Multiple sequence alignment - TraesCS4A01G173000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G173000 chr4A 100.000 2261 0 0 1 2261 439768559 439770819 0.000000e+00 4176.0
1 TraesCS4A01G173000 chr4A 89.213 1131 109 7 1 1121 439787026 439788153 0.000000e+00 1400.0
2 TraesCS4A01G173000 chr4A 89.062 576 47 5 1700 2261 290808011 290807438 0.000000e+00 701.0
3 TraesCS4A01G173000 chr4A 82.968 775 104 21 21 781 549334641 549335401 0.000000e+00 675.0
4 TraesCS4A01G173000 chr6D 93.961 563 27 5 1702 2261 205057664 205057106 0.000000e+00 845.0
5 TraesCS4A01G173000 chr6D 93.085 564 31 6 1702 2260 205049917 205049357 0.000000e+00 819.0
6 TraesCS4A01G173000 chr6D 90.524 496 34 11 1773 2259 251067557 251068048 0.000000e+00 643.0
7 TraesCS4A01G173000 chr6D 87.273 110 10 3 1576 1681 103943944 103943835 3.050000e-24 122.0
8 TraesCS4A01G173000 chr3A 91.182 499 34 8 1768 2261 277742282 277741789 0.000000e+00 669.0
9 TraesCS4A01G173000 chr3A 90.960 177 14 2 826 1001 528942405 528942580 1.040000e-58 237.0
10 TraesCS4A01G173000 chr3A 79.500 200 27 11 1700 1889 564976715 564976910 1.820000e-26 130.0
11 TraesCS4A01G173000 chr4D 92.735 468 22 10 1800 2260 245042987 245043449 0.000000e+00 665.0
12 TraesCS4A01G173000 chr7B 90.543 497 34 11 1773 2259 403629653 403630146 0.000000e+00 645.0
13 TraesCS4A01G173000 chr7B 90.543 497 33 12 1773 2259 403770848 403771340 0.000000e+00 645.0
14 TraesCS4A01G173000 chr7B 85.915 142 17 3 992 1132 389689918 389690057 5.030000e-32 148.0
15 TraesCS4A01G173000 chr7B 90.291 103 9 1 1294 1395 287701447 287701549 1.410000e-27 134.0
16 TraesCS4A01G173000 chr7B 80.147 136 27 0 997 1132 448438597 448438732 3.970000e-18 102.0
17 TraesCS4A01G173000 chr6A 90.323 496 40 6 1772 2261 460409390 460408897 0.000000e+00 643.0
18 TraesCS4A01G173000 chr6A 80.845 710 104 24 1 693 277815410 277816104 1.540000e-146 529.0
19 TraesCS4A01G173000 chr6A 95.238 84 4 0 997 1080 130782448 130782365 1.410000e-27 134.0
20 TraesCS4A01G173000 chr6A 89.286 56 6 0 1715 1770 491611057 491611112 1.120000e-08 71.3
21 TraesCS4A01G173000 chr6A 89.286 56 6 0 1715 1770 491639923 491639978 1.120000e-08 71.3
22 TraesCS4A01G173000 chr1A 89.824 511 39 11 1760 2261 296965745 296966251 0.000000e+00 643.0
23 TraesCS4A01G173000 chr1A 87.654 162 19 1 1238 1398 324622088 324621927 1.070000e-43 187.0
24 TraesCS4A01G173000 chr1A 89.231 130 14 0 1114 1243 324719783 324719654 1.800000e-36 163.0
25 TraesCS4A01G173000 chr7D 81.537 807 120 23 2 797 299573949 299574737 2.450000e-179 638.0
26 TraesCS4A01G173000 chr7D 80.148 811 104 38 2 799 104774752 104773986 9.130000e-154 553.0
27 TraesCS4A01G173000 chr7D 82.166 314 40 10 1388 1688 339863090 339863400 2.880000e-64 255.0
28 TraesCS4A01G173000 chr2B 85.959 584 66 12 2 577 229508500 229509075 5.340000e-171 610.0
29 TraesCS4A01G173000 chr3B 82.779 691 94 19 2 677 459530976 459530296 5.380000e-166 593.0
30 TraesCS4A01G173000 chr3B 81.223 687 107 17 1 677 376866123 376866797 3.310000e-148 534.0
31 TraesCS4A01G173000 chr3B 84.921 126 16 3 1271 1395 299137405 299137528 8.480000e-25 124.0
32 TraesCS4A01G173000 chr3D 84.385 602 75 16 1 592 250797635 250798227 7.000000e-160 573.0
33 TraesCS4A01G173000 chr6B 82.909 667 82 23 21 677 535436063 535435419 2.520000e-159 571.0
34 TraesCS4A01G173000 chr4B 82.164 684 90 24 1 672 557519400 557520063 1.960000e-155 558.0
35 TraesCS4A01G173000 chr4B 95.238 84 4 0 997 1080 78729111 78729194 1.410000e-27 134.0
36 TraesCS4A01G173000 chr4B 95.238 84 4 0 997 1080 78737197 78737280 1.410000e-27 134.0
37 TraesCS4A01G173000 chr2A 91.336 277 23 1 995 1271 223270326 223270051 5.890000e-101 377.0
38 TraesCS4A01G173000 chr2A 83.571 280 45 1 1114 1392 253645188 253645467 6.190000e-66 261.0
39 TraesCS4A01G173000 chr2A 83.392 283 46 1 1114 1395 253757692 253757974 6.190000e-66 261.0
40 TraesCS4A01G173000 chr2A 84.158 101 15 1 1294 1393 98304577 98304677 1.850000e-16 97.1
41 TraesCS4A01G173000 chr2A 87.805 82 9 1 1313 1393 477065581 477065662 6.650000e-16 95.3
42 TraesCS4A01G173000 chr2A 90.000 50 3 2 1601 1648 159910413 159910462 1.870000e-06 63.9
43 TraesCS4A01G173000 chr7A 95.067 223 10 1 995 1217 286107715 286107494 1.290000e-92 350.0
44 TraesCS4A01G173000 chr7A 87.027 185 23 1 1212 1395 286046619 286046435 8.180000e-50 207.0
45 TraesCS4A01G173000 chr7A 78.409 176 17 15 1729 1892 416414601 416414435 6.650000e-16 95.3
46 TraesCS4A01G173000 chr7A 77.841 176 20 13 1729 1892 330495076 330495244 8.600000e-15 91.6
47 TraesCS4A01G173000 chr5A 79.310 261 24 13 1388 1640 412169675 412169913 3.010000e-34 156.0
48 TraesCS4A01G173000 chr5A 96.429 84 3 0 997 1080 206660249 206660166 3.030000e-29 139.0
49 TraesCS4A01G173000 chr5B 86.508 126 14 3 1271 1395 514763383 514763260 3.920000e-28 135.0
50 TraesCS4A01G173000 chr5B 76.667 180 18 15 1729 1894 484225041 484225210 6.700000e-11 78.7
51 TraesCS4A01G173000 chrUn 95.238 84 4 0 997 1080 416507375 416507458 1.410000e-27 134.0
52 TraesCS4A01G173000 chr1D 100.000 37 0 0 1659 1695 150000387 150000351 4.030000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G173000 chr4A 439768559 439770819 2260 False 4176 4176 100.000 1 2261 1 chr4A.!!$F1 2260
1 TraesCS4A01G173000 chr4A 439787026 439788153 1127 False 1400 1400 89.213 1 1121 1 chr4A.!!$F2 1120
2 TraesCS4A01G173000 chr4A 290807438 290808011 573 True 701 701 89.062 1700 2261 1 chr4A.!!$R1 561
3 TraesCS4A01G173000 chr4A 549334641 549335401 760 False 675 675 82.968 21 781 1 chr4A.!!$F3 760
4 TraesCS4A01G173000 chr6D 205057106 205057664 558 True 845 845 93.961 1702 2261 1 chr6D.!!$R3 559
5 TraesCS4A01G173000 chr6D 205049357 205049917 560 True 819 819 93.085 1702 2260 1 chr6D.!!$R2 558
6 TraesCS4A01G173000 chr6A 277815410 277816104 694 False 529 529 80.845 1 693 1 chr6A.!!$F1 692
7 TraesCS4A01G173000 chr1A 296965745 296966251 506 False 643 643 89.824 1760 2261 1 chr1A.!!$F1 501
8 TraesCS4A01G173000 chr7D 299573949 299574737 788 False 638 638 81.537 2 797 1 chr7D.!!$F1 795
9 TraesCS4A01G173000 chr7D 104773986 104774752 766 True 553 553 80.148 2 799 1 chr7D.!!$R1 797
10 TraesCS4A01G173000 chr2B 229508500 229509075 575 False 610 610 85.959 2 577 1 chr2B.!!$F1 575
11 TraesCS4A01G173000 chr3B 459530296 459530976 680 True 593 593 82.779 2 677 1 chr3B.!!$R1 675
12 TraesCS4A01G173000 chr3B 376866123 376866797 674 False 534 534 81.223 1 677 1 chr3B.!!$F2 676
13 TraesCS4A01G173000 chr3D 250797635 250798227 592 False 573 573 84.385 1 592 1 chr3D.!!$F1 591
14 TraesCS4A01G173000 chr6B 535435419 535436063 644 True 571 571 82.909 21 677 1 chr6B.!!$R1 656
15 TraesCS4A01G173000 chr4B 557519400 557520063 663 False 558 558 82.164 1 672 1 chr4B.!!$F3 671

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
872 956 0.110486 ATCGAATGGGGGTACATGGC 59.89 55.0 0.0 0.0 0.0 4.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1686 1770 0.105039 CTAGCCGTTTGCCTCCTAGG 59.895 60.0 0.82 0.82 42.71 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 61 3.553917 CGGAACAACAAACAACAATTCCC 59.446 43.478 0.00 0.00 32.20 3.97
194 206 2.283298 ACATGAGCCTGTTATGAAGCG 58.717 47.619 0.00 0.00 0.00 4.68
377 405 3.599285 TTCCCACGGGTCGATGCAC 62.599 63.158 1.07 0.00 36.47 4.57
457 495 6.734137 TCATACAACAAAAGCATTCGTTCTT 58.266 32.000 0.00 0.00 0.00 2.52
485 524 1.603802 CGTCTCGGCGGTTATACCTTA 59.396 52.381 7.21 0.00 35.66 2.69
570 639 4.157289 GGACGGTCATAGTGAAAGTAGTGA 59.843 45.833 10.76 0.00 0.00 3.41
593 664 4.500603 TCACGAGTTGAAGAGGAACTAC 57.499 45.455 0.00 0.00 41.55 2.73
714 789 3.695060 GAGTCATCGGTAGAGGAACTTGA 59.305 47.826 0.00 0.00 41.55 3.02
754 829 0.530870 GGCGCATCTGAAGGGTACTC 60.531 60.000 10.83 0.00 0.00 2.59
756 831 0.738975 CGCATCTGAAGGGTACTCGA 59.261 55.000 0.00 0.00 0.00 4.04
786 861 2.351418 CGTAGTCGTACATGGGTCGTAA 59.649 50.000 0.00 0.00 0.00 3.18
799 874 2.931969 GGGTCGTAAAGGTATTTGACGG 59.068 50.000 0.00 0.00 34.38 4.79
800 875 2.931969 GGTCGTAAAGGTATTTGACGGG 59.068 50.000 0.00 0.00 34.38 5.28
801 876 3.588955 GTCGTAAAGGTATTTGACGGGT 58.411 45.455 0.00 0.00 34.38 5.28
802 877 3.614176 GTCGTAAAGGTATTTGACGGGTC 59.386 47.826 0.00 0.00 34.38 4.46
803 878 2.599973 CGTAAAGGTATTTGACGGGTCG 59.400 50.000 0.00 0.00 0.00 4.79
804 879 2.845363 AAAGGTATTTGACGGGTCGT 57.155 45.000 0.00 0.00 45.10 4.34
805 880 3.959535 AAAGGTATTTGACGGGTCGTA 57.040 42.857 0.00 0.00 41.37 3.43
807 882 2.726821 AGGTATTTGACGGGTCGTAGA 58.273 47.619 0.00 0.00 41.37 2.59
808 883 2.686915 AGGTATTTGACGGGTCGTAGAG 59.313 50.000 0.00 0.00 41.37 2.43
809 884 2.223665 GGTATTTGACGGGTCGTAGAGG 60.224 54.545 0.00 0.00 41.37 3.69
810 885 1.553706 ATTTGACGGGTCGTAGAGGT 58.446 50.000 0.00 0.00 41.37 3.85
812 887 2.425143 TTGACGGGTCGTAGAGGTAT 57.575 50.000 0.00 0.00 41.37 2.73
813 888 2.425143 TGACGGGTCGTAGAGGTATT 57.575 50.000 0.00 0.00 41.37 1.89
814 889 2.726821 TGACGGGTCGTAGAGGTATTT 58.273 47.619 0.00 0.00 41.37 1.40
815 890 2.424601 TGACGGGTCGTAGAGGTATTTG 59.575 50.000 0.00 0.00 41.37 2.32
817 892 2.424956 ACGGGTCGTAGAGGTATTTGAC 59.575 50.000 0.00 0.00 38.73 3.18
819 894 2.424956 GGGTCGTAGAGGTATTTGACGT 59.575 50.000 0.00 0.00 36.95 4.34
820 895 3.488216 GGGTCGTAGAGGTATTTGACGTC 60.488 52.174 9.11 9.11 42.24 4.34
821 896 3.488216 GGTCGTAGAGGTATTTGACGTCC 60.488 52.174 14.12 0.00 42.80 4.79
822 897 3.127548 GTCGTAGAGGTATTTGACGTCCA 59.872 47.826 14.12 0.00 42.80 4.02
842 925 2.663196 GGCGTCCAGGTACTTGCT 59.337 61.111 0.00 0.00 34.60 3.91
854 938 3.084786 GGTACTTGCTGGCTTGAAGAAT 58.915 45.455 0.00 0.00 0.00 2.40
872 956 0.110486 ATCGAATGGGGGTACATGGC 59.890 55.000 0.00 0.00 0.00 4.40
890 974 1.991430 CGTTTCGGATGCAGTCTCG 59.009 57.895 0.00 0.00 0.00 4.04
893 977 0.601057 TTTCGGATGCAGTCTCGTCA 59.399 50.000 0.00 0.00 0.00 4.35
900 984 0.969149 TGCAGTCTCGTCATTCCTGT 59.031 50.000 0.00 0.00 0.00 4.00
903 987 2.924290 GCAGTCTCGTCATTCCTGTTAC 59.076 50.000 0.00 0.00 0.00 2.50
920 1004 1.405872 TACGATGGCCTTGGTACGAT 58.594 50.000 3.32 0.00 0.00 3.73
936 1020 1.535462 ACGATCCAAAACAAAGCCTCG 59.465 47.619 0.00 0.00 0.00 4.63
989 1073 4.780815 TGTCAGTGGAGACAAATTGAACT 58.219 39.130 0.00 0.00 44.92 3.01
995 1079 3.017442 GGAGACAAATTGAACTAGGCCC 58.983 50.000 0.00 0.00 0.00 5.80
997 1081 1.743394 GACAAATTGAACTAGGCCCGG 59.257 52.381 0.00 0.00 0.00 5.73
1032 1116 4.717313 GGTTCCCGAGGTGGTGCC 62.717 72.222 0.00 0.00 35.15 5.01
1067 1151 1.741032 GTGCAGCAGGACAGAGCTC 60.741 63.158 5.27 5.27 39.50 4.09
1070 1154 1.153862 CAGCAGGACAGAGCTCGAC 60.154 63.158 8.37 3.73 39.50 4.20
1119 1203 4.918201 GGCCCGCGAATGGAGGAG 62.918 72.222 8.23 0.00 37.92 3.69
1120 1204 4.918201 GCCCGCGAATGGAGGAGG 62.918 72.222 8.23 0.00 37.92 4.30
1121 1205 3.470888 CCCGCGAATGGAGGAGGT 61.471 66.667 8.23 0.00 37.92 3.85
1122 1206 2.107141 CCGCGAATGGAGGAGGTC 59.893 66.667 8.23 0.00 37.92 3.85
1123 1207 2.278857 CGCGAATGGAGGAGGTCG 60.279 66.667 0.00 0.00 36.59 4.79
1124 1208 2.771639 CGCGAATGGAGGAGGTCGA 61.772 63.158 0.00 0.00 35.54 4.20
1125 1209 1.227002 GCGAATGGAGGAGGTCGAC 60.227 63.158 7.13 7.13 35.54 4.20
1126 1210 1.064296 CGAATGGAGGAGGTCGACG 59.936 63.158 9.92 0.00 35.54 5.12
1127 1211 1.374343 CGAATGGAGGAGGTCGACGA 61.374 60.000 9.92 0.00 35.54 4.20
1128 1212 0.382515 GAATGGAGGAGGTCGACGAG 59.617 60.000 9.92 0.00 0.00 4.18
1129 1213 1.038130 AATGGAGGAGGTCGACGAGG 61.038 60.000 9.92 0.00 0.00 4.63
1130 1214 2.045143 GGAGGAGGTCGACGAGGT 60.045 66.667 9.92 0.00 0.00 3.85
1131 1215 2.408241 GGAGGAGGTCGACGAGGTG 61.408 68.421 9.92 0.00 0.00 4.00
1132 1216 1.674980 GAGGAGGTCGACGAGGTGT 60.675 63.158 9.92 0.00 0.00 4.16
1133 1217 1.228490 AGGAGGTCGACGAGGTGTT 60.228 57.895 9.92 0.00 0.00 3.32
1134 1218 1.080705 GGAGGTCGACGAGGTGTTG 60.081 63.158 9.92 0.00 0.00 3.33
1135 1219 1.733399 GAGGTCGACGAGGTGTTGC 60.733 63.158 9.92 0.00 31.43 4.17
1136 1220 3.103911 GGTCGACGAGGTGTTGCG 61.104 66.667 9.92 0.00 31.43 4.85
1137 1221 3.764049 GTCGACGAGGTGTTGCGC 61.764 66.667 0.00 0.00 31.43 6.09
1156 1240 2.281345 GCGATGGCCTCAGGATGG 60.281 66.667 3.32 0.00 36.16 3.51
1162 1246 2.203451 GCCTCAGGATGGCCATGG 60.203 66.667 26.56 18.92 44.32 3.66
1163 1247 2.203451 CCTCAGGATGGCCATGGC 60.203 66.667 29.47 29.47 41.06 4.40
1164 1248 2.593725 CTCAGGATGGCCATGGCG 60.594 66.667 29.90 15.34 43.06 5.69
1165 1249 4.881440 TCAGGATGGCCATGGCGC 62.881 66.667 29.90 22.24 43.06 6.53
1215 1299 3.676605 TCGTGCGCGAGGAAGGAA 61.677 61.111 20.10 0.00 42.81 3.36
1216 1300 3.479269 CGTGCGCGAGGAAGGAAC 61.479 66.667 16.08 0.00 41.33 3.62
1217 1301 2.357034 GTGCGCGAGGAAGGAACA 60.357 61.111 12.10 0.00 0.00 3.18
1218 1302 2.357034 TGCGCGAGGAAGGAACAC 60.357 61.111 12.10 0.00 0.00 3.32
1219 1303 2.357034 GCGCGAGGAAGGAACACA 60.357 61.111 12.10 0.00 0.00 3.72
1220 1304 1.959226 GCGCGAGGAAGGAACACAA 60.959 57.895 12.10 0.00 0.00 3.33
1221 1305 1.901650 GCGCGAGGAAGGAACACAAG 61.902 60.000 12.10 0.00 0.00 3.16
1230 1314 1.722034 AGGAACACAAGCAGAGGAGA 58.278 50.000 0.00 0.00 0.00 3.71
1231 1315 1.622811 AGGAACACAAGCAGAGGAGAG 59.377 52.381 0.00 0.00 0.00 3.20
1232 1316 1.338579 GGAACACAAGCAGAGGAGAGG 60.339 57.143 0.00 0.00 0.00 3.69
1233 1317 1.620819 GAACACAAGCAGAGGAGAGGA 59.379 52.381 0.00 0.00 0.00 3.71
1234 1318 1.722034 ACACAAGCAGAGGAGAGGAA 58.278 50.000 0.00 0.00 0.00 3.36
1235 1319 1.622811 ACACAAGCAGAGGAGAGGAAG 59.377 52.381 0.00 0.00 0.00 3.46
1236 1320 1.898472 CACAAGCAGAGGAGAGGAAGA 59.102 52.381 0.00 0.00 0.00 2.87
1237 1321 2.301296 CACAAGCAGAGGAGAGGAAGAA 59.699 50.000 0.00 0.00 0.00 2.52
1238 1322 2.566724 ACAAGCAGAGGAGAGGAAGAAG 59.433 50.000 0.00 0.00 0.00 2.85
1239 1323 1.864669 AGCAGAGGAGAGGAAGAAGG 58.135 55.000 0.00 0.00 0.00 3.46
1240 1324 0.177836 GCAGAGGAGAGGAAGAAGGC 59.822 60.000 0.00 0.00 0.00 4.35
1241 1325 1.566211 CAGAGGAGAGGAAGAAGGCA 58.434 55.000 0.00 0.00 0.00 4.75
1242 1326 1.206849 CAGAGGAGAGGAAGAAGGCAC 59.793 57.143 0.00 0.00 0.00 5.01
1243 1327 0.539518 GAGGAGAGGAAGAAGGCACC 59.460 60.000 0.00 0.00 0.00 5.01
1244 1328 0.178891 AGGAGAGGAAGAAGGCACCA 60.179 55.000 0.00 0.00 0.00 4.17
1245 1329 0.035915 GGAGAGGAAGAAGGCACCAC 60.036 60.000 0.00 0.00 0.00 4.16
1246 1330 0.390472 GAGAGGAAGAAGGCACCACG 60.390 60.000 0.00 0.00 0.00 4.94
1247 1331 1.376037 GAGGAAGAAGGCACCACGG 60.376 63.158 0.00 0.00 0.00 4.94
1248 1332 3.056328 GGAAGAAGGCACCACGGC 61.056 66.667 0.00 0.00 41.61 5.68
1269 1353 4.522971 CGGAGGTAGAGGCAAAGC 57.477 61.111 0.00 0.00 0.00 3.51
1270 1354 1.519455 CGGAGGTAGAGGCAAAGCG 60.519 63.158 0.00 0.00 0.00 4.68
1271 1355 1.153349 GGAGGTAGAGGCAAAGCGG 60.153 63.158 0.00 0.00 0.00 5.52
1272 1356 1.153349 GAGGTAGAGGCAAAGCGGG 60.153 63.158 0.00 0.00 0.00 6.13
1273 1357 1.612442 AGGTAGAGGCAAAGCGGGA 60.612 57.895 0.00 0.00 0.00 5.14
1274 1358 0.983378 AGGTAGAGGCAAAGCGGGAT 60.983 55.000 0.00 0.00 0.00 3.85
1275 1359 0.815615 GGTAGAGGCAAAGCGGGATG 60.816 60.000 0.00 0.00 0.00 3.51
1276 1360 0.815615 GTAGAGGCAAAGCGGGATGG 60.816 60.000 0.00 0.00 0.00 3.51
1277 1361 2.608970 TAGAGGCAAAGCGGGATGGC 62.609 60.000 0.00 0.00 42.00 4.40
1279 1363 2.124320 GGCAAAGCGGGATGGCTA 60.124 61.111 0.00 0.00 43.93 3.93
1280 1364 2.189499 GGCAAAGCGGGATGGCTAG 61.189 63.158 0.00 0.00 43.93 3.42
1281 1365 1.153168 GCAAAGCGGGATGGCTAGA 60.153 57.895 0.00 0.00 43.93 2.43
1282 1366 0.748005 GCAAAGCGGGATGGCTAGAA 60.748 55.000 0.00 0.00 43.93 2.10
1283 1367 1.303309 CAAAGCGGGATGGCTAGAAG 58.697 55.000 0.00 0.00 43.93 2.85
1284 1368 0.464554 AAAGCGGGATGGCTAGAAGC 60.465 55.000 0.00 0.00 43.93 3.86
1293 1377 2.501610 GCTAGAAGCCGGGGTCAG 59.498 66.667 2.18 0.00 34.48 3.51
1294 1378 2.501610 CTAGAAGCCGGGGTCAGC 59.498 66.667 2.18 0.00 0.00 4.26
1295 1379 3.432051 CTAGAAGCCGGGGTCAGCG 62.432 68.421 2.18 0.00 0.00 5.18
1302 1386 4.796231 CGGGGTCAGCGGACGAAG 62.796 72.222 10.95 0.77 45.28 3.79
1304 1388 4.373116 GGGTCAGCGGACGAAGCA 62.373 66.667 10.95 0.00 45.28 3.91
1305 1389 2.125512 GGTCAGCGGACGAAGCAT 60.126 61.111 10.95 0.00 45.28 3.79
1306 1390 2.167861 GGTCAGCGGACGAAGCATC 61.168 63.158 10.95 0.00 45.28 3.91
1307 1391 1.446099 GTCAGCGGACGAAGCATCA 60.446 57.895 0.00 0.00 37.01 3.07
1308 1392 0.807667 GTCAGCGGACGAAGCATCAT 60.808 55.000 0.00 0.00 37.01 2.45
1309 1393 0.108186 TCAGCGGACGAAGCATCATT 60.108 50.000 0.00 0.00 37.01 2.57
1310 1394 0.027194 CAGCGGACGAAGCATCATTG 59.973 55.000 0.00 0.00 37.01 2.82
1311 1395 1.091771 AGCGGACGAAGCATCATTGG 61.092 55.000 0.00 0.00 37.01 3.16
1312 1396 2.016961 CGGACGAAGCATCATTGGG 58.983 57.895 0.00 0.00 0.00 4.12
1313 1397 1.729881 GGACGAAGCATCATTGGGC 59.270 57.895 0.00 0.00 0.00 5.36
1314 1398 1.031571 GGACGAAGCATCATTGGGCA 61.032 55.000 0.00 0.00 0.00 5.36
1315 1399 0.810648 GACGAAGCATCATTGGGCAA 59.189 50.000 0.00 0.00 0.00 4.52
1316 1400 0.527565 ACGAAGCATCATTGGGCAAC 59.472 50.000 0.00 0.00 0.00 4.17
1317 1401 0.523968 CGAAGCATCATTGGGCAACG 60.524 55.000 4.48 5.37 37.60 4.10
1318 1402 0.810648 GAAGCATCATTGGGCAACGA 59.189 50.000 0.00 0.00 37.60 3.85
1319 1403 0.527565 AAGCATCATTGGGCAACGAC 59.472 50.000 0.00 0.00 37.60 4.34
1320 1404 1.226379 GCATCATTGGGCAACGACG 60.226 57.895 0.00 0.00 37.60 5.12
1321 1405 1.429021 CATCATTGGGCAACGACGG 59.571 57.895 0.00 0.00 37.60 4.79
1322 1406 1.002624 ATCATTGGGCAACGACGGT 60.003 52.632 0.00 0.00 37.60 4.83
1323 1407 1.024579 ATCATTGGGCAACGACGGTC 61.025 55.000 0.00 0.00 37.60 4.79
1324 1408 1.963855 CATTGGGCAACGACGGTCA 60.964 57.895 9.10 0.00 37.60 4.02
1325 1409 1.228003 ATTGGGCAACGACGGTCAA 60.228 52.632 9.10 0.00 37.60 3.18
1326 1410 1.234615 ATTGGGCAACGACGGTCAAG 61.235 55.000 9.10 0.00 37.60 3.02
1327 1411 3.047877 GGGCAACGACGGTCAAGG 61.048 66.667 9.10 0.00 37.60 3.61
1328 1412 3.047877 GGCAACGACGGTCAAGGG 61.048 66.667 9.10 0.00 0.00 3.95
1329 1413 2.029964 GCAACGACGGTCAAGGGA 59.970 61.111 9.10 0.00 0.00 4.20
1330 1414 2.027625 GCAACGACGGTCAAGGGAG 61.028 63.158 9.10 0.00 0.00 4.30
1331 1415 1.374252 CAACGACGGTCAAGGGAGG 60.374 63.158 9.10 0.00 0.00 4.30
1332 1416 3.236003 AACGACGGTCAAGGGAGGC 62.236 63.158 9.10 0.00 0.00 4.70
1333 1417 4.796231 CGACGGTCAAGGGAGGCG 62.796 72.222 9.10 0.00 0.00 5.52
1369 1453 4.180946 CGTCGAGCACGGGAGGAG 62.181 72.222 3.11 0.00 45.46 3.69
1370 1454 2.750637 GTCGAGCACGGGAGGAGA 60.751 66.667 3.11 0.00 40.21 3.71
1371 1455 2.438614 TCGAGCACGGGAGGAGAG 60.439 66.667 3.11 0.00 40.21 3.20
1372 1456 3.522731 CGAGCACGGGAGGAGAGG 61.523 72.222 0.00 0.00 35.72 3.69
1373 1457 3.844090 GAGCACGGGAGGAGAGGC 61.844 72.222 0.00 0.00 0.00 4.70
1374 1458 4.704103 AGCACGGGAGGAGAGGCA 62.704 66.667 0.00 0.00 0.00 4.75
1375 1459 3.706373 GCACGGGAGGAGAGGCAA 61.706 66.667 0.00 0.00 0.00 4.52
1376 1460 2.581354 CACGGGAGGAGAGGCAAG 59.419 66.667 0.00 0.00 0.00 4.01
1377 1461 2.685380 ACGGGAGGAGAGGCAAGG 60.685 66.667 0.00 0.00 0.00 3.61
1378 1462 4.168291 CGGGAGGAGAGGCAAGGC 62.168 72.222 0.00 0.00 0.00 4.35
1389 1473 1.433471 GGCAAGGCCGTGATTAAGC 59.567 57.895 23.82 5.29 39.62 3.09
1390 1474 1.312371 GGCAAGGCCGTGATTAAGCA 61.312 55.000 23.82 0.00 39.62 3.91
1391 1475 0.099436 GCAAGGCCGTGATTAAGCAG 59.901 55.000 23.82 0.00 0.00 4.24
1392 1476 0.099436 CAAGGCCGTGATTAAGCAGC 59.901 55.000 14.14 0.00 0.00 5.25
1393 1477 1.369091 AAGGCCGTGATTAAGCAGCG 61.369 55.000 0.00 1.18 0.00 5.18
1394 1478 2.709475 GCCGTGATTAAGCAGCGG 59.291 61.111 22.14 22.14 44.60 5.52
1395 1479 2.709475 CCGTGATTAAGCAGCGGC 59.291 61.111 17.37 0.00 41.61 6.53
1422 1506 4.504596 GCGTGGCCATGGGGATCA 62.505 66.667 26.22 0.00 35.59 2.92
1423 1507 2.203252 CGTGGCCATGGGGATCAG 60.203 66.667 17.90 0.00 35.59 2.90
1424 1508 2.196776 GTGGCCATGGGGATCAGG 59.803 66.667 9.72 0.00 35.59 3.86
1425 1509 3.824425 TGGCCATGGGGATCAGGC 61.824 66.667 15.13 0.00 46.28 4.85
1427 1511 2.520260 GCCATGGGGATCAGGCAC 60.520 66.667 15.13 0.00 46.26 5.01
1428 1512 2.203252 CCATGGGGATCAGGCACG 60.203 66.667 2.85 0.00 35.59 5.34
1429 1513 2.203252 CATGGGGATCAGGCACGG 60.203 66.667 0.00 0.00 0.00 4.94
1430 1514 4.195334 ATGGGGATCAGGCACGGC 62.195 66.667 0.00 0.00 0.00 5.68
1442 1526 4.323477 CACGGCGTGGGGGAAGAA 62.323 66.667 31.19 0.00 0.00 2.52
1443 1527 4.016706 ACGGCGTGGGGGAAGAAG 62.017 66.667 13.76 0.00 0.00 2.85
1444 1528 3.702048 CGGCGTGGGGGAAGAAGA 61.702 66.667 0.00 0.00 0.00 2.87
1445 1529 2.754375 GGCGTGGGGGAAGAAGAA 59.246 61.111 0.00 0.00 0.00 2.52
1446 1530 1.074248 GGCGTGGGGGAAGAAGAAA 59.926 57.895 0.00 0.00 0.00 2.52
1447 1531 1.241990 GGCGTGGGGGAAGAAGAAAC 61.242 60.000 0.00 0.00 0.00 2.78
1448 1532 1.241990 GCGTGGGGGAAGAAGAAACC 61.242 60.000 0.00 0.00 0.00 3.27
1449 1533 0.109723 CGTGGGGGAAGAAGAAACCA 59.890 55.000 0.00 0.00 0.00 3.67
1450 1534 1.882352 CGTGGGGGAAGAAGAAACCAG 60.882 57.143 0.00 0.00 0.00 4.00
1451 1535 0.777446 TGGGGGAAGAAGAAACCAGG 59.223 55.000 0.00 0.00 0.00 4.45
1452 1536 0.039764 GGGGGAAGAAGAAACCAGGG 59.960 60.000 0.00 0.00 0.00 4.45
1453 1537 0.039764 GGGGAAGAAGAAACCAGGGG 59.960 60.000 0.00 0.00 0.00 4.79
1454 1538 1.073098 GGGAAGAAGAAACCAGGGGA 58.927 55.000 0.00 0.00 0.00 4.81
1455 1539 1.427753 GGGAAGAAGAAACCAGGGGAA 59.572 52.381 0.00 0.00 0.00 3.97
1456 1540 2.555448 GGGAAGAAGAAACCAGGGGAAG 60.555 54.545 0.00 0.00 0.00 3.46
1457 1541 2.555448 GGAAGAAGAAACCAGGGGAAGG 60.555 54.545 0.00 0.00 0.00 3.46
1458 1542 0.405973 AGAAGAAACCAGGGGAAGGC 59.594 55.000 0.00 0.00 0.00 4.35
1459 1543 0.960861 GAAGAAACCAGGGGAAGGCG 60.961 60.000 0.00 0.00 0.00 5.52
1460 1544 1.716028 AAGAAACCAGGGGAAGGCGT 61.716 55.000 0.00 0.00 0.00 5.68
1461 1545 1.971695 GAAACCAGGGGAAGGCGTG 60.972 63.158 0.00 0.00 0.00 5.34
1462 1546 3.507377 AAACCAGGGGAAGGCGTGG 62.507 63.158 0.00 0.00 36.05 4.94
1464 1548 4.410400 CCAGGGGAAGGCGTGGTC 62.410 72.222 0.00 0.00 0.00 4.02
1465 1549 3.636231 CAGGGGAAGGCGTGGTCA 61.636 66.667 0.00 0.00 0.00 4.02
1466 1550 3.637273 AGGGGAAGGCGTGGTCAC 61.637 66.667 0.00 0.00 0.00 3.67
1467 1551 3.948719 GGGGAAGGCGTGGTCACA 61.949 66.667 1.90 0.00 0.00 3.58
1468 1552 2.358737 GGGAAGGCGTGGTCACAG 60.359 66.667 1.90 0.00 0.00 3.66
1469 1553 2.358737 GGAAGGCGTGGTCACAGG 60.359 66.667 1.90 0.00 35.65 4.00
1470 1554 2.426023 GAAGGCGTGGTCACAGGT 59.574 61.111 1.90 0.00 35.03 4.00
1471 1555 1.961277 GAAGGCGTGGTCACAGGTG 60.961 63.158 1.90 0.00 35.03 4.00
1472 1556 3.476031 AAGGCGTGGTCACAGGTGG 62.476 63.158 0.00 0.00 35.03 4.61
1473 1557 4.250305 GGCGTGGTCACAGGTGGT 62.250 66.667 0.00 0.00 35.03 4.16
1474 1558 2.665185 GCGTGGTCACAGGTGGTC 60.665 66.667 0.00 0.00 35.03 4.02
1475 1559 3.138625 CGTGGTCACAGGTGGTCT 58.861 61.111 0.00 0.00 0.00 3.85
1476 1560 1.006102 CGTGGTCACAGGTGGTCTC 60.006 63.158 0.00 0.00 0.00 3.36
1477 1561 1.371558 GTGGTCACAGGTGGTCTCC 59.628 63.158 0.00 0.00 0.00 3.71
1478 1562 2.207229 TGGTCACAGGTGGTCTCCG 61.207 63.158 0.00 0.00 0.00 4.63
1479 1563 2.657237 GTCACAGGTGGTCTCCGG 59.343 66.667 0.00 0.00 0.00 5.14
1480 1564 3.311110 TCACAGGTGGTCTCCGGC 61.311 66.667 0.00 0.00 0.00 6.13
1481 1565 4.742201 CACAGGTGGTCTCCGGCG 62.742 72.222 0.00 0.00 0.00 6.46
1482 1566 4.988716 ACAGGTGGTCTCCGGCGA 62.989 66.667 9.30 0.00 0.00 5.54
1483 1567 4.436998 CAGGTGGTCTCCGGCGAC 62.437 72.222 16.40 16.40 0.00 5.19
1495 1579 4.436998 GGCGACCGGAGTCTGGTG 62.437 72.222 28.77 19.65 40.63 4.17
1496 1580 4.436998 GCGACCGGAGTCTGGTGG 62.437 72.222 28.77 26.56 40.63 4.61
1497 1581 3.760035 CGACCGGAGTCTGGTGGG 61.760 72.222 28.77 15.56 40.63 4.61
1498 1582 3.391382 GACCGGAGTCTGGTGGGG 61.391 72.222 28.77 0.00 40.63 4.96
1499 1583 4.250170 ACCGGAGTCTGGTGGGGT 62.250 66.667 23.37 0.00 38.60 4.95
1500 1584 3.391382 CCGGAGTCTGGTGGGGTC 61.391 72.222 10.15 0.00 0.00 4.46
1501 1585 2.603473 CGGAGTCTGGTGGGGTCA 60.603 66.667 0.00 0.00 0.00 4.02
1502 1586 2.650116 CGGAGTCTGGTGGGGTCAG 61.650 68.421 0.00 0.00 0.00 3.51
1503 1587 2.294078 GGAGTCTGGTGGGGTCAGG 61.294 68.421 0.00 0.00 33.36 3.86
1504 1588 2.930562 AGTCTGGTGGGGTCAGGC 60.931 66.667 0.00 0.00 37.14 4.85
1505 1589 4.394712 GTCTGGTGGGGTCAGGCG 62.395 72.222 0.00 0.00 33.36 5.52
1515 1599 4.980805 GTCAGGCGGCGGTTCACA 62.981 66.667 9.78 0.00 0.00 3.58
1516 1600 4.015406 TCAGGCGGCGGTTCACAT 62.015 61.111 9.78 0.00 0.00 3.21
1517 1601 3.499737 CAGGCGGCGGTTCACATC 61.500 66.667 9.78 0.00 0.00 3.06
1518 1602 4.015406 AGGCGGCGGTTCACATCA 62.015 61.111 9.78 0.00 0.00 3.07
1519 1603 3.499737 GGCGGCGGTTCACATCAG 61.500 66.667 9.78 0.00 0.00 2.90
1520 1604 3.499737 GCGGCGGTTCACATCAGG 61.500 66.667 9.78 0.00 0.00 3.86
1521 1605 2.819595 CGGCGGTTCACATCAGGG 60.820 66.667 0.00 0.00 0.00 4.45
1522 1606 2.668632 GGCGGTTCACATCAGGGA 59.331 61.111 0.00 0.00 0.00 4.20
1523 1607 1.450312 GGCGGTTCACATCAGGGAG 60.450 63.158 0.00 0.00 0.00 4.30
1524 1608 1.450312 GCGGTTCACATCAGGGAGG 60.450 63.158 0.00 0.00 0.00 4.30
1525 1609 1.450312 CGGTTCACATCAGGGAGGC 60.450 63.158 0.00 0.00 0.00 4.70
1526 1610 1.077429 GGTTCACATCAGGGAGGCC 60.077 63.158 0.00 0.00 0.00 5.19
1527 1611 1.685224 GTTCACATCAGGGAGGCCA 59.315 57.895 5.01 0.00 0.00 5.36
1528 1612 0.257039 GTTCACATCAGGGAGGCCAT 59.743 55.000 5.01 0.00 0.00 4.40
1529 1613 0.256752 TTCACATCAGGGAGGCCATG 59.743 55.000 5.01 0.30 36.56 3.66
1530 1614 1.152819 CACATCAGGGAGGCCATGG 60.153 63.158 7.63 7.63 35.84 3.66
1531 1615 2.203451 CATCAGGGAGGCCATGGC 60.203 66.667 29.47 29.47 35.84 4.40
1532 1616 3.882326 ATCAGGGAGGCCATGGCG 61.882 66.667 29.90 15.34 43.06 5.69
1540 1624 4.615815 GGCCATGGCGCTCGAGAT 62.616 66.667 29.90 0.00 43.06 2.75
1541 1625 3.344215 GCCATGGCGCTCGAGATG 61.344 66.667 23.48 10.71 0.00 2.90
1542 1626 3.344215 CCATGGCGCTCGAGATGC 61.344 66.667 18.75 18.64 0.00 3.91
1543 1627 2.279985 CATGGCGCTCGAGATGCT 60.280 61.111 23.64 7.75 0.00 3.79
1544 1628 2.028778 ATGGCGCTCGAGATGCTC 59.971 61.111 23.64 16.31 0.00 4.26
1545 1629 2.497173 ATGGCGCTCGAGATGCTCT 61.497 57.895 23.64 12.33 0.00 4.09
1546 1630 2.354539 GGCGCTCGAGATGCTCTC 60.355 66.667 23.64 8.86 40.06 3.20
1547 1631 2.721231 GCGCTCGAGATGCTCTCT 59.279 61.111 18.75 1.14 41.26 3.10
1548 1632 1.370414 GCGCTCGAGATGCTCTCTC 60.370 63.158 18.75 8.59 45.98 3.20
1555 1639 1.620822 GAGATGCTCTCTCTCCCTCC 58.379 60.000 8.96 0.00 45.97 4.30
1556 1640 0.188342 AGATGCTCTCTCTCCCTCCC 59.812 60.000 0.00 0.00 0.00 4.30
1557 1641 0.188342 GATGCTCTCTCTCCCTCCCT 59.812 60.000 0.00 0.00 0.00 4.20
1558 1642 0.188342 ATGCTCTCTCTCCCTCCCTC 59.812 60.000 0.00 0.00 0.00 4.30
1559 1643 1.152546 GCTCTCTCTCCCTCCCTCC 60.153 68.421 0.00 0.00 0.00 4.30
1560 1644 1.541672 CTCTCTCTCCCTCCCTCCC 59.458 68.421 0.00 0.00 0.00 4.30
1561 1645 0.998945 CTCTCTCTCCCTCCCTCCCT 60.999 65.000 0.00 0.00 0.00 4.20
1562 1646 0.996762 TCTCTCTCCCTCCCTCCCTC 60.997 65.000 0.00 0.00 0.00 4.30
1563 1647 0.998945 CTCTCTCCCTCCCTCCCTCT 60.999 65.000 0.00 0.00 0.00 3.69
1564 1648 0.996762 TCTCTCCCTCCCTCCCTCTC 60.997 65.000 0.00 0.00 0.00 3.20
1565 1649 0.998945 CTCTCCCTCCCTCCCTCTCT 60.999 65.000 0.00 0.00 0.00 3.10
1566 1650 0.996762 TCTCCCTCCCTCCCTCTCTC 60.997 65.000 0.00 0.00 0.00 3.20
1567 1651 0.998945 CTCCCTCCCTCCCTCTCTCT 60.999 65.000 0.00 0.00 0.00 3.10
1568 1652 0.996762 TCCCTCCCTCCCTCTCTCTC 60.997 65.000 0.00 0.00 0.00 3.20
1569 1653 1.292941 CCCTCCCTCCCTCTCTCTCA 61.293 65.000 0.00 0.00 0.00 3.27
1570 1654 0.106217 CCTCCCTCCCTCTCTCTCAC 60.106 65.000 0.00 0.00 0.00 3.51
1571 1655 0.926293 CTCCCTCCCTCTCTCTCACT 59.074 60.000 0.00 0.00 0.00 3.41
1572 1656 0.923358 TCCCTCCCTCTCTCTCACTC 59.077 60.000 0.00 0.00 0.00 3.51
1573 1657 0.926293 CCCTCCCTCTCTCTCACTCT 59.074 60.000 0.00 0.00 0.00 3.24
1574 1658 1.133792 CCCTCCCTCTCTCTCACTCTC 60.134 61.905 0.00 0.00 0.00 3.20
1575 1659 1.563879 CCTCCCTCTCTCTCACTCTCA 59.436 57.143 0.00 0.00 0.00 3.27
1576 1660 2.643551 CTCCCTCTCTCTCACTCTCAC 58.356 57.143 0.00 0.00 0.00 3.51
1577 1661 2.239654 CTCCCTCTCTCTCACTCTCACT 59.760 54.545 0.00 0.00 0.00 3.41
1578 1662 2.238646 TCCCTCTCTCTCACTCTCACTC 59.761 54.545 0.00 0.00 0.00 3.51
1579 1663 2.239654 CCCTCTCTCTCACTCTCACTCT 59.760 54.545 0.00 0.00 0.00 3.24
1580 1664 3.535561 CCTCTCTCTCACTCTCACTCTC 58.464 54.545 0.00 0.00 0.00 3.20
1581 1665 3.198635 CCTCTCTCTCACTCTCACTCTCT 59.801 52.174 0.00 0.00 0.00 3.10
1582 1666 4.437239 CTCTCTCTCACTCTCACTCTCTC 58.563 52.174 0.00 0.00 0.00 3.20
1583 1667 4.096681 TCTCTCTCACTCTCACTCTCTCT 58.903 47.826 0.00 0.00 0.00 3.10
1584 1668 4.160439 TCTCTCTCACTCTCACTCTCTCTC 59.840 50.000 0.00 0.00 0.00 3.20
1585 1669 4.096681 TCTCTCACTCTCACTCTCTCTCT 58.903 47.826 0.00 0.00 0.00 3.10
1586 1670 4.160439 TCTCTCACTCTCACTCTCTCTCTC 59.840 50.000 0.00 0.00 0.00 3.20
1587 1671 4.096681 TCTCACTCTCACTCTCTCTCTCT 58.903 47.826 0.00 0.00 0.00 3.10
1588 1672 4.160439 TCTCACTCTCACTCTCTCTCTCTC 59.840 50.000 0.00 0.00 0.00 3.20
1589 1673 4.096681 TCACTCTCACTCTCTCTCTCTCT 58.903 47.826 0.00 0.00 0.00 3.10
1590 1674 4.160439 TCACTCTCACTCTCTCTCTCTCTC 59.840 50.000 0.00 0.00 0.00 3.20
1591 1675 4.161189 CACTCTCACTCTCTCTCTCTCTCT 59.839 50.000 0.00 0.00 0.00 3.10
1592 1676 4.161189 ACTCTCACTCTCTCTCTCTCTCTG 59.839 50.000 0.00 0.00 0.00 3.35
1593 1677 4.352893 TCTCACTCTCTCTCTCTCTCTGA 58.647 47.826 0.00 0.00 0.00 3.27
1594 1678 4.160439 TCTCACTCTCTCTCTCTCTCTGAC 59.840 50.000 0.00 0.00 0.00 3.51
1595 1679 3.119137 TCACTCTCTCTCTCTCTCTGACG 60.119 52.174 0.00 0.00 0.00 4.35
1596 1680 2.168521 ACTCTCTCTCTCTCTCTGACGG 59.831 54.545 0.00 0.00 0.00 4.79
1597 1681 1.134521 TCTCTCTCTCTCTCTGACGGC 60.135 57.143 0.00 0.00 0.00 5.68
1598 1682 0.461163 TCTCTCTCTCTCTGACGGCG 60.461 60.000 4.80 4.80 0.00 6.46
1599 1683 0.461163 CTCTCTCTCTCTGACGGCGA 60.461 60.000 16.62 0.00 0.00 5.54
1600 1684 0.036294 TCTCTCTCTCTGACGGCGAA 60.036 55.000 16.62 0.00 0.00 4.70
1601 1685 1.021202 CTCTCTCTCTGACGGCGAAT 58.979 55.000 16.62 0.00 0.00 3.34
1602 1686 1.002900 CTCTCTCTCTGACGGCGAATC 60.003 57.143 16.62 1.19 0.00 2.52
1603 1687 0.316607 CTCTCTCTGACGGCGAATCG 60.317 60.000 16.62 0.00 0.00 3.34
1604 1688 0.743345 TCTCTCTGACGGCGAATCGA 60.743 55.000 16.62 3.24 0.00 3.59
1605 1689 0.316607 CTCTCTGACGGCGAATCGAG 60.317 60.000 16.62 13.34 0.00 4.04
1606 1690 1.298713 CTCTGACGGCGAATCGAGG 60.299 63.158 16.62 0.00 0.00 4.63
1607 1691 1.715862 CTCTGACGGCGAATCGAGGA 61.716 60.000 16.62 0.96 0.00 3.71
1608 1692 1.138883 CTGACGGCGAATCGAGGAA 59.861 57.895 16.62 0.00 0.00 3.36
1609 1693 0.867753 CTGACGGCGAATCGAGGAAG 60.868 60.000 16.62 0.00 0.00 3.46
1610 1694 1.310216 TGACGGCGAATCGAGGAAGA 61.310 55.000 16.62 0.00 0.00 2.87
1611 1695 0.592754 GACGGCGAATCGAGGAAGAG 60.593 60.000 16.62 0.00 0.00 2.85
1612 1696 1.299468 CGGCGAATCGAGGAAGAGG 60.299 63.158 6.91 0.00 0.00 3.69
1613 1697 1.068250 GGCGAATCGAGGAAGAGGG 59.932 63.158 6.91 0.00 0.00 4.30
1614 1698 1.068250 GCGAATCGAGGAAGAGGGG 59.932 63.158 6.91 0.00 0.00 4.79
1615 1699 1.392710 GCGAATCGAGGAAGAGGGGA 61.393 60.000 6.91 0.00 0.00 4.81
1616 1700 1.333177 CGAATCGAGGAAGAGGGGAT 58.667 55.000 0.00 0.00 0.00 3.85
1617 1701 1.271102 CGAATCGAGGAAGAGGGGATC 59.729 57.143 0.00 0.00 0.00 3.36
1618 1702 1.271102 GAATCGAGGAAGAGGGGATCG 59.729 57.143 0.00 0.00 34.80 3.69
1619 1703 0.540830 ATCGAGGAAGAGGGGATCGG 60.541 60.000 0.00 0.00 34.29 4.18
1620 1704 2.203771 CGAGGAAGAGGGGATCGGG 61.204 68.421 0.00 0.00 0.00 5.14
1621 1705 1.075151 GAGGAAGAGGGGATCGGGT 60.075 63.158 0.00 0.00 0.00 5.28
1622 1706 1.075151 AGGAAGAGGGGATCGGGTC 60.075 63.158 0.00 0.00 0.00 4.46
1623 1707 2.499827 GGAAGAGGGGATCGGGTCG 61.500 68.421 0.00 0.00 0.00 4.79
1624 1708 1.455217 GAAGAGGGGATCGGGTCGA 60.455 63.158 0.00 0.00 41.13 4.20
1625 1709 1.455959 AAGAGGGGATCGGGTCGAG 60.456 63.158 0.00 0.00 39.91 4.04
1626 1710 2.913060 GAGGGGATCGGGTCGAGG 60.913 72.222 0.00 0.00 39.91 4.63
1627 1711 4.541648 AGGGGATCGGGTCGAGGG 62.542 72.222 0.00 0.00 39.91 4.30
1629 1713 4.534824 GGGATCGGGTCGAGGGGA 62.535 72.222 0.00 0.00 39.91 4.81
1630 1714 2.913060 GGATCGGGTCGAGGGGAG 60.913 72.222 0.00 0.00 39.91 4.30
1631 1715 2.195139 GATCGGGTCGAGGGGAGA 59.805 66.667 0.00 0.00 39.91 3.71
1632 1716 1.228613 GATCGGGTCGAGGGGAGAT 60.229 63.158 0.00 0.00 39.91 2.75
1633 1717 1.528292 GATCGGGTCGAGGGGAGATG 61.528 65.000 0.00 0.00 39.91 2.90
1634 1718 3.227276 CGGGTCGAGGGGAGATGG 61.227 72.222 0.00 0.00 0.00 3.51
1635 1719 2.844839 GGGTCGAGGGGAGATGGG 60.845 72.222 0.00 0.00 0.00 4.00
1636 1720 2.844839 GGTCGAGGGGAGATGGGG 60.845 72.222 0.00 0.00 0.00 4.96
1637 1721 2.282446 GTCGAGGGGAGATGGGGA 59.718 66.667 0.00 0.00 0.00 4.81
1638 1722 1.152226 GTCGAGGGGAGATGGGGAT 60.152 63.158 0.00 0.00 0.00 3.85
1639 1723 1.156330 TCGAGGGGAGATGGGGATC 59.844 63.158 0.00 0.00 0.00 3.36
1640 1724 2.279069 CGAGGGGAGATGGGGATCG 61.279 68.421 0.00 0.00 0.00 3.69
1641 1725 1.915769 GAGGGGAGATGGGGATCGG 60.916 68.421 0.00 0.00 0.00 4.18
1642 1726 3.641454 GGGGAGATGGGGATCGGC 61.641 72.222 0.00 0.00 0.00 5.54
1643 1727 2.527875 GGGAGATGGGGATCGGCT 60.528 66.667 0.00 0.00 0.00 5.52
1644 1728 2.746359 GGAGATGGGGATCGGCTG 59.254 66.667 0.00 0.00 0.00 4.85
1645 1729 1.838846 GGAGATGGGGATCGGCTGA 60.839 63.158 0.00 0.00 0.00 4.26
1646 1730 1.670590 GAGATGGGGATCGGCTGAG 59.329 63.158 0.00 0.00 0.00 3.35
1647 1731 2.031768 GATGGGGATCGGCTGAGC 59.968 66.667 0.98 0.98 0.00 4.26
1648 1732 3.873026 GATGGGGATCGGCTGAGCG 62.873 68.421 4.41 0.00 0.00 5.03
1651 1735 4.593864 GGGATCGGCTGAGCGGTC 62.594 72.222 11.82 7.89 0.00 4.79
1652 1736 4.933064 GGATCGGCTGAGCGGTCG 62.933 72.222 11.82 3.54 35.48 4.79
1653 1737 4.933064 GATCGGCTGAGCGGTCGG 62.933 72.222 19.07 19.07 34.85 4.79
1657 1741 4.509737 GGCTGAGCGGTCGGGTAC 62.510 72.222 23.92 8.16 0.00 3.34
1674 1758 4.533001 GGTACCTAGGGTTAAGAGGAGA 57.467 50.000 14.81 0.00 37.09 3.71
1675 1759 4.472496 GGTACCTAGGGTTAAGAGGAGAG 58.528 52.174 14.81 0.00 37.09 3.20
1676 1760 3.691698 ACCTAGGGTTAAGAGGAGAGG 57.308 52.381 14.81 0.00 34.24 3.69
1677 1761 2.247897 ACCTAGGGTTAAGAGGAGAGGG 59.752 54.545 14.81 0.00 34.24 4.30
1678 1762 2.518834 CCTAGGGTTAAGAGGAGAGGGA 59.481 54.545 0.00 0.00 31.45 4.20
1679 1763 2.858787 AGGGTTAAGAGGAGAGGGAG 57.141 55.000 0.00 0.00 0.00 4.30
1680 1764 1.292546 AGGGTTAAGAGGAGAGGGAGG 59.707 57.143 0.00 0.00 0.00 4.30
1681 1765 1.291335 GGGTTAAGAGGAGAGGGAGGA 59.709 57.143 0.00 0.00 0.00 3.71
1682 1766 2.090437 GGGTTAAGAGGAGAGGGAGGAT 60.090 54.545 0.00 0.00 0.00 3.24
1683 1767 2.969262 GGTTAAGAGGAGAGGGAGGATG 59.031 54.545 0.00 0.00 0.00 3.51
1684 1768 2.969262 GTTAAGAGGAGAGGGAGGATGG 59.031 54.545 0.00 0.00 0.00 3.51
1685 1769 0.267356 AAGAGGAGAGGGAGGATGGG 59.733 60.000 0.00 0.00 0.00 4.00
1686 1770 1.841103 GAGGAGAGGGAGGATGGGC 60.841 68.421 0.00 0.00 0.00 5.36
1687 1771 2.851588 GGAGAGGGAGGATGGGCC 60.852 72.222 0.00 0.00 0.00 5.80
1703 1787 2.990479 CCTAGGAGGCAAACGGCT 59.010 61.111 1.05 0.00 44.01 5.52
1704 1788 2.208527 CCTAGGAGGCAAACGGCTA 58.791 57.895 1.05 0.00 44.01 3.93
1705 1789 0.105039 CCTAGGAGGCAAACGGCTAG 59.895 60.000 1.05 0.00 44.01 3.42
1706 1790 0.105039 CTAGGAGGCAAACGGCTAGG 59.895 60.000 0.00 0.00 44.01 3.02
1719 1803 1.147153 GCTAGGCCTTAGGTGCAGG 59.853 63.158 12.58 0.00 34.08 4.85
1722 1806 0.546747 TAGGCCTTAGGTGCAGGTGT 60.547 55.000 12.58 0.00 33.40 4.16
1725 1809 2.066340 CCTTAGGTGCAGGTGTCCA 58.934 57.895 0.00 0.00 0.00 4.02
1728 1812 1.072331 CTTAGGTGCAGGTGTCCAAGT 59.928 52.381 0.00 0.00 0.00 3.16
1869 1969 0.826062 GAACTTGGGCATGGGGATTG 59.174 55.000 0.00 0.00 0.00 2.67
1876 1976 1.571955 GGCATGGGGATTGTTTTCCT 58.428 50.000 0.00 0.00 35.97 3.36
1892 1992 5.420421 TGTTTTCCTGGACTCACAAAAATGA 59.580 36.000 0.00 0.00 0.00 2.57
1909 2009 8.882736 ACAAAAATGAGAGGAATTTGACAAAAC 58.117 29.630 4.41 2.64 35.52 2.43
1949 2049 7.801893 TTAGAGGAAGTAAAATCCACACCTA 57.198 36.000 0.00 0.00 39.55 3.08
2011 2111 6.985653 TTCAAATGAACTCCAAATGGGTTA 57.014 33.333 0.00 0.00 38.11 2.85
2138 2240 3.700038 GGAAGGATAGGAAGTTGAGTCGA 59.300 47.826 0.00 0.00 0.00 4.20
2145 2247 8.319146 AGGATAGGAAGTTGAGTCGAATAAAAA 58.681 33.333 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 11 9.157104 GGCCTCATTTAAACTTATCTAGATAGC 57.843 37.037 12.16 7.65 0.00 2.97
18 20 5.258051 TGTTCCGGCCTCATTTAAACTTAT 58.742 37.500 0.00 0.00 0.00 1.73
19 21 4.653868 TGTTCCGGCCTCATTTAAACTTA 58.346 39.130 0.00 0.00 0.00 2.24
57 61 8.279970 TGCTAAATGATATATGGGGATTTTCG 57.720 34.615 0.00 0.00 0.00 3.46
182 194 3.664276 CGGTGACAAACGCTTCATAACAG 60.664 47.826 0.00 0.00 0.00 3.16
260 278 0.037605 ATGAGTTGTCGGAACCGGAC 60.038 55.000 9.46 10.29 40.25 4.79
377 405 1.732259 CATGGTCCTCCTCGTTTTTCG 59.268 52.381 0.00 0.00 41.41 3.46
379 407 1.202879 TGCATGGTCCTCCTCGTTTTT 60.203 47.619 0.00 0.00 34.23 1.94
457 495 3.744719 CGCCGAGACGACCTTCCA 61.745 66.667 0.00 0.00 34.06 3.53
485 524 2.791158 CGCTTTGAAAACGCACACTTCT 60.791 45.455 0.00 0.00 0.00 2.85
570 639 4.608948 AGTTCCTCTTCAACTCGTGAAT 57.391 40.909 0.00 0.00 45.27 2.57
593 664 3.422417 ACATCTACGGACATGAACGAG 57.578 47.619 17.79 11.54 0.00 4.18
641 713 2.960384 TCGATCCGCAAAGACCCTATAA 59.040 45.455 0.00 0.00 0.00 0.98
642 714 2.295349 GTCGATCCGCAAAGACCCTATA 59.705 50.000 0.00 0.00 0.00 1.31
645 717 1.218316 GTCGATCCGCAAAGACCCT 59.782 57.895 0.00 0.00 0.00 4.34
714 789 3.369471 CCAAGTTCGACTACATGGACCAT 60.369 47.826 0.00 0.00 38.79 3.55
786 861 3.091545 TCTACGACCCGTCAAATACCTT 58.908 45.455 0.00 0.00 41.54 3.50
799 874 3.488216 GGACGTCAAATACCTCTACGACC 60.488 52.174 18.91 0.00 40.11 4.79
800 875 3.127548 TGGACGTCAAATACCTCTACGAC 59.872 47.826 18.91 0.00 37.04 4.34
801 876 3.127548 GTGGACGTCAAATACCTCTACGA 59.872 47.826 18.91 0.00 37.04 3.43
802 877 3.432782 GTGGACGTCAAATACCTCTACG 58.567 50.000 18.91 0.00 39.37 3.51
803 878 3.432782 CGTGGACGTCAAATACCTCTAC 58.567 50.000 18.91 0.00 34.11 2.59
804 879 2.424601 CCGTGGACGTCAAATACCTCTA 59.575 50.000 18.91 0.00 37.74 2.43
805 880 1.203994 CCGTGGACGTCAAATACCTCT 59.796 52.381 18.91 0.00 37.74 3.69
807 882 0.248289 CCCGTGGACGTCAAATACCT 59.752 55.000 18.91 0.00 37.74 3.08
808 883 1.363885 GCCCGTGGACGTCAAATACC 61.364 60.000 18.91 0.00 37.74 2.73
809 884 1.689352 CGCCCGTGGACGTCAAATAC 61.689 60.000 18.91 9.37 37.74 1.89
810 885 1.446445 CGCCCGTGGACGTCAAATA 60.446 57.895 18.91 0.00 37.74 1.40
812 887 4.224274 ACGCCCGTGGACGTCAAA 62.224 61.111 18.91 1.40 38.28 2.69
819 894 4.682334 TACCTGGACGCCCGTGGA 62.682 66.667 0.00 0.00 34.23 4.02
820 895 4.446413 GTACCTGGACGCCCGTGG 62.446 72.222 0.00 0.00 35.59 4.94
821 896 2.939261 AAGTACCTGGACGCCCGTG 61.939 63.158 0.00 0.00 34.29 4.94
822 897 2.602568 AAGTACCTGGACGCCCGT 60.603 61.111 0.00 0.00 34.29 5.28
842 925 2.368439 CCCATTCGATTCTTCAAGCCA 58.632 47.619 0.00 0.00 0.00 4.75
854 938 1.529796 GCCATGTACCCCCATTCGA 59.470 57.895 0.00 0.00 0.00 3.71
872 956 0.732880 ACGAGACTGCATCCGAAACG 60.733 55.000 0.00 0.00 0.00 3.60
890 974 1.940613 GGCCATCGTAACAGGAATGAC 59.059 52.381 0.00 0.00 0.00 3.06
893 977 2.643551 CAAGGCCATCGTAACAGGAAT 58.356 47.619 5.01 0.00 0.00 3.01
900 984 1.184431 TCGTACCAAGGCCATCGTAA 58.816 50.000 5.01 0.00 0.00 3.18
903 987 0.600255 GGATCGTACCAAGGCCATCG 60.600 60.000 5.01 0.00 0.00 3.84
920 1004 0.753479 TGGCGAGGCTTTGTTTTGGA 60.753 50.000 0.00 0.00 0.00 3.53
968 1052 5.409826 CCTAGTTCAATTTGTCTCCACTGAC 59.590 44.000 0.00 0.00 37.47 3.51
971 1055 4.327680 GCCTAGTTCAATTTGTCTCCACT 58.672 43.478 0.00 0.00 0.00 4.00
1053 1137 2.695759 CGTCGAGCTCTGTCCTGCT 61.696 63.158 12.85 0.00 42.82 4.24
1112 1196 2.045242 CCTCGTCGACCTCCTCCA 60.045 66.667 10.58 0.00 0.00 3.86
1113 1197 2.045143 ACCTCGTCGACCTCCTCC 60.045 66.667 10.58 0.00 0.00 4.30
1114 1198 1.242665 AACACCTCGTCGACCTCCTC 61.243 60.000 10.58 0.00 0.00 3.71
1115 1199 1.228490 AACACCTCGTCGACCTCCT 60.228 57.895 10.58 0.00 0.00 3.69
1116 1200 1.080705 CAACACCTCGTCGACCTCC 60.081 63.158 10.58 0.00 0.00 4.30
1117 1201 1.733399 GCAACACCTCGTCGACCTC 60.733 63.158 10.58 0.00 0.00 3.85
1118 1202 2.338984 GCAACACCTCGTCGACCT 59.661 61.111 10.58 0.00 0.00 3.85
1119 1203 3.103911 CGCAACACCTCGTCGACC 61.104 66.667 10.58 0.00 0.00 4.79
1120 1204 3.764049 GCGCAACACCTCGTCGAC 61.764 66.667 5.18 5.18 0.00 4.20
1139 1223 2.281345 CCATCCTGAGGCCATCGC 60.281 66.667 5.01 0.00 0.00 4.58
1140 1224 2.281345 GCCATCCTGAGGCCATCG 60.281 66.667 5.01 0.00 46.50 3.84
1146 1230 2.203451 GCCATGGCCATCCTGAGG 60.203 66.667 27.24 15.18 34.56 3.86
1147 1231 2.593725 CGCCATGGCCATCCTGAG 60.594 66.667 30.79 10.41 37.98 3.35
1148 1232 4.881440 GCGCCATGGCCATCCTGA 62.881 66.667 30.79 0.00 37.98 3.86
1199 1283 3.479269 GTTCCTTCCTCGCGCACG 61.479 66.667 8.75 0.00 42.01 5.34
1200 1284 2.357034 TGTTCCTTCCTCGCGCAC 60.357 61.111 8.75 0.00 0.00 5.34
1201 1285 2.357034 GTGTTCCTTCCTCGCGCA 60.357 61.111 8.75 0.00 0.00 6.09
1202 1286 1.901650 CTTGTGTTCCTTCCTCGCGC 61.902 60.000 0.00 0.00 0.00 6.86
1203 1287 1.901650 GCTTGTGTTCCTTCCTCGCG 61.902 60.000 0.00 0.00 0.00 5.87
1204 1288 0.884704 TGCTTGTGTTCCTTCCTCGC 60.885 55.000 0.00 0.00 0.00 5.03
1205 1289 1.151668 CTGCTTGTGTTCCTTCCTCG 58.848 55.000 0.00 0.00 0.00 4.63
1206 1290 2.421619 CTCTGCTTGTGTTCCTTCCTC 58.578 52.381 0.00 0.00 0.00 3.71
1207 1291 1.072965 CCTCTGCTTGTGTTCCTTCCT 59.927 52.381 0.00 0.00 0.00 3.36
1208 1292 1.072331 TCCTCTGCTTGTGTTCCTTCC 59.928 52.381 0.00 0.00 0.00 3.46
1209 1293 2.037772 TCTCCTCTGCTTGTGTTCCTTC 59.962 50.000 0.00 0.00 0.00 3.46
1210 1294 2.038295 CTCTCCTCTGCTTGTGTTCCTT 59.962 50.000 0.00 0.00 0.00 3.36
1211 1295 1.622811 CTCTCCTCTGCTTGTGTTCCT 59.377 52.381 0.00 0.00 0.00 3.36
1212 1296 1.338579 CCTCTCCTCTGCTTGTGTTCC 60.339 57.143 0.00 0.00 0.00 3.62
1213 1297 1.620819 TCCTCTCCTCTGCTTGTGTTC 59.379 52.381 0.00 0.00 0.00 3.18
1214 1298 1.722034 TCCTCTCCTCTGCTTGTGTT 58.278 50.000 0.00 0.00 0.00 3.32
1215 1299 1.622811 CTTCCTCTCCTCTGCTTGTGT 59.377 52.381 0.00 0.00 0.00 3.72
1216 1300 1.898472 TCTTCCTCTCCTCTGCTTGTG 59.102 52.381 0.00 0.00 0.00 3.33
1217 1301 2.317371 TCTTCCTCTCCTCTGCTTGT 57.683 50.000 0.00 0.00 0.00 3.16
1218 1302 2.093553 CCTTCTTCCTCTCCTCTGCTTG 60.094 54.545 0.00 0.00 0.00 4.01
1219 1303 2.187100 CCTTCTTCCTCTCCTCTGCTT 58.813 52.381 0.00 0.00 0.00 3.91
1220 1304 1.864669 CCTTCTTCCTCTCCTCTGCT 58.135 55.000 0.00 0.00 0.00 4.24
1221 1305 0.177836 GCCTTCTTCCTCTCCTCTGC 59.822 60.000 0.00 0.00 0.00 4.26
1230 1314 2.750350 CCGTGGTGCCTTCTTCCT 59.250 61.111 0.00 0.00 0.00 3.36
1231 1315 3.056328 GCCGTGGTGCCTTCTTCC 61.056 66.667 0.00 0.00 0.00 3.46
1243 1327 4.143333 CTACCTCCGGTGGCCGTG 62.143 72.222 22.46 6.40 46.80 4.94
1244 1328 4.371417 TCTACCTCCGGTGGCCGT 62.371 66.667 22.46 5.93 46.80 5.68
1246 1330 3.155167 CCTCTACCTCCGGTGGCC 61.155 72.222 22.46 0.00 36.19 5.36
1247 1331 3.851128 GCCTCTACCTCCGGTGGC 61.851 72.222 22.46 11.27 35.63 5.01
1248 1332 1.550130 TTTGCCTCTACCTCCGGTGG 61.550 60.000 21.02 21.02 36.19 4.61
1249 1333 0.108138 CTTTGCCTCTACCTCCGGTG 60.108 60.000 0.00 0.00 36.19 4.94
1250 1334 1.900545 GCTTTGCCTCTACCTCCGGT 61.901 60.000 0.00 0.00 40.16 5.28
1251 1335 1.153349 GCTTTGCCTCTACCTCCGG 60.153 63.158 0.00 0.00 0.00 5.14
1252 1336 1.519455 CGCTTTGCCTCTACCTCCG 60.519 63.158 0.00 0.00 0.00 4.63
1253 1337 1.153349 CCGCTTTGCCTCTACCTCC 60.153 63.158 0.00 0.00 0.00 4.30
1254 1338 1.153349 CCCGCTTTGCCTCTACCTC 60.153 63.158 0.00 0.00 0.00 3.85
1255 1339 0.983378 ATCCCGCTTTGCCTCTACCT 60.983 55.000 0.00 0.00 0.00 3.08
1256 1340 0.815615 CATCCCGCTTTGCCTCTACC 60.816 60.000 0.00 0.00 0.00 3.18
1257 1341 0.815615 CCATCCCGCTTTGCCTCTAC 60.816 60.000 0.00 0.00 0.00 2.59
1258 1342 1.526887 CCATCCCGCTTTGCCTCTA 59.473 57.895 0.00 0.00 0.00 2.43
1259 1343 2.273449 CCATCCCGCTTTGCCTCT 59.727 61.111 0.00 0.00 0.00 3.69
1260 1344 2.608970 TAGCCATCCCGCTTTGCCTC 62.609 60.000 0.00 0.00 40.39 4.70
1261 1345 2.615227 CTAGCCATCCCGCTTTGCCT 62.615 60.000 0.00 0.00 40.39 4.75
1262 1346 2.124320 TAGCCATCCCGCTTTGCC 60.124 61.111 0.00 0.00 40.39 4.52
1263 1347 0.748005 TTCTAGCCATCCCGCTTTGC 60.748 55.000 0.00 0.00 40.39 3.68
1264 1348 1.303309 CTTCTAGCCATCCCGCTTTG 58.697 55.000 0.00 0.00 40.39 2.77
1265 1349 0.464554 GCTTCTAGCCATCCCGCTTT 60.465 55.000 0.00 0.00 40.39 3.51
1266 1350 1.147153 GCTTCTAGCCATCCCGCTT 59.853 57.895 0.00 0.00 40.39 4.68
1267 1351 2.825264 GCTTCTAGCCATCCCGCT 59.175 61.111 0.00 0.00 43.09 5.52
1276 1360 2.501610 CTGACCCCGGCTTCTAGC 59.498 66.667 0.00 0.00 41.46 3.42
1277 1361 2.501610 GCTGACCCCGGCTTCTAG 59.498 66.667 0.00 0.00 41.43 2.43
1278 1362 3.458163 CGCTGACCCCGGCTTCTA 61.458 66.667 0.00 0.00 42.47 2.10
1285 1369 4.796231 CTTCGTCCGCTGACCCCG 62.796 72.222 2.40 0.00 38.32 5.73
1287 1371 3.665675 ATGCTTCGTCCGCTGACCC 62.666 63.158 2.40 0.00 38.32 4.46
1288 1372 2.125512 ATGCTTCGTCCGCTGACC 60.126 61.111 2.40 0.00 38.32 4.02
1289 1373 0.807667 ATGATGCTTCGTCCGCTGAC 60.808 55.000 0.00 0.00 38.18 3.51
1290 1374 0.108186 AATGATGCTTCGTCCGCTGA 60.108 50.000 0.00 0.00 0.00 4.26
1291 1375 0.027194 CAATGATGCTTCGTCCGCTG 59.973 55.000 0.00 0.00 0.00 5.18
1292 1376 1.091771 CCAATGATGCTTCGTCCGCT 61.092 55.000 0.00 0.00 0.00 5.52
1293 1377 1.353103 CCAATGATGCTTCGTCCGC 59.647 57.895 0.00 0.00 0.00 5.54
1294 1378 2.016961 CCCAATGATGCTTCGTCCG 58.983 57.895 0.00 0.00 0.00 4.79
1295 1379 1.031571 TGCCCAATGATGCTTCGTCC 61.032 55.000 0.00 0.00 0.00 4.79
1296 1380 0.810648 TTGCCCAATGATGCTTCGTC 59.189 50.000 0.00 0.00 0.00 4.20
1297 1381 0.527565 GTTGCCCAATGATGCTTCGT 59.472 50.000 0.00 0.00 0.00 3.85
1298 1382 0.523968 CGTTGCCCAATGATGCTTCG 60.524 55.000 0.00 0.00 0.00 3.79
1299 1383 0.810648 TCGTTGCCCAATGATGCTTC 59.189 50.000 0.00 0.00 31.88 3.86
1300 1384 0.527565 GTCGTTGCCCAATGATGCTT 59.472 50.000 6.24 0.00 38.45 3.91
1301 1385 1.647545 CGTCGTTGCCCAATGATGCT 61.648 55.000 8.92 0.00 38.45 3.79
1302 1386 1.226379 CGTCGTTGCCCAATGATGC 60.226 57.895 8.92 0.00 38.45 3.91
1303 1387 1.305219 ACCGTCGTTGCCCAATGATG 61.305 55.000 13.11 13.11 40.99 3.07
1304 1388 1.002624 ACCGTCGTTGCCCAATGAT 60.003 52.632 6.24 0.00 38.45 2.45
1305 1389 1.669760 GACCGTCGTTGCCCAATGA 60.670 57.895 0.00 0.00 34.23 2.57
1306 1390 1.511318 TTGACCGTCGTTGCCCAATG 61.511 55.000 0.00 0.00 0.00 2.82
1307 1391 1.228003 TTGACCGTCGTTGCCCAAT 60.228 52.632 0.00 0.00 0.00 3.16
1308 1392 1.890041 CTTGACCGTCGTTGCCCAA 60.890 57.895 0.00 0.00 0.00 4.12
1309 1393 2.280524 CTTGACCGTCGTTGCCCA 60.281 61.111 0.00 0.00 0.00 5.36
1310 1394 3.047877 CCTTGACCGTCGTTGCCC 61.048 66.667 0.00 0.00 0.00 5.36
1311 1395 3.047877 CCCTTGACCGTCGTTGCC 61.048 66.667 0.00 0.00 0.00 4.52
1312 1396 2.027625 CTCCCTTGACCGTCGTTGC 61.028 63.158 0.00 0.00 0.00 4.17
1313 1397 1.374252 CCTCCCTTGACCGTCGTTG 60.374 63.158 0.00 0.00 0.00 4.10
1314 1398 3.057337 CCTCCCTTGACCGTCGTT 58.943 61.111 0.00 0.00 0.00 3.85
1315 1399 3.692406 GCCTCCCTTGACCGTCGT 61.692 66.667 0.00 0.00 0.00 4.34
1316 1400 4.796231 CGCCTCCCTTGACCGTCG 62.796 72.222 0.00 0.00 0.00 5.12
1353 1437 2.750637 TCTCCTCCCGTGCTCGAC 60.751 66.667 10.21 0.00 39.71 4.20
1354 1438 2.438614 CTCTCCTCCCGTGCTCGA 60.439 66.667 10.21 0.00 39.71 4.04
1355 1439 3.522731 CCTCTCCTCCCGTGCTCG 61.523 72.222 0.14 0.14 0.00 5.03
1356 1440 3.844090 GCCTCTCCTCCCGTGCTC 61.844 72.222 0.00 0.00 0.00 4.26
1357 1441 4.704103 TGCCTCTCCTCCCGTGCT 62.704 66.667 0.00 0.00 0.00 4.40
1358 1442 3.672295 CTTGCCTCTCCTCCCGTGC 62.672 68.421 0.00 0.00 0.00 5.34
1359 1443 2.581354 CTTGCCTCTCCTCCCGTG 59.419 66.667 0.00 0.00 0.00 4.94
1360 1444 2.685380 CCTTGCCTCTCCTCCCGT 60.685 66.667 0.00 0.00 0.00 5.28
1361 1445 4.168291 GCCTTGCCTCTCCTCCCG 62.168 72.222 0.00 0.00 0.00 5.14
1362 1446 3.803162 GGCCTTGCCTCTCCTCCC 61.803 72.222 0.00 0.00 46.69 4.30
1371 1455 1.312371 TGCTTAATCACGGCCTTGCC 61.312 55.000 3.88 0.00 46.75 4.52
1372 1456 0.099436 CTGCTTAATCACGGCCTTGC 59.901 55.000 3.88 0.00 0.00 4.01
1373 1457 0.099436 GCTGCTTAATCACGGCCTTG 59.901 55.000 1.99 1.99 31.76 3.61
1374 1458 1.369091 CGCTGCTTAATCACGGCCTT 61.369 55.000 0.00 0.00 34.58 4.35
1375 1459 1.815421 CGCTGCTTAATCACGGCCT 60.815 57.895 0.00 0.00 34.58 5.19
1376 1460 2.709475 CGCTGCTTAATCACGGCC 59.291 61.111 0.00 0.00 34.58 6.13
1377 1461 2.709475 CCGCTGCTTAATCACGGC 59.291 61.111 0.00 2.02 37.05 5.68
1378 1462 2.709475 GCCGCTGCTTAATCACGG 59.291 61.111 12.81 12.81 46.50 4.94
1379 1463 2.164663 TCGCCGCTGCTTAATCACG 61.165 57.895 0.00 0.00 34.43 4.35
1380 1464 1.348594 GTCGCCGCTGCTTAATCAC 59.651 57.895 0.00 0.00 34.43 3.06
1381 1465 1.079474 TGTCGCCGCTGCTTAATCA 60.079 52.632 0.00 0.00 34.43 2.57
1382 1466 1.638467 CTGTCGCCGCTGCTTAATC 59.362 57.895 0.00 0.00 34.43 1.75
1383 1467 1.815421 CCTGTCGCCGCTGCTTAAT 60.815 57.895 0.00 0.00 34.43 1.40
1384 1468 2.434185 CCTGTCGCCGCTGCTTAA 60.434 61.111 0.00 0.00 34.43 1.85
1385 1469 4.451150 CCCTGTCGCCGCTGCTTA 62.451 66.667 0.00 0.00 34.43 3.09
1405 1489 4.504596 TGATCCCCATGGCCACGC 62.505 66.667 8.16 0.00 0.00 5.34
1406 1490 2.203252 CTGATCCCCATGGCCACG 60.203 66.667 8.16 0.00 0.00 4.94
1407 1491 2.196776 CCTGATCCCCATGGCCAC 59.803 66.667 8.16 0.00 0.00 5.01
1408 1492 3.824425 GCCTGATCCCCATGGCCA 61.824 66.667 8.56 8.56 39.49 5.36
1409 1493 3.824425 TGCCTGATCCCCATGGCC 61.824 66.667 6.09 0.00 44.32 5.36
1410 1494 2.520260 GTGCCTGATCCCCATGGC 60.520 66.667 6.09 0.00 45.10 4.40
1411 1495 2.203252 CGTGCCTGATCCCCATGG 60.203 66.667 4.14 4.14 0.00 3.66
1412 1496 2.203252 CCGTGCCTGATCCCCATG 60.203 66.667 0.00 0.00 0.00 3.66
1413 1497 4.195334 GCCGTGCCTGATCCCCAT 62.195 66.667 0.00 0.00 0.00 4.00
1425 1509 4.323477 TTCTTCCCCCACGCCGTG 62.323 66.667 10.95 10.95 0.00 4.94
1426 1510 4.016706 CTTCTTCCCCCACGCCGT 62.017 66.667 0.00 0.00 0.00 5.68
1427 1511 2.741486 TTTCTTCTTCCCCCACGCCG 62.741 60.000 0.00 0.00 0.00 6.46
1428 1512 1.074248 TTTCTTCTTCCCCCACGCC 59.926 57.895 0.00 0.00 0.00 5.68
1429 1513 1.241990 GGTTTCTTCTTCCCCCACGC 61.242 60.000 0.00 0.00 0.00 5.34
1430 1514 0.109723 TGGTTTCTTCTTCCCCCACG 59.890 55.000 0.00 0.00 0.00 4.94
1431 1515 1.547901 CCTGGTTTCTTCTTCCCCCAC 60.548 57.143 0.00 0.00 0.00 4.61
1432 1516 0.777446 CCTGGTTTCTTCTTCCCCCA 59.223 55.000 0.00 0.00 0.00 4.96
1433 1517 0.039764 CCCTGGTTTCTTCTTCCCCC 59.960 60.000 0.00 0.00 0.00 5.40
1434 1518 0.039764 CCCCTGGTTTCTTCTTCCCC 59.960 60.000 0.00 0.00 0.00 4.81
1435 1519 1.073098 TCCCCTGGTTTCTTCTTCCC 58.927 55.000 0.00 0.00 0.00 3.97
1436 1520 2.555448 CCTTCCCCTGGTTTCTTCTTCC 60.555 54.545 0.00 0.00 0.00 3.46
1437 1521 2.796557 CCTTCCCCTGGTTTCTTCTTC 58.203 52.381 0.00 0.00 0.00 2.87
1438 1522 1.203063 GCCTTCCCCTGGTTTCTTCTT 60.203 52.381 0.00 0.00 0.00 2.52
1439 1523 0.405973 GCCTTCCCCTGGTTTCTTCT 59.594 55.000 0.00 0.00 0.00 2.85
1440 1524 0.960861 CGCCTTCCCCTGGTTTCTTC 60.961 60.000 0.00 0.00 0.00 2.87
1441 1525 1.074951 CGCCTTCCCCTGGTTTCTT 59.925 57.895 0.00 0.00 0.00 2.52
1442 1526 2.154074 ACGCCTTCCCCTGGTTTCT 61.154 57.895 0.00 0.00 0.00 2.52
1443 1527 1.971695 CACGCCTTCCCCTGGTTTC 60.972 63.158 0.00 0.00 0.00 2.78
1444 1528 2.115266 CACGCCTTCCCCTGGTTT 59.885 61.111 0.00 0.00 0.00 3.27
1445 1529 3.966543 CCACGCCTTCCCCTGGTT 61.967 66.667 0.00 0.00 0.00 3.67
1447 1531 4.410400 GACCACGCCTTCCCCTGG 62.410 72.222 0.00 0.00 0.00 4.45
1448 1532 3.636231 TGACCACGCCTTCCCCTG 61.636 66.667 0.00 0.00 0.00 4.45
1449 1533 3.637273 GTGACCACGCCTTCCCCT 61.637 66.667 0.00 0.00 0.00 4.79
1450 1534 3.901797 CTGTGACCACGCCTTCCCC 62.902 68.421 0.00 0.00 0.00 4.81
1451 1535 2.358737 CTGTGACCACGCCTTCCC 60.359 66.667 0.00 0.00 0.00 3.97
1452 1536 2.358737 CCTGTGACCACGCCTTCC 60.359 66.667 0.00 0.00 0.00 3.46
1453 1537 1.961277 CACCTGTGACCACGCCTTC 60.961 63.158 0.00 0.00 0.00 3.46
1454 1538 2.111043 CACCTGTGACCACGCCTT 59.889 61.111 0.00 0.00 0.00 4.35
1455 1539 3.941188 CCACCTGTGACCACGCCT 61.941 66.667 0.00 0.00 0.00 5.52
1456 1540 4.250305 ACCACCTGTGACCACGCC 62.250 66.667 0.00 0.00 0.00 5.68
1457 1541 2.665185 GACCACCTGTGACCACGC 60.665 66.667 0.00 0.00 0.00 5.34
1458 1542 1.006102 GAGACCACCTGTGACCACG 60.006 63.158 0.00 0.00 0.00 4.94
1459 1543 1.371558 GGAGACCACCTGTGACCAC 59.628 63.158 0.00 0.00 0.00 4.16
1460 1544 2.207229 CGGAGACCACCTGTGACCA 61.207 63.158 0.00 0.00 0.00 4.02
1461 1545 2.657237 CGGAGACCACCTGTGACC 59.343 66.667 0.00 0.00 0.00 4.02
1462 1546 2.657237 CCGGAGACCACCTGTGAC 59.343 66.667 0.00 0.00 0.00 3.67
1463 1547 3.311110 GCCGGAGACCACCTGTGA 61.311 66.667 5.05 0.00 0.00 3.58
1464 1548 4.742201 CGCCGGAGACCACCTGTG 62.742 72.222 5.05 0.00 0.00 3.66
1465 1549 4.988716 TCGCCGGAGACCACCTGT 62.989 66.667 5.05 0.00 0.00 4.00
1466 1550 4.436998 GTCGCCGGAGACCACCTG 62.437 72.222 26.14 0.00 35.22 4.00
1478 1562 4.436998 CACCAGACTCCGGTCGCC 62.437 72.222 0.00 0.00 46.29 5.54
1479 1563 4.436998 CCACCAGACTCCGGTCGC 62.437 72.222 0.00 0.00 46.29 5.19
1480 1564 3.760035 CCCACCAGACTCCGGTCG 61.760 72.222 0.00 0.00 46.29 4.79
1481 1565 3.391382 CCCCACCAGACTCCGGTC 61.391 72.222 0.00 0.00 42.41 4.79
1482 1566 4.250170 ACCCCACCAGACTCCGGT 62.250 66.667 0.00 0.00 37.16 5.28
1483 1567 3.391382 GACCCCACCAGACTCCGG 61.391 72.222 0.00 0.00 0.00 5.14
1484 1568 2.603473 TGACCCCACCAGACTCCG 60.603 66.667 0.00 0.00 0.00 4.63
1485 1569 2.294078 CCTGACCCCACCAGACTCC 61.294 68.421 0.00 0.00 33.65 3.85
1486 1570 2.960688 GCCTGACCCCACCAGACTC 61.961 68.421 0.00 0.00 33.65 3.36
1487 1571 2.930562 GCCTGACCCCACCAGACT 60.931 66.667 0.00 0.00 33.65 3.24
1488 1572 4.394712 CGCCTGACCCCACCAGAC 62.395 72.222 0.00 0.00 33.65 3.51
1498 1582 4.980805 TGTGAACCGCCGCCTGAC 62.981 66.667 0.00 0.00 0.00 3.51
1499 1583 3.950794 GATGTGAACCGCCGCCTGA 62.951 63.158 0.00 0.00 0.00 3.86
1500 1584 3.499737 GATGTGAACCGCCGCCTG 61.500 66.667 0.00 0.00 0.00 4.85
1501 1585 3.958147 CTGATGTGAACCGCCGCCT 62.958 63.158 0.00 0.00 0.00 5.52
1502 1586 3.499737 CTGATGTGAACCGCCGCC 61.500 66.667 0.00 0.00 0.00 6.13
1503 1587 3.499737 CCTGATGTGAACCGCCGC 61.500 66.667 0.00 0.00 0.00 6.53
1504 1588 2.819595 CCCTGATGTGAACCGCCG 60.820 66.667 0.00 0.00 0.00 6.46
1505 1589 1.450312 CTCCCTGATGTGAACCGCC 60.450 63.158 0.00 0.00 0.00 6.13
1506 1590 1.450312 CCTCCCTGATGTGAACCGC 60.450 63.158 0.00 0.00 0.00 5.68
1507 1591 1.450312 GCCTCCCTGATGTGAACCG 60.450 63.158 0.00 0.00 0.00 4.44
1508 1592 1.077429 GGCCTCCCTGATGTGAACC 60.077 63.158 0.00 0.00 0.00 3.62
1509 1593 0.257039 ATGGCCTCCCTGATGTGAAC 59.743 55.000 3.32 0.00 0.00 3.18
1510 1594 0.256752 CATGGCCTCCCTGATGTGAA 59.743 55.000 3.32 0.00 0.00 3.18
1511 1595 1.638679 CCATGGCCTCCCTGATGTGA 61.639 60.000 3.32 0.00 0.00 3.58
1512 1596 1.152819 CCATGGCCTCCCTGATGTG 60.153 63.158 3.32 0.00 0.00 3.21
1513 1597 3.065787 GCCATGGCCTCCCTGATGT 62.066 63.158 27.24 0.00 34.56 3.06
1514 1598 2.203451 GCCATGGCCTCCCTGATG 60.203 66.667 27.24 0.00 34.56 3.07
1515 1599 3.882326 CGCCATGGCCTCCCTGAT 61.882 66.667 30.79 0.00 37.98 2.90
1523 1607 4.615815 ATCTCGAGCGCCATGGCC 62.616 66.667 30.79 22.29 37.98 5.36
1524 1608 3.344215 CATCTCGAGCGCCATGGC 61.344 66.667 27.67 27.67 37.85 4.40
1525 1609 3.344215 GCATCTCGAGCGCCATGG 61.344 66.667 7.63 7.63 0.00 3.66
1526 1610 2.279985 AGCATCTCGAGCGCCATG 60.280 61.111 19.27 13.53 37.01 3.66
1527 1611 2.028778 GAGCATCTCGAGCGCCAT 59.971 61.111 19.27 5.77 37.01 4.40
1538 1622 0.188342 AGGGAGGGAGAGAGAGCATC 59.812 60.000 0.00 0.00 0.00 3.91
1539 1623 0.188342 GAGGGAGGGAGAGAGAGCAT 59.812 60.000 0.00 0.00 0.00 3.79
1540 1624 1.618030 GAGGGAGGGAGAGAGAGCA 59.382 63.158 0.00 0.00 0.00 4.26
1541 1625 1.152546 GGAGGGAGGGAGAGAGAGC 60.153 68.421 0.00 0.00 0.00 4.09
1542 1626 0.998945 AGGGAGGGAGGGAGAGAGAG 60.999 65.000 0.00 0.00 0.00 3.20
1543 1627 0.996762 GAGGGAGGGAGGGAGAGAGA 60.997 65.000 0.00 0.00 0.00 3.10
1544 1628 0.998945 AGAGGGAGGGAGGGAGAGAG 60.999 65.000 0.00 0.00 0.00 3.20
1545 1629 0.996762 GAGAGGGAGGGAGGGAGAGA 60.997 65.000 0.00 0.00 0.00 3.10
1546 1630 0.998945 AGAGAGGGAGGGAGGGAGAG 60.999 65.000 0.00 0.00 0.00 3.20
1547 1631 0.996762 GAGAGAGGGAGGGAGGGAGA 60.997 65.000 0.00 0.00 0.00 3.71
1548 1632 0.998945 AGAGAGAGGGAGGGAGGGAG 60.999 65.000 0.00 0.00 0.00 4.30
1549 1633 0.996762 GAGAGAGAGGGAGGGAGGGA 60.997 65.000 0.00 0.00 0.00 4.20
1550 1634 1.292941 TGAGAGAGAGGGAGGGAGGG 61.293 65.000 0.00 0.00 0.00 4.30
1551 1635 0.106217 GTGAGAGAGAGGGAGGGAGG 60.106 65.000 0.00 0.00 0.00 4.30
1552 1636 0.926293 AGTGAGAGAGAGGGAGGGAG 59.074 60.000 0.00 0.00 0.00 4.30
1553 1637 0.923358 GAGTGAGAGAGAGGGAGGGA 59.077 60.000 0.00 0.00 0.00 4.20
1554 1638 0.926293 AGAGTGAGAGAGAGGGAGGG 59.074 60.000 0.00 0.00 0.00 4.30
1555 1639 1.563879 TGAGAGTGAGAGAGAGGGAGG 59.436 57.143 0.00 0.00 0.00 4.30
1556 1640 2.239654 AGTGAGAGTGAGAGAGAGGGAG 59.760 54.545 0.00 0.00 0.00 4.30
1557 1641 2.238646 GAGTGAGAGTGAGAGAGAGGGA 59.761 54.545 0.00 0.00 0.00 4.20
1558 1642 2.239654 AGAGTGAGAGTGAGAGAGAGGG 59.760 54.545 0.00 0.00 0.00 4.30
1559 1643 3.198635 AGAGAGTGAGAGTGAGAGAGAGG 59.801 52.174 0.00 0.00 0.00 3.69
1560 1644 4.161189 AGAGAGAGTGAGAGTGAGAGAGAG 59.839 50.000 0.00 0.00 0.00 3.20
1561 1645 4.096681 AGAGAGAGTGAGAGTGAGAGAGA 58.903 47.826 0.00 0.00 0.00 3.10
1562 1646 4.161189 AGAGAGAGAGTGAGAGTGAGAGAG 59.839 50.000 0.00 0.00 0.00 3.20
1563 1647 4.096681 AGAGAGAGAGTGAGAGTGAGAGA 58.903 47.826 0.00 0.00 0.00 3.10
1564 1648 4.161189 AGAGAGAGAGAGTGAGAGTGAGAG 59.839 50.000 0.00 0.00 0.00 3.20
1565 1649 4.096681 AGAGAGAGAGAGTGAGAGTGAGA 58.903 47.826 0.00 0.00 0.00 3.27
1566 1650 4.161189 AGAGAGAGAGAGAGTGAGAGTGAG 59.839 50.000 0.00 0.00 0.00 3.51
1567 1651 4.096681 AGAGAGAGAGAGAGTGAGAGTGA 58.903 47.826 0.00 0.00 0.00 3.41
1568 1652 4.161189 AGAGAGAGAGAGAGAGTGAGAGTG 59.839 50.000 0.00 0.00 0.00 3.51
1569 1653 4.161189 CAGAGAGAGAGAGAGAGTGAGAGT 59.839 50.000 0.00 0.00 0.00 3.24
1570 1654 4.403752 TCAGAGAGAGAGAGAGAGTGAGAG 59.596 50.000 0.00 0.00 0.00 3.20
1571 1655 4.160439 GTCAGAGAGAGAGAGAGAGTGAGA 59.840 50.000 0.00 0.00 0.00 3.27
1572 1656 4.437239 GTCAGAGAGAGAGAGAGAGTGAG 58.563 52.174 0.00 0.00 0.00 3.51
1573 1657 3.119137 CGTCAGAGAGAGAGAGAGAGTGA 60.119 52.174 0.00 0.00 0.00 3.41
1574 1658 3.190079 CGTCAGAGAGAGAGAGAGAGTG 58.810 54.545 0.00 0.00 0.00 3.51
1575 1659 2.168521 CCGTCAGAGAGAGAGAGAGAGT 59.831 54.545 0.00 0.00 0.00 3.24
1576 1660 2.826428 CCGTCAGAGAGAGAGAGAGAG 58.174 57.143 0.00 0.00 0.00 3.20
1577 1661 1.134521 GCCGTCAGAGAGAGAGAGAGA 60.135 57.143 0.00 0.00 0.00 3.10
1578 1662 1.299541 GCCGTCAGAGAGAGAGAGAG 58.700 60.000 0.00 0.00 0.00 3.20
1579 1663 0.461163 CGCCGTCAGAGAGAGAGAGA 60.461 60.000 0.00 0.00 0.00 3.10
1580 1664 0.461163 TCGCCGTCAGAGAGAGAGAG 60.461 60.000 0.00 0.00 0.00 3.20
1581 1665 0.036294 TTCGCCGTCAGAGAGAGAGA 60.036 55.000 0.00 0.00 0.00 3.10
1582 1666 1.002900 GATTCGCCGTCAGAGAGAGAG 60.003 57.143 0.00 0.00 0.00 3.20
1583 1667 1.018148 GATTCGCCGTCAGAGAGAGA 58.982 55.000 0.00 0.00 0.00 3.10
1584 1668 0.316607 CGATTCGCCGTCAGAGAGAG 60.317 60.000 0.00 0.00 0.00 3.20
1585 1669 0.743345 TCGATTCGCCGTCAGAGAGA 60.743 55.000 0.00 0.00 0.00 3.10
1586 1670 0.316607 CTCGATTCGCCGTCAGAGAG 60.317 60.000 0.00 0.00 0.00 3.20
1587 1671 1.715862 CCTCGATTCGCCGTCAGAGA 61.716 60.000 0.00 0.00 0.00 3.10
1588 1672 1.298713 CCTCGATTCGCCGTCAGAG 60.299 63.158 0.00 0.00 0.00 3.35
1589 1673 1.310216 TTCCTCGATTCGCCGTCAGA 61.310 55.000 0.00 0.00 0.00 3.27
1590 1674 0.867753 CTTCCTCGATTCGCCGTCAG 60.868 60.000 0.00 0.00 0.00 3.51
1591 1675 1.138883 CTTCCTCGATTCGCCGTCA 59.861 57.895 0.00 0.00 0.00 4.35
1592 1676 0.592754 CTCTTCCTCGATTCGCCGTC 60.593 60.000 0.00 0.00 0.00 4.79
1593 1677 1.433879 CTCTTCCTCGATTCGCCGT 59.566 57.895 0.00 0.00 0.00 5.68
1594 1678 1.299468 CCTCTTCCTCGATTCGCCG 60.299 63.158 0.00 0.00 0.00 6.46
1595 1679 1.068250 CCCTCTTCCTCGATTCGCC 59.932 63.158 0.00 0.00 0.00 5.54
1596 1680 1.068250 CCCCTCTTCCTCGATTCGC 59.932 63.158 0.00 0.00 0.00 4.70
1597 1681 1.271102 GATCCCCTCTTCCTCGATTCG 59.729 57.143 0.00 0.00 0.00 3.34
1598 1682 1.271102 CGATCCCCTCTTCCTCGATTC 59.729 57.143 0.00 0.00 0.00 2.52
1599 1683 1.333177 CGATCCCCTCTTCCTCGATT 58.667 55.000 0.00 0.00 0.00 3.34
1600 1684 0.540830 CCGATCCCCTCTTCCTCGAT 60.541 60.000 0.00 0.00 0.00 3.59
1601 1685 1.152735 CCGATCCCCTCTTCCTCGA 60.153 63.158 0.00 0.00 0.00 4.04
1602 1686 2.203771 CCCGATCCCCTCTTCCTCG 61.204 68.421 0.00 0.00 0.00 4.63
1603 1687 1.075151 ACCCGATCCCCTCTTCCTC 60.075 63.158 0.00 0.00 0.00 3.71
1604 1688 1.075151 GACCCGATCCCCTCTTCCT 60.075 63.158 0.00 0.00 0.00 3.36
1605 1689 2.499827 CGACCCGATCCCCTCTTCC 61.500 68.421 0.00 0.00 0.00 3.46
1606 1690 1.455217 TCGACCCGATCCCCTCTTC 60.455 63.158 0.00 0.00 0.00 2.87
1607 1691 1.455959 CTCGACCCGATCCCCTCTT 60.456 63.158 0.00 0.00 34.61 2.85
1608 1692 2.196229 CTCGACCCGATCCCCTCT 59.804 66.667 0.00 0.00 34.61 3.69
1609 1693 2.913060 CCTCGACCCGATCCCCTC 60.913 72.222 0.00 0.00 34.61 4.30
1610 1694 4.541648 CCCTCGACCCGATCCCCT 62.542 72.222 0.00 0.00 34.61 4.79
1612 1696 4.534824 TCCCCTCGACCCGATCCC 62.535 72.222 0.00 0.00 34.61 3.85
1613 1697 2.716833 ATCTCCCCTCGACCCGATCC 62.717 65.000 0.00 0.00 34.61 3.36
1614 1698 1.228613 ATCTCCCCTCGACCCGATC 60.229 63.158 0.00 0.00 34.61 3.69
1615 1699 1.531840 CATCTCCCCTCGACCCGAT 60.532 63.158 0.00 0.00 34.61 4.18
1616 1700 2.123854 CATCTCCCCTCGACCCGA 60.124 66.667 0.00 0.00 0.00 5.14
1617 1701 3.227276 CCATCTCCCCTCGACCCG 61.227 72.222 0.00 0.00 0.00 5.28
1618 1702 2.844839 CCCATCTCCCCTCGACCC 60.845 72.222 0.00 0.00 0.00 4.46
1619 1703 2.681273 ATCCCCATCTCCCCTCGACC 62.681 65.000 0.00 0.00 0.00 4.79
1620 1704 1.152226 ATCCCCATCTCCCCTCGAC 60.152 63.158 0.00 0.00 0.00 4.20
1621 1705 1.156330 GATCCCCATCTCCCCTCGA 59.844 63.158 0.00 0.00 0.00 4.04
1622 1706 2.279069 CGATCCCCATCTCCCCTCG 61.279 68.421 0.00 0.00 0.00 4.63
1623 1707 1.915769 CCGATCCCCATCTCCCCTC 60.916 68.421 0.00 0.00 0.00 4.30
1624 1708 2.205462 CCGATCCCCATCTCCCCT 59.795 66.667 0.00 0.00 0.00 4.79
1625 1709 3.641454 GCCGATCCCCATCTCCCC 61.641 72.222 0.00 0.00 0.00 4.81
1626 1710 2.527875 AGCCGATCCCCATCTCCC 60.528 66.667 0.00 0.00 0.00 4.30
1627 1711 1.825281 CTCAGCCGATCCCCATCTCC 61.825 65.000 0.00 0.00 0.00 3.71
1628 1712 1.670590 CTCAGCCGATCCCCATCTC 59.329 63.158 0.00 0.00 0.00 2.75
1629 1713 2.515071 GCTCAGCCGATCCCCATCT 61.515 63.158 0.00 0.00 0.00 2.90
1630 1714 2.031768 GCTCAGCCGATCCCCATC 59.968 66.667 0.00 0.00 0.00 3.51
1631 1715 3.933722 CGCTCAGCCGATCCCCAT 61.934 66.667 0.00 0.00 0.00 4.00
1634 1718 4.593864 GACCGCTCAGCCGATCCC 62.594 72.222 0.00 0.00 0.00 3.85
1635 1719 4.933064 CGACCGCTCAGCCGATCC 62.933 72.222 0.00 0.00 0.00 3.36
1636 1720 4.933064 CCGACCGCTCAGCCGATC 62.933 72.222 0.00 0.00 0.00 3.69
1640 1724 4.509737 GTACCCGACCGCTCAGCC 62.510 72.222 0.00 0.00 0.00 4.85
1641 1725 4.509737 GGTACCCGACCGCTCAGC 62.510 72.222 0.00 0.00 38.87 4.26
1649 1733 2.954989 CTCTTAACCCTAGGTACCCGAC 59.045 54.545 8.74 0.00 33.12 4.79
1650 1734 2.091665 CCTCTTAACCCTAGGTACCCGA 60.092 54.545 8.74 0.00 33.12 5.14
1651 1735 2.091665 TCCTCTTAACCCTAGGTACCCG 60.092 54.545 8.74 0.00 33.12 5.28
1652 1736 3.206185 TCTCCTCTTAACCCTAGGTACCC 59.794 52.174 8.74 0.00 33.12 3.69
1653 1737 4.472496 CTCTCCTCTTAACCCTAGGTACC 58.528 52.174 8.29 2.73 33.12 3.34
1654 1738 4.472496 CCTCTCCTCTTAACCCTAGGTAC 58.528 52.174 8.29 0.00 33.12 3.34
1655 1739 3.466344 CCCTCTCCTCTTAACCCTAGGTA 59.534 52.174 8.29 0.00 33.12 3.08
1656 1740 2.247897 CCCTCTCCTCTTAACCCTAGGT 59.752 54.545 8.29 0.00 37.65 3.08
1657 1741 2.518834 TCCCTCTCCTCTTAACCCTAGG 59.481 54.545 0.06 0.06 0.00 3.02
1658 1742 3.437344 CCTCCCTCTCCTCTTAACCCTAG 60.437 56.522 0.00 0.00 0.00 3.02
1659 1743 2.518834 CCTCCCTCTCCTCTTAACCCTA 59.481 54.545 0.00 0.00 0.00 3.53
1660 1744 1.292546 CCTCCCTCTCCTCTTAACCCT 59.707 57.143 0.00 0.00 0.00 4.34
1661 1745 1.291335 TCCTCCCTCTCCTCTTAACCC 59.709 57.143 0.00 0.00 0.00 4.11
1662 1746 2.850695 TCCTCCCTCTCCTCTTAACC 57.149 55.000 0.00 0.00 0.00 2.85
1663 1747 2.969262 CCATCCTCCCTCTCCTCTTAAC 59.031 54.545 0.00 0.00 0.00 2.01
1664 1748 2.090494 CCCATCCTCCCTCTCCTCTTAA 60.090 54.545 0.00 0.00 0.00 1.85
1665 1749 1.505538 CCCATCCTCCCTCTCCTCTTA 59.494 57.143 0.00 0.00 0.00 2.10
1666 1750 0.267356 CCCATCCTCCCTCTCCTCTT 59.733 60.000 0.00 0.00 0.00 2.85
1667 1751 1.945447 CCCATCCTCCCTCTCCTCT 59.055 63.158 0.00 0.00 0.00 3.69
1668 1752 1.841103 GCCCATCCTCCCTCTCCTC 60.841 68.421 0.00 0.00 0.00 3.71
1669 1753 2.288643 GCCCATCCTCCCTCTCCT 59.711 66.667 0.00 0.00 0.00 3.69
1670 1754 2.037304 TAGGCCCATCCTCCCTCTCC 62.037 65.000 0.00 0.00 43.20 3.71
1671 1755 0.544120 CTAGGCCCATCCTCCCTCTC 60.544 65.000 0.00 0.00 43.20 3.20
1672 1756 1.551358 CTAGGCCCATCCTCCCTCT 59.449 63.158 0.00 0.00 43.20 3.69
1673 1757 1.537643 CCTAGGCCCATCCTCCCTC 60.538 68.421 0.00 0.00 43.20 4.30
1674 1758 2.027059 TCCTAGGCCCATCCTCCCT 61.027 63.158 2.96 0.00 43.20 4.20
1675 1759 1.537643 CTCCTAGGCCCATCCTCCC 60.538 68.421 2.96 0.00 43.20 4.30
1676 1760 1.537643 CCTCCTAGGCCCATCCTCC 60.538 68.421 2.96 0.00 43.20 4.30
1677 1761 4.224105 CCTCCTAGGCCCATCCTC 57.776 66.667 2.96 0.00 43.20 3.71
1686 1770 0.105039 CTAGCCGTTTGCCTCCTAGG 59.895 60.000 0.82 0.82 42.71 3.02
1687 1771 0.105039 CCTAGCCGTTTGCCTCCTAG 59.895 60.000 0.00 0.00 42.71 3.02
1688 1772 1.968050 GCCTAGCCGTTTGCCTCCTA 61.968 60.000 0.00 0.00 42.71 2.94
1689 1773 2.990479 CCTAGCCGTTTGCCTCCT 59.010 61.111 0.00 0.00 42.71 3.69
1690 1774 2.824489 GCCTAGCCGTTTGCCTCC 60.824 66.667 0.00 0.00 42.71 4.30
1691 1775 2.824489 GGCCTAGCCGTTTGCCTC 60.824 66.667 0.00 0.00 39.62 4.70
1701 1785 1.147153 CCTGCACCTAAGGCCTAGC 59.853 63.158 5.16 6.39 0.00 3.42
1702 1786 0.179000 CACCTGCACCTAAGGCCTAG 59.821 60.000 5.16 3.78 38.48 3.02
1703 1787 0.546747 ACACCTGCACCTAAGGCCTA 60.547 55.000 5.16 0.00 38.48 3.93
1704 1788 1.842381 GACACCTGCACCTAAGGCCT 61.842 60.000 0.00 0.00 38.48 5.19
1705 1789 1.377333 GACACCTGCACCTAAGGCC 60.377 63.158 0.00 0.00 38.48 5.19
1706 1790 1.377333 GGACACCTGCACCTAAGGC 60.377 63.158 0.00 0.00 38.48 4.35
1719 1803 2.983592 CCGGCCCAACTTGGACAC 60.984 66.667 9.61 0.00 40.96 3.67
1828 1915 8.500238 AGTTCTTTCCTAACCCTCTTTCTTTTA 58.500 33.333 0.00 0.00 0.00 1.52
1835 1922 4.202577 CCCAAGTTCTTTCCTAACCCTCTT 60.203 45.833 0.00 0.00 0.00 2.85
1869 1969 5.901552 TCATTTTTGTGAGTCCAGGAAAAC 58.098 37.500 0.00 0.00 0.00 2.43
1876 1976 4.705110 TCCTCTCATTTTTGTGAGTCCA 57.295 40.909 4.07 0.00 44.66 4.02
1892 1992 5.474876 CAGGCTAGTTTTGTCAAATTCCTCT 59.525 40.000 0.00 0.00 0.00 3.69
1949 2049 6.267471 TCAAACTTGCCTGAGTTAAATCCAAT 59.733 34.615 0.00 0.00 38.86 3.16
2115 2217 3.702045 CGACTCAACTTCCTATCCTTCCT 59.298 47.826 0.00 0.00 0.00 3.36
2145 2247 9.199982 CACATTTGCATTATTCTTCAACTCTTT 57.800 29.630 0.00 0.00 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.