Multiple sequence alignment - TraesCS4A01G173800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G173800 chr4A 100.000 2894 0 0 1 2894 441945884 441942991 0.000000e+00 5345.0
1 TraesCS4A01G173800 chr4A 91.857 307 24 1 2416 2721 144026466 144026772 7.410000e-116 427.0
2 TraesCS4A01G173800 chr4A 93.182 176 10 1 2721 2894 186320173 186320348 1.030000e-64 257.0
3 TraesCS4A01G173800 chr4A 80.198 202 37 2 2211 2409 702060673 702060874 6.460000e-32 148.0
4 TraesCS4A01G173800 chr4A 90.323 93 8 1 325 416 115980599 115980691 1.410000e-23 121.0
5 TraesCS4A01G173800 chr4B 97.740 1062 19 3 947 2006 191079542 191080600 0.000000e+00 1823.0
6 TraesCS4A01G173800 chr4B 91.413 722 33 16 214 925 191078677 191079379 0.000000e+00 963.0
7 TraesCS4A01G173800 chr4B 82.353 459 65 14 2261 2712 49763533 49763982 4.520000e-103 385.0
8 TraesCS4A01G173800 chr4B 81.200 500 63 9 2212 2681 610146311 610146809 9.790000e-100 374.0
9 TraesCS4A01G173800 chr4B 96.190 210 6 2 1997 2204 191081010 191081219 2.760000e-90 342.0
10 TraesCS4A01G173800 chr4B 74.650 785 153 30 1122 1874 191220425 191221195 3.620000e-79 305.0
11 TraesCS4A01G173800 chr4B 94.595 74 4 0 139 212 191078640 191078713 6.550000e-22 115.0
12 TraesCS4A01G173800 chr1A 84.272 941 116 13 975 1899 537048273 537049197 0.000000e+00 889.0
13 TraesCS4A01G173800 chr1A 83.878 918 121 17 999 1895 536974359 536975270 0.000000e+00 850.0
14 TraesCS4A01G173800 chr1A 93.678 174 10 1 2722 2894 306965252 306965079 2.860000e-65 259.0
15 TraesCS4A01G173800 chr1B 83.741 941 123 15 995 1923 598839962 598839040 0.000000e+00 863.0
16 TraesCS4A01G173800 chr1B 84.096 918 119 17 999 1895 598844576 598843665 0.000000e+00 861.0
17 TraesCS4A01G173800 chr1B 81.979 283 42 5 1625 1903 598836902 598836625 6.240000e-57 231.0
18 TraesCS4A01G173800 chr5B 85.824 522 60 10 2212 2721 88343228 88343747 2.540000e-150 542.0
19 TraesCS4A01G173800 chr5B 74.620 855 184 28 1000 1839 504775361 504776197 2.130000e-91 346.0
20 TraesCS4A01G173800 chr4D 85.880 517 53 14 2213 2721 73211937 73211433 1.530000e-147 532.0
21 TraesCS4A01G173800 chr4D 75.430 814 155 29 1093 1874 127155344 127156144 1.280000e-93 353.0
22 TraesCS4A01G173800 chr4D 93.269 208 12 2 2001 2206 127098875 127099082 3.620000e-79 305.0
23 TraesCS4A01G173800 chr2D 85.277 523 62 10 2212 2721 504197697 504198217 2.550000e-145 525.0
24 TraesCS4A01G173800 chr2D 79.293 198 38 3 2214 2409 642304550 642304354 5.030000e-28 135.0
25 TraesCS4A01G173800 chr2D 86.441 59 5 3 263 319 620203361 620203418 8.660000e-06 62.1
26 TraesCS4A01G173800 chr3D 84.230 539 42 13 2215 2721 126394928 126394401 4.340000e-133 484.0
27 TraesCS4A01G173800 chr3D 93.750 176 9 1 2721 2894 113508964 113509139 2.210000e-66 263.0
28 TraesCS4A01G173800 chr5D 83.804 531 56 9 2217 2719 531884010 531883482 7.260000e-131 477.0
29 TraesCS4A01G173800 chr5D 83.529 510 73 10 2216 2721 331514005 331514507 1.570000e-127 466.0
30 TraesCS4A01G173800 chr5D 74.910 833 182 22 1026 1846 417607884 417608701 3.550000e-94 355.0
31 TraesCS4A01G173800 chr5D 79.667 541 69 26 2213 2721 35668182 35667651 4.590000e-93 351.0
32 TraesCS4A01G173800 chr6B 91.531 307 25 1 2416 2721 485128184 485127878 3.450000e-114 422.0
33 TraesCS4A01G173800 chr6B 74.723 811 157 35 1094 1876 82326620 82327410 4.650000e-83 318.0
34 TraesCS4A01G173800 chr6B 80.919 283 37 11 289 559 583587420 583587697 1.050000e-49 207.0
35 TraesCS4A01G173800 chr6B 79.470 151 28 3 2261 2409 694450911 694451060 1.420000e-18 104.0
36 TraesCS4A01G173800 chr6B 100.000 37 0 0 10 46 240428731 240428767 5.170000e-08 69.4
37 TraesCS4A01G173800 chr5A 74.855 863 185 28 1000 1846 531019229 531020075 2.120000e-96 363.0
38 TraesCS4A01G173800 chr5A 94.253 174 9 1 2722 2894 319427710 319427537 6.150000e-67 265.0
39 TraesCS4A01G173800 chr5A 81.604 212 28 6 276 477 480712952 480712742 6.420000e-37 165.0
40 TraesCS4A01G173800 chr6A 74.878 820 157 36 1092 1876 47105152 47105957 7.730000e-86 327.0
41 TraesCS4A01G173800 chr6A 78.894 199 37 5 2215 2409 125881730 125881533 2.340000e-26 130.0
42 TraesCS4A01G173800 chr6A 83.516 91 6 5 274 356 115024103 115024192 3.090000e-10 76.8
43 TraesCS4A01G173800 chrUn 74.694 818 162 31 1092 1876 26997120 26997925 3.600000e-84 322.0
44 TraesCS4A01G173800 chr7D 80.135 443 52 20 2294 2721 155726423 155726844 6.060000e-77 298.0
45 TraesCS4A01G173800 chr7D 93.182 176 10 1 2721 2894 120862057 120861882 1.030000e-64 257.0
46 TraesCS4A01G173800 chr7D 80.838 167 30 2 2245 2409 13470109 13469943 2.340000e-26 130.0
47 TraesCS4A01G173800 chr7D 74.874 199 37 6 2212 2409 371253759 371253945 8.600000e-11 78.7
48 TraesCS4A01G173800 chr7D 100.000 32 0 0 288 319 420740746 420740777 3.110000e-05 60.2
49 TraesCS4A01G173800 chr3B 93.714 175 9 2 2722 2894 574537254 574537428 7.950000e-66 261.0
50 TraesCS4A01G173800 chr3B 93.182 176 11 1 2720 2894 399508642 399508817 1.030000e-64 257.0
51 TraesCS4A01G173800 chr2A 93.296 179 9 2 2719 2894 173139941 173140119 7.950000e-66 261.0
52 TraesCS4A01G173800 chr2A 81.633 294 40 8 277 559 424635135 424635425 6.240000e-57 231.0
53 TraesCS4A01G173800 chr2A 83.588 262 25 14 288 537 510976155 510976410 2.240000e-56 230.0
54 TraesCS4A01G173800 chr2A 83.000 200 32 2 2212 2409 599777276 599777475 2.290000e-41 180.0
55 TraesCS4A01G173800 chr2B 92.222 180 12 1 2717 2894 419556969 419557148 1.330000e-63 254.0
56 TraesCS4A01G173800 chr2B 85.714 119 9 4 277 387 448483302 448483420 5.070000e-23 119.0
57 TraesCS4A01G173800 chr2B 91.304 46 2 2 275 319 759892384 759892428 8.660000e-06 62.1
58 TraesCS4A01G173800 chr7B 82.000 300 36 12 271 558 405652879 405652586 3.730000e-59 239.0
59 TraesCS4A01G173800 chr7B 82.034 295 38 10 275 558 550103048 550103338 1.340000e-58 237.0
60 TraesCS4A01G173800 chr7B 84.681 235 30 6 325 558 604363247 604363476 2.240000e-56 230.0
61 TraesCS4A01G173800 chr7B 81.188 202 33 5 2212 2409 611041017 611040817 1.070000e-34 158.0
62 TraesCS4A01G173800 chr7B 78.607 201 40 3 2212 2409 610748415 610748215 2.340000e-26 130.0
63 TraesCS4A01G173800 chr7B 94.595 37 0 2 288 322 436785343 436785379 4.030000e-04 56.5
64 TraesCS4A01G173800 chr7A 82.192 292 39 11 280 562 66446437 66446150 3.730000e-59 239.0
65 TraesCS4A01G173800 chr7A 82.323 198 31 4 2215 2409 316541498 316541302 4.960000e-38 169.0
66 TraesCS4A01G173800 chr1D 80.402 199 37 2 2213 2409 69527301 69527499 1.800000e-32 150.0
67 TraesCS4A01G173800 chr1D 82.143 140 24 1 2213 2351 252544556 252544417 5.070000e-23 119.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G173800 chr4A 441942991 441945884 2893 True 5345.000000 5345 100.0000 1 2894 1 chr4A.!!$R1 2893
1 TraesCS4A01G173800 chr4B 191078640 191081219 2579 False 810.750000 1823 94.9845 139 2204 4 chr4B.!!$F4 2065
2 TraesCS4A01G173800 chr4B 191220425 191221195 770 False 305.000000 305 74.6500 1122 1874 1 chr4B.!!$F2 752
3 TraesCS4A01G173800 chr1A 537048273 537049197 924 False 889.000000 889 84.2720 975 1899 1 chr1A.!!$F2 924
4 TraesCS4A01G173800 chr1A 536974359 536975270 911 False 850.000000 850 83.8780 999 1895 1 chr1A.!!$F1 896
5 TraesCS4A01G173800 chr1B 598836625 598844576 7951 True 651.666667 863 83.2720 995 1923 3 chr1B.!!$R1 928
6 TraesCS4A01G173800 chr5B 88343228 88343747 519 False 542.000000 542 85.8240 2212 2721 1 chr5B.!!$F1 509
7 TraesCS4A01G173800 chr5B 504775361 504776197 836 False 346.000000 346 74.6200 1000 1839 1 chr5B.!!$F2 839
8 TraesCS4A01G173800 chr4D 73211433 73211937 504 True 532.000000 532 85.8800 2213 2721 1 chr4D.!!$R1 508
9 TraesCS4A01G173800 chr4D 127155344 127156144 800 False 353.000000 353 75.4300 1093 1874 1 chr4D.!!$F2 781
10 TraesCS4A01G173800 chr2D 504197697 504198217 520 False 525.000000 525 85.2770 2212 2721 1 chr2D.!!$F1 509
11 TraesCS4A01G173800 chr3D 126394401 126394928 527 True 484.000000 484 84.2300 2215 2721 1 chr3D.!!$R1 506
12 TraesCS4A01G173800 chr5D 531883482 531884010 528 True 477.000000 477 83.8040 2217 2719 1 chr5D.!!$R2 502
13 TraesCS4A01G173800 chr5D 331514005 331514507 502 False 466.000000 466 83.5290 2216 2721 1 chr5D.!!$F1 505
14 TraesCS4A01G173800 chr5D 417607884 417608701 817 False 355.000000 355 74.9100 1026 1846 1 chr5D.!!$F2 820
15 TraesCS4A01G173800 chr5D 35667651 35668182 531 True 351.000000 351 79.6670 2213 2721 1 chr5D.!!$R1 508
16 TraesCS4A01G173800 chr6B 82326620 82327410 790 False 318.000000 318 74.7230 1094 1876 1 chr6B.!!$F1 782
17 TraesCS4A01G173800 chr5A 531019229 531020075 846 False 363.000000 363 74.8550 1000 1846 1 chr5A.!!$F1 846
18 TraesCS4A01G173800 chr6A 47105152 47105957 805 False 327.000000 327 74.8780 1092 1876 1 chr6A.!!$F1 784
19 TraesCS4A01G173800 chrUn 26997120 26997925 805 False 322.000000 322 74.6940 1092 1876 1 chrUn.!!$F1 784

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
120 121 0.108138 AGGATTCTTTGAGGCCGTCG 60.108 55.0 0.0 0.0 0.0 5.12 F
121 122 0.391263 GGATTCTTTGAGGCCGTCGT 60.391 55.0 0.0 0.0 0.0 4.34 F
123 124 0.391263 ATTCTTTGAGGCCGTCGTCC 60.391 55.0 0.0 0.0 0.0 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1378 5017 0.833287 AGCATGTAGGCGTTCCAGAT 59.167 50.000 0.0 0.0 39.27 2.90 R
1446 5085 1.476488 TCGATGAAGAAGTCGATGCCA 59.524 47.619 0.0 0.0 41.44 4.92 R
2109 8647 2.604614 GGCGTGTGAACTCATTGGAAAC 60.605 50.000 0.0 0.0 0.00 2.78 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 6.494059 AGGTTATTTTTGTCCCTAGCTTCAT 58.506 36.000 0.00 0.00 0.00 2.57
27 28 7.639378 AGGTTATTTTTGTCCCTAGCTTCATA 58.361 34.615 0.00 0.00 0.00 2.15
28 29 8.282256 AGGTTATTTTTGTCCCTAGCTTCATAT 58.718 33.333 0.00 0.00 0.00 1.78
33 34 8.908786 TTTTTGTCCCTAGCTTCATATATGAG 57.091 34.615 14.86 10.63 38.19 2.90
34 35 7.855784 TTTGTCCCTAGCTTCATATATGAGA 57.144 36.000 14.86 5.20 38.19 3.27
35 36 8.441311 TTTGTCCCTAGCTTCATATATGAGAT 57.559 34.615 14.86 10.73 38.19 2.75
36 37 8.441311 TTGTCCCTAGCTTCATATATGAGATT 57.559 34.615 14.86 7.60 38.19 2.40
37 38 7.845037 TGTCCCTAGCTTCATATATGAGATTG 58.155 38.462 14.86 9.29 38.19 2.67
38 39 7.675619 TGTCCCTAGCTTCATATATGAGATTGA 59.324 37.037 14.86 0.13 38.19 2.57
39 40 8.535335 GTCCCTAGCTTCATATATGAGATTGAA 58.465 37.037 14.86 0.26 38.19 2.69
40 41 9.104713 TCCCTAGCTTCATATATGAGATTGAAA 57.895 33.333 14.86 0.00 38.19 2.69
52 53 2.648059 AGATTGAAATCTCCAAGGGCG 58.352 47.619 0.00 0.00 41.82 6.13
53 54 2.239654 AGATTGAAATCTCCAAGGGCGA 59.760 45.455 0.00 0.00 41.82 5.54
57 58 0.918983 AAATCTCCAAGGGCGATCCA 59.081 50.000 0.00 0.00 38.24 3.41
58 59 0.471617 AATCTCCAAGGGCGATCCAG 59.528 55.000 0.00 0.00 38.24 3.86
59 60 1.414061 ATCTCCAAGGGCGATCCAGG 61.414 60.000 0.00 0.00 38.24 4.45
60 61 3.089874 TCCAAGGGCGATCCAGGG 61.090 66.667 0.00 0.00 38.24 4.45
61 62 4.195334 CCAAGGGCGATCCAGGGG 62.195 72.222 0.00 0.00 38.24 4.79
62 63 3.089874 CAAGGGCGATCCAGGGGA 61.090 66.667 0.00 0.00 38.24 4.81
63 64 2.770048 AAGGGCGATCCAGGGGAG 60.770 66.667 0.00 0.00 38.24 4.30
64 65 4.888325 AGGGCGATCCAGGGGAGG 62.888 72.222 0.00 0.00 38.24 4.30
67 68 4.247380 GCGATCCAGGGGAGGCTG 62.247 72.222 0.00 0.00 34.05 4.85
68 69 2.444706 CGATCCAGGGGAGGCTGA 60.445 66.667 0.00 0.00 34.05 4.26
69 70 1.840650 CGATCCAGGGGAGGCTGAT 60.841 63.158 0.00 0.00 34.05 2.90
70 71 1.759881 GATCCAGGGGAGGCTGATG 59.240 63.158 0.00 0.00 34.05 3.07
71 72 2.408880 GATCCAGGGGAGGCTGATGC 62.409 65.000 0.00 0.00 34.05 3.91
72 73 3.414193 CCAGGGGAGGCTGATGCA 61.414 66.667 0.00 0.00 41.91 3.96
73 74 2.192443 CAGGGGAGGCTGATGCAG 59.808 66.667 0.00 0.00 41.91 4.41
74 75 3.095163 AGGGGAGGCTGATGCAGG 61.095 66.667 0.00 0.00 41.91 4.85
75 76 4.201122 GGGGAGGCTGATGCAGGG 62.201 72.222 0.00 0.00 41.91 4.45
76 77 4.201122 GGGAGGCTGATGCAGGGG 62.201 72.222 0.00 0.00 41.91 4.79
77 78 4.891037 GGAGGCTGATGCAGGGGC 62.891 72.222 0.00 0.00 41.91 5.80
87 88 4.816984 GCAGGGGCAGCAGAGCAT 62.817 66.667 0.00 0.00 40.72 3.79
88 89 2.913501 CAGGGGCAGCAGAGCATA 59.086 61.111 0.00 0.00 35.83 3.14
90 91 0.178998 CAGGGGCAGCAGAGCATAAT 60.179 55.000 0.00 0.00 35.83 1.28
91 92 0.554792 AGGGGCAGCAGAGCATAATT 59.445 50.000 0.00 0.00 35.83 1.40
92 93 0.957362 GGGGCAGCAGAGCATAATTC 59.043 55.000 0.00 0.00 35.83 2.17
93 94 1.683943 GGGCAGCAGAGCATAATTCA 58.316 50.000 0.00 0.00 35.83 2.57
94 95 1.607628 GGGCAGCAGAGCATAATTCAG 59.392 52.381 0.00 0.00 35.83 3.02
95 96 1.001597 GGCAGCAGAGCATAATTCAGC 60.002 52.381 0.00 0.00 35.83 4.26
97 98 3.136763 GCAGCAGAGCATAATTCAGCTA 58.863 45.455 4.70 0.00 42.04 3.32
99 100 4.629092 CAGCAGAGCATAATTCAGCTAGA 58.371 43.478 4.70 0.00 42.04 2.43
102 103 5.759273 AGCAGAGCATAATTCAGCTAGAAAG 59.241 40.000 4.70 0.00 42.04 2.62
105 106 6.935771 CAGAGCATAATTCAGCTAGAAAGGAT 59.064 38.462 4.70 0.00 42.04 3.24
106 107 7.444792 CAGAGCATAATTCAGCTAGAAAGGATT 59.555 37.037 4.70 0.00 42.04 3.01
107 108 7.661027 AGAGCATAATTCAGCTAGAAAGGATTC 59.339 37.037 4.70 0.00 42.04 2.52
109 110 7.997803 AGCATAATTCAGCTAGAAAGGATTCTT 59.002 33.333 2.96 0.00 45.20 2.52
110 111 8.628280 GCATAATTCAGCTAGAAAGGATTCTTT 58.372 33.333 0.00 0.00 43.43 2.52
111 112 9.947669 CATAATTCAGCTAGAAAGGATTCTTTG 57.052 33.333 2.93 0.00 43.43 2.77
112 113 9.911788 ATAATTCAGCTAGAAAGGATTCTTTGA 57.088 29.630 2.93 0.00 43.43 2.69
114 115 5.738909 TCAGCTAGAAAGGATTCTTTGAGG 58.261 41.667 2.93 0.00 43.43 3.86
116 117 3.629855 GCTAGAAAGGATTCTTTGAGGCC 59.370 47.826 2.93 0.00 43.43 5.19
117 118 2.716217 AGAAAGGATTCTTTGAGGCCG 58.284 47.619 2.93 0.00 43.43 6.13
118 119 2.040412 AGAAAGGATTCTTTGAGGCCGT 59.960 45.455 2.93 0.00 43.43 5.68
119 120 2.115343 AAGGATTCTTTGAGGCCGTC 57.885 50.000 0.00 0.00 0.00 4.79
120 121 0.108138 AGGATTCTTTGAGGCCGTCG 60.108 55.000 0.00 0.00 0.00 5.12
121 122 0.391263 GGATTCTTTGAGGCCGTCGT 60.391 55.000 0.00 0.00 0.00 4.34
122 123 1.000145 GATTCTTTGAGGCCGTCGTC 59.000 55.000 0.00 0.00 0.00 4.20
123 124 0.391263 ATTCTTTGAGGCCGTCGTCC 60.391 55.000 0.00 0.00 0.00 4.79
124 125 2.758770 TTCTTTGAGGCCGTCGTCCG 62.759 60.000 0.00 0.00 0.00 4.79
126 127 3.562779 TTTGAGGCCGTCGTCCGTC 62.563 63.158 0.00 0.00 33.66 4.79
132 133 4.157958 CCGTCGTCCGTCGTCCTC 62.158 72.222 5.71 0.00 40.80 3.71
133 134 4.157958 CGTCGTCCGTCGTCCTCC 62.158 72.222 0.00 0.00 40.80 4.30
134 135 2.745492 GTCGTCCGTCGTCCTCCT 60.745 66.667 0.00 0.00 40.80 3.69
136 137 1.153489 TCGTCCGTCGTCCTCCTAG 60.153 63.158 0.00 0.00 40.80 3.02
137 138 1.449246 CGTCCGTCGTCCTCCTAGT 60.449 63.158 0.00 0.00 34.52 2.57
170 171 5.738693 CACATGTTGGTTCGCATACAAATAG 59.261 40.000 0.00 0.00 0.00 1.73
217 218 4.063998 CTAGATAGCATGTGCCTGTTGA 57.936 45.455 0.57 0.00 43.38 3.18
218 219 3.354948 AGATAGCATGTGCCTGTTGAA 57.645 42.857 0.57 0.00 43.38 2.69
219 220 3.012518 AGATAGCATGTGCCTGTTGAAC 58.987 45.455 0.57 0.00 43.38 3.18
220 221 2.566833 TAGCATGTGCCTGTTGAACT 57.433 45.000 0.57 0.00 43.38 3.01
222 223 0.670162 GCATGTGCCTGTTGAACTGT 59.330 50.000 0.00 0.00 34.31 3.55
223 224 1.601162 GCATGTGCCTGTTGAACTGTG 60.601 52.381 0.00 0.00 34.31 3.66
224 225 1.677576 CATGTGCCTGTTGAACTGTGT 59.322 47.619 0.00 0.00 0.00 3.72
225 226 1.093972 TGTGCCTGTTGAACTGTGTG 58.906 50.000 0.00 0.00 0.00 3.82
226 227 1.339535 TGTGCCTGTTGAACTGTGTGA 60.340 47.619 0.00 0.00 0.00 3.58
227 228 1.949525 GTGCCTGTTGAACTGTGTGAT 59.050 47.619 0.00 0.00 0.00 3.06
228 229 2.358898 GTGCCTGTTGAACTGTGTGATT 59.641 45.455 0.00 0.00 0.00 2.57
229 230 3.023119 TGCCTGTTGAACTGTGTGATTT 58.977 40.909 0.00 0.00 0.00 2.17
230 231 3.181488 TGCCTGTTGAACTGTGTGATTTG 60.181 43.478 0.00 0.00 0.00 2.32
231 232 3.181487 GCCTGTTGAACTGTGTGATTTGT 60.181 43.478 0.00 0.00 0.00 2.83
232 233 4.677779 GCCTGTTGAACTGTGTGATTTGTT 60.678 41.667 0.00 0.00 0.00 2.83
233 234 4.799949 CCTGTTGAACTGTGTGATTTGTTG 59.200 41.667 0.00 0.00 0.00 3.33
234 235 4.172505 TGTTGAACTGTGTGATTTGTTGC 58.827 39.130 0.00 0.00 0.00 4.17
235 236 4.082300 TGTTGAACTGTGTGATTTGTTGCT 60.082 37.500 0.00 0.00 0.00 3.91
236 237 5.124617 TGTTGAACTGTGTGATTTGTTGCTA 59.875 36.000 0.00 0.00 0.00 3.49
239 240 5.356751 TGAACTGTGTGATTTGTTGCTAACT 59.643 36.000 0.00 0.00 0.00 2.24
240 241 6.540551 TGAACTGTGTGATTTGTTGCTAACTA 59.459 34.615 0.00 0.00 0.00 2.24
241 242 6.545504 ACTGTGTGATTTGTTGCTAACTAG 57.454 37.500 0.00 0.00 0.00 2.57
252 253 3.760693 CTAACTAGCATGTGCCCGT 57.239 52.632 0.57 0.00 43.38 5.28
253 254 2.882927 CTAACTAGCATGTGCCCGTA 57.117 50.000 0.57 0.00 43.38 4.02
261 262 7.177832 ACTAGCATGTGCCCGTAATATATAA 57.822 36.000 0.57 0.00 43.38 0.98
271 272 9.033481 GTGCCCGTAATATATAAATACGCATTA 57.967 33.333 18.74 7.97 40.66 1.90
272 273 9.767228 TGCCCGTAATATATAAATACGCATTAT 57.233 29.630 18.74 0.00 40.66 1.28
309 310 9.614792 ACATCTAAATAGTTGATTCCCACTAAC 57.385 33.333 5.70 0.00 0.00 2.34
319 320 9.268282 AGTTGATTCCCACTAACTCTAATTCTA 57.732 33.333 0.00 0.00 0.00 2.10
352 361 4.221041 ACATCATCAAATGTGCCACATCAA 59.779 37.500 11.38 0.00 37.97 2.57
364 373 4.022416 GTGCCACATCAACATCCACTAAAA 60.022 41.667 0.00 0.00 0.00 1.52
365 374 4.022416 TGCCACATCAACATCCACTAAAAC 60.022 41.667 0.00 0.00 0.00 2.43
366 375 4.218417 GCCACATCAACATCCACTAAAACT 59.782 41.667 0.00 0.00 0.00 2.66
371 380 9.912634 CACATCAACATCCACTAAAACTATTTT 57.087 29.630 0.00 0.00 36.67 1.82
426 435 4.715534 TCTCCAATGGTTCAACCTTACA 57.284 40.909 8.40 0.00 39.58 2.41
432 441 5.126869 CCAATGGTTCAACCTTACATGCATA 59.873 40.000 8.40 0.00 39.58 3.14
439 448 5.664457 TCAACCTTACATGCATACTCTCTG 58.336 41.667 0.00 0.00 0.00 3.35
453 462 7.278646 TGCATACTCTCTGTTCACACAATTATC 59.721 37.037 0.00 0.00 30.36 1.75
568 577 4.697352 GCAATCACCTAGTTCATGTGTTCT 59.303 41.667 0.00 0.00 0.00 3.01
612 621 1.779683 GTACGTCGCTTTGACTGGC 59.220 57.895 0.00 0.00 45.87 4.85
623 632 4.631131 GCTTTGACTGGCCTGTTTAAAAT 58.369 39.130 17.25 0.00 0.00 1.82
711 720 5.079643 TCCATCTATCCTTGATGTCGATCA 58.920 41.667 0.00 0.00 39.54 2.92
712 721 5.718607 TCCATCTATCCTTGATGTCGATCAT 59.281 40.000 0.00 0.00 38.43 2.45
714 723 6.877855 CCATCTATCCTTGATGTCGATCATTT 59.122 38.462 0.00 0.00 38.43 2.32
715 724 7.389884 CCATCTATCCTTGATGTCGATCATTTT 59.610 37.037 0.00 0.00 38.43 1.82
716 725 7.953158 TCTATCCTTGATGTCGATCATTTTC 57.047 36.000 0.00 0.00 38.43 2.29
718 727 4.842574 TCCTTGATGTCGATCATTTTCCA 58.157 39.130 0.00 0.00 38.43 3.53
719 728 5.439721 TCCTTGATGTCGATCATTTTCCAT 58.560 37.500 0.00 0.00 38.43 3.41
720 729 6.591001 TCCTTGATGTCGATCATTTTCCATA 58.409 36.000 0.00 0.00 38.43 2.74
722 731 7.555914 TCCTTGATGTCGATCATTTTCCATAAA 59.444 33.333 0.00 0.00 38.43 1.40
723 732 8.190122 CCTTGATGTCGATCATTTTCCATAAAA 58.810 33.333 0.00 0.00 38.43 1.52
792 801 1.067283 CGTCTTGATGTGAGCTGTCCT 60.067 52.381 0.00 0.00 0.00 3.85
801 810 2.637382 TGTGAGCTGTCCTCCATGTTAA 59.363 45.455 0.00 0.00 39.98 2.01
804 813 4.081642 GTGAGCTGTCCTCCATGTTAAGTA 60.082 45.833 0.00 0.00 39.98 2.24
807 816 4.471386 AGCTGTCCTCCATGTTAAGTATGT 59.529 41.667 0.00 0.00 0.00 2.29
809 818 6.156256 AGCTGTCCTCCATGTTAAGTATGTTA 59.844 38.462 0.00 0.00 0.00 2.41
813 822 6.935208 GTCCTCCATGTTAAGTATGTTATCCC 59.065 42.308 0.00 0.00 0.00 3.85
814 823 5.932303 CCTCCATGTTAAGTATGTTATCCCG 59.068 44.000 0.00 0.00 0.00 5.14
815 824 6.463897 CCTCCATGTTAAGTATGTTATCCCGT 60.464 42.308 0.00 0.00 0.00 5.28
816 825 6.518493 TCCATGTTAAGTATGTTATCCCGTC 58.482 40.000 0.00 0.00 0.00 4.79
818 827 5.936187 TGTTAAGTATGTTATCCCGTCCA 57.064 39.130 0.00 0.00 0.00 4.02
819 828 6.488769 TGTTAAGTATGTTATCCCGTCCAT 57.511 37.500 0.00 0.00 0.00 3.41
820 829 6.285224 TGTTAAGTATGTTATCCCGTCCATG 58.715 40.000 0.00 0.00 0.00 3.66
821 830 4.351874 AAGTATGTTATCCCGTCCATGG 57.648 45.455 4.97 4.97 0.00 3.66
919 928 0.882927 GACTTACTTGTGCGGTGCCA 60.883 55.000 0.00 0.00 0.00 4.92
926 935 1.387295 TTGTGCGGTGCCATTTGTCA 61.387 50.000 0.00 0.00 0.00 3.58
927 936 1.361993 GTGCGGTGCCATTTGTCAA 59.638 52.632 0.00 0.00 0.00 3.18
930 939 0.878416 GCGGTGCCATTTGTCAACTA 59.122 50.000 0.00 0.00 0.00 2.24
931 940 1.472480 GCGGTGCCATTTGTCAACTAT 59.528 47.619 0.00 0.00 0.00 2.12
934 943 3.242739 CGGTGCCATTTGTCAACTATAGC 60.243 47.826 0.00 0.00 0.00 2.97
935 944 3.947834 GGTGCCATTTGTCAACTATAGCT 59.052 43.478 0.00 0.00 0.00 3.32
937 946 5.237344 GGTGCCATTTGTCAACTATAGCTAG 59.763 44.000 0.00 0.00 0.00 3.42
940 949 6.183360 TGCCATTTGTCAACTATAGCTAGCTA 60.183 38.462 26.09 26.09 0.00 3.32
942 951 7.437748 CCATTTGTCAACTATAGCTAGCTAGT 58.562 38.462 27.42 20.45 31.45 2.57
1055 4682 3.898509 CCTCGCGGCTCTCCTCTG 61.899 72.222 6.13 0.00 0.00 3.35
1878 7996 2.032620 ACCAACTATAGCAGCTACGCT 58.967 47.619 3.59 3.79 46.26 5.07
1945 8064 4.000325 TGAATTTGGTGTATCCGTCTGTG 59.000 43.478 0.00 0.00 39.52 3.66
1955 8074 2.933495 TCCGTCTGTGTACTGCATAC 57.067 50.000 0.00 0.00 0.00 2.39
1956 8075 2.443416 TCCGTCTGTGTACTGCATACT 58.557 47.619 0.00 0.00 34.56 2.12
1957 8076 2.422479 TCCGTCTGTGTACTGCATACTC 59.578 50.000 0.00 0.00 34.56 2.59
2026 8564 5.009510 TGTGCAGTTGTGTGCTTTATACAAT 59.990 36.000 0.00 0.00 41.51 2.71
2062 8600 6.840780 CCTCTGTGAAGGTTTGGATTAATT 57.159 37.500 0.00 0.00 0.00 1.40
2079 8617 7.093552 TGGATTAATTGATGGATTTCCGTGTTT 60.094 33.333 0.00 0.00 39.43 2.83
2109 8647 3.422343 GCTCGATCACTTTCTTTGTCACG 60.422 47.826 0.00 0.00 0.00 4.35
2148 8687 1.674359 CCGGGCATGCTATACAAACA 58.326 50.000 18.92 0.00 0.00 2.83
2204 8744 3.366985 CCGGGAGTAAATTGCTCAAAACC 60.367 47.826 12.84 4.13 34.83 3.27
2205 8745 3.254657 CGGGAGTAAATTGCTCAAAACCA 59.745 43.478 12.84 0.00 34.83 3.67
2206 8746 4.082245 CGGGAGTAAATTGCTCAAAACCAT 60.082 41.667 12.84 0.00 34.83 3.55
2207 8747 5.410924 GGGAGTAAATTGCTCAAAACCATC 58.589 41.667 12.84 0.00 34.83 3.51
2208 8748 5.047377 GGGAGTAAATTGCTCAAAACCATCA 60.047 40.000 12.84 0.00 34.83 3.07
2209 8749 5.863935 GGAGTAAATTGCTCAAAACCATCAC 59.136 40.000 12.84 0.00 34.83 3.06
2210 8750 6.403866 AGTAAATTGCTCAAAACCATCACA 57.596 33.333 0.00 0.00 0.00 3.58
2223 8763 3.668447 ACCATCACACTTAGAGCAACTG 58.332 45.455 0.00 0.00 0.00 3.16
2229 8769 1.867233 CACTTAGAGCAACTGCAACGT 59.133 47.619 4.22 0.00 45.16 3.99
2256 8797 1.135344 CCAAACGGACGGTGTTTTGTT 60.135 47.619 0.00 0.00 37.44 2.83
2315 8867 4.020039 TGTCCGCCCTGTTTTAGATTTAGA 60.020 41.667 0.00 0.00 0.00 2.10
2316 8868 4.331992 GTCCGCCCTGTTTTAGATTTAGAC 59.668 45.833 0.00 0.00 0.00 2.59
2322 8874 4.698304 CCTGTTTTAGATTTAGACCGGCAA 59.302 41.667 0.00 0.00 0.00 4.52
2326 8878 2.418368 AGATTTAGACCGGCAATGCA 57.582 45.000 7.79 0.00 0.00 3.96
2368 8921 5.211266 TCATGTCCGCACGTAATTTTTAG 57.789 39.130 0.00 0.00 0.00 1.85
2374 8931 6.018098 TGTCCGCACGTAATTTTTAGAAAAGA 60.018 34.615 0.00 0.00 0.00 2.52
2376 8933 6.203338 TCCGCACGTAATTTTTAGAAAAGACT 59.797 34.615 0.00 0.00 0.00 3.24
2380 8937 6.518736 CACGTAATTTTTAGAAAAGACTCGCC 59.481 38.462 0.00 0.00 0.00 5.54
2440 9029 4.688021 GGCTTCAAAATAACACCACACAA 58.312 39.130 0.00 0.00 0.00 3.33
2558 9151 0.462581 CAGCACACCTGTCGGCATAT 60.463 55.000 0.00 0.00 36.79 1.78
2642 9236 1.004918 CTTCTCGAACCACGGCCTT 60.005 57.895 0.00 0.00 42.82 4.35
2681 9275 4.946157 GTGTTGAGATCCACCTTCATGATT 59.054 41.667 0.00 0.00 0.00 2.57
2723 9317 2.285827 CGAGAGCCGATTCTTTCTGT 57.714 50.000 0.00 0.00 41.76 3.41
2724 9318 2.611518 CGAGAGCCGATTCTTTCTGTT 58.388 47.619 0.00 0.00 41.76 3.16
2725 9319 2.346847 CGAGAGCCGATTCTTTCTGTTG 59.653 50.000 0.00 0.00 41.76 3.33
2726 9320 2.675348 GAGAGCCGATTCTTTCTGTTGG 59.325 50.000 0.00 0.00 0.00 3.77
2727 9321 1.740025 GAGCCGATTCTTTCTGTTGGG 59.260 52.381 0.00 0.00 0.00 4.12
2728 9322 1.351017 AGCCGATTCTTTCTGTTGGGA 59.649 47.619 0.00 0.00 0.00 4.37
2729 9323 2.159382 GCCGATTCTTTCTGTTGGGAA 58.841 47.619 0.00 0.00 0.00 3.97
2730 9324 2.556622 GCCGATTCTTTCTGTTGGGAAA 59.443 45.455 0.00 0.00 34.55 3.13
2731 9325 3.611766 GCCGATTCTTTCTGTTGGGAAAC 60.612 47.826 0.00 0.00 32.63 2.78
2732 9326 3.364964 CCGATTCTTTCTGTTGGGAAACG 60.365 47.826 0.00 0.00 35.08 3.60
2733 9327 3.250040 CGATTCTTTCTGTTGGGAAACGT 59.750 43.478 0.00 0.00 32.29 3.99
2734 9328 4.449743 CGATTCTTTCTGTTGGGAAACGTA 59.550 41.667 0.00 0.00 32.29 3.57
2735 9329 5.389516 CGATTCTTTCTGTTGGGAAACGTAG 60.390 44.000 0.00 0.00 32.29 3.51
2736 9330 3.135994 TCTTTCTGTTGGGAAACGTAGC 58.864 45.455 0.00 0.00 32.63 3.58
2737 9331 2.623878 TTCTGTTGGGAAACGTAGCA 57.376 45.000 0.00 0.00 0.00 3.49
2738 9332 2.851263 TCTGTTGGGAAACGTAGCAT 57.149 45.000 0.00 0.00 0.00 3.79
2739 9333 2.422597 TCTGTTGGGAAACGTAGCATG 58.577 47.619 0.00 0.00 0.00 4.06
2740 9334 0.878416 TGTTGGGAAACGTAGCATGC 59.122 50.000 10.51 10.51 0.00 4.06
2741 9335 0.878416 GTTGGGAAACGTAGCATGCA 59.122 50.000 21.98 2.77 0.00 3.96
2742 9336 1.268352 GTTGGGAAACGTAGCATGCAA 59.732 47.619 21.98 0.00 0.00 4.08
2743 9337 1.832883 TGGGAAACGTAGCATGCAAT 58.167 45.000 21.98 1.90 0.00 3.56
2744 9338 2.166829 TGGGAAACGTAGCATGCAATT 58.833 42.857 21.98 6.80 0.00 2.32
2745 9339 2.560542 TGGGAAACGTAGCATGCAATTT 59.439 40.909 21.98 13.67 0.00 1.82
2746 9340 3.006323 TGGGAAACGTAGCATGCAATTTT 59.994 39.130 21.98 12.86 0.00 1.82
2747 9341 4.218635 TGGGAAACGTAGCATGCAATTTTA 59.781 37.500 21.98 0.00 0.00 1.52
2748 9342 5.164954 GGGAAACGTAGCATGCAATTTTAA 58.835 37.500 21.98 0.00 0.00 1.52
2749 9343 5.635700 GGGAAACGTAGCATGCAATTTTAAA 59.364 36.000 21.98 0.00 0.00 1.52
2750 9344 6.146347 GGGAAACGTAGCATGCAATTTTAAAA 59.854 34.615 21.98 2.51 0.00 1.52
2751 9345 7.307455 GGGAAACGTAGCATGCAATTTTAAAAA 60.307 33.333 21.98 0.00 0.00 1.94
2752 9346 8.227119 GGAAACGTAGCATGCAATTTTAAAAAT 58.773 29.630 21.98 0.00 0.00 1.82
2753 9347 9.592720 GAAACGTAGCATGCAATTTTAAAAATT 57.407 25.926 21.98 0.00 0.00 1.82
2754 9348 9.592720 AAACGTAGCATGCAATTTTAAAAATTC 57.407 25.926 21.98 0.00 0.00 2.17
2755 9349 7.738345 ACGTAGCATGCAATTTTAAAAATTCC 58.262 30.769 21.98 0.00 0.00 3.01
2756 9350 7.602265 ACGTAGCATGCAATTTTAAAAATTCCT 59.398 29.630 21.98 0.00 0.00 3.36
2757 9351 9.081997 CGTAGCATGCAATTTTAAAAATTCCTA 57.918 29.630 21.98 0.00 0.00 2.94
2760 9354 9.669887 AGCATGCAATTTTAAAAATTCCTATGA 57.330 25.926 21.98 0.00 0.00 2.15
2767 9361 9.868277 AATTTTAAAAATTCCTATGATCACGCA 57.132 25.926 4.44 0.00 0.00 5.24
2768 9362 9.868277 ATTTTAAAAATTCCTATGATCACGCAA 57.132 25.926 4.44 0.00 0.00 4.85
2770 9364 6.757897 AAAAATTCCTATGATCACGCAAGA 57.242 33.333 0.00 0.00 43.62 3.02
2771 9365 6.949352 AAAATTCCTATGATCACGCAAGAT 57.051 33.333 0.00 0.00 43.62 2.40
2772 9366 6.551385 AAATTCCTATGATCACGCAAGATC 57.449 37.500 0.00 8.11 43.69 2.75
2773 9367 4.944619 TTCCTATGATCACGCAAGATCT 57.055 40.909 14.33 0.00 43.76 2.75
2774 9368 6.596309 ATTCCTATGATCACGCAAGATCTA 57.404 37.500 14.33 4.31 43.76 1.98
2775 9369 6.596309 TTCCTATGATCACGCAAGATCTAT 57.404 37.500 14.33 9.67 43.76 1.98
2776 9370 6.201226 TCCTATGATCACGCAAGATCTATC 57.799 41.667 14.33 0.00 43.76 2.08
2777 9371 5.948758 TCCTATGATCACGCAAGATCTATCT 59.051 40.000 14.33 0.00 43.76 1.98
2778 9372 7.112779 TCCTATGATCACGCAAGATCTATCTA 58.887 38.462 14.33 0.00 43.76 1.98
2779 9373 7.281999 TCCTATGATCACGCAAGATCTATCTAG 59.718 40.741 14.33 10.18 43.76 2.43
2780 9374 5.635417 TGATCACGCAAGATCTATCTAGG 57.365 43.478 14.33 0.00 43.76 3.02
2781 9375 5.316987 TGATCACGCAAGATCTATCTAGGA 58.683 41.667 14.33 0.00 43.76 2.94
2782 9376 5.770162 TGATCACGCAAGATCTATCTAGGAA 59.230 40.000 14.33 0.00 43.76 3.36
2783 9377 6.265422 TGATCACGCAAGATCTATCTAGGAAA 59.735 38.462 14.33 0.00 43.76 3.13
2784 9378 6.656632 TCACGCAAGATCTATCTAGGAAAT 57.343 37.500 0.00 0.00 43.62 2.17
2785 9379 6.450545 TCACGCAAGATCTATCTAGGAAATG 58.549 40.000 0.00 0.00 43.62 2.32
2786 9380 5.119898 CACGCAAGATCTATCTAGGAAATGC 59.880 44.000 0.00 0.00 43.62 3.56
2787 9381 5.221521 ACGCAAGATCTATCTAGGAAATGCA 60.222 40.000 0.00 0.00 43.62 3.96
2788 9382 5.873712 CGCAAGATCTATCTAGGAAATGCAT 59.126 40.000 0.00 0.00 34.51 3.96
2789 9383 7.038048 CGCAAGATCTATCTAGGAAATGCATA 58.962 38.462 0.00 0.00 34.51 3.14
2790 9384 7.222417 CGCAAGATCTATCTAGGAAATGCATAG 59.778 40.741 0.00 0.00 34.51 2.23
2791 9385 7.011295 GCAAGATCTATCTAGGAAATGCATAGC 59.989 40.741 0.00 0.00 35.76 2.97
2792 9386 7.730672 AGATCTATCTAGGAAATGCATAGCA 57.269 36.000 0.00 0.00 38.03 3.49
2793 9387 8.143673 AGATCTATCTAGGAAATGCATAGCAA 57.856 34.615 0.00 0.00 37.47 3.91
2794 9388 8.770322 AGATCTATCTAGGAAATGCATAGCAAT 58.230 33.333 0.00 0.00 37.47 3.56
2795 9389 8.734218 ATCTATCTAGGAAATGCATAGCAATG 57.266 34.615 0.00 0.00 43.62 2.82
2796 9390 7.910584 TCTATCTAGGAAATGCATAGCAATGA 58.089 34.615 0.00 0.00 43.62 2.57
2797 9391 8.039538 TCTATCTAGGAAATGCATAGCAATGAG 58.960 37.037 0.00 0.00 43.62 2.90
2798 9392 6.178607 TCTAGGAAATGCATAGCAATGAGA 57.821 37.500 0.00 0.00 43.62 3.27
2799 9393 6.228995 TCTAGGAAATGCATAGCAATGAGAG 58.771 40.000 0.00 0.00 43.62 3.20
2800 9394 4.142790 AGGAAATGCATAGCAATGAGAGG 58.857 43.478 0.00 0.00 43.62 3.69
2801 9395 3.255149 GGAAATGCATAGCAATGAGAGGG 59.745 47.826 0.00 0.00 43.62 4.30
2802 9396 2.581216 ATGCATAGCAATGAGAGGGG 57.419 50.000 0.00 0.00 43.62 4.79
2803 9397 0.475475 TGCATAGCAATGAGAGGGGG 59.525 55.000 0.00 0.00 34.76 5.40
2804 9398 0.767375 GCATAGCAATGAGAGGGGGA 59.233 55.000 0.00 0.00 34.84 4.81
2805 9399 1.271271 GCATAGCAATGAGAGGGGGAG 60.271 57.143 0.00 0.00 34.84 4.30
2806 9400 2.333069 CATAGCAATGAGAGGGGGAGA 58.667 52.381 0.00 0.00 34.84 3.71
2807 9401 2.094100 TAGCAATGAGAGGGGGAGAG 57.906 55.000 0.00 0.00 0.00 3.20
2808 9402 0.043940 AGCAATGAGAGGGGGAGAGT 59.956 55.000 0.00 0.00 0.00 3.24
2809 9403 0.179936 GCAATGAGAGGGGGAGAGTG 59.820 60.000 0.00 0.00 0.00 3.51
2810 9404 1.577736 CAATGAGAGGGGGAGAGTGT 58.422 55.000 0.00 0.00 0.00 3.55
2811 9405 1.209019 CAATGAGAGGGGGAGAGTGTG 59.791 57.143 0.00 0.00 0.00 3.82
2812 9406 0.415429 ATGAGAGGGGGAGAGTGTGT 59.585 55.000 0.00 0.00 0.00 3.72
2813 9407 0.251832 TGAGAGGGGGAGAGTGTGTC 60.252 60.000 0.00 0.00 0.00 3.67
2814 9408 0.973496 GAGAGGGGGAGAGTGTGTCC 60.973 65.000 0.00 0.00 0.00 4.02
2815 9409 1.229209 GAGGGGGAGAGTGTGTCCA 60.229 63.158 0.00 0.00 35.57 4.02
2816 9410 1.536662 AGGGGGAGAGTGTGTCCAC 60.537 63.158 0.00 0.00 42.17 4.02
2817 9411 2.657237 GGGGAGAGTGTGTCCACG 59.343 66.667 0.00 0.00 46.56 4.94
2818 9412 2.207924 GGGGAGAGTGTGTCCACGT 61.208 63.158 0.00 0.00 46.56 4.49
2819 9413 0.896940 GGGGAGAGTGTGTCCACGTA 60.897 60.000 0.00 0.00 46.56 3.57
2820 9414 0.243095 GGGAGAGTGTGTCCACGTAC 59.757 60.000 0.00 0.00 46.56 3.67
2821 9415 0.243095 GGAGAGTGTGTCCACGTACC 59.757 60.000 0.00 0.00 46.56 3.34
2822 9416 0.243095 GAGAGTGTGTCCACGTACCC 59.757 60.000 0.00 0.00 46.56 3.69
2823 9417 0.178970 AGAGTGTGTCCACGTACCCT 60.179 55.000 0.00 0.00 46.56 4.34
2824 9418 0.243095 GAGTGTGTCCACGTACCCTC 59.757 60.000 0.00 0.00 46.56 4.30
2825 9419 1.080974 GTGTGTCCACGTACCCTCG 60.081 63.158 0.00 0.00 0.00 4.63
2826 9420 1.529010 TGTGTCCACGTACCCTCGT 60.529 57.895 0.00 0.00 45.10 4.18
2827 9421 0.250684 TGTGTCCACGTACCCTCGTA 60.251 55.000 0.00 0.00 42.27 3.43
2828 9422 0.449388 GTGTCCACGTACCCTCGTAG 59.551 60.000 0.00 0.00 42.27 3.51
2829 9423 0.324614 TGTCCACGTACCCTCGTAGA 59.675 55.000 0.00 0.00 42.27 2.59
2830 9424 0.729690 GTCCACGTACCCTCGTAGAC 59.270 60.000 0.00 2.79 42.50 2.59
2831 9425 0.392998 TCCACGTACCCTCGTAGACC 60.393 60.000 0.00 0.00 42.27 3.85
2832 9426 1.709147 CCACGTACCCTCGTAGACCG 61.709 65.000 0.00 0.00 42.27 4.79
2833 9427 0.740868 CACGTACCCTCGTAGACCGA 60.741 60.000 0.00 0.00 45.00 4.69
2834 9428 0.036388 ACGTACCCTCGTAGACCGAA 60.036 55.000 0.00 0.00 46.75 4.30
2835 9429 1.086696 CGTACCCTCGTAGACCGAAA 58.913 55.000 0.00 0.00 46.75 3.46
2836 9430 1.063174 CGTACCCTCGTAGACCGAAAG 59.937 57.143 0.00 0.00 46.75 2.62
2837 9431 1.098050 TACCCTCGTAGACCGAAAGC 58.902 55.000 0.00 0.00 46.75 3.51
2838 9432 1.226603 CCCTCGTAGACCGAAAGCG 60.227 63.158 0.00 0.00 46.75 4.68
2865 9459 4.394099 GTTTACTTAACGCGGTTGATGT 57.606 40.909 12.47 0.18 0.00 3.06
2866 9460 5.514059 GTTTACTTAACGCGGTTGATGTA 57.486 39.130 12.47 0.00 0.00 2.29
2867 9461 5.544621 GTTTACTTAACGCGGTTGATGTAG 58.455 41.667 12.47 0.00 0.00 2.74
2868 9462 3.308438 ACTTAACGCGGTTGATGTAGT 57.692 42.857 12.47 0.00 0.00 2.73
2869 9463 3.248266 ACTTAACGCGGTTGATGTAGTC 58.752 45.455 12.47 0.00 0.00 2.59
2870 9464 1.898938 TAACGCGGTTGATGTAGTCG 58.101 50.000 12.47 0.00 0.00 4.18
2871 9465 0.241749 AACGCGGTTGATGTAGTCGA 59.758 50.000 12.47 0.00 0.00 4.20
2872 9466 0.179171 ACGCGGTTGATGTAGTCGAG 60.179 55.000 12.47 0.00 0.00 4.04
2873 9467 1.472276 CGCGGTTGATGTAGTCGAGC 61.472 60.000 0.00 0.00 35.73 5.03
2874 9468 0.457853 GCGGTTGATGTAGTCGAGCA 60.458 55.000 0.00 0.00 38.41 4.26
2875 9469 1.802880 GCGGTTGATGTAGTCGAGCAT 60.803 52.381 0.00 0.00 38.41 3.79
2876 9470 2.120232 CGGTTGATGTAGTCGAGCATC 58.880 52.381 14.19 14.19 38.41 3.91
2877 9471 2.223595 CGGTTGATGTAGTCGAGCATCT 60.224 50.000 18.97 3.02 41.33 2.90
2878 9472 3.735208 CGGTTGATGTAGTCGAGCATCTT 60.735 47.826 18.97 0.00 41.33 2.40
2879 9473 3.799420 GGTTGATGTAGTCGAGCATCTTC 59.201 47.826 18.97 13.57 41.33 2.87
2880 9474 4.440802 GGTTGATGTAGTCGAGCATCTTCT 60.441 45.833 18.97 1.46 41.33 2.85
2881 9475 4.560136 TGATGTAGTCGAGCATCTTCTC 57.440 45.455 18.97 2.39 41.33 2.87
2891 9485 4.775440 GAGCATCTTCTCGATTCAACTG 57.225 45.455 0.00 0.00 0.00 3.16
2892 9486 4.428209 GAGCATCTTCTCGATTCAACTGA 58.572 43.478 0.00 0.00 0.00 3.41
2893 9487 5.021033 AGCATCTTCTCGATTCAACTGAT 57.979 39.130 0.00 0.00 0.00 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.463431 TGAAGCTAGGGACAAAAATAACCTAA 58.537 34.615 0.00 0.00 33.71 2.69
1 2 7.023171 TGAAGCTAGGGACAAAAATAACCTA 57.977 36.000 0.00 0.00 32.87 3.08
7 8 9.512588 CTCATATATGAAGCTAGGGACAAAAAT 57.487 33.333 16.08 0.00 36.18 1.82
8 9 8.713971 TCTCATATATGAAGCTAGGGACAAAAA 58.286 33.333 16.08 0.00 36.18 1.94
10 11 7.855784 TCTCATATATGAAGCTAGGGACAAA 57.144 36.000 16.08 0.00 36.18 2.83
11 12 8.316946 CAATCTCATATATGAAGCTAGGGACAA 58.683 37.037 16.08 0.00 36.18 3.18
12 13 7.675619 TCAATCTCATATATGAAGCTAGGGACA 59.324 37.037 16.08 0.00 36.18 4.02
13 14 8.072321 TCAATCTCATATATGAAGCTAGGGAC 57.928 38.462 16.08 0.00 36.18 4.46
14 15 8.670521 TTCAATCTCATATATGAAGCTAGGGA 57.329 34.615 16.08 8.60 36.18 4.20
15 16 9.902684 ATTTCAATCTCATATATGAAGCTAGGG 57.097 33.333 16.08 3.58 36.18 3.53
33 34 2.643551 TCGCCCTTGGAGATTTCAATC 58.356 47.619 0.00 0.00 35.64 2.67
34 35 2.806945 TCGCCCTTGGAGATTTCAAT 57.193 45.000 0.00 0.00 0.00 2.57
35 36 2.643551 GATCGCCCTTGGAGATTTCAA 58.356 47.619 0.84 0.00 42.05 2.69
36 37 1.134098 GGATCGCCCTTGGAGATTTCA 60.134 52.381 0.84 0.00 42.05 2.69
37 38 1.134098 TGGATCGCCCTTGGAGATTTC 60.134 52.381 0.84 0.00 42.05 2.17
38 39 0.918983 TGGATCGCCCTTGGAGATTT 59.081 50.000 0.84 0.00 42.05 2.17
39 40 0.471617 CTGGATCGCCCTTGGAGATT 59.528 55.000 0.84 0.00 42.05 2.40
40 41 1.414061 CCTGGATCGCCCTTGGAGAT 61.414 60.000 0.00 0.00 44.53 2.75
42 43 2.507944 CCTGGATCGCCCTTGGAG 59.492 66.667 0.00 0.00 35.38 3.86
45 46 3.089874 TCCCCTGGATCGCCCTTG 61.090 66.667 0.00 0.00 35.38 3.61
46 47 2.770048 CTCCCCTGGATCGCCCTT 60.770 66.667 0.00 0.00 35.38 3.95
52 53 1.759881 CATCAGCCTCCCCTGGATC 59.240 63.158 0.00 0.00 33.64 3.36
53 54 2.459086 GCATCAGCCTCCCCTGGAT 61.459 63.158 0.00 0.00 33.64 3.41
57 58 3.095163 CCTGCATCAGCCTCCCCT 61.095 66.667 0.00 0.00 41.13 4.79
58 59 4.201122 CCCTGCATCAGCCTCCCC 62.201 72.222 0.00 0.00 41.13 4.81
59 60 4.201122 CCCCTGCATCAGCCTCCC 62.201 72.222 0.00 0.00 41.13 4.30
60 61 4.891037 GCCCCTGCATCAGCCTCC 62.891 72.222 0.00 0.00 41.13 4.30
61 62 4.119363 TGCCCCTGCATCAGCCTC 62.119 66.667 0.00 0.00 44.23 4.70
70 71 2.898920 TTATGCTCTGCTGCCCCTGC 62.899 60.000 0.00 0.00 38.26 4.85
71 72 0.178998 ATTATGCTCTGCTGCCCCTG 60.179 55.000 0.00 0.00 0.00 4.45
72 73 0.554792 AATTATGCTCTGCTGCCCCT 59.445 50.000 0.00 0.00 0.00 4.79
73 74 0.957362 GAATTATGCTCTGCTGCCCC 59.043 55.000 0.00 0.00 0.00 5.80
74 75 1.607628 CTGAATTATGCTCTGCTGCCC 59.392 52.381 0.00 0.00 0.00 5.36
75 76 1.001597 GCTGAATTATGCTCTGCTGCC 60.002 52.381 0.00 0.00 35.53 4.85
76 77 1.948145 AGCTGAATTATGCTCTGCTGC 59.052 47.619 3.91 0.00 43.81 5.25
77 78 4.629092 TCTAGCTGAATTATGCTCTGCTG 58.371 43.478 12.60 5.31 44.73 4.41
78 79 4.952071 TCTAGCTGAATTATGCTCTGCT 57.048 40.909 7.79 8.86 46.18 4.24
79 80 5.049543 CCTTTCTAGCTGAATTATGCTCTGC 60.050 44.000 7.79 0.00 40.35 4.26
80 81 6.286758 TCCTTTCTAGCTGAATTATGCTCTG 58.713 40.000 7.79 4.15 40.35 3.35
81 82 6.491714 TCCTTTCTAGCTGAATTATGCTCT 57.508 37.500 7.79 0.00 40.35 4.09
82 83 7.661027 AGAATCCTTTCTAGCTGAATTATGCTC 59.339 37.037 7.79 0.00 40.47 4.26
83 84 7.516452 AGAATCCTTTCTAGCTGAATTATGCT 58.484 34.615 0.00 9.23 40.47 3.79
84 85 7.742556 AGAATCCTTTCTAGCTGAATTATGC 57.257 36.000 0.00 0.00 40.47 3.14
85 86 9.947669 CAAAGAATCCTTTCTAGCTGAATTATG 57.052 33.333 0.00 0.00 41.42 1.90
87 88 9.388506 CTCAAAGAATCCTTTCTAGCTGAATTA 57.611 33.333 0.00 0.00 41.42 1.40
88 89 7.338957 CCTCAAAGAATCCTTTCTAGCTGAATT 59.661 37.037 0.00 0.00 41.42 2.17
90 91 6.176183 CCTCAAAGAATCCTTTCTAGCTGAA 58.824 40.000 0.00 0.00 41.42 3.02
91 92 5.738909 CCTCAAAGAATCCTTTCTAGCTGA 58.261 41.667 0.00 0.00 41.42 4.26
92 93 4.335037 GCCTCAAAGAATCCTTTCTAGCTG 59.665 45.833 0.00 0.00 41.42 4.24
93 94 4.522114 GCCTCAAAGAATCCTTTCTAGCT 58.478 43.478 0.00 0.00 41.42 3.32
94 95 3.629855 GGCCTCAAAGAATCCTTTCTAGC 59.370 47.826 0.00 0.00 41.42 3.42
95 96 3.873952 CGGCCTCAAAGAATCCTTTCTAG 59.126 47.826 0.00 0.00 41.42 2.43
97 98 2.040412 ACGGCCTCAAAGAATCCTTTCT 59.960 45.455 0.00 0.00 44.20 2.52
99 100 2.437413 GACGGCCTCAAAGAATCCTTT 58.563 47.619 0.00 0.00 42.98 3.11
102 103 0.391263 ACGACGGCCTCAAAGAATCC 60.391 55.000 0.00 0.00 0.00 3.01
105 106 1.005394 GGACGACGGCCTCAAAGAA 60.005 57.895 14.07 0.00 0.00 2.52
106 107 2.654877 GGACGACGGCCTCAAAGA 59.345 61.111 14.07 0.00 0.00 2.52
107 108 2.809601 CGGACGACGGCCTCAAAG 60.810 66.667 19.62 0.00 39.42 2.77
117 118 1.427592 CTAGGAGGACGACGGACGAC 61.428 65.000 6.90 0.00 45.77 4.34
118 119 1.153489 CTAGGAGGACGACGGACGA 60.153 63.158 6.90 0.00 45.77 4.20
120 121 0.392193 TGACTAGGAGGACGACGGAC 60.392 60.000 0.00 0.00 0.00 4.79
121 122 0.545171 ATGACTAGGAGGACGACGGA 59.455 55.000 0.00 0.00 0.00 4.69
122 123 0.945813 GATGACTAGGAGGACGACGG 59.054 60.000 0.00 0.00 0.00 4.79
123 124 0.945813 GGATGACTAGGAGGACGACG 59.054 60.000 0.00 0.00 0.00 5.12
124 125 2.054232 TGGATGACTAGGAGGACGAC 57.946 55.000 0.00 0.00 0.00 4.34
126 127 2.959030 TGATTGGATGACTAGGAGGACG 59.041 50.000 0.00 0.00 0.00 4.79
128 129 3.994317 TGTGATTGGATGACTAGGAGGA 58.006 45.455 0.00 0.00 0.00 3.71
129 130 4.102210 ACATGTGATTGGATGACTAGGAGG 59.898 45.833 0.00 0.00 0.00 4.30
131 132 5.430886 CAACATGTGATTGGATGACTAGGA 58.569 41.667 0.00 0.00 0.00 2.94
132 133 5.746307 CAACATGTGATTGGATGACTAGG 57.254 43.478 0.00 0.00 0.00 3.02
170 171 7.512297 CAACAAATAACACAATTCAATGAGCC 58.488 34.615 0.00 0.00 0.00 4.70
212 213 4.082300 AGCAACAAATCACACAGTTCAACA 60.082 37.500 0.00 0.00 0.00 3.33
215 216 5.356751 AGTTAGCAACAAATCACACAGTTCA 59.643 36.000 0.00 0.00 0.00 3.18
216 217 5.821204 AGTTAGCAACAAATCACACAGTTC 58.179 37.500 0.00 0.00 0.00 3.01
217 218 5.835113 AGTTAGCAACAAATCACACAGTT 57.165 34.783 0.00 0.00 0.00 3.16
218 219 6.545504 CTAGTTAGCAACAAATCACACAGT 57.454 37.500 0.00 0.00 0.00 3.55
234 235 2.882927 TACGGGCACATGCTAGTTAG 57.117 50.000 3.48 0.00 41.70 2.34
235 236 3.830744 ATTACGGGCACATGCTAGTTA 57.169 42.857 3.48 0.00 41.70 2.24
236 237 2.710096 ATTACGGGCACATGCTAGTT 57.290 45.000 3.48 0.00 41.70 2.24
239 240 9.537192 GTATTTATATATTACGGGCACATGCTA 57.463 33.333 3.48 0.00 41.70 3.49
240 241 7.223971 CGTATTTATATATTACGGGCACATGCT 59.776 37.037 13.83 0.00 41.70 3.79
241 242 7.342194 CGTATTTATATATTACGGGCACATGC 58.658 38.462 13.83 0.00 41.14 4.06
242 243 7.010645 TGCGTATTTATATATTACGGGCACATG 59.989 37.037 19.30 0.00 35.04 3.21
244 245 6.396450 TGCGTATTTATATATTACGGGCACA 58.604 36.000 19.30 10.87 35.04 4.57
245 246 6.890663 TGCGTATTTATATATTACGGGCAC 57.109 37.500 19.30 9.24 35.04 5.01
284 285 9.838339 AGTTAGTGGGAATCAACTATTTAGATG 57.162 33.333 0.00 0.00 29.67 2.90
371 380 5.657826 AATTGTGGTATGCATGTGCTAAA 57.342 34.783 10.16 0.00 42.66 1.85
372 381 5.657826 AAATTGTGGTATGCATGTGCTAA 57.342 34.783 10.16 0.00 42.66 3.09
412 421 4.917385 AGTATGCATGTAAGGTTGAACCA 58.083 39.130 17.83 0.00 41.95 3.67
426 435 4.541973 TGTGTGAACAGAGAGTATGCAT 57.458 40.909 3.79 3.79 0.00 3.96
432 441 7.445121 TGAAGATAATTGTGTGAACAGAGAGT 58.555 34.615 0.00 0.00 0.00 3.24
529 538 4.090057 GCTTCGCGGGTTGCTGAC 62.090 66.667 6.13 0.00 43.27 3.51
530 539 4.617520 TGCTTCGCGGGTTGCTGA 62.618 61.111 6.13 0.00 43.27 4.26
568 577 3.380637 GCATCTCTGTCGGTCCTTTAGTA 59.619 47.826 0.00 0.00 0.00 1.82
612 621 4.021456 GGTTCAGGACCCATTTTAAACAGG 60.021 45.833 0.00 0.00 43.06 4.00
722 731 5.064325 GCTGGTAAGACGTCCGAATATTTTT 59.936 40.000 13.01 0.00 0.00 1.94
723 732 4.569564 GCTGGTAAGACGTCCGAATATTTT 59.430 41.667 13.01 0.00 0.00 1.82
792 801 6.463331 GGACGGGATAACATACTTAACATGGA 60.463 42.308 0.00 0.00 0.00 3.41
801 810 3.583228 TCCATGGACGGGATAACATACT 58.417 45.455 11.44 0.00 0.00 2.12
804 813 3.754965 CATTCCATGGACGGGATAACAT 58.245 45.455 15.91 0.00 33.63 2.71
818 827 3.964031 GACTCTACTCCACTCCATTCCAT 59.036 47.826 0.00 0.00 0.00 3.41
819 828 3.245622 TGACTCTACTCCACTCCATTCCA 60.246 47.826 0.00 0.00 0.00 3.53
820 829 3.366396 TGACTCTACTCCACTCCATTCC 58.634 50.000 0.00 0.00 0.00 3.01
821 830 4.274147 TCTGACTCTACTCCACTCCATTC 58.726 47.826 0.00 0.00 0.00 2.67
830 839 2.297701 CAGGAGCTCTGACTCTACTCC 58.702 57.143 14.64 0.00 46.18 3.85
1055 4682 4.404654 CAAGGAAGGTTGCGGCGC 62.405 66.667 27.44 27.44 0.00 6.53
1378 5017 0.833287 AGCATGTAGGCGTTCCAGAT 59.167 50.000 0.00 0.00 39.27 2.90
1446 5085 1.476488 TCGATGAAGAAGTCGATGCCA 59.524 47.619 0.00 0.00 41.44 4.92
1509 5163 3.565902 GGAAGTCCTTGTTGAAGTTCCAG 59.434 47.826 0.00 0.00 34.30 3.86
2026 8564 6.936279 CCTTCACAGAGGTCTCACTTTATTA 58.064 40.000 0.55 0.00 31.89 0.98
2062 8600 5.943416 AGATAACAAACACGGAAATCCATCA 59.057 36.000 0.00 0.00 35.14 3.07
2079 8617 5.330455 AGAAAGTGATCGAGCAGATAACA 57.670 39.130 2.20 0.00 42.19 2.41
2109 8647 2.604614 GGCGTGTGAACTCATTGGAAAC 60.605 50.000 0.00 0.00 0.00 2.78
2171 8710 2.234896 TACTCCCGGACACCAACATA 57.765 50.000 0.73 0.00 0.00 2.29
2204 8744 3.069289 TGCAGTTGCTCTAAGTGTGATG 58.931 45.455 5.62 0.00 41.00 3.07
2205 8745 3.407424 TGCAGTTGCTCTAAGTGTGAT 57.593 42.857 5.62 0.00 41.00 3.06
2206 8746 2.872245 GTTGCAGTTGCTCTAAGTGTGA 59.128 45.455 5.62 0.00 41.00 3.58
2207 8747 2.348872 CGTTGCAGTTGCTCTAAGTGTG 60.349 50.000 5.62 0.00 41.00 3.82
2208 8748 1.867233 CGTTGCAGTTGCTCTAAGTGT 59.133 47.619 5.62 0.00 41.00 3.55
2209 8749 1.867233 ACGTTGCAGTTGCTCTAAGTG 59.133 47.619 5.62 0.00 41.68 3.16
2210 8750 1.867233 CACGTTGCAGTTGCTCTAAGT 59.133 47.619 5.62 0.00 42.66 2.24
2229 8769 4.973055 CGTCCGTTTGGGTCGGCA 62.973 66.667 0.00 0.00 46.49 5.69
2290 8842 1.053424 TCTAAAACAGGGCGGACACT 58.947 50.000 0.00 0.00 0.00 3.55
2292 8844 2.871096 AATCTAAAACAGGGCGGACA 57.129 45.000 0.00 0.00 0.00 4.02
2315 8867 2.616330 CGTTGAGTGCATTGCCGGT 61.616 57.895 1.90 0.00 0.00 5.28
2316 8868 2.176546 CGTTGAGTGCATTGCCGG 59.823 61.111 6.12 0.00 0.00 6.13
2322 8874 2.049526 TCGACGCGTTGAGTGCAT 60.050 55.556 25.09 0.00 0.00 3.96
2326 8878 0.039437 AATGAGTCGACGCGTTGAGT 60.039 50.000 31.96 31.96 0.00 3.41
2368 8921 0.931005 CTATGGCGGCGAGTCTTTTC 59.069 55.000 12.98 0.00 0.00 2.29
2374 8931 0.037882 CATGATCTATGGCGGCGAGT 60.038 55.000 12.98 0.00 32.95 4.18
2376 8933 1.374631 GCATGATCTATGGCGGCGA 60.375 57.895 12.98 0.00 37.26 5.54
2413 8970 0.109504 TGTTATTTTGAAGCCGGCGC 60.110 50.000 23.20 18.21 0.00 6.53
2440 9029 1.796151 CGAGTGCGCCAACATGAAT 59.204 52.632 4.18 0.00 0.00 2.57
2497 9089 0.318784 GCGTGGTCGAACTCAAGTCT 60.319 55.000 0.33 0.00 39.71 3.24
2526 9119 3.635191 TGCTGGCATGACCACGGA 61.635 61.111 0.00 0.00 46.36 4.69
2618 9212 1.428448 CGTGGTTCGAGAAGATGCAA 58.572 50.000 0.00 0.00 42.86 4.08
2642 9236 0.176219 ACACCGTGTCGTCAAGGAAA 59.824 50.000 19.90 0.00 44.02 3.13
2681 9275 1.607071 CATGATGACCGGGGTGGAA 59.393 57.895 6.32 0.00 42.00 3.53
2712 9306 4.830826 ACGTTTCCCAACAGAAAGAATC 57.169 40.909 0.00 0.00 36.45 2.52
2713 9307 4.215613 GCTACGTTTCCCAACAGAAAGAAT 59.784 41.667 0.00 0.00 36.45 2.40
2721 9315 0.878416 GCATGCTACGTTTCCCAACA 59.122 50.000 11.37 0.00 32.54 3.33
2722 9316 0.878416 TGCATGCTACGTTTCCCAAC 59.122 50.000 20.33 0.00 0.00 3.77
2723 9317 1.610363 TTGCATGCTACGTTTCCCAA 58.390 45.000 20.33 0.00 0.00 4.12
2724 9318 1.832883 ATTGCATGCTACGTTTCCCA 58.167 45.000 20.33 0.00 0.00 4.37
2725 9319 2.939460 AATTGCATGCTACGTTTCCC 57.061 45.000 20.33 0.00 0.00 3.97
2726 9320 6.698359 TTTAAAATTGCATGCTACGTTTCC 57.302 33.333 20.33 0.00 0.00 3.13
2727 9321 9.592720 AATTTTTAAAATTGCATGCTACGTTTC 57.407 25.926 20.33 0.00 0.00 2.78
2728 9322 9.592720 GAATTTTTAAAATTGCATGCTACGTTT 57.407 25.926 20.33 16.49 0.00 3.60
2729 9323 8.227119 GGAATTTTTAAAATTGCATGCTACGTT 58.773 29.630 23.22 11.27 0.00 3.99
2730 9324 7.602265 AGGAATTTTTAAAATTGCATGCTACGT 59.398 29.630 27.44 9.24 31.49 3.57
2731 9325 7.962917 AGGAATTTTTAAAATTGCATGCTACG 58.037 30.769 27.44 0.00 31.49 3.51
2734 9328 9.669887 TCATAGGAATTTTTAAAATTGCATGCT 57.330 25.926 27.44 14.90 31.49 3.79
2741 9335 9.868277 TGCGTGATCATAGGAATTTTTAAAATT 57.132 25.926 14.56 14.56 0.00 1.82
2742 9336 9.868277 TTGCGTGATCATAGGAATTTTTAAAAT 57.132 25.926 0.00 0.00 0.00 1.82
2743 9337 9.352784 CTTGCGTGATCATAGGAATTTTTAAAA 57.647 29.630 0.00 0.00 0.00 1.52
2744 9338 8.735315 TCTTGCGTGATCATAGGAATTTTTAAA 58.265 29.630 0.00 0.00 0.00 1.52
2745 9339 8.275015 TCTTGCGTGATCATAGGAATTTTTAA 57.725 30.769 0.00 0.00 0.00 1.52
2746 9340 7.857734 TCTTGCGTGATCATAGGAATTTTTA 57.142 32.000 0.00 0.00 0.00 1.52
2747 9341 6.757897 TCTTGCGTGATCATAGGAATTTTT 57.242 33.333 0.00 0.00 0.00 1.94
2748 9342 6.769822 AGATCTTGCGTGATCATAGGAATTTT 59.230 34.615 17.28 0.00 43.76 1.82
2749 9343 6.294473 AGATCTTGCGTGATCATAGGAATTT 58.706 36.000 17.28 0.00 43.76 1.82
2750 9344 5.862845 AGATCTTGCGTGATCATAGGAATT 58.137 37.500 17.28 0.00 43.76 2.17
2751 9345 5.480642 AGATCTTGCGTGATCATAGGAAT 57.519 39.130 17.28 0.00 43.76 3.01
2752 9346 4.944619 AGATCTTGCGTGATCATAGGAA 57.055 40.909 17.28 3.31 43.76 3.36
2753 9347 5.948758 AGATAGATCTTGCGTGATCATAGGA 59.051 40.000 17.28 0.00 43.76 2.94
2754 9348 6.206395 AGATAGATCTTGCGTGATCATAGG 57.794 41.667 17.28 0.00 43.76 2.57
2755 9349 7.281999 TCCTAGATAGATCTTGCGTGATCATAG 59.718 40.741 17.28 13.12 43.76 2.23
2756 9350 7.112779 TCCTAGATAGATCTTGCGTGATCATA 58.887 38.462 17.28 9.45 43.76 2.15
2757 9351 5.948758 TCCTAGATAGATCTTGCGTGATCAT 59.051 40.000 17.28 10.49 43.76 2.45
2758 9352 5.316987 TCCTAGATAGATCTTGCGTGATCA 58.683 41.667 17.28 0.00 43.76 2.92
2759 9353 5.888691 TCCTAGATAGATCTTGCGTGATC 57.111 43.478 0.00 9.82 42.18 2.92
2760 9354 6.656632 TTTCCTAGATAGATCTTGCGTGAT 57.343 37.500 0.00 0.00 38.32 3.06
2761 9355 6.450545 CATTTCCTAGATAGATCTTGCGTGA 58.549 40.000 0.00 0.00 38.32 4.35
2762 9356 5.119898 GCATTTCCTAGATAGATCTTGCGTG 59.880 44.000 0.00 0.00 38.32 5.34
2763 9357 5.221521 TGCATTTCCTAGATAGATCTTGCGT 60.222 40.000 0.00 0.00 36.48 5.24
2764 9358 5.233225 TGCATTTCCTAGATAGATCTTGCG 58.767 41.667 0.00 0.00 36.48 4.85
2765 9359 7.011295 GCTATGCATTTCCTAGATAGATCTTGC 59.989 40.741 3.54 0.69 38.32 4.01
2766 9360 8.039538 TGCTATGCATTTCCTAGATAGATCTTG 58.960 37.037 3.54 0.00 34.23 3.02
2767 9361 8.143673 TGCTATGCATTTCCTAGATAGATCTT 57.856 34.615 3.54 0.00 34.23 2.40
2768 9362 7.730672 TGCTATGCATTTCCTAGATAGATCT 57.269 36.000 3.54 0.00 35.74 2.75
2769 9363 8.828644 CATTGCTATGCATTTCCTAGATAGATC 58.171 37.037 3.54 0.00 38.76 2.75
2770 9364 8.546322 TCATTGCTATGCATTTCCTAGATAGAT 58.454 33.333 3.54 0.00 38.76 1.98
2771 9365 7.910584 TCATTGCTATGCATTTCCTAGATAGA 58.089 34.615 3.54 0.00 38.76 1.98
2772 9366 8.039538 TCTCATTGCTATGCATTTCCTAGATAG 58.960 37.037 3.54 0.00 38.76 2.08
2773 9367 7.910584 TCTCATTGCTATGCATTTCCTAGATA 58.089 34.615 3.54 0.00 38.76 1.98
2774 9368 6.776744 TCTCATTGCTATGCATTTCCTAGAT 58.223 36.000 3.54 0.00 38.76 1.98
2775 9369 6.178607 TCTCATTGCTATGCATTTCCTAGA 57.821 37.500 3.54 0.00 38.76 2.43
2776 9370 5.411977 CCTCTCATTGCTATGCATTTCCTAG 59.588 44.000 3.54 0.00 38.76 3.02
2777 9371 5.311265 CCTCTCATTGCTATGCATTTCCTA 58.689 41.667 3.54 0.00 38.76 2.94
2778 9372 4.142790 CCTCTCATTGCTATGCATTTCCT 58.857 43.478 3.54 0.00 38.76 3.36
2779 9373 3.255149 CCCTCTCATTGCTATGCATTTCC 59.745 47.826 3.54 0.00 38.76 3.13
2780 9374 3.255149 CCCCTCTCATTGCTATGCATTTC 59.745 47.826 3.54 0.00 38.76 2.17
2781 9375 3.228453 CCCCTCTCATTGCTATGCATTT 58.772 45.455 3.54 0.00 38.76 2.32
2782 9376 2.490351 CCCCCTCTCATTGCTATGCATT 60.490 50.000 3.54 0.00 38.76 3.56
2783 9377 1.075050 CCCCCTCTCATTGCTATGCAT 59.925 52.381 3.79 3.79 38.76 3.96
2784 9378 0.475475 CCCCCTCTCATTGCTATGCA 59.525 55.000 3.00 0.00 36.47 3.96
2785 9379 0.767375 TCCCCCTCTCATTGCTATGC 59.233 55.000 3.00 0.00 0.00 3.14
2786 9380 2.302445 CTCTCCCCCTCTCATTGCTATG 59.698 54.545 1.30 1.30 0.00 2.23
2787 9381 2.090267 ACTCTCCCCCTCTCATTGCTAT 60.090 50.000 0.00 0.00 0.00 2.97
2788 9382 1.292242 ACTCTCCCCCTCTCATTGCTA 59.708 52.381 0.00 0.00 0.00 3.49
2789 9383 0.043940 ACTCTCCCCCTCTCATTGCT 59.956 55.000 0.00 0.00 0.00 3.91
2790 9384 0.179936 CACTCTCCCCCTCTCATTGC 59.820 60.000 0.00 0.00 0.00 3.56
2791 9385 1.209019 CACACTCTCCCCCTCTCATTG 59.791 57.143 0.00 0.00 0.00 2.82
2792 9386 1.203364 ACACACTCTCCCCCTCTCATT 60.203 52.381 0.00 0.00 0.00 2.57
2793 9387 0.415429 ACACACTCTCCCCCTCTCAT 59.585 55.000 0.00 0.00 0.00 2.90
2794 9388 0.251832 GACACACTCTCCCCCTCTCA 60.252 60.000 0.00 0.00 0.00 3.27
2795 9389 0.973496 GGACACACTCTCCCCCTCTC 60.973 65.000 0.00 0.00 0.00 3.20
2796 9390 1.079438 GGACACACTCTCCCCCTCT 59.921 63.158 0.00 0.00 0.00 3.69
2797 9391 1.229209 TGGACACACTCTCCCCCTC 60.229 63.158 0.00 0.00 0.00 4.30
2798 9392 1.536662 GTGGACACACTCTCCCCCT 60.537 63.158 0.00 0.00 44.29 4.79
2799 9393 2.943978 CGTGGACACACTCTCCCCC 61.944 68.421 3.12 0.00 45.50 5.40
2800 9394 0.896940 TACGTGGACACACTCTCCCC 60.897 60.000 0.00 0.00 45.50 4.81
2801 9395 0.243095 GTACGTGGACACACTCTCCC 59.757 60.000 0.00 0.00 45.50 4.30
2802 9396 0.243095 GGTACGTGGACACACTCTCC 59.757 60.000 0.00 0.00 45.50 3.71
2803 9397 0.243095 GGGTACGTGGACACACTCTC 59.757 60.000 0.00 0.00 45.50 3.20
2804 9398 0.178970 AGGGTACGTGGACACACTCT 60.179 55.000 0.00 0.00 45.50 3.24
2805 9399 0.243095 GAGGGTACGTGGACACACTC 59.757 60.000 2.84 2.84 45.50 3.51
2806 9400 1.521450 CGAGGGTACGTGGACACACT 61.521 60.000 0.00 0.00 45.50 3.55
2807 9401 1.080974 CGAGGGTACGTGGACACAC 60.081 63.158 0.00 0.00 44.23 3.82
2808 9402 0.250684 TACGAGGGTACGTGGACACA 60.251 55.000 0.00 0.00 46.02 3.72
2809 9403 0.449388 CTACGAGGGTACGTGGACAC 59.551 60.000 0.00 0.00 44.98 3.67
2810 9404 0.324614 TCTACGAGGGTACGTGGACA 59.675 55.000 0.00 0.00 45.53 4.02
2811 9405 3.159298 TCTACGAGGGTACGTGGAC 57.841 57.895 0.00 0.00 45.53 4.02
2813 9407 2.101700 GGTCTACGAGGGTACGTGG 58.898 63.158 0.00 0.00 46.02 4.94
2831 9425 0.788391 AGTAAACGCTTCCGCTTTCG 59.212 50.000 0.00 0.00 38.22 3.46
2832 9426 2.963498 AAGTAAACGCTTCCGCTTTC 57.037 45.000 0.00 0.00 38.22 2.62
2833 9427 4.137849 GTTAAGTAAACGCTTCCGCTTT 57.862 40.909 0.00 0.00 38.22 3.51
2834 9428 3.800929 GTTAAGTAAACGCTTCCGCTT 57.199 42.857 0.00 0.00 38.22 4.68
2844 9438 4.394099 ACATCAACCGCGTTAAGTAAAC 57.606 40.909 4.92 0.00 34.52 2.01
2845 9439 5.229423 ACTACATCAACCGCGTTAAGTAAA 58.771 37.500 4.92 0.00 0.00 2.01
2846 9440 4.808558 ACTACATCAACCGCGTTAAGTAA 58.191 39.130 4.92 0.00 0.00 2.24
2847 9441 4.414852 GACTACATCAACCGCGTTAAGTA 58.585 43.478 4.92 0.00 0.00 2.24
2848 9442 3.248266 GACTACATCAACCGCGTTAAGT 58.752 45.455 4.92 0.00 0.00 2.24
2849 9443 2.278094 CGACTACATCAACCGCGTTAAG 59.722 50.000 4.92 0.00 0.00 1.85
2850 9444 2.095314 TCGACTACATCAACCGCGTTAA 60.095 45.455 4.92 0.00 0.00 2.01
2851 9445 1.468127 TCGACTACATCAACCGCGTTA 59.532 47.619 4.92 0.00 0.00 3.18
2852 9446 0.241749 TCGACTACATCAACCGCGTT 59.758 50.000 4.92 0.00 0.00 4.84
2853 9447 0.179171 CTCGACTACATCAACCGCGT 60.179 55.000 4.92 0.00 0.00 6.01
2854 9448 1.472276 GCTCGACTACATCAACCGCG 61.472 60.000 0.00 0.00 0.00 6.46
2855 9449 0.457853 TGCTCGACTACATCAACCGC 60.458 55.000 0.00 0.00 0.00 5.68
2856 9450 2.120232 GATGCTCGACTACATCAACCG 58.880 52.381 11.56 0.00 41.86 4.44
2857 9451 3.444703 AGATGCTCGACTACATCAACC 57.555 47.619 16.48 0.00 44.16 3.77
2858 9452 4.677584 AGAAGATGCTCGACTACATCAAC 58.322 43.478 16.48 11.18 44.16 3.18
2859 9453 4.926244 GAGAAGATGCTCGACTACATCAA 58.074 43.478 16.48 0.00 44.16 2.57
2860 9454 4.560136 GAGAAGATGCTCGACTACATCA 57.440 45.455 16.48 0.00 44.16 3.07
2870 9464 4.428209 TCAGTTGAATCGAGAAGATGCTC 58.572 43.478 0.00 0.00 40.02 4.26
2871 9465 4.462508 TCAGTTGAATCGAGAAGATGCT 57.537 40.909 0.00 0.00 40.02 3.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.