Multiple sequence alignment - TraesCS4A01G171400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G171400 chr4A 100.000 6757 0 0 1 6757 434084059 434077303 0.000000e+00 12478.0
1 TraesCS4A01G171400 chr4A 82.222 1125 149 24 2026 3135 737376679 737375591 0.000000e+00 922.0
2 TraesCS4A01G171400 chr4A 91.304 184 14 1 6074 6255 619185864 619186047 4.050000e-62 250.0
3 TraesCS4A01G171400 chr4A 87.248 149 16 2 3257 3402 684030326 684030178 4.190000e-37 167.0
4 TraesCS4A01G171400 chr4A 87.248 149 16 2 3257 3402 684056783 684056635 4.190000e-37 167.0
5 TraesCS4A01G171400 chr4A 83.871 124 12 7 6087 6207 231462821 231462939 1.990000e-20 111.0
6 TraesCS4A01G171400 chr4D 96.530 4496 104 26 1597 6076 131373300 131377759 0.000000e+00 7391.0
7 TraesCS4A01G171400 chr4D 91.686 1299 60 13 292 1559 131372019 131373300 0.000000e+00 1757.0
8 TraesCS4A01G171400 chr4D 95.582 498 21 1 6254 6751 131377758 131378254 0.000000e+00 797.0
9 TraesCS4A01G171400 chr4D 91.667 48 3 1 569 616 14425381 14425335 1.570000e-06 65.8
10 TraesCS4A01G171400 chr4B 97.844 1948 35 3 3147 5093 166703527 166701586 0.000000e+00 3358.0
11 TraesCS4A01G171400 chr4B 96.575 1489 41 4 1597 3078 166705252 166703767 0.000000e+00 2459.0
12 TraesCS4A01G171400 chr4B 96.341 984 22 7 5102 6076 166701411 166700433 0.000000e+00 1605.0
13 TraesCS4A01G171400 chr4B 94.639 1026 50 4 544 1565 166706270 166705246 0.000000e+00 1585.0
14 TraesCS4A01G171400 chr4B 95.437 504 23 0 6254 6757 166700434 166699931 0.000000e+00 804.0
15 TraesCS4A01G171400 chr4B 85.714 252 17 8 252 502 166706513 166706280 1.460000e-61 248.0
16 TraesCS4A01G171400 chr5A 83.037 1126 132 29 2026 3136 567117658 567116577 0.000000e+00 966.0
17 TraesCS4A01G171400 chr5A 92.340 235 18 0 1 235 273444891 273445125 1.090000e-87 335.0
18 TraesCS4A01G171400 chr5A 95.041 121 6 0 6135 6255 669570191 669570311 2.490000e-44 191.0
19 TraesCS4A01G171400 chr5A 94.262 122 7 0 6135 6256 1801881 1802002 3.220000e-43 187.0
20 TraesCS4A01G171400 chr5A 87.195 164 18 2 3257 3417 659134629 659134792 4.160000e-42 183.0
21 TraesCS4A01G171400 chr5A 84.568 162 25 0 3820 3981 375561254 375561093 1.950000e-35 161.0
22 TraesCS4A01G171400 chr5A 84.568 162 25 0 3820 3981 672324735 672324574 1.950000e-35 161.0
23 TraesCS4A01G171400 chr5A 84.568 162 25 0 3820 3981 680493756 680493595 1.950000e-35 161.0
24 TraesCS4A01G171400 chr5A 83.200 125 16 3 6075 6194 503786758 503786882 7.160000e-20 110.0
25 TraesCS4A01G171400 chr1B 82.136 1114 148 24 2037 3135 461898964 461900041 0.000000e+00 907.0
26 TraesCS4A01G171400 chr1B 83.333 162 27 0 3820 3981 9085967 9086128 4.220000e-32 150.0
27 TraesCS4A01G171400 chr7D 81.517 1147 138 28 2020 3136 118441289 118442391 0.000000e+00 876.0
28 TraesCS4A01G171400 chr7D 88.623 167 16 1 3257 3420 118442417 118442583 4.130000e-47 200.0
29 TraesCS4A01G171400 chr7D 85.106 94 14 0 158 251 388678442 388678349 5.580000e-16 97.1
30 TraesCS4A01G171400 chr6D 80.742 862 97 28 2301 3136 432973908 432973090 5.790000e-170 608.0
31 TraesCS4A01G171400 chr6D 85.477 241 32 2 2026 2264 432974146 432973907 1.460000e-61 248.0
32 TraesCS4A01G171400 chr6D 88.623 167 16 1 3257 3420 432973064 432972898 4.130000e-47 200.0
33 TraesCS4A01G171400 chr6D 84.568 162 25 0 3820 3981 407195095 407194934 1.950000e-35 161.0
34 TraesCS4A01G171400 chr1A 92.771 249 18 0 3 251 341484909 341485157 1.790000e-95 361.0
35 TraesCS4A01G171400 chr1A 93.548 124 8 0 6135 6258 33222147 33222024 1.160000e-42 185.0
36 TraesCS4A01G171400 chr1A 84.568 162 25 0 3820 3981 543477414 543477253 1.950000e-35 161.0
37 TraesCS4A01G171400 chr1A 84.337 166 15 9 6074 6237 579216227 579216071 1.170000e-32 152.0
38 TraesCS4A01G171400 chr1A 79.255 188 25 10 6074 6255 306151212 306151033 1.190000e-22 119.0
39 TraesCS4A01G171400 chr1A 84.167 120 10 8 6091 6207 82705465 82705578 2.580000e-19 108.0
40 TraesCS4A01G171400 chr3D 87.179 234 28 2 3330 3561 20756587 20756820 1.440000e-66 265.0
41 TraesCS4A01G171400 chr3D 93.056 72 4 1 538 608 313907483 313907554 3.330000e-18 104.0
42 TraesCS4A01G171400 chr6B 88.372 172 20 0 2367 2538 600607217 600607046 2.470000e-49 207.0
43 TraesCS4A01G171400 chr6B 87.931 58 5 2 6062 6117 296183774 296183717 4.370000e-07 67.6
44 TraesCS4A01G171400 chr3B 88.372 172 20 0 2367 2538 168298557 168298728 2.470000e-49 207.0
45 TraesCS4A01G171400 chr3B 92.248 129 10 0 6135 6263 117922517 117922389 4.160000e-42 183.0
46 TraesCS4A01G171400 chr3B 83.951 162 26 0 3820 3981 8724296 8724135 9.070000e-34 156.0
47 TraesCS4A01G171400 chr3B 79.310 174 23 9 6088 6255 145574519 145574685 7.160000e-20 110.0
48 TraesCS4A01G171400 chr3B 91.781 73 4 2 538 609 405641363 405641292 4.310000e-17 100.0
49 TraesCS4A01G171400 chr2B 88.372 172 20 0 2367 2538 623526038 623525867 2.470000e-49 207.0
50 TraesCS4A01G171400 chr7A 82.773 238 29 6 15 251 608224905 608224679 1.150000e-47 202.0
51 TraesCS4A01G171400 chr7A 94.262 122 7 0 6135 6256 57868107 57868228 3.220000e-43 187.0
52 TraesCS4A01G171400 chr2A 94.262 122 7 0 6135 6256 496466692 496466813 3.220000e-43 187.0
53 TraesCS4A01G171400 chr7B 92.308 130 10 0 6135 6264 21562025 21561896 1.160000e-42 185.0
54 TraesCS4A01G171400 chr6A 93.548 124 8 0 6135 6258 461607661 461607538 1.160000e-42 185.0
55 TraesCS4A01G171400 chrUn 87.248 149 16 2 3257 3402 393662566 393662418 4.190000e-37 167.0
56 TraesCS4A01G171400 chr2D 84.277 159 21 3 6075 6231 172390395 172390239 1.170000e-32 152.0
57 TraesCS4A01G171400 chr3A 89.320 103 9 2 3175 3277 28424631 28424731 1.980000e-25 128.0
58 TraesCS4A01G171400 chr3A 95.161 62 3 0 3257 3318 199136686 199136747 1.550000e-16 99.0
59 TraesCS4A01G171400 chr1D 84.034 119 10 8 6091 6207 327109235 327109346 9.270000e-19 106.0
60 TraesCS4A01G171400 chr1D 96.154 52 2 0 196 247 202314364 202314415 1.210000e-12 86.1
61 TraesCS4A01G171400 chr5B 89.474 57 2 2 6059 6115 568801066 568801014 1.220000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G171400 chr4A 434077303 434084059 6756 True 12478.0 12478 100.000000 1 6757 1 chr4A.!!$R1 6756
1 TraesCS4A01G171400 chr4A 737375591 737376679 1088 True 922.0 922 82.222000 2026 3135 1 chr4A.!!$R4 1109
2 TraesCS4A01G171400 chr4D 131372019 131378254 6235 False 3315.0 7391 94.599333 292 6751 3 chr4D.!!$F1 6459
3 TraesCS4A01G171400 chr4B 166699931 166706513 6582 True 1676.5 3358 94.425000 252 6757 6 chr4B.!!$R1 6505
4 TraesCS4A01G171400 chr5A 567116577 567117658 1081 True 966.0 966 83.037000 2026 3136 1 chr5A.!!$R2 1110
5 TraesCS4A01G171400 chr1B 461898964 461900041 1077 False 907.0 907 82.136000 2037 3135 1 chr1B.!!$F2 1098
6 TraesCS4A01G171400 chr7D 118441289 118442583 1294 False 538.0 876 85.070000 2020 3420 2 chr7D.!!$F1 1400
7 TraesCS4A01G171400 chr6D 432972898 432974146 1248 True 352.0 608 84.947333 2026 3420 3 chr6D.!!$R2 1394

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
533 535 0.036294 CCGTTTCCTTCTGGGGTCTC 60.036 60.000 0.00 0.00 35.33 3.36 F
590 603 0.386476 CCGTGTATTAGGCGTGCCTA 59.614 55.000 16.48 16.48 46.14 3.93 F
1404 1441 0.612732 TCTTGCCCATTTGCTCCCAG 60.613 55.000 0.00 0.00 0.00 4.45 F
1591 1629 1.970640 TCCACTGTAGCTTGCTTCTCA 59.029 47.619 0.00 0.00 0.00 3.27 F
2273 2318 2.020720 TGTTTGGAATGACAAGTGCGT 58.979 42.857 0.00 0.00 0.00 5.24 F
3142 3410 2.212812 TGTTGCCTCACATATTGCCA 57.787 45.000 0.00 0.00 0.00 4.92 F
4929 5200 0.888736 ATGGCGCTGTAGTTTGTGCA 60.889 50.000 7.64 0.00 40.98 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2475 2520 0.110104 AGCCCTTCATCCAGCATAGC 59.890 55.000 0.00 0.00 0.00 2.97 R
2687 2733 2.717639 AGACCCCAGTATTGACATGC 57.282 50.000 0.00 0.00 0.00 4.06 R
3150 3418 0.467844 TGGCAACAGTGAGGCAACAT 60.468 50.000 12.56 0.00 46.17 2.71 R
3151 3419 1.077140 TGGCAACAGTGAGGCAACA 60.077 52.632 12.56 1.30 46.17 3.33 R
3870 4141 0.723981 GCAGGATCGACTGAAGCAAC 59.276 55.000 7.19 0.00 40.97 4.17 R
5097 5368 1.269936 GGGCAGCATGAATGTTATGGC 60.270 52.381 0.00 9.03 39.69 4.40 R
6001 6451 0.107214 ATAACATGTGGGCCCAGACG 60.107 55.000 29.55 21.54 0.00 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.335082 CGCGGACACAATGATTCTTAAA 57.665 40.909 0.00 0.00 0.00 1.52
22 23 4.334443 CGCGGACACAATGATTCTTAAAG 58.666 43.478 0.00 0.00 0.00 1.85
23 24 4.142902 CGCGGACACAATGATTCTTAAAGT 60.143 41.667 0.00 0.00 0.00 2.66
24 25 5.616866 CGCGGACACAATGATTCTTAAAGTT 60.617 40.000 0.00 0.00 0.00 2.66
25 26 6.149633 GCGGACACAATGATTCTTAAAGTTT 58.850 36.000 0.00 0.00 0.00 2.66
26 27 6.640907 GCGGACACAATGATTCTTAAAGTTTT 59.359 34.615 0.00 0.00 0.00 2.43
27 28 7.148967 GCGGACACAATGATTCTTAAAGTTTTC 60.149 37.037 0.00 0.00 0.00 2.29
28 29 7.059488 CGGACACAATGATTCTTAAAGTTTTCG 59.941 37.037 0.00 0.00 0.00 3.46
29 30 7.148967 GGACACAATGATTCTTAAAGTTTTCGC 60.149 37.037 0.00 0.00 0.00 4.70
30 31 6.359617 ACACAATGATTCTTAAAGTTTTCGCG 59.640 34.615 0.00 0.00 0.00 5.87
31 32 6.359617 CACAATGATTCTTAAAGTTTTCGCGT 59.640 34.615 5.77 0.00 0.00 6.01
32 33 6.915843 ACAATGATTCTTAAAGTTTTCGCGTT 59.084 30.769 5.77 0.00 0.00 4.84
33 34 6.911484 ATGATTCTTAAAGTTTTCGCGTTG 57.089 33.333 5.77 0.00 0.00 4.10
34 35 5.812652 TGATTCTTAAAGTTTTCGCGTTGT 58.187 33.333 5.77 0.00 0.00 3.32
35 36 6.259638 TGATTCTTAAAGTTTTCGCGTTGTT 58.740 32.000 5.77 0.00 0.00 2.83
36 37 7.408123 TGATTCTTAAAGTTTTCGCGTTGTTA 58.592 30.769 5.77 0.00 0.00 2.41
37 38 8.071368 TGATTCTTAAAGTTTTCGCGTTGTTAT 58.929 29.630 5.77 0.00 0.00 1.89
38 39 8.791355 ATTCTTAAAGTTTTCGCGTTGTTATT 57.209 26.923 5.77 0.00 0.00 1.40
39 40 9.881529 ATTCTTAAAGTTTTCGCGTTGTTATTA 57.118 25.926 5.77 0.00 0.00 0.98
40 41 9.713740 TTCTTAAAGTTTTCGCGTTGTTATTAA 57.286 25.926 5.77 6.37 0.00 1.40
41 42 9.881529 TCTTAAAGTTTTCGCGTTGTTATTAAT 57.118 25.926 5.77 0.00 0.00 1.40
43 44 9.661187 TTAAAGTTTTCGCGTTGTTATTAATCA 57.339 25.926 5.77 0.00 0.00 2.57
44 45 7.543127 AAGTTTTCGCGTTGTTATTAATCAC 57.457 32.000 5.77 0.00 0.00 3.06
45 46 6.894828 AGTTTTCGCGTTGTTATTAATCACT 58.105 32.000 5.77 0.00 0.00 3.41
46 47 6.795114 AGTTTTCGCGTTGTTATTAATCACTG 59.205 34.615 5.77 0.00 0.00 3.66
47 48 4.850859 TCGCGTTGTTATTAATCACTGG 57.149 40.909 5.77 0.00 0.00 4.00
48 49 3.062909 TCGCGTTGTTATTAATCACTGGC 59.937 43.478 5.77 0.00 0.00 4.85
49 50 3.350912 GCGTTGTTATTAATCACTGGCG 58.649 45.455 0.00 0.00 0.00 5.69
50 51 3.350912 CGTTGTTATTAATCACTGGCGC 58.649 45.455 0.00 0.00 0.00 6.53
51 52 3.063452 CGTTGTTATTAATCACTGGCGCT 59.937 43.478 7.64 0.00 0.00 5.92
52 53 4.588278 GTTGTTATTAATCACTGGCGCTC 58.412 43.478 7.64 0.00 0.00 5.03
53 54 3.867857 TGTTATTAATCACTGGCGCTCA 58.132 40.909 7.64 2.39 0.00 4.26
61 62 4.320456 CTGGCGCTCAGGTGGTGT 62.320 66.667 7.64 0.00 39.76 4.16
62 63 4.624364 TGGCGCTCAGGTGGTGTG 62.624 66.667 7.64 0.00 0.00 3.82
64 65 4.626081 GCGCTCAGGTGGTGTGGT 62.626 66.667 0.00 0.00 0.00 4.16
65 66 2.666190 CGCTCAGGTGGTGTGGTG 60.666 66.667 0.00 0.00 0.00 4.17
66 67 2.281761 GCTCAGGTGGTGTGGTGG 60.282 66.667 0.00 0.00 0.00 4.61
67 68 3.120086 GCTCAGGTGGTGTGGTGGT 62.120 63.158 0.00 0.00 0.00 4.16
68 69 1.531748 CTCAGGTGGTGTGGTGGTT 59.468 57.895 0.00 0.00 0.00 3.67
69 70 0.762418 CTCAGGTGGTGTGGTGGTTA 59.238 55.000 0.00 0.00 0.00 2.85
70 71 0.762418 TCAGGTGGTGTGGTGGTTAG 59.238 55.000 0.00 0.00 0.00 2.34
71 72 0.889186 CAGGTGGTGTGGTGGTTAGC 60.889 60.000 0.00 0.00 0.00 3.09
72 73 1.060163 AGGTGGTGTGGTGGTTAGCT 61.060 55.000 0.00 0.00 0.00 3.32
73 74 0.889186 GGTGGTGTGGTGGTTAGCTG 60.889 60.000 0.00 0.00 0.00 4.24
74 75 0.107831 GTGGTGTGGTGGTTAGCTGA 59.892 55.000 0.00 0.00 0.00 4.26
75 76 1.064003 TGGTGTGGTGGTTAGCTGAT 58.936 50.000 0.00 0.00 0.00 2.90
76 77 1.423541 TGGTGTGGTGGTTAGCTGATT 59.576 47.619 0.00 0.00 0.00 2.57
77 78 2.640332 TGGTGTGGTGGTTAGCTGATTA 59.360 45.455 0.00 0.00 0.00 1.75
78 79 3.265737 TGGTGTGGTGGTTAGCTGATTAT 59.734 43.478 0.00 0.00 0.00 1.28
79 80 4.263727 TGGTGTGGTGGTTAGCTGATTATT 60.264 41.667 0.00 0.00 0.00 1.40
80 81 4.705023 GGTGTGGTGGTTAGCTGATTATTT 59.295 41.667 0.00 0.00 0.00 1.40
81 82 5.185056 GGTGTGGTGGTTAGCTGATTATTTT 59.815 40.000 0.00 0.00 0.00 1.82
82 83 6.376018 GGTGTGGTGGTTAGCTGATTATTTTA 59.624 38.462 0.00 0.00 0.00 1.52
83 84 7.415206 GGTGTGGTGGTTAGCTGATTATTTTAG 60.415 40.741 0.00 0.00 0.00 1.85
84 85 7.120726 GTGTGGTGGTTAGCTGATTATTTTAGT 59.879 37.037 0.00 0.00 0.00 2.24
85 86 7.668052 TGTGGTGGTTAGCTGATTATTTTAGTT 59.332 33.333 0.00 0.00 0.00 2.24
86 87 9.169592 GTGGTGGTTAGCTGATTATTTTAGTTA 57.830 33.333 0.00 0.00 0.00 2.24
87 88 9.391006 TGGTGGTTAGCTGATTATTTTAGTTAG 57.609 33.333 0.00 0.00 0.00 2.34
88 89 9.392259 GGTGGTTAGCTGATTATTTTAGTTAGT 57.608 33.333 0.00 0.00 0.00 2.24
94 95 8.214721 AGCTGATTATTTTAGTTAGTTCTGGC 57.785 34.615 0.00 0.00 0.00 4.85
95 96 8.049721 AGCTGATTATTTTAGTTAGTTCTGGCT 58.950 33.333 0.00 0.00 0.00 4.75
96 97 8.125448 GCTGATTATTTTAGTTAGTTCTGGCTG 58.875 37.037 0.00 0.00 0.00 4.85
97 98 7.985476 TGATTATTTTAGTTAGTTCTGGCTGC 58.015 34.615 0.00 0.00 0.00 5.25
98 99 7.609918 TGATTATTTTAGTTAGTTCTGGCTGCA 59.390 33.333 0.50 0.00 0.00 4.41
99 100 5.629079 ATTTTAGTTAGTTCTGGCTGCAC 57.371 39.130 0.50 0.00 0.00 4.57
100 101 2.363788 TAGTTAGTTCTGGCTGCACG 57.636 50.000 0.50 0.00 0.00 5.34
101 102 0.320771 AGTTAGTTCTGGCTGCACGG 60.321 55.000 0.50 0.00 0.00 4.94
102 103 1.671054 TTAGTTCTGGCTGCACGGC 60.671 57.895 0.50 0.00 38.97 5.68
103 104 3.932580 TAGTTCTGGCTGCACGGCG 62.933 63.158 4.80 4.80 42.02 6.46
112 113 3.964221 CTGCACGGCGCGAGTTCTA 62.964 63.158 12.10 0.00 46.97 2.10
113 114 2.582498 GCACGGCGCGAGTTCTAT 60.582 61.111 12.10 0.00 0.00 1.98
114 115 2.165301 GCACGGCGCGAGTTCTATT 61.165 57.895 12.10 0.00 0.00 1.73
115 116 0.868602 GCACGGCGCGAGTTCTATTA 60.869 55.000 12.10 0.00 0.00 0.98
116 117 0.844503 CACGGCGCGAGTTCTATTAC 59.155 55.000 12.10 0.00 0.00 1.89
117 118 0.737219 ACGGCGCGAGTTCTATTACT 59.263 50.000 12.10 0.00 0.00 2.24
118 119 1.268437 ACGGCGCGAGTTCTATTACTC 60.268 52.381 12.10 0.00 40.90 2.59
127 128 5.154215 GAGTTCTATTACTCGTACACGCT 57.846 43.478 0.00 0.00 35.62 5.07
128 129 6.279227 GAGTTCTATTACTCGTACACGCTA 57.721 41.667 0.00 0.00 35.62 4.26
129 130 6.857777 AGTTCTATTACTCGTACACGCTAT 57.142 37.500 0.00 0.00 39.60 2.97
130 131 7.256756 AGTTCTATTACTCGTACACGCTATT 57.743 36.000 0.00 0.00 39.60 1.73
131 132 7.701445 AGTTCTATTACTCGTACACGCTATTT 58.299 34.615 0.00 0.00 39.60 1.40
132 133 8.186821 AGTTCTATTACTCGTACACGCTATTTT 58.813 33.333 0.00 0.00 39.60 1.82
133 134 8.801913 GTTCTATTACTCGTACACGCTATTTTT 58.198 33.333 0.00 0.00 39.60 1.94
151 152 2.196295 TTTTGTGTTTTCTTCGCGGG 57.804 45.000 6.13 0.00 0.00 6.13
152 153 1.380524 TTTGTGTTTTCTTCGCGGGA 58.619 45.000 6.13 0.00 0.00 5.14
153 154 0.658897 TTGTGTTTTCTTCGCGGGAC 59.341 50.000 6.13 0.00 0.00 4.46
154 155 0.462225 TGTGTTTTCTTCGCGGGACA 60.462 50.000 6.13 0.00 0.00 4.02
155 156 0.658897 GTGTTTTCTTCGCGGGACAA 59.341 50.000 6.13 1.75 0.00 3.18
156 157 1.265905 GTGTTTTCTTCGCGGGACAAT 59.734 47.619 6.13 0.00 0.00 2.71
157 158 1.533731 TGTTTTCTTCGCGGGACAATC 59.466 47.619 6.13 0.00 0.00 2.67
158 159 0.793861 TTTTCTTCGCGGGACAATCG 59.206 50.000 6.13 0.00 0.00 3.34
159 160 0.038067 TTTCTTCGCGGGACAATCGA 60.038 50.000 6.13 0.00 0.00 3.59
160 161 0.174845 TTCTTCGCGGGACAATCGAT 59.825 50.000 6.13 0.00 31.96 3.59
161 162 0.248907 TCTTCGCGGGACAATCGATC 60.249 55.000 6.13 0.00 31.96 3.69
162 163 1.540607 CTTCGCGGGACAATCGATCG 61.541 60.000 9.36 9.36 31.96 3.69
163 164 3.692367 CGCGGGACAATCGATCGC 61.692 66.667 11.09 15.98 42.51 4.58
165 166 2.278596 CGGGACAATCGATCGCGT 60.279 61.111 11.09 7.32 44.73 6.01
166 167 2.293627 CGGGACAATCGATCGCGTC 61.294 63.158 11.09 15.68 44.73 5.19
167 168 1.949631 GGGACAATCGATCGCGTCC 60.950 63.158 28.62 28.62 45.95 4.79
168 169 1.949631 GGACAATCGATCGCGTCCC 60.950 63.158 27.34 15.13 41.77 4.46
169 170 1.065928 GACAATCGATCGCGTCCCT 59.934 57.895 11.09 0.00 38.98 4.20
170 171 0.527817 GACAATCGATCGCGTCCCTT 60.528 55.000 11.09 0.00 38.98 3.95
171 172 0.806102 ACAATCGATCGCGTCCCTTG 60.806 55.000 11.09 10.29 38.98 3.61
172 173 1.883084 AATCGATCGCGTCCCTTGC 60.883 57.895 11.09 0.00 38.98 4.01
194 195 2.123769 GGCCAGCCCATATGTGCA 60.124 61.111 12.86 0.00 0.00 4.57
195 196 2.198287 GGCCAGCCCATATGTGCAG 61.198 63.158 12.86 4.25 0.00 4.41
196 197 2.198287 GCCAGCCCATATGTGCAGG 61.198 63.158 15.79 15.79 37.22 4.85
197 198 2.198287 CCAGCCCATATGTGCAGGC 61.198 63.158 12.86 12.15 46.13 4.85
199 200 3.969802 GCCCATATGTGCAGGCGC 61.970 66.667 5.19 0.00 35.30 6.53
200 201 3.653009 CCCATATGTGCAGGCGCG 61.653 66.667 0.00 0.00 42.97 6.86
201 202 2.896854 CCATATGTGCAGGCGCGT 60.897 61.111 8.43 0.00 42.97 6.01
202 203 2.325511 CATATGTGCAGGCGCGTG 59.674 61.111 24.99 24.99 42.97 5.34
203 204 2.896854 ATATGTGCAGGCGCGTGG 60.897 61.111 29.18 12.82 42.97 4.94
217 218 3.056328 GTGGGCGCTGGAACCTTC 61.056 66.667 7.64 0.00 0.00 3.46
218 219 3.565214 TGGGCGCTGGAACCTTCA 61.565 61.111 7.64 0.00 0.00 3.02
219 220 2.282180 GGGCGCTGGAACCTTCAA 60.282 61.111 7.64 0.00 0.00 2.69
220 221 2.626780 GGGCGCTGGAACCTTCAAC 61.627 63.158 7.64 0.00 0.00 3.18
221 222 2.626780 GGCGCTGGAACCTTCAACC 61.627 63.158 7.64 0.00 0.00 3.77
222 223 2.966309 GCGCTGGAACCTTCAACCG 61.966 63.158 0.00 0.00 0.00 4.44
223 224 2.325082 CGCTGGAACCTTCAACCGG 61.325 63.158 0.00 0.00 0.00 5.28
224 225 2.626780 GCTGGAACCTTCAACCGGC 61.627 63.158 0.00 0.00 46.40 6.13
225 226 2.281208 TGGAACCTTCAACCGGCG 60.281 61.111 0.00 0.00 0.00 6.46
226 227 3.733960 GGAACCTTCAACCGGCGC 61.734 66.667 0.00 0.00 0.00 6.53
227 228 2.975799 GAACCTTCAACCGGCGCA 60.976 61.111 10.83 0.00 0.00 6.09
228 229 2.966309 GAACCTTCAACCGGCGCAG 61.966 63.158 10.83 4.65 0.00 5.18
229 230 3.469863 AACCTTCAACCGGCGCAGA 62.470 57.895 10.83 0.00 0.00 4.26
230 231 2.668212 CCTTCAACCGGCGCAGAA 60.668 61.111 10.83 3.98 0.00 3.02
231 232 2.680913 CCTTCAACCGGCGCAGAAG 61.681 63.158 20.07 20.07 37.74 2.85
232 233 2.668212 TTCAACCGGCGCAGAAGG 60.668 61.111 10.83 9.43 0.00 3.46
242 243 3.425422 GCAGAAGGCGCCCATTAG 58.575 61.111 26.15 11.16 0.00 1.73
243 244 2.189499 GCAGAAGGCGCCCATTAGG 61.189 63.158 26.15 9.56 39.47 2.69
244 245 1.526887 CAGAAGGCGCCCATTAGGA 59.473 57.895 26.15 0.00 38.24 2.94
245 246 0.533755 CAGAAGGCGCCCATTAGGAG 60.534 60.000 26.15 0.90 38.24 3.69
246 247 1.227973 GAAGGCGCCCATTAGGAGG 60.228 63.158 26.15 0.00 38.24 4.30
247 248 1.984288 GAAGGCGCCCATTAGGAGGT 61.984 60.000 26.15 0.00 38.24 3.85
248 249 1.984288 AAGGCGCCCATTAGGAGGTC 61.984 60.000 26.15 0.00 38.24 3.85
249 250 2.111251 GCGCCCATTAGGAGGTCC 59.889 66.667 0.00 0.00 38.24 4.46
250 251 2.829592 CGCCCATTAGGAGGTCCC 59.170 66.667 0.00 0.00 38.24 4.46
261 262 1.683441 GAGGTCCCGGTCAAATGGT 59.317 57.895 0.00 0.00 0.00 3.55
262 263 0.906775 GAGGTCCCGGTCAAATGGTA 59.093 55.000 0.00 0.00 0.00 3.25
263 264 0.909623 AGGTCCCGGTCAAATGGTAG 59.090 55.000 0.00 0.00 0.00 3.18
265 266 0.616891 GTCCCGGTCAAATGGTAGGT 59.383 55.000 0.00 0.00 0.00 3.08
266 267 0.906775 TCCCGGTCAAATGGTAGGTC 59.093 55.000 0.00 0.00 0.00 3.85
267 268 0.909623 CCCGGTCAAATGGTAGGTCT 59.090 55.000 0.00 0.00 0.00 3.85
297 299 1.079819 CCCTGTAGCCTGTGTGTCG 60.080 63.158 0.00 0.00 0.00 4.35
316 318 2.438795 GCCTGTGGTGGGCCTTTA 59.561 61.111 4.53 0.00 43.49 1.85
337 339 7.777910 CCTTTACCCACATGTTTATAATCAGGA 59.222 37.037 13.56 0.00 0.00 3.86
338 340 9.354673 CTTTACCCACATGTTTATAATCAGGAT 57.645 33.333 13.56 0.00 0.00 3.24
508 510 2.568090 GCTCAACGTGCCAATGGG 59.432 61.111 0.00 0.00 37.18 4.00
509 511 2.268076 GCTCAACGTGCCAATGGGT 61.268 57.895 0.00 0.00 36.17 4.51
511 513 1.911293 CTCAACGTGCCAATGGGTCG 61.911 60.000 0.00 4.70 38.73 4.79
512 514 2.112297 AACGTGCCAATGGGTCGT 59.888 55.556 0.00 5.83 44.11 4.34
513 515 1.964373 AACGTGCCAATGGGTCGTC 60.964 57.895 10.88 0.00 42.51 4.20
514 516 3.124921 CGTGCCAATGGGTCGTCC 61.125 66.667 0.00 0.00 36.17 4.79
527 529 0.669625 GTCGTCCCGTTTCCTTCTGG 60.670 60.000 0.00 0.00 0.00 3.86
529 531 1.002502 GTCCCGTTTCCTTCTGGGG 60.003 63.158 0.00 0.00 42.20 4.96
530 532 1.462627 TCCCGTTTCCTTCTGGGGT 60.463 57.895 0.00 0.00 42.20 4.95
531 533 1.002502 CCCGTTTCCTTCTGGGGTC 60.003 63.158 0.00 0.00 38.03 4.46
533 535 0.036294 CCGTTTCCTTCTGGGGTCTC 60.036 60.000 0.00 0.00 35.33 3.36
534 536 0.685097 CGTTTCCTTCTGGGGTCTCA 59.315 55.000 0.00 0.00 35.33 3.27
587 600 2.531376 GCCCGTGTATTAGGCGTGC 61.531 63.158 0.00 0.00 36.84 5.34
588 601 1.885850 CCCGTGTATTAGGCGTGCC 60.886 63.158 1.67 1.67 0.00 5.01
590 603 0.386476 CCGTGTATTAGGCGTGCCTA 59.614 55.000 16.48 16.48 46.14 3.93
722 745 4.143333 ATCGCCGGACGGAACCAG 62.143 66.667 15.99 0.00 43.89 4.00
741 764 4.161295 CCTCCGCCGGCAGATTCA 62.161 66.667 28.98 0.00 0.00 2.57
871 908 1.185618 TCGCCTCTGTACAGGTTGCT 61.186 55.000 22.48 0.00 35.72 3.91
1303 1340 2.370445 CCTGCGGAGGGGTTCTCAT 61.370 63.158 16.49 0.00 44.19 2.90
1371 1408 1.067295 AGAGGTTCACCATGGCAAGA 58.933 50.000 13.04 4.68 38.89 3.02
1396 1433 0.966179 GGGTTTCGTCTTGCCCATTT 59.034 50.000 0.00 0.00 40.76 2.32
1404 1441 0.612732 TCTTGCCCATTTGCTCCCAG 60.613 55.000 0.00 0.00 0.00 4.45
1474 1511 4.015872 ACCGAGAGAGGAGATGAGATAC 57.984 50.000 0.00 0.00 34.73 2.24
1488 1525 6.269315 AGATGAGATACAGTTTTCTACGCTG 58.731 40.000 0.00 0.00 36.41 5.18
1509 1546 7.081349 CGCTGAAGTGTTAATTTATTTGGTCA 58.919 34.615 0.00 0.00 0.00 4.02
1558 1596 7.761409 TGTAGTGTTGATTCATAATGAAAGGC 58.239 34.615 0.00 0.00 40.12 4.35
1559 1597 6.839124 AGTGTTGATTCATAATGAAAGGCA 57.161 33.333 0.00 0.00 40.12 4.75
1560 1598 7.230849 AGTGTTGATTCATAATGAAAGGCAA 57.769 32.000 0.00 0.00 40.12 4.52
1561 1599 7.844009 AGTGTTGATTCATAATGAAAGGCAAT 58.156 30.769 0.00 0.00 40.12 3.56
1562 1600 8.316214 AGTGTTGATTCATAATGAAAGGCAATT 58.684 29.630 0.00 0.00 40.12 2.32
1563 1601 8.598075 GTGTTGATTCATAATGAAAGGCAATTC 58.402 33.333 0.00 0.00 40.12 2.17
1564 1602 8.533657 TGTTGATTCATAATGAAAGGCAATTCT 58.466 29.630 0.00 0.00 40.12 2.40
1565 1603 9.028185 GTTGATTCATAATGAAAGGCAATTCTC 57.972 33.333 0.00 0.00 40.12 2.87
1566 1604 8.296211 TGATTCATAATGAAAGGCAATTCTCA 57.704 30.769 0.00 0.00 40.12 3.27
1567 1605 8.920174 TGATTCATAATGAAAGGCAATTCTCAT 58.080 29.630 0.00 0.00 40.12 2.90
1568 1606 9.408069 GATTCATAATGAAAGGCAATTCTCATC 57.592 33.333 0.00 0.00 40.12 2.92
1569 1607 7.885009 TCATAATGAAAGGCAATTCTCATCA 57.115 32.000 4.94 0.00 0.00 3.07
1570 1608 8.473358 TCATAATGAAAGGCAATTCTCATCAT 57.527 30.769 4.94 0.00 0.00 2.45
1571 1609 8.920174 TCATAATGAAAGGCAATTCTCATCATT 58.080 29.630 0.00 0.00 37.20 2.57
1572 1610 9.193133 CATAATGAAAGGCAATTCTCATCATTC 57.807 33.333 0.00 0.00 36.06 2.67
1573 1611 5.587388 TGAAAGGCAATTCTCATCATTCC 57.413 39.130 4.94 0.00 0.00 3.01
1574 1612 5.018149 TGAAAGGCAATTCTCATCATTCCA 58.982 37.500 4.94 0.00 0.00 3.53
1575 1613 4.996788 AAGGCAATTCTCATCATTCCAC 57.003 40.909 0.00 0.00 0.00 4.02
1576 1614 4.246712 AGGCAATTCTCATCATTCCACT 57.753 40.909 0.00 0.00 0.00 4.00
1577 1615 3.952323 AGGCAATTCTCATCATTCCACTG 59.048 43.478 0.00 0.00 0.00 3.66
1578 1616 3.698040 GGCAATTCTCATCATTCCACTGT 59.302 43.478 0.00 0.00 0.00 3.55
1579 1617 4.883585 GGCAATTCTCATCATTCCACTGTA 59.116 41.667 0.00 0.00 0.00 2.74
1580 1618 5.008415 GGCAATTCTCATCATTCCACTGTAG 59.992 44.000 0.00 0.00 0.00 2.74
1581 1619 5.505324 GCAATTCTCATCATTCCACTGTAGC 60.505 44.000 0.00 0.00 0.00 3.58
1582 1620 5.627182 ATTCTCATCATTCCACTGTAGCT 57.373 39.130 0.00 0.00 0.00 3.32
1583 1621 5.426689 TTCTCATCATTCCACTGTAGCTT 57.573 39.130 0.00 0.00 0.00 3.74
1584 1622 4.763073 TCTCATCATTCCACTGTAGCTTG 58.237 43.478 0.00 0.00 0.00 4.01
1585 1623 3.273434 TCATCATTCCACTGTAGCTTGC 58.727 45.455 0.00 0.00 0.00 4.01
1586 1624 3.054875 TCATCATTCCACTGTAGCTTGCT 60.055 43.478 0.00 0.00 0.00 3.91
1587 1625 3.423539 TCATTCCACTGTAGCTTGCTT 57.576 42.857 0.00 0.00 0.00 3.91
1588 1626 3.338249 TCATTCCACTGTAGCTTGCTTC 58.662 45.455 0.00 0.00 0.00 3.86
1589 1627 3.008375 TCATTCCACTGTAGCTTGCTTCT 59.992 43.478 0.00 0.00 0.00 2.85
1590 1628 2.751166 TCCACTGTAGCTTGCTTCTC 57.249 50.000 0.00 0.00 0.00 2.87
1591 1629 1.970640 TCCACTGTAGCTTGCTTCTCA 59.029 47.619 0.00 0.00 0.00 3.27
1592 1630 2.028658 TCCACTGTAGCTTGCTTCTCAG 60.029 50.000 0.00 9.79 0.00 3.35
1593 1631 2.289320 CCACTGTAGCTTGCTTCTCAGT 60.289 50.000 15.85 15.85 36.73 3.41
1594 1632 3.397482 CACTGTAGCTTGCTTCTCAGTT 58.603 45.455 17.64 7.56 34.57 3.16
1595 1633 3.812053 CACTGTAGCTTGCTTCTCAGTTT 59.188 43.478 17.64 3.86 34.57 2.66
1668 1706 7.308450 AGGATGTAAATTGCTAGCTCATCTA 57.692 36.000 17.23 0.00 33.24 1.98
1673 1711 6.763135 TGTAAATTGCTAGCTCATCTAAGTGG 59.237 38.462 17.23 0.00 0.00 4.00
1738 1776 6.823182 TCCATTATTGTGTGGAGTAGAATGTG 59.177 38.462 0.00 0.00 39.51 3.21
1757 1800 5.995565 TGTGATAGGCTGTACAAGTTAGT 57.004 39.130 0.00 0.00 0.00 2.24
1788 1831 8.737168 TCCTGAAATTAATCTTACATCCAGTG 57.263 34.615 0.00 0.00 0.00 3.66
2153 2196 4.842531 TGTCCATCTCCTGCAGATAAAA 57.157 40.909 17.39 0.00 40.20 1.52
2268 2313 7.607991 AGGTAGAATAGTGTTTGGAATGACAAG 59.392 37.037 0.00 0.00 0.00 3.16
2273 2318 2.020720 TGTTTGGAATGACAAGTGCGT 58.979 42.857 0.00 0.00 0.00 5.24
2809 2869 8.225603 AGTTCACATGCTATTATTTAACCAGG 57.774 34.615 0.00 0.00 0.00 4.45
2885 2953 8.768955 CCAATTCCGTTGTTTCATGATTTTAAA 58.231 29.630 0.00 0.00 36.01 1.52
2933 3001 8.606830 AGTTCTTAAATTCTACTGAGGGACATT 58.393 33.333 0.00 0.00 0.00 2.71
2947 3015 5.163405 TGAGGGACATTCATCTGCTTAGTAC 60.163 44.000 0.00 0.00 0.00 2.73
2964 3032 6.183360 GCTTAGTACGAGTATCTTGACACTCA 60.183 42.308 9.34 0.00 0.00 3.41
3142 3410 2.212812 TGTTGCCTCACATATTGCCA 57.787 45.000 0.00 0.00 0.00 4.92
3143 3411 2.523245 TGTTGCCTCACATATTGCCAA 58.477 42.857 0.00 0.00 0.00 4.52
3144 3412 2.896044 TGTTGCCTCACATATTGCCAAA 59.104 40.909 0.00 0.00 0.00 3.28
3145 3413 3.323115 TGTTGCCTCACATATTGCCAAAA 59.677 39.130 0.00 0.00 0.00 2.44
3146 3414 4.202295 TGTTGCCTCACATATTGCCAAAAA 60.202 37.500 0.00 0.00 0.00 1.94
3322 3590 6.669125 TGCACCCAGTTAGTAAGTAAGTTA 57.331 37.500 0.00 0.00 0.00 2.24
3464 3735 7.621428 ATGTCTAAACCAACTGATCATTCTG 57.379 36.000 0.00 0.00 0.00 3.02
3685 3956 5.240403 CGAGGAGAGACACATATTCTCATCA 59.760 44.000 13.53 0.00 44.59 3.07
3762 4033 5.132648 TGTGGGATTCTGGCTGTAAGATAAT 59.867 40.000 0.00 0.00 34.07 1.28
3870 4141 1.267806 ACAAGCAACTCAAGCGAATGG 59.732 47.619 0.00 0.00 37.01 3.16
4032 4303 7.364673 GCATGTTACCCCCTTTATTTGAAGATT 60.365 37.037 0.00 0.00 0.00 2.40
4039 4310 9.560860 ACCCCCTTTATTTGAAGATTTCTTATT 57.439 29.630 0.00 0.00 36.11 1.40
4218 4489 8.601845 TGCATCACAGGTATTGTATATGTAAC 57.398 34.615 0.00 0.00 38.16 2.50
4302 4573 7.148641 ACTTCTATGGCATCTGTTACTATTCG 58.851 38.462 1.65 0.00 0.00 3.34
4328 4599 1.742761 TGCATTAAGGAGAGCAGTGC 58.257 50.000 7.13 7.13 32.48 4.40
4459 4730 9.251792 GCAAAGCATATTCATCATTTATGACAA 57.748 29.630 0.00 0.00 44.42 3.18
4739 5010 4.196193 AGAACCATTCAAACGTTGAGACA 58.804 39.130 0.00 0.00 41.38 3.41
4806 5077 8.033626 TCTGAGATGGAAATCGATATTGATGAG 58.966 37.037 6.20 0.00 0.00 2.90
4929 5200 0.888736 ATGGCGCTGTAGTTTGTGCA 60.889 50.000 7.64 0.00 40.98 4.57
5080 5351 2.680577 GTGCAGGCAAGAAAATTCTGG 58.319 47.619 0.00 0.00 37.65 3.86
5093 5364 9.778993 CAAGAAAATTCTGGTTCACATATACTG 57.221 33.333 0.00 0.00 37.65 2.74
5095 5366 7.611467 AGAAAATTCTGGTTCACATATACTGCA 59.389 33.333 0.00 0.00 35.89 4.41
5096 5367 7.701539 AAATTCTGGTTCACATATACTGCAA 57.298 32.000 0.00 0.00 0.00 4.08
5097 5368 6.932356 ATTCTGGTTCACATATACTGCAAG 57.068 37.500 0.00 0.00 42.29 4.01
5099 5370 3.278574 TGGTTCACATATACTGCAAGCC 58.721 45.455 0.00 0.00 37.60 4.35
5100 5371 3.278574 GGTTCACATATACTGCAAGCCA 58.721 45.455 0.00 0.00 37.60 4.75
5228 5665 4.296621 ACATTTAGTTCTGTACCCCACC 57.703 45.455 0.00 0.00 0.00 4.61
5257 5694 6.516718 TCTTTTATAGGAAGGAAGCGATGAG 58.483 40.000 0.00 0.00 0.00 2.90
5267 5704 3.701542 AGGAAGCGATGAGTGAATCTGTA 59.298 43.478 0.00 0.00 0.00 2.74
5268 5705 4.160439 AGGAAGCGATGAGTGAATCTGTAA 59.840 41.667 0.00 0.00 0.00 2.41
5295 5732 7.661040 AGAAAAGTCATCCATTTTCGTGATTT 58.339 30.769 5.13 0.00 45.66 2.17
5296 5733 7.809806 AGAAAAGTCATCCATTTTCGTGATTTC 59.190 33.333 5.13 0.00 45.66 2.17
5408 5845 1.880027 GTCCCAAAGATGACACCACAC 59.120 52.381 0.00 0.00 0.00 3.82
5453 5890 1.332904 GCTTTGTCACGACTGGTTTCG 60.333 52.381 0.00 0.00 44.87 3.46
5518 5955 3.181455 TGTCAGTGTTATGCTGTCCTGTT 60.181 43.478 0.00 0.00 35.60 3.16
5898 6342 5.948742 TCTTGAGGGGTGTTTTGATTTTT 57.051 34.783 0.00 0.00 0.00 1.94
6001 6451 0.457853 TGTTATGGTCGACAGCTCGC 60.458 55.000 18.91 0.00 39.96 5.03
6079 6529 3.398694 CATGCATGCTGCCTACTCT 57.601 52.632 20.33 0.00 44.23 3.24
6080 6530 1.227639 CATGCATGCTGCCTACTCTC 58.772 55.000 20.33 0.00 44.23 3.20
6081 6531 1.129917 ATGCATGCTGCCTACTCTCT 58.870 50.000 20.33 0.00 44.23 3.10
6082 6532 0.463204 TGCATGCTGCCTACTCTCTC 59.537 55.000 20.33 0.00 44.23 3.20
6083 6533 0.249826 GCATGCTGCCTACTCTCTCC 60.250 60.000 11.37 0.00 37.42 3.71
6084 6534 0.031857 CATGCTGCCTACTCTCTCCG 59.968 60.000 0.00 0.00 0.00 4.63
6085 6535 0.396417 ATGCTGCCTACTCTCTCCGT 60.396 55.000 0.00 0.00 0.00 4.69
6086 6536 0.612174 TGCTGCCTACTCTCTCCGTT 60.612 55.000 0.00 0.00 0.00 4.44
6087 6537 0.101579 GCTGCCTACTCTCTCCGTTC 59.898 60.000 0.00 0.00 0.00 3.95
6088 6538 1.757682 CTGCCTACTCTCTCCGTTCT 58.242 55.000 0.00 0.00 0.00 3.01
6089 6539 2.096248 CTGCCTACTCTCTCCGTTCTT 58.904 52.381 0.00 0.00 0.00 2.52
6090 6540 3.280295 CTGCCTACTCTCTCCGTTCTTA 58.720 50.000 0.00 0.00 0.00 2.10
6091 6541 3.693807 TGCCTACTCTCTCCGTTCTTAA 58.306 45.455 0.00 0.00 0.00 1.85
6092 6542 4.084287 TGCCTACTCTCTCCGTTCTTAAA 58.916 43.478 0.00 0.00 0.00 1.52
6093 6543 4.710375 TGCCTACTCTCTCCGTTCTTAAAT 59.290 41.667 0.00 0.00 0.00 1.40
6094 6544 5.889853 TGCCTACTCTCTCCGTTCTTAAATA 59.110 40.000 0.00 0.00 0.00 1.40
6095 6545 6.550108 TGCCTACTCTCTCCGTTCTTAAATAT 59.450 38.462 0.00 0.00 0.00 1.28
6096 6546 7.069578 TGCCTACTCTCTCCGTTCTTAAATATT 59.930 37.037 0.00 0.00 0.00 1.28
6097 6547 7.927092 GCCTACTCTCTCCGTTCTTAAATATTT 59.073 37.037 5.89 5.89 0.00 1.40
6098 6548 9.250624 CCTACTCTCTCCGTTCTTAAATATTTG 57.749 37.037 11.05 0.00 0.00 2.32
6099 6549 9.804758 CTACTCTCTCCGTTCTTAAATATTTGT 57.195 33.333 11.05 0.00 0.00 2.83
6100 6550 8.705048 ACTCTCTCCGTTCTTAAATATTTGTC 57.295 34.615 11.05 0.00 0.00 3.18
6101 6551 8.532819 ACTCTCTCCGTTCTTAAATATTTGTCT 58.467 33.333 11.05 0.00 0.00 3.41
6102 6552 9.372369 CTCTCTCCGTTCTTAAATATTTGTCTT 57.628 33.333 11.05 0.00 0.00 3.01
6103 6553 9.720769 TCTCTCCGTTCTTAAATATTTGTCTTT 57.279 29.630 11.05 0.00 0.00 2.52
6104 6554 9.974750 CTCTCCGTTCTTAAATATTTGTCTTTC 57.025 33.333 11.05 0.00 0.00 2.62
6105 6555 9.720769 TCTCCGTTCTTAAATATTTGTCTTTCT 57.279 29.630 11.05 0.00 0.00 2.52
6139 6589 9.570468 TTAAATGACTACTAGATACGGATGACT 57.430 33.333 0.00 0.00 0.00 3.41
6141 6591 8.550710 AATGACTACTAGATACGGATGACTAC 57.449 38.462 0.00 0.00 0.00 2.73
6142 6592 7.300556 TGACTACTAGATACGGATGACTACT 57.699 40.000 0.00 0.00 0.00 2.57
6143 6593 8.414629 TGACTACTAGATACGGATGACTACTA 57.585 38.462 0.00 0.00 0.00 1.82
6144 6594 8.522003 TGACTACTAGATACGGATGACTACTAG 58.478 40.741 0.00 0.00 34.14 2.57
6145 6595 8.648698 ACTACTAGATACGGATGACTACTAGA 57.351 38.462 7.19 0.00 32.85 2.43
6146 6596 9.258629 ACTACTAGATACGGATGACTACTAGAT 57.741 37.037 7.19 0.00 32.85 1.98
6149 6599 8.190122 ACTAGATACGGATGACTACTAGATACG 58.810 40.741 7.19 0.00 32.85 3.06
6150 6600 6.339730 AGATACGGATGACTACTAGATACGG 58.660 44.000 0.00 0.00 0.00 4.02
6151 6601 4.613925 ACGGATGACTACTAGATACGGA 57.386 45.455 0.00 0.00 0.00 4.69
6152 6602 5.163281 ACGGATGACTACTAGATACGGAT 57.837 43.478 0.00 0.00 0.00 4.18
6153 6603 4.936411 ACGGATGACTACTAGATACGGATG 59.064 45.833 0.00 0.00 0.00 3.51
6154 6604 4.936411 CGGATGACTACTAGATACGGATGT 59.064 45.833 0.00 0.00 0.00 3.06
6155 6605 6.104665 CGGATGACTACTAGATACGGATGTA 58.895 44.000 0.00 0.00 34.45 2.29
6156 6606 6.762187 CGGATGACTACTAGATACGGATGTAT 59.238 42.308 0.00 0.00 43.97 2.29
6157 6607 7.254488 CGGATGACTACTAGATACGGATGTATG 60.254 44.444 0.00 0.00 41.37 2.39
6158 6608 7.553402 GGATGACTACTAGATACGGATGTATGT 59.447 40.741 0.00 0.00 41.37 2.29
6159 6609 9.597170 GATGACTACTAGATACGGATGTATGTA 57.403 37.037 0.00 0.00 41.37 2.29
6193 6643 9.677567 TTTAAAGTGTAGATTCACTCATTTTGC 57.322 29.630 0.00 0.00 46.25 3.68
6194 6644 7.516198 AAAGTGTAGATTCACTCATTTTGCT 57.484 32.000 0.00 0.00 46.25 3.91
6195 6645 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
6196 6646 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
6197 6647 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
6198 6648 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
6199 6649 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
6200 6650 4.631813 AGATTCACTCATTTTGCTCCGTAC 59.368 41.667 0.00 0.00 0.00 3.67
6201 6651 2.333926 TCACTCATTTTGCTCCGTACG 58.666 47.619 8.69 8.69 0.00 3.67
6202 6652 2.066262 CACTCATTTTGCTCCGTACGT 58.934 47.619 15.21 0.00 0.00 3.57
6203 6653 3.057386 TCACTCATTTTGCTCCGTACGTA 60.057 43.478 15.21 0.00 0.00 3.57
6204 6654 3.303495 CACTCATTTTGCTCCGTACGTAG 59.697 47.826 15.21 9.26 0.00 3.51
6206 6656 3.504863 TCATTTTGCTCCGTACGTAGTC 58.495 45.455 15.21 5.03 43.93 2.59
6207 6657 3.057386 TCATTTTGCTCCGTACGTAGTCA 60.057 43.478 15.21 7.62 43.93 3.41
6208 6658 3.581024 TTTTGCTCCGTACGTAGTCAT 57.419 42.857 15.21 0.00 43.93 3.06
6209 6659 3.581024 TTTGCTCCGTACGTAGTCATT 57.419 42.857 15.21 0.00 43.93 2.57
6210 6660 3.581024 TTGCTCCGTACGTAGTCATTT 57.419 42.857 15.21 0.00 43.93 2.32
6211 6661 2.871133 TGCTCCGTACGTAGTCATTTG 58.129 47.619 15.21 0.00 43.93 2.32
6212 6662 2.229543 TGCTCCGTACGTAGTCATTTGT 59.770 45.455 15.21 0.00 43.93 2.83
6213 6663 3.248266 GCTCCGTACGTAGTCATTTGTT 58.752 45.455 15.21 0.00 43.93 2.83
6214 6664 4.082841 TGCTCCGTACGTAGTCATTTGTTA 60.083 41.667 15.21 0.00 43.93 2.41
6215 6665 4.858692 GCTCCGTACGTAGTCATTTGTTAA 59.141 41.667 15.21 0.00 43.93 2.01
6216 6666 5.345741 GCTCCGTACGTAGTCATTTGTTAAA 59.654 40.000 15.21 0.00 43.93 1.52
6217 6667 6.128849 GCTCCGTACGTAGTCATTTGTTAAAA 60.129 38.462 15.21 0.00 43.93 1.52
6218 6668 7.412237 GCTCCGTACGTAGTCATTTGTTAAAAT 60.412 37.037 15.21 0.00 43.93 1.82
6249 6699 9.524106 AGAAAAACAAGTATTTAAAAACGGAGG 57.476 29.630 0.00 0.00 0.00 4.30
6250 6700 8.651391 AAAAACAAGTATTTAAAAACGGAGGG 57.349 30.769 0.00 0.00 0.00 4.30
6251 6701 7.585579 AAACAAGTATTTAAAAACGGAGGGA 57.414 32.000 0.00 0.00 0.00 4.20
6252 6702 6.812879 ACAAGTATTTAAAAACGGAGGGAG 57.187 37.500 0.00 0.00 0.00 4.30
6253 6703 6.301486 ACAAGTATTTAAAAACGGAGGGAGT 58.699 36.000 0.00 0.00 0.00 3.85
6254 6704 7.452562 ACAAGTATTTAAAAACGGAGGGAGTA 58.547 34.615 0.00 0.00 0.00 2.59
6258 6708 9.524496 AGTATTTAAAAACGGAGGGAGTATTTT 57.476 29.630 0.00 0.00 0.00 1.82
6265 6715 4.930696 ACGGAGGGAGTATTTTGGAAAAT 58.069 39.130 3.02 3.02 41.24 1.82
6281 6731 5.324409 TGGAAAATAGCACATTGTTCTCCT 58.676 37.500 0.00 0.00 0.00 3.69
6397 6847 6.828785 AGGCTCGTAATTTTACAGGATCAATT 59.171 34.615 0.00 0.00 33.28 2.32
6411 6861 8.095452 ACAGGATCAATTAGTTGGAGATTAGT 57.905 34.615 0.00 0.00 35.99 2.24
6500 6950 0.111253 ACCTTCCAACCTCTTGCTGG 59.889 55.000 0.00 0.00 0.00 4.85
6514 6964 1.927487 TGCTGGCATTTCATTCCACT 58.073 45.000 0.00 0.00 0.00 4.00
6533 6983 2.113139 CCACACCACCACTGTCCC 59.887 66.667 0.00 0.00 0.00 4.46
6583 7033 0.613292 AGCGCTTCTTCTCTCCCTCA 60.613 55.000 2.64 0.00 0.00 3.86
6632 7082 1.002792 CGCCGACGATCTTGACTATGA 60.003 52.381 0.00 0.00 43.93 2.15
6678 7128 1.142748 CTCGGATGTCTCCACCAGC 59.857 63.158 0.00 0.00 42.19 4.85
6681 7131 2.581354 GATGTCTCCACCAGCGCT 59.419 61.111 2.64 2.64 0.00 5.92
6687 7137 2.917227 TCCACCAGCGCTGAGACA 60.917 61.111 38.06 16.37 0.00 3.41
6708 7158 2.203509 CCCGAGGCCGACTCCTAT 60.204 66.667 0.00 0.00 43.57 2.57
6735 7185 0.603707 CCAGCGCTGAGAAGAAACCA 60.604 55.000 38.06 0.00 0.00 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.142902 ACTTTAAGAATCATTGTGTCCGCG 60.143 41.667 0.00 0.00 0.00 6.46
2 3 7.059488 CGAAAACTTTAAGAATCATTGTGTCCG 59.941 37.037 0.00 0.00 0.00 4.79
4 5 7.408290 CGCGAAAACTTTAAGAATCATTGTGTC 60.408 37.037 0.00 0.00 0.00 3.67
5 6 6.359617 CGCGAAAACTTTAAGAATCATTGTGT 59.640 34.615 0.00 0.00 0.00 3.72
6 7 6.359617 ACGCGAAAACTTTAAGAATCATTGTG 59.640 34.615 15.93 0.00 0.00 3.33
7 8 6.435428 ACGCGAAAACTTTAAGAATCATTGT 58.565 32.000 15.93 0.00 0.00 2.71
8 9 6.911484 ACGCGAAAACTTTAAGAATCATTG 57.089 33.333 15.93 0.00 0.00 2.82
9 10 6.915843 ACAACGCGAAAACTTTAAGAATCATT 59.084 30.769 15.93 0.00 0.00 2.57
10 11 6.435428 ACAACGCGAAAACTTTAAGAATCAT 58.565 32.000 15.93 0.00 0.00 2.45
13 14 8.791355 AATAACAACGCGAAAACTTTAAGAAT 57.209 26.923 15.93 0.00 0.00 2.40
14 15 9.713740 TTAATAACAACGCGAAAACTTTAAGAA 57.286 25.926 15.93 0.00 0.00 2.52
15 16 9.881529 ATTAATAACAACGCGAAAACTTTAAGA 57.118 25.926 15.93 0.00 0.00 2.10
17 18 9.661187 TGATTAATAACAACGCGAAAACTTTAA 57.339 25.926 15.93 10.43 0.00 1.52
18 19 9.105206 GTGATTAATAACAACGCGAAAACTTTA 57.895 29.630 15.93 0.95 0.00 1.85
19 20 7.858879 AGTGATTAATAACAACGCGAAAACTTT 59.141 29.630 15.93 2.01 0.00 2.66
20 21 7.322699 CAGTGATTAATAACAACGCGAAAACTT 59.677 33.333 15.93 1.24 0.00 2.66
21 22 6.795114 CAGTGATTAATAACAACGCGAAAACT 59.205 34.615 15.93 0.00 0.00 2.66
22 23 6.032042 CCAGTGATTAATAACAACGCGAAAAC 59.968 38.462 15.93 0.00 0.00 2.43
23 24 6.081049 CCAGTGATTAATAACAACGCGAAAA 58.919 36.000 15.93 0.00 0.00 2.29
24 25 5.623335 CCAGTGATTAATAACAACGCGAAA 58.377 37.500 15.93 0.00 0.00 3.46
25 26 4.436317 GCCAGTGATTAATAACAACGCGAA 60.436 41.667 15.93 0.00 0.00 4.70
26 27 3.062909 GCCAGTGATTAATAACAACGCGA 59.937 43.478 15.93 0.00 0.00 5.87
27 28 3.350912 GCCAGTGATTAATAACAACGCG 58.649 45.455 3.53 3.53 0.00 6.01
28 29 3.350912 CGCCAGTGATTAATAACAACGC 58.649 45.455 5.72 2.92 0.00 4.84
29 30 3.063452 AGCGCCAGTGATTAATAACAACG 59.937 43.478 2.29 6.78 0.00 4.10
30 31 4.094294 TGAGCGCCAGTGATTAATAACAAC 59.906 41.667 2.29 0.00 0.00 3.32
31 32 4.257731 TGAGCGCCAGTGATTAATAACAA 58.742 39.130 2.29 0.00 0.00 2.83
32 33 3.867857 TGAGCGCCAGTGATTAATAACA 58.132 40.909 2.29 0.00 0.00 2.41
33 34 3.248602 CCTGAGCGCCAGTGATTAATAAC 59.751 47.826 19.93 0.00 41.33 1.89
34 35 3.118408 ACCTGAGCGCCAGTGATTAATAA 60.118 43.478 19.93 0.00 41.33 1.40
35 36 2.434336 ACCTGAGCGCCAGTGATTAATA 59.566 45.455 19.93 0.00 41.33 0.98
36 37 1.210478 ACCTGAGCGCCAGTGATTAAT 59.790 47.619 19.93 0.00 41.33 1.40
37 38 0.613260 ACCTGAGCGCCAGTGATTAA 59.387 50.000 19.93 0.00 41.33 1.40
38 39 0.108186 CACCTGAGCGCCAGTGATTA 60.108 55.000 19.93 0.00 41.33 1.75
39 40 1.376424 CACCTGAGCGCCAGTGATT 60.376 57.895 19.93 0.00 41.33 2.57
40 41 2.267006 CACCTGAGCGCCAGTGAT 59.733 61.111 19.93 6.85 41.33 3.06
41 42 4.007644 CCACCTGAGCGCCAGTGA 62.008 66.667 19.93 0.00 41.33 3.41
42 43 4.320456 ACCACCTGAGCGCCAGTG 62.320 66.667 19.93 14.80 41.33 3.66
43 44 4.320456 CACCACCTGAGCGCCAGT 62.320 66.667 19.93 4.55 41.33 4.00
44 45 4.320456 ACACCACCTGAGCGCCAG 62.320 66.667 16.22 16.22 42.55 4.85
45 46 4.624364 CACACCACCTGAGCGCCA 62.624 66.667 2.29 0.10 0.00 5.69
47 48 4.626081 ACCACACCACCTGAGCGC 62.626 66.667 0.00 0.00 0.00 5.92
48 49 2.666190 CACCACACCACCTGAGCG 60.666 66.667 0.00 0.00 0.00 5.03
49 50 2.281761 CCACCACACCACCTGAGC 60.282 66.667 0.00 0.00 0.00 4.26
50 51 0.762418 TAACCACCACACCACCTGAG 59.238 55.000 0.00 0.00 0.00 3.35
51 52 0.762418 CTAACCACCACACCACCTGA 59.238 55.000 0.00 0.00 0.00 3.86
52 53 0.889186 GCTAACCACCACACCACCTG 60.889 60.000 0.00 0.00 0.00 4.00
53 54 1.060163 AGCTAACCACCACACCACCT 61.060 55.000 0.00 0.00 0.00 4.00
54 55 0.889186 CAGCTAACCACCACACCACC 60.889 60.000 0.00 0.00 0.00 4.61
55 56 0.107831 TCAGCTAACCACCACACCAC 59.892 55.000 0.00 0.00 0.00 4.16
56 57 1.064003 ATCAGCTAACCACCACACCA 58.936 50.000 0.00 0.00 0.00 4.17
57 58 2.200373 AATCAGCTAACCACCACACC 57.800 50.000 0.00 0.00 0.00 4.16
58 59 5.897377 AAATAATCAGCTAACCACCACAC 57.103 39.130 0.00 0.00 0.00 3.82
59 60 7.172342 ACTAAAATAATCAGCTAACCACCACA 58.828 34.615 0.00 0.00 0.00 4.17
60 61 7.625828 ACTAAAATAATCAGCTAACCACCAC 57.374 36.000 0.00 0.00 0.00 4.16
61 62 9.391006 CTAACTAAAATAATCAGCTAACCACCA 57.609 33.333 0.00 0.00 0.00 4.17
62 63 9.392259 ACTAACTAAAATAATCAGCTAACCACC 57.608 33.333 0.00 0.00 0.00 4.61
68 69 9.326413 GCCAGAACTAACTAAAATAATCAGCTA 57.674 33.333 0.00 0.00 0.00 3.32
69 70 8.049721 AGCCAGAACTAACTAAAATAATCAGCT 58.950 33.333 0.00 0.00 0.00 4.24
70 71 8.125448 CAGCCAGAACTAACTAAAATAATCAGC 58.875 37.037 0.00 0.00 0.00 4.26
71 72 8.125448 GCAGCCAGAACTAACTAAAATAATCAG 58.875 37.037 0.00 0.00 0.00 2.90
72 73 7.609918 TGCAGCCAGAACTAACTAAAATAATCA 59.390 33.333 0.00 0.00 0.00 2.57
73 74 7.910683 GTGCAGCCAGAACTAACTAAAATAATC 59.089 37.037 0.00 0.00 0.00 1.75
74 75 7.414098 CGTGCAGCCAGAACTAACTAAAATAAT 60.414 37.037 0.00 0.00 0.00 1.28
75 76 6.128391 CGTGCAGCCAGAACTAACTAAAATAA 60.128 38.462 0.00 0.00 0.00 1.40
76 77 5.350365 CGTGCAGCCAGAACTAACTAAAATA 59.650 40.000 0.00 0.00 0.00 1.40
77 78 4.154195 CGTGCAGCCAGAACTAACTAAAAT 59.846 41.667 0.00 0.00 0.00 1.82
78 79 3.496884 CGTGCAGCCAGAACTAACTAAAA 59.503 43.478 0.00 0.00 0.00 1.52
79 80 3.064207 CGTGCAGCCAGAACTAACTAAA 58.936 45.455 0.00 0.00 0.00 1.85
80 81 2.611971 CCGTGCAGCCAGAACTAACTAA 60.612 50.000 0.00 0.00 0.00 2.24
81 82 1.067142 CCGTGCAGCCAGAACTAACTA 60.067 52.381 0.00 0.00 0.00 2.24
82 83 0.320771 CCGTGCAGCCAGAACTAACT 60.321 55.000 0.00 0.00 0.00 2.24
83 84 1.912371 GCCGTGCAGCCAGAACTAAC 61.912 60.000 0.00 0.00 0.00 2.34
84 85 1.671054 GCCGTGCAGCCAGAACTAA 60.671 57.895 0.00 0.00 0.00 2.24
85 86 2.047274 GCCGTGCAGCCAGAACTA 60.047 61.111 0.00 0.00 0.00 2.24
94 95 3.964221 TAGAACTCGCGCCGTGCAG 62.964 63.158 0.00 0.00 46.97 4.41
95 96 2.829043 AATAGAACTCGCGCCGTGCA 62.829 55.000 0.00 0.00 46.97 4.57
96 97 0.868602 TAATAGAACTCGCGCCGTGC 60.869 55.000 0.00 0.00 41.47 5.34
97 98 0.844503 GTAATAGAACTCGCGCCGTG 59.155 55.000 0.00 0.42 0.00 4.94
98 99 0.737219 AGTAATAGAACTCGCGCCGT 59.263 50.000 0.00 0.00 0.00 5.68
99 100 1.396644 GAGTAATAGAACTCGCGCCG 58.603 55.000 0.00 0.00 36.80 6.46
105 106 5.154215 AGCGTGTACGAGTAATAGAACTC 57.846 43.478 8.82 0.00 43.02 3.01
106 107 6.857777 ATAGCGTGTACGAGTAATAGAACT 57.142 37.500 8.82 0.00 43.02 3.01
107 108 7.905031 AAATAGCGTGTACGAGTAATAGAAC 57.095 36.000 8.82 0.00 43.02 3.01
108 109 8.915871 AAAAATAGCGTGTACGAGTAATAGAA 57.084 30.769 8.82 0.00 43.02 2.10
131 132 2.163815 TCCCGCGAAGAAAACACAAAAA 59.836 40.909 8.23 0.00 0.00 1.94
132 133 1.743958 TCCCGCGAAGAAAACACAAAA 59.256 42.857 8.23 0.00 0.00 2.44
133 134 1.064357 GTCCCGCGAAGAAAACACAAA 59.936 47.619 8.23 0.00 0.00 2.83
134 135 0.658897 GTCCCGCGAAGAAAACACAA 59.341 50.000 8.23 0.00 0.00 3.33
135 136 0.462225 TGTCCCGCGAAGAAAACACA 60.462 50.000 8.23 0.00 0.00 3.72
136 137 0.658897 TTGTCCCGCGAAGAAAACAC 59.341 50.000 8.23 0.00 0.00 3.32
137 138 1.533731 GATTGTCCCGCGAAGAAAACA 59.466 47.619 8.23 0.00 0.00 2.83
138 139 1.463528 CGATTGTCCCGCGAAGAAAAC 60.464 52.381 8.23 0.25 0.00 2.43
139 140 0.793861 CGATTGTCCCGCGAAGAAAA 59.206 50.000 8.23 5.86 0.00 2.29
140 141 0.038067 TCGATTGTCCCGCGAAGAAA 60.038 50.000 8.23 0.00 0.00 2.52
141 142 0.174845 ATCGATTGTCCCGCGAAGAA 59.825 50.000 8.23 0.00 37.60 2.52
142 143 0.248907 GATCGATTGTCCCGCGAAGA 60.249 55.000 8.23 0.00 37.60 2.87
143 144 1.540607 CGATCGATTGTCCCGCGAAG 61.541 60.000 10.26 0.00 37.60 3.79
144 145 1.587876 CGATCGATTGTCCCGCGAA 60.588 57.895 10.26 0.00 37.60 4.70
145 146 2.025584 CGATCGATTGTCCCGCGA 59.974 61.111 10.26 0.00 38.51 5.87
146 147 3.692367 GCGATCGATTGTCCCGCG 61.692 66.667 21.57 0.00 36.53 6.46
147 148 3.692367 CGCGATCGATTGTCCCGC 61.692 66.667 21.57 15.98 42.11 6.13
148 149 2.278596 ACGCGATCGATTGTCCCG 60.279 61.111 21.57 13.29 39.41 5.14
149 150 1.949631 GGACGCGATCGATTGTCCC 60.950 63.158 29.38 18.35 44.06 4.46
150 151 3.614143 GGACGCGATCGATTGTCC 58.386 61.111 27.41 27.41 43.60 4.02
151 152 0.527817 AAGGGACGCGATCGATTGTC 60.528 55.000 21.57 20.90 39.41 3.18
152 153 0.806102 CAAGGGACGCGATCGATTGT 60.806 55.000 21.57 13.59 39.41 2.71
153 154 1.927210 CAAGGGACGCGATCGATTG 59.073 57.895 21.57 8.40 39.41 2.67
154 155 1.883084 GCAAGGGACGCGATCGATT 60.883 57.895 21.57 3.51 39.41 3.34
155 156 2.279517 GCAAGGGACGCGATCGAT 60.280 61.111 21.57 5.51 39.41 3.59
177 178 2.123769 TGCACATATGGGCTGGCC 60.124 61.111 29.21 14.23 46.62 5.36
178 179 3.440151 CTGCACATATGGGCTGGC 58.560 61.111 29.21 13.62 46.62 4.85
180 181 2.549198 CGCCTGCACATATGGGCTG 61.549 63.158 29.21 27.19 46.62 4.85
181 182 2.203252 CGCCTGCACATATGGGCT 60.203 61.111 29.21 0.00 46.62 5.19
182 183 3.969802 GCGCCTGCACATATGGGC 61.970 66.667 23.43 23.43 46.69 5.36
183 184 3.653009 CGCGCCTGCACATATGGG 61.653 66.667 7.80 3.61 42.97 4.00
184 185 2.896854 ACGCGCCTGCACATATGG 60.897 61.111 5.73 0.00 42.97 2.74
185 186 2.325511 CACGCGCCTGCACATATG 59.674 61.111 5.73 0.00 42.97 1.78
186 187 2.896854 CCACGCGCCTGCACATAT 60.897 61.111 5.73 0.00 42.97 1.78
200 201 3.056328 GAAGGTTCCAGCGCCCAC 61.056 66.667 2.29 0.00 0.00 4.61
201 202 3.126703 TTGAAGGTTCCAGCGCCCA 62.127 57.895 2.29 0.00 0.00 5.36
202 203 2.282180 TTGAAGGTTCCAGCGCCC 60.282 61.111 2.29 0.00 0.00 6.13
203 204 2.626780 GGTTGAAGGTTCCAGCGCC 61.627 63.158 2.29 0.00 0.00 6.53
204 205 2.954611 GGTTGAAGGTTCCAGCGC 59.045 61.111 0.00 0.00 0.00 5.92
205 206 2.325082 CCGGTTGAAGGTTCCAGCG 61.325 63.158 8.07 8.07 41.58 5.18
206 207 2.626780 GCCGGTTGAAGGTTCCAGC 61.627 63.158 1.90 0.00 0.00 4.85
207 208 2.325082 CGCCGGTTGAAGGTTCCAG 61.325 63.158 1.90 0.00 0.00 3.86
208 209 2.281208 CGCCGGTTGAAGGTTCCA 60.281 61.111 1.90 0.00 0.00 3.53
209 210 3.733960 GCGCCGGTTGAAGGTTCC 61.734 66.667 1.90 0.00 0.00 3.62
210 211 2.966309 CTGCGCCGGTTGAAGGTTC 61.966 63.158 4.18 0.00 0.00 3.62
211 212 2.951475 TTCTGCGCCGGTTGAAGGTT 62.951 55.000 4.18 0.00 0.00 3.50
212 213 3.469863 TTCTGCGCCGGTTGAAGGT 62.470 57.895 4.18 0.00 0.00 3.50
213 214 2.668212 TTCTGCGCCGGTTGAAGG 60.668 61.111 4.18 0.00 0.00 3.46
214 215 2.680913 CCTTCTGCGCCGGTTGAAG 61.681 63.158 4.18 11.46 36.59 3.02
215 216 2.668212 CCTTCTGCGCCGGTTGAA 60.668 61.111 4.18 1.93 0.00 2.69
225 226 2.189499 CCTAATGGGCGCCTTCTGC 61.189 63.158 28.56 9.87 0.00 4.26
226 227 0.533755 CTCCTAATGGGCGCCTTCTG 60.534 60.000 28.56 12.78 34.39 3.02
227 228 1.700042 CCTCCTAATGGGCGCCTTCT 61.700 60.000 28.56 13.12 34.39 2.85
228 229 1.227973 CCTCCTAATGGGCGCCTTC 60.228 63.158 28.56 11.61 34.39 3.46
229 230 1.984288 GACCTCCTAATGGGCGCCTT 61.984 60.000 28.56 16.71 34.39 4.35
230 231 2.366972 ACCTCCTAATGGGCGCCT 60.367 61.111 28.56 9.55 34.39 5.52
231 232 2.111251 GACCTCCTAATGGGCGCC 59.889 66.667 21.18 21.18 34.39 6.53
232 233 2.111251 GGACCTCCTAATGGGCGC 59.889 66.667 0.00 0.00 32.08 6.53
233 234 2.829592 GGGACCTCCTAATGGGCG 59.170 66.667 0.00 0.00 32.08 6.13
234 235 2.819284 CCGGGACCTCCTAATGGGC 61.819 68.421 0.00 0.00 35.95 5.36
235 236 1.384082 ACCGGGACCTCCTAATGGG 60.384 63.158 6.32 0.00 35.95 4.00
236 237 0.689745 TGACCGGGACCTCCTAATGG 60.690 60.000 6.32 0.00 35.95 3.16
237 238 1.200519 TTGACCGGGACCTCCTAATG 58.799 55.000 6.32 0.00 35.95 1.90
238 239 1.961133 TTTGACCGGGACCTCCTAAT 58.039 50.000 6.32 0.00 35.95 1.73
239 240 1.557832 CATTTGACCGGGACCTCCTAA 59.442 52.381 6.32 0.00 35.95 2.69
240 241 1.200519 CATTTGACCGGGACCTCCTA 58.799 55.000 6.32 0.00 35.95 2.94
241 242 1.562672 CCATTTGACCGGGACCTCCT 61.563 60.000 6.32 0.00 35.95 3.69
242 243 1.077716 CCATTTGACCGGGACCTCC 60.078 63.158 6.32 0.00 0.00 4.30
243 244 0.906775 TACCATTTGACCGGGACCTC 59.093 55.000 6.32 0.00 0.00 3.85
244 245 0.909623 CTACCATTTGACCGGGACCT 59.090 55.000 6.32 0.00 0.00 3.85
245 246 0.107361 CCTACCATTTGACCGGGACC 60.107 60.000 6.32 0.00 0.00 4.46
246 247 0.616891 ACCTACCATTTGACCGGGAC 59.383 55.000 6.32 0.00 0.00 4.46
247 248 0.906775 GACCTACCATTTGACCGGGA 59.093 55.000 6.32 0.00 0.00 5.14
248 249 0.909623 AGACCTACCATTTGACCGGG 59.090 55.000 6.32 0.00 0.00 5.73
249 250 2.356135 CAAGACCTACCATTTGACCGG 58.644 52.381 0.00 0.00 0.00 5.28
250 251 2.356135 CCAAGACCTACCATTTGACCG 58.644 52.381 0.00 0.00 0.00 4.79
261 262 2.662596 CCAGCACGCCAAGACCTA 59.337 61.111 0.00 0.00 0.00 3.08
314 316 8.278639 ACATCCTGATTATAAACATGTGGGTAA 58.721 33.333 0.00 0.00 0.00 2.85
315 317 7.719193 CACATCCTGATTATAAACATGTGGGTA 59.281 37.037 15.13 0.00 34.84 3.69
316 318 6.547141 CACATCCTGATTATAAACATGTGGGT 59.453 38.462 15.13 1.40 34.84 4.51
319 321 7.136772 CAGCACATCCTGATTATAAACATGTG 58.863 38.462 17.20 17.20 39.62 3.21
372 374 2.109181 GTGCCTATCCTCGTGGCC 59.891 66.667 0.00 0.00 45.56 5.36
375 377 1.299468 GCTCGTGCCTATCCTCGTG 60.299 63.158 0.00 0.00 0.00 4.35
376 378 2.835705 CGCTCGTGCCTATCCTCGT 61.836 63.158 3.52 0.00 35.36 4.18
377 379 2.050895 CGCTCGTGCCTATCCTCG 60.051 66.667 3.52 0.00 35.36 4.63
445 447 1.474330 GACTGTTTGGGGGCCTAATG 58.526 55.000 0.84 0.00 0.00 1.90
511 513 1.002502 CCCCAGAAGGAAACGGGAC 60.003 63.158 0.00 0.00 41.62 4.46
512 514 1.462627 ACCCCAGAAGGAAACGGGA 60.463 57.895 0.00 0.00 41.62 5.14
513 515 1.002502 GACCCCAGAAGGAAACGGG 60.003 63.158 0.00 0.00 38.24 5.28
514 516 0.036294 GAGACCCCAGAAGGAAACGG 60.036 60.000 0.00 0.00 38.24 4.44
527 529 2.716017 CGCTCCCTGACTGAGACCC 61.716 68.421 0.00 0.00 31.26 4.46
529 531 2.183046 GCGCTCCCTGACTGAGAC 59.817 66.667 0.00 0.00 31.26 3.36
530 532 3.443925 CGCGCTCCCTGACTGAGA 61.444 66.667 5.56 0.00 31.26 3.27
531 533 4.504916 CCGCGCTCCCTGACTGAG 62.505 72.222 5.56 0.00 0.00 3.35
722 745 4.162690 AATCTGCCGGCGGAGGAC 62.163 66.667 38.79 12.81 34.49 3.85
741 764 1.132500 GGGAAGAGGTTCGGATGGAT 58.868 55.000 0.00 0.00 32.92 3.41
960 997 2.038557 TGTGAGAGTTTAGGGCCTGTTC 59.961 50.000 18.53 8.25 0.00 3.18
1335 1372 0.918258 TCTTGGCATGCCATAGGTGA 59.082 50.000 38.78 25.87 46.64 4.02
1371 1408 1.227734 CAAGACGAAACCCCACCGT 60.228 57.895 0.00 0.00 39.41 4.83
1404 1441 0.895559 CTTTTGGCACTCACCTCCCC 60.896 60.000 0.00 0.00 0.00 4.81
1474 1511 4.795970 AACACTTCAGCGTAGAAAACTG 57.204 40.909 0.00 0.00 0.00 3.16
1488 1525 7.060633 CACGCTGACCAAATAAATTAACACTTC 59.939 37.037 0.00 0.00 0.00 3.01
1558 1596 5.821470 AGCTACAGTGGAATGATGAGAATTG 59.179 40.000 0.00 0.00 0.00 2.32
1559 1597 5.999044 AGCTACAGTGGAATGATGAGAATT 58.001 37.500 0.00 0.00 0.00 2.17
1560 1598 5.627182 AGCTACAGTGGAATGATGAGAAT 57.373 39.130 0.00 0.00 0.00 2.40
1561 1599 5.181009 CAAGCTACAGTGGAATGATGAGAA 58.819 41.667 0.00 0.00 0.00 2.87
1562 1600 4.763073 CAAGCTACAGTGGAATGATGAGA 58.237 43.478 0.00 0.00 0.00 3.27
1563 1601 3.311871 GCAAGCTACAGTGGAATGATGAG 59.688 47.826 0.00 0.00 0.00 2.90
1564 1602 3.054875 AGCAAGCTACAGTGGAATGATGA 60.055 43.478 0.00 0.00 0.00 2.92
1565 1603 3.276857 AGCAAGCTACAGTGGAATGATG 58.723 45.455 0.00 0.00 0.00 3.07
1566 1604 3.641434 AGCAAGCTACAGTGGAATGAT 57.359 42.857 0.00 0.00 0.00 2.45
1567 1605 3.008375 AGAAGCAAGCTACAGTGGAATGA 59.992 43.478 0.00 0.00 0.00 2.57
1568 1606 3.341823 AGAAGCAAGCTACAGTGGAATG 58.658 45.455 0.00 0.00 0.00 2.67
1569 1607 3.008375 TGAGAAGCAAGCTACAGTGGAAT 59.992 43.478 0.00 0.00 0.00 3.01
1570 1608 2.368548 TGAGAAGCAAGCTACAGTGGAA 59.631 45.455 0.00 0.00 0.00 3.53
1571 1609 1.970640 TGAGAAGCAAGCTACAGTGGA 59.029 47.619 0.00 0.00 0.00 4.02
1572 1610 2.289320 ACTGAGAAGCAAGCTACAGTGG 60.289 50.000 20.15 4.78 35.52 4.00
1573 1611 3.037431 ACTGAGAAGCAAGCTACAGTG 57.963 47.619 20.15 0.00 35.52 3.66
1574 1612 3.760580 AACTGAGAAGCAAGCTACAGT 57.239 42.857 17.27 17.27 36.99 3.55
1575 1613 3.122613 CGAAACTGAGAAGCAAGCTACAG 59.877 47.826 16.37 16.37 0.00 2.74
1576 1614 3.059884 CGAAACTGAGAAGCAAGCTACA 58.940 45.455 0.00 0.00 0.00 2.74
1577 1615 3.318017 TCGAAACTGAGAAGCAAGCTAC 58.682 45.455 0.00 0.00 0.00 3.58
1578 1616 3.660501 TCGAAACTGAGAAGCAAGCTA 57.339 42.857 0.00 0.00 0.00 3.32
1579 1617 2.533266 TCGAAACTGAGAAGCAAGCT 57.467 45.000 0.00 0.00 0.00 3.74
1580 1618 2.095053 GGATCGAAACTGAGAAGCAAGC 59.905 50.000 0.00 0.00 0.00 4.01
1581 1619 3.594134 AGGATCGAAACTGAGAAGCAAG 58.406 45.455 0.00 0.00 0.00 4.01
1582 1620 3.685139 AGGATCGAAACTGAGAAGCAA 57.315 42.857 0.00 0.00 0.00 3.91
1583 1621 3.685139 AAGGATCGAAACTGAGAAGCA 57.315 42.857 0.00 0.00 0.00 3.91
1584 1622 3.748568 ACAAAGGATCGAAACTGAGAAGC 59.251 43.478 0.00 0.00 0.00 3.86
1585 1623 7.602517 ATTACAAAGGATCGAAACTGAGAAG 57.397 36.000 0.00 0.00 0.00 2.85
1586 1624 7.878127 AGAATTACAAAGGATCGAAACTGAGAA 59.122 33.333 0.00 0.00 0.00 2.87
1587 1625 7.386851 AGAATTACAAAGGATCGAAACTGAGA 58.613 34.615 0.00 0.00 0.00 3.27
1588 1626 7.547370 AGAGAATTACAAAGGATCGAAACTGAG 59.453 37.037 0.00 0.00 0.00 3.35
1589 1627 7.386851 AGAGAATTACAAAGGATCGAAACTGA 58.613 34.615 0.00 0.00 0.00 3.41
1590 1628 7.602517 AGAGAATTACAAAGGATCGAAACTG 57.397 36.000 0.00 0.00 0.00 3.16
1591 1629 8.622948 AAAGAGAATTACAAAGGATCGAAACT 57.377 30.769 0.00 0.00 0.00 2.66
1592 1630 9.331106 GAAAAGAGAATTACAAAGGATCGAAAC 57.669 33.333 0.00 0.00 0.00 2.78
1593 1631 9.284968 AGAAAAGAGAATTACAAAGGATCGAAA 57.715 29.630 0.00 0.00 0.00 3.46
1594 1632 8.721478 CAGAAAAGAGAATTACAAAGGATCGAA 58.279 33.333 0.00 0.00 0.00 3.71
1595 1633 8.094548 TCAGAAAAGAGAATTACAAAGGATCGA 58.905 33.333 0.00 0.00 0.00 3.59
1668 1706 0.832626 AGCTTTGCCTTTTGCCACTT 59.167 45.000 0.00 0.00 40.16 3.16
1673 1711 1.328374 CACACAAGCTTTGCCTTTTGC 59.672 47.619 0.00 0.00 41.77 3.68
1738 1776 7.098074 ACACTACTAACTTGTACAGCCTATC 57.902 40.000 0.00 0.00 0.00 2.08
1818 1861 7.576861 TCCACATATACGATCTTAGTGTTCA 57.423 36.000 0.00 0.00 0.00 3.18
1893 1936 3.121030 CCGCTTGAGAACTGCCCG 61.121 66.667 0.00 0.00 0.00 6.13
2153 2196 3.389983 TGTAGGTGCTTTAAGTCAGGTGT 59.610 43.478 0.00 0.00 0.00 4.16
2268 2313 2.095718 GGAAAGACCAATCAAGACGCAC 60.096 50.000 0.00 0.00 38.79 5.34
2309 2354 1.538047 CAACAACATGAGAGTGGGGG 58.462 55.000 0.00 0.00 0.00 5.40
2475 2520 0.110104 AGCCCTTCATCCAGCATAGC 59.890 55.000 0.00 0.00 0.00 2.97
2687 2733 2.717639 AGACCCCAGTATTGACATGC 57.282 50.000 0.00 0.00 0.00 4.06
2933 3001 6.766467 TCAAGATACTCGTACTAAGCAGATGA 59.234 38.462 0.00 0.00 0.00 2.92
2993 3061 3.832527 ACCAACAGCAGATAGGTTTGTT 58.167 40.909 0.00 0.00 32.60 2.83
3144 3412 4.990426 GCAACAGTGAGGCAACATATTTTT 59.010 37.500 0.00 0.00 41.41 1.94
3145 3413 4.559153 GCAACAGTGAGGCAACATATTTT 58.441 39.130 0.00 0.00 41.41 1.82
3146 3414 3.056607 GGCAACAGTGAGGCAACATATTT 60.057 43.478 0.00 0.00 41.41 1.40
3147 3415 2.493278 GGCAACAGTGAGGCAACATATT 59.507 45.455 0.00 0.00 41.41 1.28
3148 3416 2.094675 GGCAACAGTGAGGCAACATAT 58.905 47.619 0.00 0.00 41.41 1.78
3149 3417 1.202867 TGGCAACAGTGAGGCAACATA 60.203 47.619 12.56 0.00 46.17 2.29
3150 3418 0.467844 TGGCAACAGTGAGGCAACAT 60.468 50.000 12.56 0.00 46.17 2.71
3151 3419 1.077140 TGGCAACAGTGAGGCAACA 60.077 52.632 12.56 1.30 46.17 3.33
3152 3420 3.840437 TGGCAACAGTGAGGCAAC 58.160 55.556 12.56 0.00 46.17 4.17
3380 3651 9.817809 TCAATAGCTCTCGTTAGAAAAATGTAT 57.182 29.630 0.00 0.00 0.00 2.29
3444 3715 6.808008 ACACAGAATGATCAGTTGGTTTAG 57.192 37.500 0.09 0.00 39.69 1.85
3464 3735 2.365941 GAGGGCCAGTAGAGGAATACAC 59.634 54.545 6.18 0.00 0.00 2.90
3762 4033 2.935481 CCTCTGCCACTGGGGGAA 60.935 66.667 0.00 0.00 36.08 3.97
3870 4141 0.723981 GCAGGATCGACTGAAGCAAC 59.276 55.000 7.19 0.00 40.97 4.17
4032 4303 8.509690 CAAAGAGAGAACATGAAGCAATAAGAA 58.490 33.333 0.00 0.00 0.00 2.52
4077 4348 4.949856 GGACCACCTGTACATTCATTGAAT 59.050 41.667 6.06 6.06 31.86 2.57
4218 4489 7.855904 GGCAATAACAATTATAAGAACCTCGTG 59.144 37.037 0.00 0.00 0.00 4.35
4268 4539 7.620880 ACAGATGCCATAGAAGTACAAAACTA 58.379 34.615 0.00 0.00 37.50 2.24
4269 4540 6.476378 ACAGATGCCATAGAAGTACAAAACT 58.524 36.000 0.00 0.00 41.49 2.66
4284 4555 5.801531 ATACCGAATAGTAACAGATGCCA 57.198 39.130 0.00 0.00 0.00 4.92
4302 4573 5.358160 ACTGCTCTCCTTAATGCAAAATACC 59.642 40.000 0.00 0.00 34.90 2.73
4328 4599 1.332997 GAGCAATGGAAGCGGAATCAG 59.667 52.381 0.00 0.00 37.01 2.90
4459 4730 5.789643 TTATCAAAAACAGCAGCCTCTTT 57.210 34.783 0.00 0.00 0.00 2.52
4929 5200 8.680903 CAAGCTGTAAGATCTGATAAAAATGGT 58.319 33.333 0.00 0.00 34.07 3.55
5034 5305 9.486497 CGTCTACACCTACTCAATATACTCTTA 57.514 37.037 0.00 0.00 0.00 2.10
5080 5351 6.038161 TGTTATGGCTTGCAGTATATGTGAAC 59.962 38.462 0.00 0.00 0.00 3.18
5093 5364 3.120792 CAGCATGAATGTTATGGCTTGC 58.879 45.455 0.00 0.00 39.69 4.01
5095 5366 2.101917 GGCAGCATGAATGTTATGGCTT 59.898 45.455 0.00 0.00 39.69 4.35
5096 5367 1.684983 GGCAGCATGAATGTTATGGCT 59.315 47.619 0.00 0.00 39.69 4.75
5097 5368 1.269936 GGGCAGCATGAATGTTATGGC 60.270 52.381 0.00 9.03 39.69 4.40
5099 5370 3.635373 AGAAGGGCAGCATGAATGTTATG 59.365 43.478 0.00 0.00 39.69 1.90
5100 5371 3.907221 AGAAGGGCAGCATGAATGTTAT 58.093 40.909 0.00 0.00 39.69 1.89
5142 5579 8.891671 AACGAAACCACACTCTACTAAATAAA 57.108 30.769 0.00 0.00 0.00 1.40
5228 5665 5.502544 CGCTTCCTTCCTATAAAAGAAAGCG 60.503 44.000 19.32 19.32 0.00 4.68
5253 5690 9.342308 TGACTTTTCTTTTACAGATTCACTCAT 57.658 29.630 0.00 0.00 0.00 2.90
5257 5694 8.567948 TGGATGACTTTTCTTTTACAGATTCAC 58.432 33.333 0.00 0.00 0.00 3.18
5267 5704 7.488322 TCACGAAAATGGATGACTTTTCTTTT 58.512 30.769 0.00 0.00 38.58 2.27
5268 5705 7.038154 TCACGAAAATGGATGACTTTTCTTT 57.962 32.000 0.00 0.00 38.58 2.52
5295 5732 4.202556 CCTCATCCTCCTCTGATCTGTAGA 60.203 50.000 0.00 0.00 0.00 2.59
5296 5733 4.081406 CCTCATCCTCCTCTGATCTGTAG 58.919 52.174 0.00 0.00 0.00 2.74
5408 5845 0.383231 GGCCATCTCAATGCTTTCCG 59.617 55.000 0.00 0.00 0.00 4.30
5453 5890 4.760204 AGCAAGTGTTAACCTTCCATGTAC 59.240 41.667 2.48 0.00 0.00 2.90
5518 5955 3.138884 TGCAGGCTGAGTGTTCATTAA 57.861 42.857 20.86 0.00 31.68 1.40
5706 6143 2.023673 CTCCAGAACAACTGTGGCAAA 58.976 47.619 0.00 0.00 44.40 3.68
5898 6342 4.862371 AGACACACCTCAAACCCTAAAAA 58.138 39.130 0.00 0.00 0.00 1.94
5902 6346 2.775384 ACAAGACACACCTCAAACCCTA 59.225 45.455 0.00 0.00 0.00 3.53
6001 6451 0.107214 ATAACATGTGGGCCCAGACG 60.107 55.000 29.55 21.54 0.00 4.18
6076 6526 8.934507 AGACAAATATTTAAGAACGGAGAGAG 57.065 34.615 0.00 0.00 0.00 3.20
6077 6527 9.720769 AAAGACAAATATTTAAGAACGGAGAGA 57.279 29.630 0.00 0.00 0.00 3.10
6078 6528 9.974750 GAAAGACAAATATTTAAGAACGGAGAG 57.025 33.333 0.00 0.00 0.00 3.20
6079 6529 9.720769 AGAAAGACAAATATTTAAGAACGGAGA 57.279 29.630 0.00 0.00 0.00 3.71
6113 6563 9.570468 AGTCATCCGTATCTAGTAGTCATTTAA 57.430 33.333 0.00 0.00 0.00 1.52
6115 6565 9.001542 GTAGTCATCCGTATCTAGTAGTCATTT 57.998 37.037 0.00 0.00 0.00 2.32
6116 6566 8.377034 AGTAGTCATCCGTATCTAGTAGTCATT 58.623 37.037 0.00 0.00 0.00 2.57
6117 6567 7.909518 AGTAGTCATCCGTATCTAGTAGTCAT 58.090 38.462 0.00 0.00 0.00 3.06
6118 6568 7.300556 AGTAGTCATCCGTATCTAGTAGTCA 57.699 40.000 0.00 0.00 0.00 3.41
6119 6569 8.739039 TCTAGTAGTCATCCGTATCTAGTAGTC 58.261 40.741 0.00 0.00 37.53 2.59
6120 6570 8.648698 TCTAGTAGTCATCCGTATCTAGTAGT 57.351 38.462 0.00 0.00 37.53 2.73
6123 6573 8.190122 CGTATCTAGTAGTCATCCGTATCTAGT 58.810 40.741 0.00 0.00 0.00 2.57
6124 6574 7.648908 CCGTATCTAGTAGTCATCCGTATCTAG 59.351 44.444 0.00 0.00 0.00 2.43
6125 6575 7.340487 TCCGTATCTAGTAGTCATCCGTATCTA 59.660 40.741 0.00 0.00 0.00 1.98
6126 6576 6.154192 TCCGTATCTAGTAGTCATCCGTATCT 59.846 42.308 0.00 0.00 0.00 1.98
6127 6577 6.336566 TCCGTATCTAGTAGTCATCCGTATC 58.663 44.000 0.00 0.00 0.00 2.24
6128 6578 6.291648 TCCGTATCTAGTAGTCATCCGTAT 57.708 41.667 0.00 0.00 0.00 3.06
6129 6579 5.728637 TCCGTATCTAGTAGTCATCCGTA 57.271 43.478 0.00 0.00 0.00 4.02
6130 6580 4.613925 TCCGTATCTAGTAGTCATCCGT 57.386 45.455 0.00 0.00 0.00 4.69
6131 6581 4.936411 ACATCCGTATCTAGTAGTCATCCG 59.064 45.833 0.00 0.00 0.00 4.18
6132 6582 7.553402 ACATACATCCGTATCTAGTAGTCATCC 59.447 40.741 0.00 0.00 36.11 3.51
6133 6583 8.495361 ACATACATCCGTATCTAGTAGTCATC 57.505 38.462 0.00 0.00 36.11 2.92
6134 6584 9.602568 CTACATACATCCGTATCTAGTAGTCAT 57.397 37.037 0.00 0.00 36.11 3.06
6135 6585 8.810041 TCTACATACATCCGTATCTAGTAGTCA 58.190 37.037 0.00 0.00 36.11 3.41
6136 6586 9.086336 GTCTACATACATCCGTATCTAGTAGTC 57.914 40.741 0.00 0.00 36.11 2.59
6137 6587 8.591940 TGTCTACATACATCCGTATCTAGTAGT 58.408 37.037 0.00 0.00 36.11 2.73
6138 6588 8.999220 TGTCTACATACATCCGTATCTAGTAG 57.001 38.462 0.00 0.00 36.11 2.57
6173 6623 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
6174 6624 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
6175 6625 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
6176 6626 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
6177 6627 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
6178 6628 4.492570 CGTACGGAGCAAAATGAGTGAATC 60.493 45.833 7.57 0.00 0.00 2.52
6179 6629 3.370978 CGTACGGAGCAAAATGAGTGAAT 59.629 43.478 7.57 0.00 0.00 2.57
6180 6630 2.734606 CGTACGGAGCAAAATGAGTGAA 59.265 45.455 7.57 0.00 0.00 3.18
6181 6631 2.288579 ACGTACGGAGCAAAATGAGTGA 60.289 45.455 21.06 0.00 0.00 3.41
6182 6632 2.066262 ACGTACGGAGCAAAATGAGTG 58.934 47.619 21.06 0.00 0.00 3.51
6183 6633 2.450609 ACGTACGGAGCAAAATGAGT 57.549 45.000 21.06 0.00 0.00 3.41
6184 6634 3.508762 ACTACGTACGGAGCAAAATGAG 58.491 45.455 27.33 1.42 0.00 2.90
6185 6635 3.057386 TGACTACGTACGGAGCAAAATGA 60.057 43.478 27.33 0.00 0.00 2.57
6186 6636 3.247442 TGACTACGTACGGAGCAAAATG 58.753 45.455 27.33 3.03 0.00 2.32
6187 6637 3.581024 TGACTACGTACGGAGCAAAAT 57.419 42.857 27.33 7.40 0.00 1.82
6188 6638 3.581024 ATGACTACGTACGGAGCAAAA 57.419 42.857 27.33 10.70 0.00 2.44
6189 6639 3.581024 AATGACTACGTACGGAGCAAA 57.419 42.857 27.33 13.28 0.00 3.68
6190 6640 3.247442 CAAATGACTACGTACGGAGCAA 58.753 45.455 27.33 15.92 0.00 3.91
6191 6641 2.229543 ACAAATGACTACGTACGGAGCA 59.770 45.455 27.33 23.90 0.00 4.26
6192 6642 2.872370 ACAAATGACTACGTACGGAGC 58.128 47.619 27.33 19.29 0.00 4.70
6193 6643 6.932901 TTTAACAAATGACTACGTACGGAG 57.067 37.500 25.90 25.90 0.00 4.63
6194 6644 7.887996 ATTTTAACAAATGACTACGTACGGA 57.112 32.000 21.06 10.81 30.89 4.69
6223 6673 9.524106 CCTCCGTTTTTAAATACTTGTTTTTCT 57.476 29.630 7.12 0.00 0.00 2.52
6224 6674 8.757789 CCCTCCGTTTTTAAATACTTGTTTTTC 58.242 33.333 7.12 0.00 0.00 2.29
6225 6675 8.476447 TCCCTCCGTTTTTAAATACTTGTTTTT 58.524 29.630 7.12 0.00 0.00 1.94
6226 6676 8.009622 TCCCTCCGTTTTTAAATACTTGTTTT 57.990 30.769 7.12 0.00 0.00 2.43
6227 6677 7.286087 ACTCCCTCCGTTTTTAAATACTTGTTT 59.714 33.333 7.12 0.00 0.00 2.83
6228 6678 6.774170 ACTCCCTCCGTTTTTAAATACTTGTT 59.226 34.615 7.12 0.00 0.00 2.83
6229 6679 6.301486 ACTCCCTCCGTTTTTAAATACTTGT 58.699 36.000 7.12 0.00 0.00 3.16
6230 6680 6.812879 ACTCCCTCCGTTTTTAAATACTTG 57.187 37.500 7.12 0.00 0.00 3.16
6231 6681 9.524496 AAATACTCCCTCCGTTTTTAAATACTT 57.476 29.630 7.12 0.00 0.00 2.24
6232 6682 9.524496 AAAATACTCCCTCCGTTTTTAAATACT 57.476 29.630 7.12 0.00 0.00 2.12
6233 6683 9.563898 CAAAATACTCCCTCCGTTTTTAAATAC 57.436 33.333 0.00 0.00 0.00 1.89
6234 6684 8.741841 CCAAAATACTCCCTCCGTTTTTAAATA 58.258 33.333 0.00 0.00 0.00 1.40
6235 6685 7.452189 TCCAAAATACTCCCTCCGTTTTTAAAT 59.548 33.333 0.00 0.00 0.00 1.40
6236 6686 6.776603 TCCAAAATACTCCCTCCGTTTTTAAA 59.223 34.615 0.00 0.00 0.00 1.52
6237 6687 6.305411 TCCAAAATACTCCCTCCGTTTTTAA 58.695 36.000 0.00 0.00 0.00 1.52
6238 6688 5.878627 TCCAAAATACTCCCTCCGTTTTTA 58.121 37.500 0.00 0.00 0.00 1.52
6239 6689 4.732065 TCCAAAATACTCCCTCCGTTTTT 58.268 39.130 0.00 0.00 0.00 1.94
6240 6690 4.376225 TCCAAAATACTCCCTCCGTTTT 57.624 40.909 0.00 0.00 0.00 2.43
6241 6691 4.376225 TTCCAAAATACTCCCTCCGTTT 57.624 40.909 0.00 0.00 0.00 3.60
6242 6692 4.376225 TTTCCAAAATACTCCCTCCGTT 57.624 40.909 0.00 0.00 0.00 4.44
6243 6693 4.376225 TTTTCCAAAATACTCCCTCCGT 57.624 40.909 0.00 0.00 0.00 4.69
6244 6694 5.008712 GCTATTTTCCAAAATACTCCCTCCG 59.991 44.000 1.10 0.00 39.24 4.63
6245 6695 5.891551 TGCTATTTTCCAAAATACTCCCTCC 59.108 40.000 1.10 0.00 39.24 4.30
6246 6696 6.377146 TGTGCTATTTTCCAAAATACTCCCTC 59.623 38.462 1.10 0.00 39.24 4.30
6247 6697 6.252995 TGTGCTATTTTCCAAAATACTCCCT 58.747 36.000 1.10 0.00 39.24 4.20
6248 6698 6.524101 TGTGCTATTTTCCAAAATACTCCC 57.476 37.500 1.10 0.00 39.24 4.30
6249 6699 8.034804 ACAATGTGCTATTTTCCAAAATACTCC 58.965 33.333 1.10 0.00 39.24 3.85
6250 6700 8.986477 ACAATGTGCTATTTTCCAAAATACTC 57.014 30.769 1.10 0.00 39.24 2.59
6251 6701 9.423061 GAACAATGTGCTATTTTCCAAAATACT 57.577 29.630 1.10 0.00 39.24 2.12
6252 6702 9.423061 AGAACAATGTGCTATTTTCCAAAATAC 57.577 29.630 0.00 0.00 39.24 1.89
6253 6703 9.638239 GAGAACAATGTGCTATTTTCCAAAATA 57.362 29.630 0.00 4.76 39.24 1.40
6254 6704 7.603784 GGAGAACAATGTGCTATTTTCCAAAAT 59.396 33.333 0.00 2.92 41.24 1.82
6258 6708 5.324409 AGGAGAACAATGTGCTATTTTCCA 58.676 37.500 0.00 0.00 0.00 3.53
6265 6715 7.004555 TCTTTTCTAGGAGAACAATGTGCTA 57.995 36.000 0.00 0.00 33.26 3.49
6397 6847 5.269991 ACAGTAGCCACTAATCTCCAACTA 58.730 41.667 0.00 0.00 32.21 2.24
6500 6950 1.273048 TGTGGCAGTGGAATGAAATGC 59.727 47.619 0.00 0.00 36.16 3.56
6514 6964 2.191908 GACAGTGGTGGTGTGGCA 59.808 61.111 0.00 0.00 0.00 4.92
6533 6983 0.379669 GGCTCTCATGGCAATCAACG 59.620 55.000 0.00 0.00 0.00 4.10
6583 7033 4.643387 GCTGGTGGAGGCAACCGT 62.643 66.667 0.00 0.00 40.86 4.83
6632 7082 4.916041 TCAGATTTCTTCACTCCACCAT 57.084 40.909 0.00 0.00 0.00 3.55
6666 7116 2.917227 TCAGCGCTGGTGGAGACA 60.917 61.111 35.36 12.43 38.70 3.41
6673 7123 1.166531 GGTTTTGTCTCAGCGCTGGT 61.167 55.000 35.36 0.00 0.00 4.00
6678 7128 1.291877 CCTCGGGTTTTGTCTCAGCG 61.292 60.000 0.00 0.00 0.00 5.18
6681 7131 1.072505 GGCCTCGGGTTTTGTCTCA 59.927 57.895 0.00 0.00 0.00 3.27
6687 7137 2.346365 GAGTCGGCCTCGGGTTTT 59.654 61.111 0.00 0.00 36.95 2.43
6735 7185 4.749310 CTGGCTGCGACGGCTTCT 62.749 66.667 9.89 0.00 40.82 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.