Multiple sequence alignment - TraesCS4A01G173100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G173100 chr4A 100.000 4750 0 0 1 4750 440179379 440184128 0.000000e+00 8772.0
1 TraesCS4A01G173100 chr4A 92.632 95 5 2 605 699 603462432 603462340 8.290000e-28 135.0
2 TraesCS4A01G173100 chr4A 81.188 101 14 3 2870 2968 550481906 550481809 5.100000e-10 76.8
3 TraesCS4A01G173100 chr4B 94.146 3707 120 31 688 4331 192060463 192056791 0.000000e+00 5553.0
4 TraesCS4A01G173100 chr4B 87.561 611 57 10 1 604 192062619 192062021 0.000000e+00 689.0
5 TraesCS4A01G173100 chr4B 89.855 69 4 2 4684 4749 582954052 582954120 8.470000e-13 86.1
6 TraesCS4A01G173100 chr4B 92.308 52 4 0 2914 2965 69379581 69379632 1.830000e-09 75.0
7 TraesCS4A01G173100 chr4D 95.577 3301 99 19 688 3960 128169077 128165796 0.000000e+00 5243.0
8 TraesCS4A01G173100 chr4D 89.212 482 44 4 1 476 128169739 128169260 3.160000e-166 595.0
9 TraesCS4A01G173100 chr4D 89.272 261 18 3 4004 4264 128165664 128165414 7.670000e-83 318.0
10 TraesCS4A01G173100 chr4D 98.413 63 1 0 542 604 128169144 128169082 1.400000e-20 111.0
11 TraesCS4A01G173100 chr4D 81.188 101 14 3 2870 2968 47535109 47535012 5.100000e-10 76.8
12 TraesCS4A01G173100 chr7D 85.275 618 69 9 1604 2215 442793155 442793756 6.750000e-173 617.0
13 TraesCS4A01G173100 chr7D 91.667 108 8 1 585 692 85908368 85908474 1.070000e-31 148.0
14 TraesCS4A01G173100 chr6D 78.458 882 151 32 1635 2501 317854420 317853563 1.500000e-149 540.0
15 TraesCS4A01G173100 chr7B 85.771 506 68 3 1712 2215 460559364 460559867 2.520000e-147 532.0
16 TraesCS4A01G173100 chr7B 87.143 70 5 2 4684 4749 77802338 77802407 5.100000e-10 76.8
17 TraesCS4A01G173100 chr6B 78.656 848 144 32 1632 2465 506546270 506547094 3.260000e-146 529.0
18 TraesCS4A01G173100 chr6B 73.197 929 196 41 2766 3680 506547413 506548302 2.160000e-73 287.0
19 TraesCS4A01G173100 chr6B 94.565 92 5 0 600 691 716607875 716607784 4.960000e-30 143.0
20 TraesCS4A01G173100 chr5A 91.761 352 15 7 4399 4749 32946361 32946023 1.200000e-130 477.0
21 TraesCS4A01G173100 chr2A 95.977 174 6 1 4474 4647 758288928 758288756 1.010000e-71 281.0
22 TraesCS4A01G173100 chr6A 72.667 911 198 34 2784 3680 455315545 455314672 6.100000e-64 255.0
23 TraesCS4A01G173100 chr1B 94.737 95 5 0 596 690 282278118 282278212 1.070000e-31 148.0
24 TraesCS4A01G173100 chr1B 95.556 90 4 0 600 689 402103313 402103402 1.380000e-30 145.0
25 TraesCS4A01G173100 chr1B 94.565 92 4 1 604 695 57690601 57690511 1.780000e-29 141.0
26 TraesCS4A01G173100 chr1B 93.103 87 6 0 604 690 398148777 398148691 1.390000e-25 128.0
27 TraesCS4A01G173100 chr1B 91.304 69 3 2 4684 4749 426962959 426963027 1.820000e-14 91.6
28 TraesCS4A01G173100 chr1A 92.000 100 7 1 598 696 578474300 578474399 6.410000e-29 139.0
29 TraesCS4A01G173100 chr3B 92.632 95 7 0 598 692 54326013 54325919 2.310000e-28 137.0
30 TraesCS4A01G173100 chr3A 94.203 69 0 2 4684 4748 699290157 699290089 8.410000e-18 102.0
31 TraesCS4A01G173100 chr1D 78.899 109 15 7 4485 4588 382782263 382782368 3.070000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G173100 chr4A 440179379 440184128 4749 False 8772.00 8772 100.0000 1 4750 1 chr4A.!!$F1 4749
1 TraesCS4A01G173100 chr4B 192056791 192062619 5828 True 3121.00 5553 90.8535 1 4331 2 chr4B.!!$R1 4330
2 TraesCS4A01G173100 chr4D 128165414 128169739 4325 True 1566.75 5243 93.1185 1 4264 4 chr4D.!!$R2 4263
3 TraesCS4A01G173100 chr7D 442793155 442793756 601 False 617.00 617 85.2750 1604 2215 1 chr7D.!!$F2 611
4 TraesCS4A01G173100 chr6D 317853563 317854420 857 True 540.00 540 78.4580 1635 2501 1 chr6D.!!$R1 866
5 TraesCS4A01G173100 chr7B 460559364 460559867 503 False 532.00 532 85.7710 1712 2215 1 chr7B.!!$F2 503
6 TraesCS4A01G173100 chr6B 506546270 506548302 2032 False 408.00 529 75.9265 1632 3680 2 chr6B.!!$F1 2048
7 TraesCS4A01G173100 chr6A 455314672 455315545 873 True 255.00 255 72.6670 2784 3680 1 chr6A.!!$R1 896

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
217 219 0.106335 ATGAATCTCGAGCTGGCAGG 59.894 55.0 17.64 0.00 0.00 4.85 F
340 342 0.172578 TCAGCCCGTGATTACTCGTG 59.827 55.0 0.00 0.00 0.00 4.35 F
1524 3109 0.240678 TACGCACGTTACGGTGTCAT 59.759 50.0 10.20 0.00 40.08 3.06 F
2405 4024 0.809241 CGAGAAGGACATCTGCAGCC 60.809 60.0 9.47 4.17 0.00 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1319 2904 0.388134 CTCCGACCACCACTTGTACG 60.388 60.0 0.00 0.0 0.00 3.67 R
1554 3143 0.869068 TACACGCACCATGAAAACGG 59.131 50.0 0.00 0.0 0.00 4.44 R
2864 4534 0.107508 ACGAGGACGATCGGGTTAGA 60.108 55.0 20.98 0.0 46.91 2.10 R
4380 6221 0.038744 TCCTACCGAACGAGGGAGTT 59.961 55.0 7.55 0.0 40.73 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 1.078426 CGTCCCCTGTCCACAATCC 60.078 63.158 0.00 0.00 0.00 3.01
64 65 0.118144 AGCCCTTCTTGGTCTCCTCT 59.882 55.000 0.00 0.00 0.00 3.69
67 68 1.274712 CCTTCTTGGTCTCCTCTGCT 58.725 55.000 0.00 0.00 0.00 4.24
70 71 1.447489 CTTGGTCTCCTCTGCTGCG 60.447 63.158 0.00 0.00 0.00 5.18
130 132 1.534175 CGAGCTCGACAGGTATGGTTC 60.534 57.143 32.06 0.00 43.02 3.62
135 137 3.065575 GACAGGTATGGTTCTGGCG 57.934 57.895 0.00 0.00 35.47 5.69
138 140 1.995626 AGGTATGGTTCTGGCGGCT 60.996 57.895 11.43 0.00 0.00 5.52
164 166 2.903855 GATCATGGCCGCCAGTGG 60.904 66.667 18.96 4.20 36.75 4.00
205 207 2.890311 CTCTCTCGGGCACTATGAATCT 59.110 50.000 0.00 0.00 0.00 2.40
206 208 2.887783 TCTCTCGGGCACTATGAATCTC 59.112 50.000 0.00 0.00 0.00 2.75
217 219 0.106335 ATGAATCTCGAGCTGGCAGG 59.894 55.000 17.64 0.00 0.00 4.85
220 222 1.684386 AATCTCGAGCTGGCAGGAGG 61.684 60.000 17.64 0.00 0.00 4.30
232 234 0.455005 GCAGGAGGCATTGCTCTTTC 59.545 55.000 8.82 2.07 43.97 2.62
235 237 0.323725 GGAGGCATTGCTCTTTCCCA 60.324 55.000 8.82 0.00 0.00 4.37
272 274 1.402852 CGCGAGGAGAACATCAACTCA 60.403 52.381 0.00 0.00 35.17 3.41
284 286 3.434641 ACATCAACTCAGTCATCTTTGCG 59.565 43.478 0.00 0.00 0.00 4.85
334 336 4.191544 CTCAATTCTTCAGCCCGTGATTA 58.808 43.478 0.00 0.00 34.17 1.75
340 342 0.172578 TCAGCCCGTGATTACTCGTG 59.827 55.000 0.00 0.00 0.00 4.35
341 343 1.153628 AGCCCGTGATTACTCGTGC 60.154 57.895 0.00 0.00 36.86 5.34
377 379 2.035066 GGCTGGTATCAAATGTGCATCC 59.965 50.000 0.00 0.00 0.00 3.51
383 385 2.768253 TCAAATGTGCATCCTCGAGT 57.232 45.000 12.31 0.00 0.00 4.18
392 394 4.141959 TGTGCATCCTCGAGTTTCATATCA 60.142 41.667 12.31 0.00 0.00 2.15
393 395 4.811024 GTGCATCCTCGAGTTTCATATCAA 59.189 41.667 12.31 0.00 0.00 2.57
394 396 5.294306 GTGCATCCTCGAGTTTCATATCAAA 59.706 40.000 12.31 0.00 0.00 2.69
395 397 6.017605 GTGCATCCTCGAGTTTCATATCAAAT 60.018 38.462 12.31 0.00 0.00 2.32
396 398 6.017687 TGCATCCTCGAGTTTCATATCAAATG 60.018 38.462 12.31 0.00 0.00 2.32
397 399 6.017605 GCATCCTCGAGTTTCATATCAAATGT 60.018 38.462 12.31 0.00 0.00 2.71
398 400 6.908870 TCCTCGAGTTTCATATCAAATGTG 57.091 37.500 12.31 0.00 0.00 3.21
405 412 7.274033 CGAGTTTCATATCAAATGTGCATGTTT 59.726 33.333 0.00 0.00 0.00 2.83
408 415 8.928733 GTTTCATATCAAATGTGCATGTTTCTT 58.071 29.630 0.00 0.00 0.00 2.52
423 430 4.135306 TGTTTCTTGGCGGTACAATGTAA 58.865 39.130 0.00 0.00 0.00 2.41
476 502 2.887152 CACTAGTGGCCTTTCTGCTTTT 59.113 45.455 15.49 0.00 0.00 2.27
477 503 4.072131 CACTAGTGGCCTTTCTGCTTTTA 58.928 43.478 15.49 0.00 0.00 1.52
478 504 4.518970 CACTAGTGGCCTTTCTGCTTTTAA 59.481 41.667 15.49 0.00 0.00 1.52
479 505 4.519350 ACTAGTGGCCTTTCTGCTTTTAAC 59.481 41.667 3.32 0.00 0.00 2.01
480 506 3.566351 AGTGGCCTTTCTGCTTTTAACT 58.434 40.909 3.32 0.00 0.00 2.24
481 507 3.570125 AGTGGCCTTTCTGCTTTTAACTC 59.430 43.478 3.32 0.00 0.00 3.01
482 508 2.552315 TGGCCTTTCTGCTTTTAACTCG 59.448 45.455 3.32 0.00 0.00 4.18
483 509 2.095212 GGCCTTTCTGCTTTTAACTCGG 60.095 50.000 0.00 0.00 0.00 4.63
484 510 2.812011 GCCTTTCTGCTTTTAACTCGGA 59.188 45.455 0.00 0.00 0.00 4.55
485 511 3.440522 GCCTTTCTGCTTTTAACTCGGAT 59.559 43.478 0.00 0.00 0.00 4.18
486 512 4.082733 GCCTTTCTGCTTTTAACTCGGATT 60.083 41.667 0.00 0.00 0.00 3.01
487 513 5.393962 CCTTTCTGCTTTTAACTCGGATTG 58.606 41.667 0.00 0.00 0.00 2.67
488 514 5.048713 CCTTTCTGCTTTTAACTCGGATTGT 60.049 40.000 0.00 0.00 0.00 2.71
489 515 6.148811 CCTTTCTGCTTTTAACTCGGATTGTA 59.851 38.462 0.00 0.00 0.00 2.41
490 516 7.148239 CCTTTCTGCTTTTAACTCGGATTGTAT 60.148 37.037 0.00 0.00 0.00 2.29
491 517 6.903883 TCTGCTTTTAACTCGGATTGTATC 57.096 37.500 0.00 0.00 0.00 2.24
492 518 5.815740 TCTGCTTTTAACTCGGATTGTATCC 59.184 40.000 0.00 0.00 46.22 2.59
515 541 4.320494 CCAGAAACTCTGTGGAATTTTCGG 60.320 45.833 3.15 0.00 42.80 4.30
517 543 5.008613 CAGAAACTCTGTGGAATTTTCGGAA 59.991 40.000 0.00 0.00 39.58 4.30
518 544 5.239525 AGAAACTCTGTGGAATTTTCGGAAG 59.760 40.000 0.00 0.00 32.83 3.46
632 737 8.752766 TCCTTCCGTAAATTAATATAAGAGCG 57.247 34.615 0.00 0.00 0.00 5.03
633 738 8.362639 TCCTTCCGTAAATTAATATAAGAGCGT 58.637 33.333 0.00 0.00 0.00 5.07
634 739 8.985805 CCTTCCGTAAATTAATATAAGAGCGTT 58.014 33.333 0.00 0.00 0.00 4.84
652 757 9.570488 AAGAGCGTTTAGAATACTAAAGTAGTG 57.430 33.333 0.00 0.00 45.42 2.74
653 758 8.954350 AGAGCGTTTAGAATACTAAAGTAGTGA 58.046 33.333 0.00 0.00 45.42 3.41
654 759 9.733219 GAGCGTTTAGAATACTAAAGTAGTGAT 57.267 33.333 0.00 0.00 45.42 3.06
729 2308 0.957395 CTTTCATCAGCACCCGCACT 60.957 55.000 0.00 0.00 42.27 4.40
734 2313 0.391661 ATCAGCACCCGCACTTACAG 60.392 55.000 0.00 0.00 42.27 2.74
740 2319 1.736645 CCCGCACTTACAGTCCACG 60.737 63.158 0.00 0.00 0.00 4.94
829 2410 2.880963 ACAAACAAACAACCCGATGG 57.119 45.000 0.00 0.00 37.80 3.51
874 2455 4.170062 CGGCCGTGCATGCAGAAG 62.170 66.667 23.41 15.32 0.00 2.85
992 2577 1.154169 CGTACGTAGCGAGCCAACA 60.154 57.895 7.22 0.00 0.00 3.33
993 2578 0.524816 CGTACGTAGCGAGCCAACAT 60.525 55.000 7.22 0.00 0.00 2.71
994 2579 1.268184 CGTACGTAGCGAGCCAACATA 60.268 52.381 7.22 0.00 0.00 2.29
995 2580 2.382519 GTACGTAGCGAGCCAACATAG 58.617 52.381 0.00 0.00 0.00 2.23
1058 2643 1.965754 CTCCTCCTAGCCACCACAGC 61.966 65.000 0.00 0.00 0.00 4.40
1088 2673 3.438017 ATGCCTCTTCTCGAGCCGC 62.438 63.158 7.81 4.90 38.49 6.53
1518 3103 1.802715 CCAGGTACGCACGTTACGG 60.803 63.158 10.20 0.00 34.00 4.02
1519 3104 1.081242 CAGGTACGCACGTTACGGT 60.081 57.895 10.20 0.00 34.00 4.83
1520 3105 1.081242 AGGTACGCACGTTACGGTG 60.081 57.895 10.20 7.43 40.89 4.94
1521 3106 1.371635 GGTACGCACGTTACGGTGT 60.372 57.895 10.20 12.80 40.08 4.16
1522 3107 1.337110 GGTACGCACGTTACGGTGTC 61.337 60.000 10.20 5.57 40.08 3.67
1523 3108 0.660005 GTACGCACGTTACGGTGTCA 60.660 55.000 10.20 0.00 40.08 3.58
1524 3109 0.240678 TACGCACGTTACGGTGTCAT 59.759 50.000 10.20 0.00 40.08 3.06
1525 3110 1.279527 ACGCACGTTACGGTGTCATG 61.280 55.000 10.20 0.00 40.08 3.07
1526 3111 1.131826 GCACGTTACGGTGTCATGC 59.868 57.895 10.20 4.81 40.08 4.06
1527 3112 1.561717 GCACGTTACGGTGTCATGCA 61.562 55.000 10.20 0.00 40.08 3.96
1554 3143 1.569479 GGTGCCACGTCTGCTCTTTC 61.569 60.000 7.97 0.00 0.00 2.62
1555 3144 1.301716 TGCCACGTCTGCTCTTTCC 60.302 57.895 7.97 0.00 0.00 3.13
1556 3145 2.383527 GCCACGTCTGCTCTTTCCG 61.384 63.158 0.00 0.00 0.00 4.30
1557 3146 1.006102 CCACGTCTGCTCTTTCCGT 60.006 57.895 0.00 0.00 0.00 4.69
1559 3148 1.217882 CACGTCTGCTCTTTCCGTTT 58.782 50.000 0.00 0.00 0.00 3.60
1560 3149 1.597663 CACGTCTGCTCTTTCCGTTTT 59.402 47.619 0.00 0.00 0.00 2.43
1561 3150 1.865340 ACGTCTGCTCTTTCCGTTTTC 59.135 47.619 0.00 0.00 0.00 2.29
1564 3153 3.665323 CGTCTGCTCTTTCCGTTTTCATG 60.665 47.826 0.00 0.00 0.00 3.07
1936 3554 2.887568 GAGGAGCGCGACATGGTG 60.888 66.667 12.10 0.00 0.00 4.17
1975 3593 2.202932 GAGATGTGCGTCCGCCAT 60.203 61.111 9.43 11.58 41.09 4.40
2290 3909 1.371183 CGTCCAGAAGGGCAAGACA 59.629 57.895 0.00 0.00 40.51 3.41
2405 4024 0.809241 CGAGAAGGACATCTGCAGCC 60.809 60.000 9.47 4.17 0.00 4.85
2507 4126 2.668212 CCAAGAAGTTCGGCGCCA 60.668 61.111 28.98 11.20 0.00 5.69
2616 4238 2.649331 ACTACGTACACCTCACATGC 57.351 50.000 0.00 0.00 0.00 4.06
2733 4355 2.376808 AGCAAGGACGTGAAGATCTG 57.623 50.000 0.00 0.00 0.00 2.90
2737 4359 1.198713 AGGACGTGAAGATCTGGCAT 58.801 50.000 0.00 0.00 0.00 4.40
2864 4534 3.896133 ACATCGCGGCGGTATCGT 61.896 61.111 23.46 6.93 38.89 3.73
2982 4652 2.863484 TGGTGGGGAAGGTGGCAT 60.863 61.111 0.00 0.00 0.00 4.40
3243 4943 1.069596 AAGTTTTACGACGGGCCGT 59.930 52.632 34.81 34.81 45.10 5.68
3245 4945 0.532115 AGTTTTACGACGGGCCGTAT 59.468 50.000 34.29 25.08 43.42 3.06
3262 4962 2.347292 CGTATGTGCTTTATCGGTTCGC 60.347 50.000 0.00 0.00 0.00 4.70
3298 4998 2.163815 ACACCAAGTTCCGATACGAGAG 59.836 50.000 0.00 0.00 0.00 3.20
3579 5282 2.909965 TGTTTGTGAAGGCGGGCC 60.910 61.111 0.18 0.18 0.00 5.80
3736 5439 2.028112 TGTCTTTCCCCGTCAAGATCAG 60.028 50.000 0.00 0.00 31.71 2.90
3777 5480 2.561373 CTCGGTTCTTTTGCGGCC 59.439 61.111 0.00 0.00 0.00 6.13
3909 5628 9.535878 GTTCCTGTAGATTTCTCAGTTATAAGG 57.464 37.037 0.00 0.00 0.00 2.69
4045 5871 8.116753 CGTGCTTATTAAACTGAAGTTCCTATG 58.883 37.037 0.00 0.00 37.25 2.23
4068 5894 7.607615 TGAACATGGAGATGATAGATCAGAA 57.392 36.000 0.00 0.00 40.64 3.02
4094 5920 7.778185 AAGTCTACTTTTAGTTCCTCAGCTA 57.222 36.000 0.00 0.00 30.82 3.32
4168 5994 5.422970 TCCAGAAAGTAAAGTAAGGGCGATA 59.577 40.000 0.00 0.00 0.00 2.92
4177 6003 3.036091 AGTAAGGGCGATAGTTTAGGCA 58.964 45.455 0.00 0.00 39.35 4.75
4186 6012 3.602483 GATAGTTTAGGCAACGGTTCCA 58.398 45.455 0.00 0.00 40.75 3.53
4202 6028 1.052124 TCCACTTGGTGAACTCCGGT 61.052 55.000 0.00 0.00 35.23 5.28
4215 6041 2.434359 CCGGTGAGGAAACGGCTC 60.434 66.667 0.00 0.00 45.00 4.70
4224 6050 1.285950 GAAACGGCTCCCTGTTTGC 59.714 57.895 5.46 0.00 38.35 3.68
4237 6063 5.385198 TCCCTGTTTGCACTCTATTTTTCT 58.615 37.500 0.00 0.00 0.00 2.52
4281 6122 4.524328 CCTCTATTTTGTGCTCTTTGGGTT 59.476 41.667 0.00 0.00 0.00 4.11
4296 6137 1.047801 GGGTTGCCACTTTCCACATT 58.952 50.000 0.00 0.00 0.00 2.71
4300 6141 3.068873 GGTTGCCACTTTCCACATTTACA 59.931 43.478 0.00 0.00 0.00 2.41
4312 6153 9.703892 CTTTCCACATTTACAAAATCATTACCA 57.296 29.630 0.00 0.00 0.00 3.25
4316 6157 9.487790 CCACATTTACAAAATCATTACCAAGTT 57.512 29.630 0.00 0.00 0.00 2.66
4333 6174 6.207691 CCAAGTTATGGGTCAAAACCTATG 57.792 41.667 3.93 0.00 45.60 2.23
4334 6175 5.127031 CCAAGTTATGGGTCAAAACCTATGG 59.873 44.000 3.93 0.00 45.60 2.74
4335 6176 5.789574 AGTTATGGGTCAAAACCTATGGA 57.210 39.130 3.93 0.00 45.60 3.41
4336 6177 5.506708 AGTTATGGGTCAAAACCTATGGAC 58.493 41.667 3.93 3.37 45.60 4.02
4337 6178 2.483014 TGGGTCAAAACCTATGGACG 57.517 50.000 0.00 0.00 45.66 4.79
4338 6179 1.092348 GGGTCAAAACCTATGGACGC 58.908 55.000 0.00 0.00 45.66 5.19
4339 6180 1.092348 GGTCAAAACCTATGGACGCC 58.908 55.000 0.00 0.00 42.80 5.68
4340 6181 0.725117 GTCAAAACCTATGGACGCCG 59.275 55.000 0.00 0.00 0.00 6.46
4341 6182 0.609151 TCAAAACCTATGGACGCCGA 59.391 50.000 0.00 0.00 0.00 5.54
4342 6183 1.208535 TCAAAACCTATGGACGCCGAT 59.791 47.619 0.00 0.00 0.00 4.18
4343 6184 2.431419 TCAAAACCTATGGACGCCGATA 59.569 45.455 0.00 0.00 0.00 2.92
4344 6185 3.118702 TCAAAACCTATGGACGCCGATAA 60.119 43.478 0.00 0.00 0.00 1.75
4345 6186 2.521105 AACCTATGGACGCCGATAAC 57.479 50.000 0.00 0.00 0.00 1.89
4346 6187 0.313043 ACCTATGGACGCCGATAACG 59.687 55.000 0.00 0.00 39.43 3.18
4347 6188 1.007336 CCTATGGACGCCGATAACGC 61.007 60.000 0.00 0.00 38.29 4.84
4348 6189 1.334992 CTATGGACGCCGATAACGCG 61.335 60.000 3.53 3.53 41.65 6.01
4382 6223 2.979649 GGACCTCCCAGACCGAAC 59.020 66.667 0.00 0.00 34.14 3.95
4383 6224 1.609794 GGACCTCCCAGACCGAACT 60.610 63.158 0.00 0.00 34.14 3.01
4384 6225 1.605971 GGACCTCCCAGACCGAACTC 61.606 65.000 0.00 0.00 34.14 3.01
4385 6226 1.605971 GACCTCCCAGACCGAACTCC 61.606 65.000 0.00 0.00 0.00 3.85
4386 6227 2.359967 CCTCCCAGACCGAACTCCC 61.360 68.421 0.00 0.00 0.00 4.30
4387 6228 1.305381 CTCCCAGACCGAACTCCCT 60.305 63.158 0.00 0.00 0.00 4.20
4388 6229 1.305046 TCCCAGACCGAACTCCCTC 60.305 63.158 0.00 0.00 0.00 4.30
4389 6230 2.711922 CCCAGACCGAACTCCCTCG 61.712 68.421 0.00 0.00 38.58 4.63
4390 6231 1.977544 CCAGACCGAACTCCCTCGT 60.978 63.158 0.00 0.00 37.11 4.18
4391 6232 1.533469 CCAGACCGAACTCCCTCGTT 61.533 60.000 0.00 0.00 37.11 3.85
4392 6233 0.109226 CAGACCGAACTCCCTCGTTC 60.109 60.000 0.00 0.00 39.83 3.95
4398 6239 0.455005 GAACTCCCTCGTTCGGTAGG 59.545 60.000 0.00 0.00 34.59 3.18
4399 6240 0.038744 AACTCCCTCGTTCGGTAGGA 59.961 55.000 2.26 1.46 34.58 2.94
4400 6241 2.406205 CTCCCTCGTTCGGTAGGAG 58.594 63.158 9.99 9.99 38.32 3.69
4403 6244 4.651867 CTCGTTCGGTAGGAGGGA 57.348 61.111 0.00 0.00 35.57 4.20
4404 6245 3.112965 CTCGTTCGGTAGGAGGGAT 57.887 57.895 0.00 0.00 35.57 3.85
4405 6246 0.669077 CTCGTTCGGTAGGAGGGATG 59.331 60.000 0.00 0.00 35.57 3.51
4406 6247 0.256752 TCGTTCGGTAGGAGGGATGA 59.743 55.000 0.00 0.00 0.00 2.92
4407 6248 0.384669 CGTTCGGTAGGAGGGATGAC 59.615 60.000 0.00 0.00 0.00 3.06
4408 6249 1.777941 GTTCGGTAGGAGGGATGACT 58.222 55.000 0.00 0.00 0.00 3.41
4409 6250 1.682323 GTTCGGTAGGAGGGATGACTC 59.318 57.143 0.00 0.00 36.76 3.36
4416 6257 3.742983 GAGGGATGACTCCACGAAC 57.257 57.895 0.00 0.00 44.08 3.95
4417 6258 0.895530 GAGGGATGACTCCACGAACA 59.104 55.000 0.00 0.00 44.08 3.18
4418 6259 1.275291 GAGGGATGACTCCACGAACAA 59.725 52.381 0.00 0.00 44.08 2.83
4419 6260 1.909302 AGGGATGACTCCACGAACAAT 59.091 47.619 0.00 0.00 44.08 2.71
4420 6261 2.305927 AGGGATGACTCCACGAACAATT 59.694 45.455 0.00 0.00 44.08 2.32
4421 6262 3.081804 GGGATGACTCCACGAACAATTT 58.918 45.455 0.00 0.00 44.08 1.82
4422 6263 3.127030 GGGATGACTCCACGAACAATTTC 59.873 47.826 0.00 0.00 44.08 2.17
4432 6273 2.325509 GAACAATTTCGTTCGGTGGG 57.674 50.000 0.00 0.00 36.26 4.61
4433 6274 1.874872 GAACAATTTCGTTCGGTGGGA 59.125 47.619 0.00 0.00 36.26 4.37
4434 6275 1.519408 ACAATTTCGTTCGGTGGGAG 58.481 50.000 0.00 0.00 0.00 4.30
4435 6276 0.802494 CAATTTCGTTCGGTGGGAGG 59.198 55.000 0.00 0.00 0.00 4.30
4436 6277 0.688487 AATTTCGTTCGGTGGGAGGA 59.312 50.000 0.00 0.00 0.00 3.71
4437 6278 0.036671 ATTTCGTTCGGTGGGAGGAC 60.037 55.000 0.00 0.00 0.00 3.85
4438 6279 2.103339 TTTCGTTCGGTGGGAGGACC 62.103 60.000 0.00 0.00 40.81 4.46
4452 6293 4.717313 GACCACCCCAGCCCGAAC 62.717 72.222 0.00 0.00 0.00 3.95
4462 6303 4.778143 GCCCGAACGCCACCTCAT 62.778 66.667 0.00 0.00 0.00 2.90
4463 6304 2.511600 CCCGAACGCCACCTCATC 60.512 66.667 0.00 0.00 0.00 2.92
4464 6305 2.885644 CCGAACGCCACCTCATCG 60.886 66.667 0.00 0.00 0.00 3.84
4465 6306 2.126071 CGAACGCCACCTCATCGT 60.126 61.111 0.00 0.00 38.15 3.73
4467 6308 1.787847 GAACGCCACCTCATCGTTG 59.212 57.895 3.93 0.00 44.99 4.10
4468 6309 1.635663 GAACGCCACCTCATCGTTGG 61.636 60.000 3.93 0.00 44.99 3.77
4469 6310 2.047274 CGCCACCTCATCGTTGGT 60.047 61.111 0.00 0.00 36.96 3.67
4470 6311 1.671054 CGCCACCTCATCGTTGGTT 60.671 57.895 0.00 0.00 33.75 3.67
4471 6312 1.234615 CGCCACCTCATCGTTGGTTT 61.235 55.000 0.00 0.00 33.75 3.27
4472 6313 0.958822 GCCACCTCATCGTTGGTTTT 59.041 50.000 0.00 0.00 33.75 2.43
4473 6314 1.339929 GCCACCTCATCGTTGGTTTTT 59.660 47.619 0.00 0.00 33.75 1.94
4506 6347 6.764379 TGAAAAACAGAAAAGAAAACCCAGT 58.236 32.000 0.00 0.00 0.00 4.00
4507 6348 7.897864 TGAAAAACAGAAAAGAAAACCCAGTA 58.102 30.769 0.00 0.00 0.00 2.74
4508 6349 8.536175 TGAAAAACAGAAAAGAAAACCCAGTAT 58.464 29.630 0.00 0.00 0.00 2.12
4512 6353 8.990163 AACAGAAAAGAAAACCCAGTATAAGA 57.010 30.769 0.00 0.00 0.00 2.10
4513 6354 8.990163 ACAGAAAAGAAAACCCAGTATAAGAA 57.010 30.769 0.00 0.00 0.00 2.52
4514 6355 9.416284 ACAGAAAAGAAAACCCAGTATAAGAAA 57.584 29.630 0.00 0.00 0.00 2.52
4521 6362 9.981114 AGAAAACCCAGTATAAGAAAACAAATG 57.019 29.630 0.00 0.00 0.00 2.32
4522 6363 9.974980 GAAAACCCAGTATAAGAAAACAAATGA 57.025 29.630 0.00 0.00 0.00 2.57
4523 6364 9.981114 AAAACCCAGTATAAGAAAACAAATGAG 57.019 29.630 0.00 0.00 0.00 2.90
4524 6365 8.934023 AACCCAGTATAAGAAAACAAATGAGA 57.066 30.769 0.00 0.00 0.00 3.27
4525 6366 8.934023 ACCCAGTATAAGAAAACAAATGAGAA 57.066 30.769 0.00 0.00 0.00 2.87
4526 6367 9.362151 ACCCAGTATAAGAAAACAAATGAGAAA 57.638 29.630 0.00 0.00 0.00 2.52
4530 6371 9.914131 AGTATAAGAAAACAAATGAGAAAAGCC 57.086 29.630 0.00 0.00 0.00 4.35
4531 6372 9.914131 GTATAAGAAAACAAATGAGAAAAGCCT 57.086 29.630 0.00 0.00 0.00 4.58
4532 6373 8.822652 ATAAGAAAACAAATGAGAAAAGCCTG 57.177 30.769 0.00 0.00 0.00 4.85
4533 6374 5.604565 AGAAAACAAATGAGAAAAGCCTGG 58.395 37.500 0.00 0.00 0.00 4.45
4534 6375 5.363580 AGAAAACAAATGAGAAAAGCCTGGA 59.636 36.000 0.00 0.00 0.00 3.86
4535 6376 5.813513 AAACAAATGAGAAAAGCCTGGAT 57.186 34.783 0.00 0.00 0.00 3.41
4536 6377 5.813513 AACAAATGAGAAAAGCCTGGATT 57.186 34.783 0.00 0.00 0.00 3.01
4537 6378 5.813513 ACAAATGAGAAAAGCCTGGATTT 57.186 34.783 3.67 3.67 0.00 2.17
4538 6379 6.178607 ACAAATGAGAAAAGCCTGGATTTT 57.821 33.333 21.50 21.50 33.74 1.82
4539 6380 6.594744 ACAAATGAGAAAAGCCTGGATTTTT 58.405 32.000 22.13 14.85 31.14 1.94
4563 6404 8.825667 TTTATTTCTGTGACAAATAAAAGCCC 57.174 30.769 10.95 0.00 40.36 5.19
4564 6405 5.860941 TTTCTGTGACAAATAAAAGCCCA 57.139 34.783 0.00 0.00 0.00 5.36
4565 6406 4.846779 TCTGTGACAAATAAAAGCCCAC 57.153 40.909 0.00 0.00 0.00 4.61
4566 6407 4.469657 TCTGTGACAAATAAAAGCCCACT 58.530 39.130 0.00 0.00 0.00 4.00
4567 6408 4.892934 TCTGTGACAAATAAAAGCCCACTT 59.107 37.500 0.00 0.00 37.90 3.16
4589 6430 4.624336 TTTTGCTGTGCTACGAAAAAGA 57.376 36.364 0.00 0.00 0.00 2.52
4590 6431 4.624336 TTTGCTGTGCTACGAAAAAGAA 57.376 36.364 0.00 0.00 0.00 2.52
4591 6432 4.624336 TTGCTGTGCTACGAAAAAGAAA 57.376 36.364 0.00 0.00 0.00 2.52
4592 6433 4.624336 TGCTGTGCTACGAAAAAGAAAA 57.376 36.364 0.00 0.00 0.00 2.29
4593 6434 5.181690 TGCTGTGCTACGAAAAAGAAAAT 57.818 34.783 0.00 0.00 0.00 1.82
4594 6435 6.307031 TGCTGTGCTACGAAAAAGAAAATA 57.693 33.333 0.00 0.00 0.00 1.40
4595 6436 6.908825 TGCTGTGCTACGAAAAAGAAAATAT 58.091 32.000 0.00 0.00 0.00 1.28
4596 6437 6.801377 TGCTGTGCTACGAAAAAGAAAATATG 59.199 34.615 0.00 0.00 0.00 1.78
4597 6438 6.251376 GCTGTGCTACGAAAAAGAAAATATGG 59.749 38.462 0.00 0.00 0.00 2.74
4598 6439 6.616947 TGTGCTACGAAAAAGAAAATATGGG 58.383 36.000 0.00 0.00 0.00 4.00
4599 6440 5.515270 GTGCTACGAAAAAGAAAATATGGGC 59.485 40.000 0.00 0.00 0.00 5.36
4600 6441 5.417580 TGCTACGAAAAAGAAAATATGGGCT 59.582 36.000 0.00 0.00 0.00 5.19
4601 6442 6.071616 TGCTACGAAAAAGAAAATATGGGCTT 60.072 34.615 0.00 0.00 0.00 4.35
4602 6443 6.811665 GCTACGAAAAAGAAAATATGGGCTTT 59.188 34.615 0.00 0.00 32.38 3.51
4603 6444 7.330946 GCTACGAAAAAGAAAATATGGGCTTTT 59.669 33.333 0.00 0.00 40.98 2.27
4604 6445 9.203421 CTACGAAAAAGAAAATATGGGCTTTTT 57.797 29.630 16.12 16.12 46.93 1.94
4605 6446 7.860613 ACGAAAAAGAAAATATGGGCTTTTTG 58.139 30.769 18.97 14.98 45.33 2.44
4606 6447 6.796552 CGAAAAAGAAAATATGGGCTTTTTGC 59.203 34.615 18.97 12.81 45.33 3.68
4607 6448 7.307930 CGAAAAAGAAAATATGGGCTTTTTGCT 60.308 33.333 18.97 4.49 45.33 3.91
4608 6449 6.806388 AAAGAAAATATGGGCTTTTTGCTG 57.194 33.333 0.00 0.00 42.39 4.41
4609 6450 5.488262 AGAAAATATGGGCTTTTTGCTGT 57.512 34.783 0.00 0.00 42.39 4.40
4610 6451 5.240121 AGAAAATATGGGCTTTTTGCTGTG 58.760 37.500 0.00 0.00 42.39 3.66
4611 6452 4.888326 AAATATGGGCTTTTTGCTGTGA 57.112 36.364 0.00 0.00 42.39 3.58
4612 6453 3.874392 ATATGGGCTTTTTGCTGTGAC 57.126 42.857 0.00 0.00 42.39 3.67
4613 6454 0.681175 ATGGGCTTTTTGCTGTGACC 59.319 50.000 0.00 0.00 42.39 4.02
4614 6455 0.685785 TGGGCTTTTTGCTGTGACCA 60.686 50.000 0.00 0.00 42.39 4.02
4615 6456 0.463620 GGGCTTTTTGCTGTGACCAA 59.536 50.000 0.00 0.00 42.39 3.67
4616 6457 1.570813 GGCTTTTTGCTGTGACCAAC 58.429 50.000 0.00 0.00 42.39 3.77
4617 6458 1.134848 GGCTTTTTGCTGTGACCAACA 60.135 47.619 0.00 0.00 42.39 3.33
4618 6459 2.615869 GCTTTTTGCTGTGACCAACAA 58.384 42.857 0.00 0.00 38.67 2.83
4619 6460 3.197265 GCTTTTTGCTGTGACCAACAAT 58.803 40.909 0.00 0.00 38.67 2.71
4620 6461 3.622612 GCTTTTTGCTGTGACCAACAATT 59.377 39.130 0.00 0.00 38.67 2.32
4621 6462 4.094739 GCTTTTTGCTGTGACCAACAATTT 59.905 37.500 0.00 0.00 38.67 1.82
4622 6463 5.391843 GCTTTTTGCTGTGACCAACAATTTT 60.392 36.000 0.00 0.00 38.67 1.82
4623 6464 5.542616 TTTTGCTGTGACCAACAATTTTG 57.457 34.783 0.00 0.00 38.67 2.44
4624 6465 2.548875 TGCTGTGACCAACAATTTTGC 58.451 42.857 0.00 0.00 38.67 3.68
4625 6466 2.093816 TGCTGTGACCAACAATTTTGCA 60.094 40.909 0.00 0.00 38.67 4.08
4626 6467 2.935201 GCTGTGACCAACAATTTTGCAA 59.065 40.909 0.00 0.00 38.67 4.08
4627 6468 3.560896 GCTGTGACCAACAATTTTGCAAT 59.439 39.130 0.00 0.00 38.67 3.56
4628 6469 4.749099 GCTGTGACCAACAATTTTGCAATA 59.251 37.500 0.00 0.00 38.67 1.90
4629 6470 5.236047 GCTGTGACCAACAATTTTGCAATAA 59.764 36.000 0.00 0.00 38.67 1.40
4630 6471 6.238320 GCTGTGACCAACAATTTTGCAATAAA 60.238 34.615 0.00 0.00 38.67 1.40
4631 6472 7.615582 TGTGACCAACAATTTTGCAATAAAA 57.384 28.000 0.00 0.00 35.24 1.52
4632 6473 7.467623 TGTGACCAACAATTTTGCAATAAAAC 58.532 30.769 0.00 0.00 35.24 2.43
4633 6474 7.119699 TGTGACCAACAATTTTGCAATAAAACA 59.880 29.630 0.00 0.00 35.24 2.83
4634 6475 7.639461 GTGACCAACAATTTTGCAATAAAACAG 59.361 33.333 0.00 0.00 0.00 3.16
4635 6476 7.335422 TGACCAACAATTTTGCAATAAAACAGT 59.665 29.630 0.00 0.00 0.00 3.55
4636 6477 8.723942 ACCAACAATTTTGCAATAAAACAGTA 57.276 26.923 0.00 0.00 0.00 2.74
4637 6478 9.336171 ACCAACAATTTTGCAATAAAACAGTAT 57.664 25.926 0.00 0.00 0.00 2.12
4663 6504 8.800231 AAAAGAAAATGTAAAAATGCCATTGC 57.200 26.923 0.00 0.00 38.26 3.56
4681 6522 9.507329 TGCCATTGCAATAAAAGGTAAAATAAA 57.493 25.926 12.53 0.00 46.66 1.40
4695 6536 8.675705 AGGTAAAATAAATAATTTGCCATGGC 57.324 30.769 30.54 30.54 37.85 4.40
4710 6551 5.582689 GCCATGGCAATAGAAAGTAAGTT 57.417 39.130 32.08 0.00 41.49 2.66
4711 6552 5.965922 GCCATGGCAATAGAAAGTAAGTTT 58.034 37.500 32.08 0.00 41.49 2.66
4712 6553 7.095695 GCCATGGCAATAGAAAGTAAGTTTA 57.904 36.000 32.08 0.00 41.49 2.01
4713 6554 7.543756 GCCATGGCAATAGAAAGTAAGTTTAA 58.456 34.615 32.08 0.00 41.49 1.52
4714 6555 8.197439 GCCATGGCAATAGAAAGTAAGTTTAAT 58.803 33.333 32.08 0.00 41.49 1.40
4718 6559 9.418045 TGGCAATAGAAAGTAAGTTTAATTTGC 57.582 29.630 2.46 0.00 36.40 3.68
4719 6560 8.869897 GGCAATAGAAAGTAAGTTTAATTTGCC 58.130 33.333 14.19 14.19 42.70 4.52
4720 6561 9.418045 GCAATAGAAAGTAAGTTTAATTTGCCA 57.582 29.630 2.46 0.00 33.81 4.92
4729 6570 9.686683 AGTAAGTTTAATTTGCCATGATAGACT 57.313 29.630 0.00 0.00 0.00 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 1.550130 GGATTGTGGACAGGGGACGA 61.550 60.000 0.00 0.00 0.00 4.20
20 21 2.228059 GCATGGATCTCAGGATTGTGG 58.772 52.381 0.00 0.00 31.46 4.17
28 29 1.880675 GGCTTGATGCATGGATCTCAG 59.119 52.381 25.23 20.78 45.15 3.35
67 68 1.098712 AAAAACAACGGAGCCTCGCA 61.099 50.000 0.00 0.00 0.00 5.10
109 111 1.299468 CCATACCTGTCGAGCTCGC 60.299 63.158 30.97 24.35 39.60 5.03
130 132 0.393537 ATCAAGAAGGAAGCCGCCAG 60.394 55.000 0.00 0.00 0.00 4.85
135 137 1.680207 GCCATGATCAAGAAGGAAGCC 59.320 52.381 0.00 0.00 0.00 4.35
138 140 2.018644 GCGGCCATGATCAAGAAGGAA 61.019 52.381 2.24 0.00 0.00 3.36
164 166 1.135460 GCCTCAGAACAAGCAAGCATC 60.135 52.381 0.00 0.00 0.00 3.91
206 208 3.694058 AATGCCTCCTGCCAGCTCG 62.694 63.158 0.00 0.00 40.16 5.03
217 219 1.475682 CTTGGGAAAGAGCAATGCCTC 59.524 52.381 0.00 0.00 0.00 4.70
220 222 0.604578 TGCTTGGGAAAGAGCAATGC 59.395 50.000 0.00 0.00 45.19 3.56
232 234 0.875474 CGCCAAAACAACTGCTTGGG 60.875 55.000 11.27 0.00 40.05 4.12
235 237 1.588667 CGCGCCAAAACAACTGCTT 60.589 52.632 0.00 0.00 0.00 3.91
272 274 2.002586 CAATCCGACGCAAAGATGACT 58.997 47.619 0.00 0.00 0.00 3.41
284 286 1.032114 CCAGGGAAAGGCAATCCGAC 61.032 60.000 2.95 0.00 37.87 4.79
334 336 2.590575 CAAACCCCACGCACGAGT 60.591 61.111 0.00 0.00 0.00 4.18
340 342 3.601685 CCACCACAAACCCCACGC 61.602 66.667 0.00 0.00 0.00 5.34
341 343 3.601685 GCCACCACAAACCCCACG 61.602 66.667 0.00 0.00 0.00 4.94
377 379 6.110543 TGCACATTTGATATGAAACTCGAG 57.889 37.500 11.84 11.84 0.00 4.04
383 385 8.927721 CAAGAAACATGCACATTTGATATGAAA 58.072 29.630 1.85 0.00 0.00 2.69
392 394 2.406130 CGCCAAGAAACATGCACATTT 58.594 42.857 0.00 0.00 0.00 2.32
393 395 1.337074 CCGCCAAGAAACATGCACATT 60.337 47.619 0.00 0.00 0.00 2.71
394 396 0.244450 CCGCCAAGAAACATGCACAT 59.756 50.000 0.00 0.00 0.00 3.21
395 397 1.106351 ACCGCCAAGAAACATGCACA 61.106 50.000 0.00 0.00 0.00 4.57
396 398 0.878416 TACCGCCAAGAAACATGCAC 59.122 50.000 0.00 0.00 0.00 4.57
397 399 0.878416 GTACCGCCAAGAAACATGCA 59.122 50.000 0.00 0.00 0.00 3.96
398 400 0.878416 TGTACCGCCAAGAAACATGC 59.122 50.000 0.00 0.00 0.00 4.06
405 412 3.275143 CCATTACATTGTACCGCCAAGA 58.725 45.455 0.00 0.00 0.00 3.02
408 415 1.065053 AGCCATTACATTGTACCGCCA 60.065 47.619 0.00 0.00 0.00 5.69
423 430 9.305555 ACATGATTTAGCTAAAATATGAGCCAT 57.694 29.630 31.66 19.06 37.93 4.40
494 520 4.714632 TCCGAAAATTCCACAGAGTTTCT 58.285 39.130 0.00 0.00 31.30 2.52
495 521 5.238650 TCTTCCGAAAATTCCACAGAGTTTC 59.761 40.000 0.00 0.00 31.30 2.78
496 522 5.130350 TCTTCCGAAAATTCCACAGAGTTT 58.870 37.500 0.00 0.00 33.71 2.66
497 523 4.714632 TCTTCCGAAAATTCCACAGAGTT 58.285 39.130 0.00 0.00 0.00 3.01
498 524 4.351874 TCTTCCGAAAATTCCACAGAGT 57.648 40.909 0.00 0.00 0.00 3.24
499 525 5.689383 TTTCTTCCGAAAATTCCACAGAG 57.311 39.130 0.00 0.00 36.26 3.35
500 526 6.458232 TTTTTCTTCCGAAAATTCCACAGA 57.542 33.333 1.61 0.00 45.60 3.41
605 710 9.708092 GCTCTTATATTAATTTACGGAAGGAGT 57.292 33.333 0.00 0.00 0.00 3.85
606 711 8.861101 CGCTCTTATATTAATTTACGGAAGGAG 58.139 37.037 0.00 0.00 0.00 3.69
607 712 8.362639 ACGCTCTTATATTAATTTACGGAAGGA 58.637 33.333 0.00 0.00 0.00 3.36
608 713 8.530269 ACGCTCTTATATTAATTTACGGAAGG 57.470 34.615 0.00 0.00 0.00 3.46
626 731 9.570488 CACTACTTTAGTATTCTAAACGCTCTT 57.430 33.333 0.76 0.00 40.05 2.85
627 732 8.954350 TCACTACTTTAGTATTCTAAACGCTCT 58.046 33.333 0.76 0.00 40.05 4.09
628 733 9.733219 ATCACTACTTTAGTATTCTAAACGCTC 57.267 33.333 0.76 0.00 40.05 5.03
669 774 9.670442 TGGATAGTACTCCCTCTGTAAATTAAT 57.330 33.333 0.00 0.00 34.12 1.40
670 775 8.921205 GTGGATAGTACTCCCTCTGTAAATTAA 58.079 37.037 0.00 0.00 34.12 1.40
671 776 7.508296 GGTGGATAGTACTCCCTCTGTAAATTA 59.492 40.741 0.00 0.00 34.12 1.40
672 777 6.326843 GGTGGATAGTACTCCCTCTGTAAATT 59.673 42.308 0.00 0.00 34.12 1.82
673 778 5.839606 GGTGGATAGTACTCCCTCTGTAAAT 59.160 44.000 0.00 0.00 34.12 1.40
674 779 5.206587 GGTGGATAGTACTCCCTCTGTAAA 58.793 45.833 0.00 0.00 34.12 2.01
675 780 4.231195 TGGTGGATAGTACTCCCTCTGTAA 59.769 45.833 0.00 0.00 34.12 2.41
676 781 3.789840 TGGTGGATAGTACTCCCTCTGTA 59.210 47.826 0.00 0.00 34.12 2.74
677 782 2.585900 TGGTGGATAGTACTCCCTCTGT 59.414 50.000 0.00 0.00 34.12 3.41
680 785 1.955080 CGTGGTGGATAGTACTCCCTC 59.045 57.143 0.00 3.26 34.12 4.30
681 786 1.411216 CCGTGGTGGATAGTACTCCCT 60.411 57.143 0.00 0.00 42.00 4.20
682 787 1.038280 CCGTGGTGGATAGTACTCCC 58.962 60.000 0.00 2.67 42.00 4.30
684 789 2.289002 CGTACCGTGGTGGATAGTACTC 59.711 54.545 0.00 0.00 42.00 2.59
685 790 2.292267 CGTACCGTGGTGGATAGTACT 58.708 52.381 0.00 0.00 42.00 2.73
686 791 2.017049 ACGTACCGTGGTGGATAGTAC 58.983 52.381 0.72 0.00 42.00 2.73
729 2308 1.007038 GGTCACGCGTGGACTGTAA 60.007 57.895 36.41 14.91 35.61 2.41
734 2313 4.634133 TCACGGTCACGCGTGGAC 62.634 66.667 36.41 29.44 46.04 4.02
740 2319 3.097728 CTCACGTCACGGTCACGC 61.098 66.667 3.97 0.00 46.04 5.34
829 2410 9.624373 AAATGATGCATGGATAGATAGATAACC 57.376 33.333 2.46 0.00 0.00 2.85
929 2510 5.749109 GGATGTGGAGCGTGTATATATAAGC 59.251 44.000 8.93 8.93 0.00 3.09
992 2577 1.268896 CGGACGACGCCATTGTACTAT 60.269 52.381 0.00 0.00 34.82 2.12
993 2578 0.099259 CGGACGACGCCATTGTACTA 59.901 55.000 0.00 0.00 34.82 1.82
994 2579 1.153901 CGGACGACGCCATTGTACT 60.154 57.895 0.00 0.00 34.82 2.73
995 2580 3.380671 CGGACGACGCCATTGTAC 58.619 61.111 0.00 0.00 34.82 2.90
1319 2904 0.388134 CTCCGACCACCACTTGTACG 60.388 60.000 0.00 0.00 0.00 3.67
1518 3103 1.014044 ACCGACGACATGCATGACAC 61.014 55.000 32.75 20.06 0.00 3.67
1519 3104 1.013524 CACCGACGACATGCATGACA 61.014 55.000 32.75 0.00 0.00 3.58
1520 3105 1.709760 CACCGACGACATGCATGAC 59.290 57.895 32.75 24.87 0.00 3.06
1521 3106 2.100031 GCACCGACGACATGCATGA 61.100 57.895 32.75 0.00 39.23 3.07
1522 3107 2.400798 GCACCGACGACATGCATG 59.599 61.111 25.09 25.09 39.23 4.06
1523 3108 2.819595 GGCACCGACGACATGCAT 60.820 61.111 16.83 0.00 41.27 3.96
1524 3109 4.306967 TGGCACCGACGACATGCA 62.307 61.111 16.83 0.00 41.27 3.96
1525 3110 3.788766 GTGGCACCGACGACATGC 61.789 66.667 6.29 3.14 38.68 4.06
1526 3111 3.478394 CGTGGCACCGACGACATG 61.478 66.667 12.86 0.00 39.21 3.21
1527 3112 3.909258 GACGTGGCACCGACGACAT 62.909 63.158 12.86 0.00 39.21 3.06
1554 3143 0.869068 TACACGCACCATGAAAACGG 59.131 50.000 0.00 0.00 0.00 4.44
1555 3144 2.286477 TGTTACACGCACCATGAAAACG 60.286 45.455 0.00 0.00 0.00 3.60
1556 3145 3.341857 TGTTACACGCACCATGAAAAC 57.658 42.857 0.00 0.00 0.00 2.43
1557 3146 3.128764 TGTTGTTACACGCACCATGAAAA 59.871 39.130 0.00 0.00 0.00 2.29
1559 3148 2.289274 CTGTTGTTACACGCACCATGAA 59.711 45.455 0.00 0.00 0.00 2.57
1560 3149 1.870402 CTGTTGTTACACGCACCATGA 59.130 47.619 0.00 0.00 0.00 3.07
1561 3150 1.870402 TCTGTTGTTACACGCACCATG 59.130 47.619 0.00 0.00 0.00 3.66
1564 3153 2.157668 CAGATCTGTTGTTACACGCACC 59.842 50.000 14.95 0.00 0.00 5.01
1936 3554 4.475135 GGGCGCTGGAAGGTCTCC 62.475 72.222 7.64 0.00 45.64 3.71
2405 4024 2.262915 GAGGCTCCTGTGGTCGTG 59.737 66.667 2.15 0.00 0.00 4.35
2616 4238 1.068816 TGAGTACGTGATGTGTCGTGG 60.069 52.381 0.00 0.00 40.50 4.94
2733 4355 0.387239 GGTCAAGTTTGCGTGATGCC 60.387 55.000 0.00 0.00 45.60 4.40
2737 4359 2.254546 AGATGGTCAAGTTTGCGTGA 57.745 45.000 0.00 0.00 0.00 4.35
2864 4534 0.107508 ACGAGGACGATCGGGTTAGA 60.108 55.000 20.98 0.00 46.91 2.10
3216 4916 3.059834 CCGTCGTAAAACTTGTATGTCCG 59.940 47.826 0.00 0.00 0.00 4.79
3243 4943 2.206750 GGCGAACCGATAAAGCACATA 58.793 47.619 0.00 0.00 0.00 2.29
3245 4945 1.022451 GGGCGAACCGATAAAGCACA 61.022 55.000 0.00 0.00 36.48 4.57
3262 4962 3.390521 TGTAGCTCAGGCCGTGGG 61.391 66.667 0.00 0.00 39.73 4.61
3593 5296 1.371183 CACCTTGAGCGAGAACCCA 59.629 57.895 0.00 0.00 0.00 4.51
3736 5439 9.524106 GAGGAAAACTAATCTAAGTAGAGAAGC 57.476 37.037 0.00 0.00 35.50 3.86
3810 5513 4.346730 TGAATACCACTAAACTCCGAGGA 58.653 43.478 0.00 0.00 0.00 3.71
3812 5515 4.113354 GCTGAATACCACTAAACTCCGAG 58.887 47.826 0.00 0.00 0.00 4.63
3813 5516 3.512329 TGCTGAATACCACTAAACTCCGA 59.488 43.478 0.00 0.00 0.00 4.55
3814 5517 3.857052 TGCTGAATACCACTAAACTCCG 58.143 45.455 0.00 0.00 0.00 4.63
3816 5519 5.525378 CAGGATGCTGAATACCACTAAACTC 59.475 44.000 8.85 0.00 0.00 3.01
3817 5520 5.431765 CAGGATGCTGAATACCACTAAACT 58.568 41.667 8.85 0.00 0.00 2.66
3818 5521 5.741388 CAGGATGCTGAATACCACTAAAC 57.259 43.478 8.85 0.00 0.00 2.01
3982 5806 6.308282 AGAAAAGTGTCTAGATAAGAAACGCG 59.692 38.462 3.53 3.53 45.88 6.01
4045 5871 8.899427 TTTTCTGATCTATCATCTCCATGTTC 57.101 34.615 0.00 0.00 36.02 3.18
4149 5975 7.767659 CCTAAACTATCGCCCTTACTTTACTTT 59.232 37.037 0.00 0.00 0.00 2.66
4150 5976 7.270779 CCTAAACTATCGCCCTTACTTTACTT 58.729 38.462 0.00 0.00 0.00 2.24
4151 5977 6.684865 GCCTAAACTATCGCCCTTACTTTACT 60.685 42.308 0.00 0.00 0.00 2.24
4152 5978 5.464722 GCCTAAACTATCGCCCTTACTTTAC 59.535 44.000 0.00 0.00 0.00 2.01
4153 5979 5.129155 TGCCTAAACTATCGCCCTTACTTTA 59.871 40.000 0.00 0.00 0.00 1.85
4168 5994 1.142262 AGTGGAACCGTTGCCTAAACT 59.858 47.619 0.00 0.00 37.80 2.66
4177 6003 1.064979 AGTTCACCAAGTGGAACCGTT 60.065 47.619 3.83 0.00 37.80 4.44
4186 6012 0.393077 CTCACCGGAGTTCACCAAGT 59.607 55.000 9.46 0.00 36.36 3.16
4202 6028 1.415672 AACAGGGAGCCGTTTCCTCA 61.416 55.000 2.87 0.00 37.40 3.86
4215 6041 5.712152 AGAAAAATAGAGTGCAAACAGGG 57.288 39.130 0.00 0.00 0.00 4.45
4252 6078 6.506500 AAGAGCACAAAATAGAGGAACATG 57.493 37.500 0.00 0.00 0.00 3.21
4255 6081 5.335976 CCCAAAGAGCACAAAATAGAGGAAC 60.336 44.000 0.00 0.00 0.00 3.62
4258 6084 4.082125 ACCCAAAGAGCACAAAATAGAGG 58.918 43.478 0.00 0.00 0.00 3.69
4281 6122 5.344743 TTTTGTAAATGTGGAAAGTGGCA 57.655 34.783 0.00 0.00 0.00 4.92
4296 6137 9.315363 ACCCATAACTTGGTAATGATTTTGTAA 57.685 29.630 0.00 0.00 44.83 2.41
4300 6141 8.429237 TTGACCCATAACTTGGTAATGATTTT 57.571 30.769 0.00 0.00 44.83 1.82
4312 6153 5.949952 GTCCATAGGTTTTGACCCATAACTT 59.050 40.000 0.00 0.00 0.00 2.66
4316 6157 3.683281 GCGTCCATAGGTTTTGACCCATA 60.683 47.826 0.00 0.00 0.00 2.74
4319 6160 1.092348 GCGTCCATAGGTTTTGACCC 58.908 55.000 0.00 0.00 0.00 4.46
4331 6172 2.657296 CGCGTTATCGGCGTCCAT 60.657 61.111 6.85 0.00 37.56 3.41
4354 6195 4.097361 GAGGTCCCCAGGCCGAAC 62.097 72.222 0.00 0.00 0.00 3.95
4365 6206 1.605971 GAGTTCGGTCTGGGAGGTCC 61.606 65.000 0.00 0.00 0.00 4.46
4366 6207 1.605971 GGAGTTCGGTCTGGGAGGTC 61.606 65.000 0.00 0.00 0.00 3.85
4367 6208 1.609794 GGAGTTCGGTCTGGGAGGT 60.610 63.158 0.00 0.00 0.00 3.85
4368 6209 2.359967 GGGAGTTCGGTCTGGGAGG 61.360 68.421 0.00 0.00 0.00 4.30
4369 6210 1.305381 AGGGAGTTCGGTCTGGGAG 60.305 63.158 0.00 0.00 0.00 4.30
4370 6211 1.305046 GAGGGAGTTCGGTCTGGGA 60.305 63.158 0.00 0.00 0.00 4.37
4371 6212 2.711922 CGAGGGAGTTCGGTCTGGG 61.712 68.421 0.00 0.00 36.95 4.45
4372 6213 1.533469 AACGAGGGAGTTCGGTCTGG 61.533 60.000 0.00 0.00 44.57 3.86
4373 6214 1.965219 AACGAGGGAGTTCGGTCTG 59.035 57.895 0.00 0.00 44.57 3.51
4374 6215 4.515718 AACGAGGGAGTTCGGTCT 57.484 55.556 0.00 0.00 44.57 3.85
4379 6220 0.455005 CCTACCGAACGAGGGAGTTC 59.545 60.000 7.55 0.21 40.73 3.01
4380 6221 0.038744 TCCTACCGAACGAGGGAGTT 59.961 55.000 7.55 0.00 40.73 3.01
4381 6222 0.394080 CTCCTACCGAACGAGGGAGT 60.394 60.000 15.53 1.92 40.73 3.85
4382 6223 1.102222 CCTCCTACCGAACGAGGGAG 61.102 65.000 16.24 16.24 42.02 4.30
4383 6224 1.077212 CCTCCTACCGAACGAGGGA 60.077 63.158 0.00 0.07 39.69 4.20
4384 6225 3.522808 CCTCCTACCGAACGAGGG 58.477 66.667 0.00 0.00 39.69 4.30
4385 6226 0.467659 ATCCCTCCTACCGAACGAGG 60.468 60.000 0.00 0.00 42.48 4.63
4386 6227 0.669077 CATCCCTCCTACCGAACGAG 59.331 60.000 0.00 0.00 0.00 4.18
4387 6228 0.256752 TCATCCCTCCTACCGAACGA 59.743 55.000 0.00 0.00 0.00 3.85
4388 6229 0.384669 GTCATCCCTCCTACCGAACG 59.615 60.000 0.00 0.00 0.00 3.95
4389 6230 1.682323 GAGTCATCCCTCCTACCGAAC 59.318 57.143 0.00 0.00 0.00 3.95
4390 6231 1.411216 GGAGTCATCCCTCCTACCGAA 60.411 57.143 0.00 0.00 46.34 4.30
4391 6232 0.185416 GGAGTCATCCCTCCTACCGA 59.815 60.000 0.00 0.00 46.34 4.69
4392 6233 2.734893 GGAGTCATCCCTCCTACCG 58.265 63.158 0.00 0.00 46.34 4.02
4398 6239 0.895530 TGTTCGTGGAGTCATCCCTC 59.104 55.000 0.00 0.00 46.04 4.30
4399 6240 1.348064 TTGTTCGTGGAGTCATCCCT 58.652 50.000 0.00 0.00 46.04 4.20
4400 6241 2.403252 ATTGTTCGTGGAGTCATCCC 57.597 50.000 0.00 0.00 46.04 3.85
4401 6242 4.342352 GAAATTGTTCGTGGAGTCATCC 57.658 45.455 0.00 0.00 46.87 3.51
4413 6254 1.874872 TCCCACCGAACGAAATTGTTC 59.125 47.619 3.82 3.82 43.76 3.18
4414 6255 1.877443 CTCCCACCGAACGAAATTGTT 59.123 47.619 0.00 0.00 34.02 2.83
4415 6256 1.519408 CTCCCACCGAACGAAATTGT 58.481 50.000 0.00 0.00 0.00 2.71
4416 6257 0.802494 CCTCCCACCGAACGAAATTG 59.198 55.000 0.00 0.00 0.00 2.32
4417 6258 0.688487 TCCTCCCACCGAACGAAATT 59.312 50.000 0.00 0.00 0.00 1.82
4418 6259 0.036671 GTCCTCCCACCGAACGAAAT 60.037 55.000 0.00 0.00 0.00 2.17
4419 6260 1.368579 GTCCTCCCACCGAACGAAA 59.631 57.895 0.00 0.00 0.00 3.46
4420 6261 2.576832 GGTCCTCCCACCGAACGAA 61.577 63.158 0.00 0.00 0.00 3.85
4421 6262 2.993264 GGTCCTCCCACCGAACGA 60.993 66.667 0.00 0.00 0.00 3.85
4422 6263 3.307906 TGGTCCTCCCACCGAACG 61.308 66.667 0.00 0.00 38.72 3.95
4435 6276 4.717313 GTTCGGGCTGGGGTGGTC 62.717 72.222 0.00 0.00 0.00 4.02
4445 6286 4.778143 ATGAGGTGGCGTTCGGGC 62.778 66.667 0.00 0.00 42.69 6.13
4446 6287 2.511600 GATGAGGTGGCGTTCGGG 60.512 66.667 0.00 0.00 0.00 5.14
4447 6288 2.885644 CGATGAGGTGGCGTTCGG 60.886 66.667 0.00 0.00 0.00 4.30
4448 6289 1.736645 AACGATGAGGTGGCGTTCG 60.737 57.895 0.00 0.00 43.87 3.95
4449 6290 1.787847 CAACGATGAGGTGGCGTTC 59.212 57.895 0.00 0.00 45.25 3.95
4481 6322 6.873605 ACTGGGTTTTCTTTTCTGTTTTTCAG 59.126 34.615 0.00 0.00 44.85 3.02
4482 6323 6.764379 ACTGGGTTTTCTTTTCTGTTTTTCA 58.236 32.000 0.00 0.00 0.00 2.69
4483 6324 8.942338 ATACTGGGTTTTCTTTTCTGTTTTTC 57.058 30.769 0.00 0.00 0.00 2.29
4486 6327 9.416284 TCTTATACTGGGTTTTCTTTTCTGTTT 57.584 29.630 0.00 0.00 0.00 2.83
4487 6328 8.990163 TCTTATACTGGGTTTTCTTTTCTGTT 57.010 30.769 0.00 0.00 0.00 3.16
4488 6329 8.990163 TTCTTATACTGGGTTTTCTTTTCTGT 57.010 30.769 0.00 0.00 0.00 3.41
4495 6336 9.981114 CATTTGTTTTCTTATACTGGGTTTTCT 57.019 29.630 0.00 0.00 0.00 2.52
4496 6337 9.974980 TCATTTGTTTTCTTATACTGGGTTTTC 57.025 29.630 0.00 0.00 0.00 2.29
4497 6338 9.981114 CTCATTTGTTTTCTTATACTGGGTTTT 57.019 29.630 0.00 0.00 0.00 2.43
4498 6339 9.362151 TCTCATTTGTTTTCTTATACTGGGTTT 57.638 29.630 0.00 0.00 0.00 3.27
4499 6340 8.934023 TCTCATTTGTTTTCTTATACTGGGTT 57.066 30.769 0.00 0.00 0.00 4.11
4500 6341 8.934023 TTCTCATTTGTTTTCTTATACTGGGT 57.066 30.769 0.00 0.00 0.00 4.51
4504 6345 9.914131 GGCTTTTCTCATTTGTTTTCTTATACT 57.086 29.630 0.00 0.00 0.00 2.12
4505 6346 9.914131 AGGCTTTTCTCATTTGTTTTCTTATAC 57.086 29.630 0.00 0.00 0.00 1.47
4506 6347 9.912634 CAGGCTTTTCTCATTTGTTTTCTTATA 57.087 29.630 0.00 0.00 0.00 0.98
4507 6348 7.874528 CCAGGCTTTTCTCATTTGTTTTCTTAT 59.125 33.333 0.00 0.00 0.00 1.73
4508 6349 7.069331 TCCAGGCTTTTCTCATTTGTTTTCTTA 59.931 33.333 0.00 0.00 0.00 2.10
4509 6350 6.051074 CCAGGCTTTTCTCATTTGTTTTCTT 58.949 36.000 0.00 0.00 0.00 2.52
4510 6351 5.363580 TCCAGGCTTTTCTCATTTGTTTTCT 59.636 36.000 0.00 0.00 0.00 2.52
4511 6352 5.600696 TCCAGGCTTTTCTCATTTGTTTTC 58.399 37.500 0.00 0.00 0.00 2.29
4512 6353 5.612725 TCCAGGCTTTTCTCATTTGTTTT 57.387 34.783 0.00 0.00 0.00 2.43
4513 6354 5.813513 ATCCAGGCTTTTCTCATTTGTTT 57.186 34.783 0.00 0.00 0.00 2.83
4514 6355 5.813513 AATCCAGGCTTTTCTCATTTGTT 57.186 34.783 0.00 0.00 0.00 2.83
4515 6356 5.813513 AAATCCAGGCTTTTCTCATTTGT 57.186 34.783 0.00 0.00 0.00 2.83
4537 6378 9.267084 GGGCTTTTATTTGTCACAGAAATAAAA 57.733 29.630 14.99 14.99 44.86 1.52
4538 6379 8.424918 TGGGCTTTTATTTGTCACAGAAATAAA 58.575 29.630 4.05 4.05 40.77 1.40
4539 6380 7.870445 GTGGGCTTTTATTTGTCACAGAAATAA 59.130 33.333 0.00 0.00 34.79 1.40
4540 6381 7.232534 AGTGGGCTTTTATTTGTCACAGAAATA 59.767 33.333 0.00 0.00 0.00 1.40
4541 6382 6.041979 AGTGGGCTTTTATTTGTCACAGAAAT 59.958 34.615 0.00 0.00 0.00 2.17
4542 6383 5.362430 AGTGGGCTTTTATTTGTCACAGAAA 59.638 36.000 0.00 0.00 0.00 2.52
4543 6384 4.892934 AGTGGGCTTTTATTTGTCACAGAA 59.107 37.500 0.00 0.00 0.00 3.02
4544 6385 4.469657 AGTGGGCTTTTATTTGTCACAGA 58.530 39.130 0.00 0.00 0.00 3.41
4545 6386 4.853924 AGTGGGCTTTTATTTGTCACAG 57.146 40.909 0.00 0.00 0.00 3.66
4546 6387 5.606348 AAAGTGGGCTTTTATTTGTCACA 57.394 34.783 0.00 0.00 41.78 3.58
4567 6408 4.987832 TCTTTTTCGTAGCACAGCAAAAA 58.012 34.783 0.00 0.00 0.00 1.94
4568 6409 4.624336 TCTTTTTCGTAGCACAGCAAAA 57.376 36.364 0.00 0.00 0.00 2.44
4569 6410 4.624336 TTCTTTTTCGTAGCACAGCAAA 57.376 36.364 0.00 0.00 0.00 3.68
4570 6411 4.624336 TTTCTTTTTCGTAGCACAGCAA 57.376 36.364 0.00 0.00 0.00 3.91
4571 6412 4.624336 TTTTCTTTTTCGTAGCACAGCA 57.376 36.364 0.00 0.00 0.00 4.41
4572 6413 6.251376 CCATATTTTCTTTTTCGTAGCACAGC 59.749 38.462 0.00 0.00 0.00 4.40
4573 6414 6.747280 CCCATATTTTCTTTTTCGTAGCACAG 59.253 38.462 0.00 0.00 0.00 3.66
4574 6415 6.616947 CCCATATTTTCTTTTTCGTAGCACA 58.383 36.000 0.00 0.00 0.00 4.57
4575 6416 5.515270 GCCCATATTTTCTTTTTCGTAGCAC 59.485 40.000 0.00 0.00 0.00 4.40
4576 6417 5.417580 AGCCCATATTTTCTTTTTCGTAGCA 59.582 36.000 0.00 0.00 0.00 3.49
4577 6418 5.891451 AGCCCATATTTTCTTTTTCGTAGC 58.109 37.500 0.00 0.00 0.00 3.58
4578 6419 8.757164 AAAAGCCCATATTTTCTTTTTCGTAG 57.243 30.769 0.00 0.00 35.86 3.51
4579 6420 8.983724 CAAAAAGCCCATATTTTCTTTTTCGTA 58.016 29.630 12.03 0.00 43.02 3.43
4580 6421 7.519809 GCAAAAAGCCCATATTTTCTTTTTCGT 60.520 33.333 12.03 0.00 43.02 3.85
4581 6422 6.796552 GCAAAAAGCCCATATTTTCTTTTTCG 59.203 34.615 12.03 10.13 43.02 3.46
4596 6437 5.792920 TTGTTGGTCACAGCAAAAAGCCC 62.793 47.826 0.00 0.00 43.46 5.19
4597 6438 2.676463 TTGTTGGTCACAGCAAAAAGCC 60.676 45.455 0.00 0.00 43.46 4.35
4598 6439 2.292103 TGTTGGTCACAGCAAAAAGC 57.708 45.000 0.00 0.00 46.19 3.51
4604 6445 2.093816 TGCAAAATTGTTGGTCACAGCA 60.094 40.909 0.00 0.00 36.48 4.41
4605 6446 2.548875 TGCAAAATTGTTGGTCACAGC 58.451 42.857 0.00 0.00 36.48 4.40
4606 6447 6.841443 TTATTGCAAAATTGTTGGTCACAG 57.159 33.333 1.71 0.00 36.48 3.66
4607 6448 7.119699 TGTTTTATTGCAAAATTGTTGGTCACA 59.880 29.630 1.71 0.00 0.00 3.58
4608 6449 7.467623 TGTTTTATTGCAAAATTGTTGGTCAC 58.532 30.769 1.71 0.00 0.00 3.67
4609 6450 7.335422 ACTGTTTTATTGCAAAATTGTTGGTCA 59.665 29.630 1.71 0.00 0.00 4.02
4610 6451 7.693020 ACTGTTTTATTGCAAAATTGTTGGTC 58.307 30.769 1.71 0.00 0.00 4.02
4611 6452 7.622893 ACTGTTTTATTGCAAAATTGTTGGT 57.377 28.000 1.71 0.00 0.00 3.67
4637 6478 9.890352 GCAATGGCATTTTTACATTTTCTTTTA 57.110 25.926 10.65 0.00 40.72 1.52
4638 6479 8.800231 GCAATGGCATTTTTACATTTTCTTTT 57.200 26.923 10.65 0.00 40.72 2.27
4669 6510 9.119418 GCCATGGCAAATTATTTATTTTACCTT 57.881 29.630 32.08 0.00 41.49 3.50
4670 6511 8.675705 GCCATGGCAAATTATTTATTTTACCT 57.324 30.769 32.08 0.00 41.49 3.08
4688 6529 5.582689 AACTTACTTTCTATTGCCATGGC 57.417 39.130 30.54 30.54 42.35 4.40
4692 6533 9.418045 GCAAATTAAACTTACTTTCTATTGCCA 57.582 29.630 0.00 0.00 32.60 4.92
4693 6534 8.869897 GGCAAATTAAACTTACTTTCTATTGCC 58.130 33.333 0.00 0.00 41.51 4.52
4694 6535 9.418045 TGGCAAATTAAACTTACTTTCTATTGC 57.582 29.630 0.00 0.00 35.19 3.56
4703 6544 9.686683 AGTCTATCATGGCAAATTAAACTTACT 57.313 29.630 0.00 0.00 0.00 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.