 61.696 60.000 10.05 10.05 38.15 2.29
4878 5007 2.682494 GACAGGTAGGGTCCGCCA 60.682 66.667 6.47 0.00 36.17 5.69
4884 5013 2.352032 GCTCGCAGACAGGTAGGGT 61.352 63.158 0.00 0.00 0.00 4.34
4904 5033 1.022735 GGGATGCGTCGTCTTCTAGA 58.977 55.000 0.00 0.00 0.00 2.43
4988 5121 6.505048 TCCATCTCATCAGATTAATGGTGT 57.495 37.500 12.30 0.00 37.25 4.16
5038 5171 1.612442 ATGGCTACAGTCCCACCGT 60.612 57.895 0.00 0.00 33.17 4.83
5069 5202 1.376037 CCTTGGTGACGGAGGCTTC 60.376 63.158 0.00 0.00 30.75 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.