Multiple sequence alignment - TraesCS4A01G170900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G170900 chr4A 100.000 4743 0 0 1 4743 430869972 430865230 0.000000e+00 8759.0
1 TraesCS4A01G170900 chr4A 91.246 297 19 4 695 990 532067915 532067625 9.560000e-107 398.0
2 TraesCS4A01G170900 chr4A 82.517 143 21 4 446 586 11071825 11071965 6.450000e-24 122.0
3 TraesCS4A01G170900 chr4A 85.455 110 13 1 1483 1589 43233699 43233590 1.400000e-20 111.0
4 TraesCS4A01G170900 chr4D 94.641 3359 135 11 1413 4743 132132162 132135503 0.000000e+00 5164.0
5 TraesCS4A01G170900 chr4D 87.576 330 12 6 1 329 132129604 132129905 5.840000e-94 355.0
6 TraesCS4A01G170900 chr4D 86.760 287 23 3 1041 1322 132131342 132131618 5.960000e-79 305.0
7 TraesCS4A01G170900 chr4D 86.486 111 12 1 1483 1590 420942214 420942324 8.340000e-23 119.0
8 TraesCS4A01G170900 chr4D 97.222 36 1 0 334 369 132129924 132129959 1.430000e-05 62.1
9 TraesCS4A01G170900 chr4B 96.669 2432 71 4 1413 3835 166001685 165999255 0.000000e+00 4034.0
10 TraesCS4A01G170900 chr4B 87.927 936 88 8 3827 4743 165998837 165997908 0.000000e+00 1079.0
11 TraesCS4A01G170900 chr4B 89.378 386 25 4 3 375 166003004 166002622 5.560000e-129 472.0
12 TraesCS4A01G170900 chr4B 88.028 284 23 2 1041 1323 166002507 166002234 4.580000e-85 326.0
13 TraesCS4A01G170900 chr4B 91.765 85 6 1 1506 1590 518097529 518097612 3.000000e-22 117.0
14 TraesCS4A01G170900 chr6A 91.275 298 18 5 695 990 19523565 19523274 2.660000e-107 399.0
15 TraesCS4A01G170900 chr6A 83.645 214 27 7 374 584 595172834 595173042 1.350000e-45 195.0
16 TraesCS4A01G170900 chr6B 90.759 303 21 4 689 990 547713648 547713944 9.560000e-107 398.0
17 TraesCS4A01G170900 chr5A 90.759 303 21 2 689 990 148832425 148832721 9.560000e-107 398.0
18 TraesCS4A01G170900 chr3A 91.246 297 19 4 695 990 102529211 102529501 9.560000e-107 398.0
19 TraesCS4A01G170900 chr3A 91.246 297 19 4 695 990 363315983 363316273 9.560000e-107 398.0
20 TraesCS4A01G170900 chr3A 91.246 297 19 4 695 990 668824046 668823756 9.560000e-107 398.0
21 TraesCS4A01G170900 chr2A 91.000 300 20 4 692 990 602441070 602441363 9.560000e-107 398.0
22 TraesCS4A01G170900 chr2A 90.728 302 21 4 690 990 18596996 18596701 3.440000e-106 396.0
23 TraesCS4A01G170900 chr2A 77.918 317 55 12 1449 1762 745014869 745015173 2.920000e-42 183.0
24 TraesCS4A01G170900 chr7D 82.051 234 35 6 375 605 614376142 614375913 4.840000e-45 193.0
25 TraesCS4A01G170900 chrUn 86.452 155 19 2 445 597 86353214 86353060 8.160000e-38 169.0
26 TraesCS4A01G170900 chr2D 78.169 284 44 12 1453 1731 613344472 613344742 1.060000e-36 165.0
27 TraesCS4A01G170900 chr2B 78.246 285 43 15 1452 1731 748723201 748723471 1.060000e-36 165.0
28 TraesCS4A01G170900 chr3D 80.288 208 27 10 375 577 33906876 33906678 1.380000e-30 145.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G170900 chr4A 430865230 430869972 4742 True 8759.000 8759 100.00000 1 4743 1 chr4A.!!$R2 4742
1 TraesCS4A01G170900 chr4D 132129604 132135503 5899 False 1471.525 5164 91.54975 1 4743 4 chr4D.!!$F2 4742
2 TraesCS4A01G170900 chr4B 165997908 166003004 5096 True 1477.750 4034 90.50050 3 4743 4 chr4B.!!$R1 4740

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
331 350 0.242017 ATCTGCTTTTCGCACAAGGC 59.758 50.000 0.00 0.0 45.47 4.35 F
1006 2305 0.038526 ACCCGTCTAACGAGTTGCTG 60.039 55.000 0.24 0.0 46.05 4.41 F
1853 3634 0.105593 CCAGCGTCATGTGCTCCTAT 59.894 55.000 11.42 0.0 41.72 2.57 F
1946 3727 0.545171 TCGAGGGGTACATCGTCTCT 59.455 55.000 12.28 0.0 39.86 3.10 F
3569 5359 1.906574 AGTGGCTAAGGATTCGGACAA 59.093 47.619 0.00 0.0 0.00 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2138 3919 1.300156 GAGGCGCATCTGCACGATA 60.300 57.895 16.00 0.0 42.21 2.92 R
2546 4327 1.066587 GACCTTCTGATCGAGGCCG 59.933 63.158 0.00 0.0 37.07 6.13 R
3366 5156 0.179094 AACGTGCACCTTCTCGAACA 60.179 50.000 12.15 0.0 0.00 3.18 R
3630 5420 0.532862 CACCTTTGCGGAGACAGTGT 60.533 55.000 0.00 0.0 36.31 3.55 R
4572 6803 1.018148 CTGCACCGTCGATCTAGACT 58.982 55.000 0.00 0.0 38.90 3.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 30 1.852965 AGATAGGAATGGGTTGGTGGG 59.147 52.381 0.00 0.00 0.00 4.61
25 31 1.569072 GATAGGAATGGGTTGGTGGGT 59.431 52.381 0.00 0.00 0.00 4.51
26 32 0.701731 TAGGAATGGGTTGGTGGGTG 59.298 55.000 0.00 0.00 0.00 4.61
27 33 1.609210 GGAATGGGTTGGTGGGTGG 60.609 63.158 0.00 0.00 0.00 4.61
28 34 1.462928 GAATGGGTTGGTGGGTGGA 59.537 57.895 0.00 0.00 0.00 4.02
104 110 1.222936 GCCACCCAGATCAGGACTG 59.777 63.158 5.57 0.54 35.43 3.51
105 111 1.222936 CCACCCAGATCAGGACTGC 59.777 63.158 5.57 0.00 34.47 4.40
106 112 1.270414 CCACCCAGATCAGGACTGCT 61.270 60.000 5.57 0.00 34.47 4.24
107 113 1.489481 CACCCAGATCAGGACTGCTA 58.511 55.000 5.57 0.00 34.47 3.49
108 114 2.045524 CACCCAGATCAGGACTGCTAT 58.954 52.381 5.57 0.00 34.47 2.97
109 115 2.045524 ACCCAGATCAGGACTGCTATG 58.954 52.381 5.57 0.00 34.47 2.23
110 116 2.045524 CCCAGATCAGGACTGCTATGT 58.954 52.381 5.57 0.00 34.47 2.29
111 117 2.036992 CCCAGATCAGGACTGCTATGTC 59.963 54.545 5.57 0.00 34.47 3.06
112 118 2.964464 CCAGATCAGGACTGCTATGTCT 59.036 50.000 0.00 0.00 37.16 3.41
113 119 3.005684 CCAGATCAGGACTGCTATGTCTC 59.994 52.174 0.00 0.00 37.16 3.36
114 120 3.890756 CAGATCAGGACTGCTATGTCTCT 59.109 47.826 0.00 0.00 37.16 3.10
115 121 5.069318 CAGATCAGGACTGCTATGTCTCTA 58.931 45.833 0.00 0.00 37.16 2.43
116 122 5.181811 CAGATCAGGACTGCTATGTCTCTAG 59.818 48.000 0.00 0.00 37.16 2.43
130 148 6.741992 ATGTCTCTAGCTAATCAGATCTCG 57.258 41.667 0.00 0.00 0.00 4.04
148 166 2.422127 CTCGGCGTGTAATTTGGGAAAT 59.578 45.455 6.85 0.00 0.00 2.17
198 216 6.442513 AATAGCCTAATCACTGTTGCTTTC 57.557 37.500 0.00 0.00 0.00 2.62
204 222 6.089954 GCCTAATCACTGTTGCTTTCAAAATC 59.910 38.462 0.00 0.00 33.37 2.17
212 230 7.752239 CACTGTTGCTTTCAAAATCGATCTAAT 59.248 33.333 0.00 0.00 33.37 1.73
213 231 8.946085 ACTGTTGCTTTCAAAATCGATCTAATA 58.054 29.630 0.00 0.00 33.37 0.98
214 232 9.214953 CTGTTGCTTTCAAAATCGATCTAATAC 57.785 33.333 0.00 0.00 33.37 1.89
223 241 3.695005 TCGATCTAATACTACGCGACG 57.305 47.619 15.93 5.32 0.00 5.12
239 257 1.340248 CGACGGTGCTAATATCTGGGT 59.660 52.381 0.00 0.00 0.00 4.51
241 259 3.391049 GACGGTGCTAATATCTGGGTTC 58.609 50.000 0.00 0.00 0.00 3.62
242 260 2.223971 ACGGTGCTAATATCTGGGTTCG 60.224 50.000 0.00 0.00 0.00 3.95
243 261 2.223971 CGGTGCTAATATCTGGGTTCGT 60.224 50.000 0.00 0.00 0.00 3.85
329 348 2.476854 GCCTATCTGCTTTTCGCACAAG 60.477 50.000 0.00 0.00 45.47 3.16
331 350 0.242017 ATCTGCTTTTCGCACAAGGC 59.758 50.000 0.00 0.00 45.47 4.35
362 395 6.089417 GCCTTCAATCGTTTTTAAGACAATGG 59.911 38.462 0.00 0.00 0.00 3.16
372 405 8.531530 CGTTTTTAAGACAATGGAGACTTTTTG 58.468 33.333 0.00 0.00 0.00 2.44
375 408 8.458573 TTTAAGACAATGGAGACTTTTTGCTA 57.541 30.769 0.00 0.00 0.00 3.49
376 409 5.948992 AGACAATGGAGACTTTTTGCTAC 57.051 39.130 0.00 0.00 0.00 3.58
377 410 5.625150 AGACAATGGAGACTTTTTGCTACT 58.375 37.500 0.00 0.00 0.00 2.57
378 411 6.769512 AGACAATGGAGACTTTTTGCTACTA 58.230 36.000 0.00 0.00 0.00 1.82
379 412 7.398024 AGACAATGGAGACTTTTTGCTACTAT 58.602 34.615 0.00 0.00 0.00 2.12
380 413 7.550906 AGACAATGGAGACTTTTTGCTACTATC 59.449 37.037 0.00 0.00 0.00 2.08
381 414 7.398024 ACAATGGAGACTTTTTGCTACTATCT 58.602 34.615 0.00 0.00 0.00 1.98
382 415 7.885399 ACAATGGAGACTTTTTGCTACTATCTT 59.115 33.333 0.00 0.00 0.00 2.40
383 416 8.394121 CAATGGAGACTTTTTGCTACTATCTTC 58.606 37.037 0.00 0.00 0.00 2.87
384 417 6.100004 TGGAGACTTTTTGCTACTATCTTCG 58.900 40.000 0.00 0.00 0.00 3.79
385 418 6.100668 GGAGACTTTTTGCTACTATCTTCGT 58.899 40.000 0.00 0.00 0.00 3.85
386 419 6.253942 GGAGACTTTTTGCTACTATCTTCGTC 59.746 42.308 0.00 0.00 0.00 4.20
387 420 6.926313 AGACTTTTTGCTACTATCTTCGTCT 58.074 36.000 0.00 0.00 0.00 4.18
388 421 6.809196 AGACTTTTTGCTACTATCTTCGTCTG 59.191 38.462 0.00 0.00 0.00 3.51
389 422 5.869888 ACTTTTTGCTACTATCTTCGTCTGG 59.130 40.000 0.00 0.00 0.00 3.86
390 423 5.654603 TTTTGCTACTATCTTCGTCTGGA 57.345 39.130 0.00 0.00 0.00 3.86
391 424 5.854010 TTTGCTACTATCTTCGTCTGGAT 57.146 39.130 0.00 0.00 0.00 3.41
392 425 5.854010 TTGCTACTATCTTCGTCTGGATT 57.146 39.130 0.00 0.00 0.00 3.01
393 426 5.854010 TGCTACTATCTTCGTCTGGATTT 57.146 39.130 0.00 0.00 0.00 2.17
394 427 6.954487 TGCTACTATCTTCGTCTGGATTTA 57.046 37.500 0.00 0.00 0.00 1.40
395 428 7.526142 TGCTACTATCTTCGTCTGGATTTAT 57.474 36.000 0.00 0.00 0.00 1.40
396 429 7.952671 TGCTACTATCTTCGTCTGGATTTATT 58.047 34.615 0.00 0.00 0.00 1.40
397 430 9.074576 TGCTACTATCTTCGTCTGGATTTATTA 57.925 33.333 0.00 0.00 0.00 0.98
398 431 9.562583 GCTACTATCTTCGTCTGGATTTATTAG 57.437 37.037 0.00 0.00 0.00 1.73
400 433 7.379750 ACTATCTTCGTCTGGATTTATTAGGC 58.620 38.462 0.00 0.00 0.00 3.93
401 434 4.957296 TCTTCGTCTGGATTTATTAGGCC 58.043 43.478 0.00 0.00 0.00 5.19
402 435 3.764237 TCGTCTGGATTTATTAGGCCC 57.236 47.619 0.00 0.00 0.00 5.80
403 436 3.314693 TCGTCTGGATTTATTAGGCCCT 58.685 45.455 0.00 0.00 0.00 5.19
404 437 3.323979 TCGTCTGGATTTATTAGGCCCTC 59.676 47.826 0.00 0.00 0.00 4.30
405 438 3.325135 CGTCTGGATTTATTAGGCCCTCT 59.675 47.826 0.00 0.00 0.00 3.69
406 439 4.202367 CGTCTGGATTTATTAGGCCCTCTT 60.202 45.833 0.00 0.00 0.00 2.85
407 440 5.066593 GTCTGGATTTATTAGGCCCTCTTG 58.933 45.833 0.00 0.00 0.00 3.02
408 441 4.726825 TCTGGATTTATTAGGCCCTCTTGT 59.273 41.667 0.00 0.00 0.00 3.16
409 442 5.908831 TCTGGATTTATTAGGCCCTCTTGTA 59.091 40.000 0.00 0.00 0.00 2.41
410 443 5.937111 TGGATTTATTAGGCCCTCTTGTAC 58.063 41.667 0.00 0.00 0.00 2.90
411 444 5.670361 TGGATTTATTAGGCCCTCTTGTACT 59.330 40.000 0.00 0.00 0.00 2.73
412 445 6.159751 TGGATTTATTAGGCCCTCTTGTACTT 59.840 38.462 0.00 0.00 0.00 2.24
413 446 7.061054 GGATTTATTAGGCCCTCTTGTACTTT 58.939 38.462 0.00 0.00 0.00 2.66
414 447 8.215736 GGATTTATTAGGCCCTCTTGTACTTTA 58.784 37.037 0.00 0.00 0.00 1.85
415 448 9.274206 GATTTATTAGGCCCTCTTGTACTTTAG 57.726 37.037 0.00 0.00 0.00 1.85
416 449 7.983166 TTATTAGGCCCTCTTGTACTTTAGA 57.017 36.000 0.00 0.00 0.00 2.10
417 450 8.562949 TTATTAGGCCCTCTTGTACTTTAGAT 57.437 34.615 0.00 0.00 0.00 1.98
418 451 6.481434 TTAGGCCCTCTTGTACTTTAGATC 57.519 41.667 0.00 0.00 0.00 2.75
419 452 3.712218 AGGCCCTCTTGTACTTTAGATCC 59.288 47.826 0.00 0.00 0.00 3.36
420 453 3.454812 GGCCCTCTTGTACTTTAGATCCA 59.545 47.826 0.00 0.00 0.00 3.41
421 454 4.080526 GGCCCTCTTGTACTTTAGATCCAA 60.081 45.833 0.00 0.00 0.00 3.53
422 455 5.497474 GCCCTCTTGTACTTTAGATCCAAA 58.503 41.667 0.00 0.00 0.00 3.28
423 456 6.122964 GCCCTCTTGTACTTTAGATCCAAAT 58.877 40.000 0.00 0.00 0.00 2.32
424 457 6.603599 GCCCTCTTGTACTTTAGATCCAAATT 59.396 38.462 0.00 0.00 0.00 1.82
425 458 7.122799 GCCCTCTTGTACTTTAGATCCAAATTT 59.877 37.037 0.00 0.00 0.00 1.82
426 459 8.462016 CCCTCTTGTACTTTAGATCCAAATTTG 58.538 37.037 11.40 11.40 0.00 2.32
427 460 9.231297 CCTCTTGTACTTTAGATCCAAATTTGA 57.769 33.333 19.86 6.29 0.00 2.69
438 471 7.636150 AGATCCAAATTTGATCAAGTACTGG 57.364 36.000 19.86 18.72 0.00 4.00
439 472 7.405292 AGATCCAAATTTGATCAAGTACTGGA 58.595 34.615 24.78 24.78 35.06 3.86
440 473 6.817765 TCCAAATTTGATCAAGTACTGGAC 57.182 37.500 21.45 0.00 0.00 4.02
441 474 6.542821 TCCAAATTTGATCAAGTACTGGACT 58.457 36.000 21.45 0.00 41.56 3.85
442 475 7.685481 TCCAAATTTGATCAAGTACTGGACTA 58.315 34.615 21.45 8.29 37.44 2.59
443 476 8.160765 TCCAAATTTGATCAAGTACTGGACTAA 58.839 33.333 21.45 0.00 37.44 2.24
444 477 8.792633 CCAAATTTGATCAAGTACTGGACTAAA 58.207 33.333 19.86 7.57 37.44 1.85
525 558 9.802039 AGGTTTTCTATGGTATAAGTTTTGTGA 57.198 29.630 0.00 0.00 0.00 3.58
531 564 9.817809 TCTATGGTATAAGTTTTGTGAGATGTC 57.182 33.333 0.00 0.00 0.00 3.06
532 565 9.599866 CTATGGTATAAGTTTTGTGAGATGTCA 57.400 33.333 0.00 0.00 0.00 3.58
534 567 8.862325 TGGTATAAGTTTTGTGAGATGTCATT 57.138 30.769 0.00 0.00 34.36 2.57
535 568 9.295825 TGGTATAAGTTTTGTGAGATGTCATTT 57.704 29.630 0.00 0.00 34.36 2.32
589 622 5.912892 TTTGAGTCAAAATGAAAGGGAACC 58.087 37.500 15.92 0.00 38.65 3.62
590 623 5.660864 TTTGAGTCAAAATGAAAGGGAACCT 59.339 36.000 15.92 0.00 46.48 3.50
591 624 6.836527 TTTGAGTCAAAATGAAAGGGAACCTA 59.163 34.615 15.92 0.00 44.70 3.08
592 625 7.343316 TTTGAGTCAAAATGAAAGGGAACCTAA 59.657 33.333 15.92 0.00 44.70 2.69
611 644 7.023197 ACCTAATAAATCCAAACGTGCATAC 57.977 36.000 0.00 0.00 0.00 2.39
614 647 8.779303 CCTAATAAATCCAAACGTGCATACATA 58.221 33.333 0.00 0.00 0.00 2.29
623 656 7.040617 TCCAAACGTGCATACATAAAACCTTTA 60.041 33.333 0.00 0.00 0.00 1.85
633 666 9.019764 CATACATAAAACCTTTAAAATCCTGCG 57.980 33.333 0.00 0.00 0.00 5.18
636 669 7.759433 ACATAAAACCTTTAAAATCCTGCGATG 59.241 33.333 0.00 0.00 0.00 3.84
639 672 6.827586 AACCTTTAAAATCCTGCGATGTTA 57.172 33.333 0.00 0.00 28.45 2.41
646 679 4.924305 AATCCTGCGATGTTAATGCATT 57.076 36.364 17.56 17.56 38.07 3.56
649 682 3.313249 TCCTGCGATGTTAATGCATTCAG 59.687 43.478 16.86 14.26 38.07 3.02
650 683 3.065786 CCTGCGATGTTAATGCATTCAGT 59.934 43.478 16.86 0.48 38.07 3.41
651 684 4.439153 CCTGCGATGTTAATGCATTCAGTT 60.439 41.667 16.86 0.00 38.07 3.16
654 687 4.438608 GCGATGTTAATGCATTCAGTTGGA 60.439 41.667 16.86 0.00 0.00 3.53
666 1965 6.939730 TGCATTCAGTTGGATGTTAAACTCTA 59.060 34.615 2.54 0.00 34.41 2.43
667 1966 7.611467 TGCATTCAGTTGGATGTTAAACTCTAT 59.389 33.333 2.54 0.00 34.41 1.98
691 1990 8.768957 ATGATTCGAGATTACACAATGATAGG 57.231 34.615 0.00 0.00 0.00 2.57
692 1991 7.726216 TGATTCGAGATTACACAATGATAGGT 58.274 34.615 0.00 0.00 0.00 3.08
694 1993 8.964476 ATTCGAGATTACACAATGATAGGTTT 57.036 30.769 0.00 0.00 0.00 3.27
695 1994 8.420374 TTCGAGATTACACAATGATAGGTTTC 57.580 34.615 0.00 0.00 0.00 2.78
697 1996 8.258007 TCGAGATTACACAATGATAGGTTTCTT 58.742 33.333 0.00 0.00 0.00 2.52
701 2000 9.573133 GATTACACAATGATAGGTTTCTTTTGG 57.427 33.333 0.00 0.00 0.00 3.28
702 2001 6.976934 ACACAATGATAGGTTTCTTTTGGT 57.023 33.333 0.00 0.00 0.00 3.67
703 2002 7.360113 ACACAATGATAGGTTTCTTTTGGTT 57.640 32.000 0.00 0.00 0.00 3.67
704 2003 7.433680 ACACAATGATAGGTTTCTTTTGGTTC 58.566 34.615 0.00 0.00 0.00 3.62
705 2004 7.069331 ACACAATGATAGGTTTCTTTTGGTTCA 59.931 33.333 0.00 0.00 0.00 3.18
706 2005 8.090214 CACAATGATAGGTTTCTTTTGGTTCAT 58.910 33.333 0.00 0.00 0.00 2.57
709 2008 7.938140 TGATAGGTTTCTTTTGGTTCATAGG 57.062 36.000 0.00 0.00 0.00 2.57
710 2009 7.695055 TGATAGGTTTCTTTTGGTTCATAGGA 58.305 34.615 0.00 0.00 0.00 2.94
711 2010 8.336235 TGATAGGTTTCTTTTGGTTCATAGGAT 58.664 33.333 0.00 0.00 0.00 3.24
712 2011 9.847224 GATAGGTTTCTTTTGGTTCATAGGATA 57.153 33.333 0.00 0.00 0.00 2.59
713 2012 9.853177 ATAGGTTTCTTTTGGTTCATAGGATAG 57.147 33.333 0.00 0.00 0.00 2.08
715 2014 7.036863 AGGTTTCTTTTGGTTCATAGGATAGGA 60.037 37.037 0.00 0.00 0.00 2.94
716 2015 7.780271 GGTTTCTTTTGGTTCATAGGATAGGAT 59.220 37.037 0.00 0.00 28.27 3.24
725 2024 9.439461 TGGTTCATAGGATAGGATTATCATAGG 57.561 37.037 0.00 0.00 36.37 2.57
726 2025 9.661954 GGTTCATAGGATAGGATTATCATAGGA 57.338 37.037 0.00 1.09 39.88 2.94
755 2054 9.739276 AGTAATTTTGTAGGAAATGAGATGACA 57.261 29.630 0.00 0.00 30.06 3.58
758 2057 8.585471 ATTTTGTAGGAAATGAGATGACATGT 57.415 30.769 0.00 0.00 0.00 3.21
759 2058 9.685276 ATTTTGTAGGAAATGAGATGACATGTA 57.315 29.630 0.00 0.00 0.00 2.29
760 2059 9.685276 TTTTGTAGGAAATGAGATGACATGTAT 57.315 29.630 0.00 0.00 0.00 2.29
761 2060 8.893219 TTGTAGGAAATGAGATGACATGTATC 57.107 34.615 0.00 2.87 0.00 2.24
762 2061 8.255111 TGTAGGAAATGAGATGACATGTATCT 57.745 34.615 14.05 14.05 37.59 1.98
763 2062 8.363390 TGTAGGAAATGAGATGACATGTATCTC 58.637 37.037 24.04 24.04 46.82 2.75
773 2072 9.368674 GAGATGACATGTATCTCAAATCCTATG 57.631 37.037 24.95 0.00 46.22 2.23
774 2073 9.097946 AGATGACATGTATCTCAAATCCTATGA 57.902 33.333 0.00 0.00 29.05 2.15
775 2074 9.716531 GATGACATGTATCTCAAATCCTATGAA 57.283 33.333 0.00 0.00 0.00 2.57
797 2096 8.964476 TGAATAGGAATAGGAAACAAGATGTC 57.036 34.615 0.00 0.00 0.00 3.06
798 2097 8.548025 TGAATAGGAATAGGAAACAAGATGTCA 58.452 33.333 0.00 0.00 0.00 3.58
799 2098 9.566432 GAATAGGAATAGGAAACAAGATGTCAT 57.434 33.333 0.00 0.00 0.00 3.06
800 2099 9.927081 AATAGGAATAGGAAACAAGATGTCATT 57.073 29.630 0.00 0.00 0.00 2.57
801 2100 9.927081 ATAGGAATAGGAAACAAGATGTCATTT 57.073 29.630 0.00 0.00 0.00 2.32
802 2101 8.059798 AGGAATAGGAAACAAGATGTCATTTG 57.940 34.615 0.00 0.00 0.00 2.32
803 2102 7.123247 AGGAATAGGAAACAAGATGTCATTTGG 59.877 37.037 10.50 0.00 0.00 3.28
804 2103 7.093771 GGAATAGGAAACAAGATGTCATTTGGT 60.094 37.037 10.50 3.75 0.00 3.67
805 2104 7.781324 ATAGGAAACAAGATGTCATTTGGTT 57.219 32.000 9.41 9.41 36.95 3.67
806 2105 5.846203 AGGAAACAAGATGTCATTTGGTTG 58.154 37.500 12.70 6.32 34.55 3.77
807 2106 5.598005 AGGAAACAAGATGTCATTTGGTTGA 59.402 36.000 12.70 0.00 34.55 3.18
808 2107 5.691754 GGAAACAAGATGTCATTTGGTTGAC 59.308 40.000 12.70 0.00 45.05 3.18
872 2171 9.918630 AGTTTTCTATGAAAATGAAATGTGGAG 57.081 29.630 8.43 0.00 31.08 3.86
873 2172 9.143631 GTTTTCTATGAAAATGAAATGTGGAGG 57.856 33.333 8.43 0.00 31.08 4.30
874 2173 8.648698 TTTCTATGAAAATGAAATGTGGAGGA 57.351 30.769 0.00 0.00 0.00 3.71
875 2174 8.827832 TTCTATGAAAATGAAATGTGGAGGAT 57.172 30.769 0.00 0.00 0.00 3.24
876 2175 9.919416 TTCTATGAAAATGAAATGTGGAGGATA 57.081 29.630 0.00 0.00 0.00 2.59
877 2176 9.919416 TCTATGAAAATGAAATGTGGAGGATAA 57.081 29.630 0.00 0.00 0.00 1.75
887 2186 8.477256 TGAAATGTGGAGGATAAAAATCAATCC 58.523 33.333 0.00 0.00 41.77 3.01
919 2218 9.579932 AGAAATAGAAATCCATTCCTATGAACC 57.420 33.333 0.00 0.00 38.94 3.62
920 2219 9.354673 GAAATAGAAATCCATTCCTATGAACCA 57.645 33.333 0.00 0.00 38.94 3.67
921 2220 9.713684 AAATAGAAATCCATTCCTATGAACCAA 57.286 29.630 0.00 0.00 38.94 3.67
922 2221 9.713684 AATAGAAATCCATTCCTATGAACCAAA 57.286 29.630 0.00 0.00 38.94 3.28
923 2222 7.651027 AGAAATCCATTCCTATGAACCAAAG 57.349 36.000 0.00 0.00 38.94 2.77
924 2223 6.608808 AGAAATCCATTCCTATGAACCAAAGG 59.391 38.462 0.00 0.00 38.94 3.11
925 2224 5.732331 ATCCATTCCTATGAACCAAAGGA 57.268 39.130 0.00 0.00 37.64 3.36
926 2225 5.732331 TCCATTCCTATGAACCAAAGGAT 57.268 39.130 0.00 0.00 39.14 3.24
927 2226 6.091076 TCCATTCCTATGAACCAAAGGATT 57.909 37.500 0.00 0.00 39.14 3.01
928 2227 6.502138 TCCATTCCTATGAACCAAAGGATTT 58.498 36.000 0.00 0.00 39.14 2.17
929 2228 6.959366 TCCATTCCTATGAACCAAAGGATTTT 59.041 34.615 0.00 0.00 39.14 1.82
930 2229 8.119246 TCCATTCCTATGAACCAAAGGATTTTA 58.881 33.333 0.00 0.00 39.14 1.52
931 2230 8.757877 CCATTCCTATGAACCAAAGGATTTTAA 58.242 33.333 0.00 0.00 39.14 1.52
935 2234 9.594936 TCCTATGAACCAAAGGATTTTAAAAGA 57.405 29.630 6.79 0.00 35.03 2.52
991 2290 8.919777 ATTCCTATAAAATTCCTCTAAACCCG 57.080 34.615 0.00 0.00 0.00 5.28
992 2291 7.441903 TCCTATAAAATTCCTCTAAACCCGT 57.558 36.000 0.00 0.00 0.00 5.28
993 2292 7.503549 TCCTATAAAATTCCTCTAAACCCGTC 58.496 38.462 0.00 0.00 0.00 4.79
994 2293 7.346436 TCCTATAAAATTCCTCTAAACCCGTCT 59.654 37.037 0.00 0.00 0.00 4.18
995 2294 8.645110 CCTATAAAATTCCTCTAAACCCGTCTA 58.355 37.037 0.00 0.00 0.00 2.59
997 2296 8.728337 ATAAAATTCCTCTAAACCCGTCTAAC 57.272 34.615 0.00 0.00 0.00 2.34
998 2297 3.855689 TTCCTCTAAACCCGTCTAACG 57.144 47.619 0.00 0.00 42.11 3.18
999 2298 3.071874 TCCTCTAAACCCGTCTAACGA 57.928 47.619 0.24 0.00 46.05 3.85
1000 2299 3.012518 TCCTCTAAACCCGTCTAACGAG 58.987 50.000 0.24 0.00 46.05 4.18
1001 2300 2.751806 CCTCTAAACCCGTCTAACGAGT 59.248 50.000 0.24 0.00 46.05 4.18
1002 2301 3.192212 CCTCTAAACCCGTCTAACGAGTT 59.808 47.826 0.24 0.00 44.28 3.01
1003 2302 4.164294 CTCTAAACCCGTCTAACGAGTTG 58.836 47.826 0.16 0.00 41.61 3.16
1004 2303 1.505425 AAACCCGTCTAACGAGTTGC 58.495 50.000 0.16 0.00 41.61 4.17
1005 2304 0.677842 AACCCGTCTAACGAGTTGCT 59.322 50.000 0.24 0.00 40.94 3.91
1006 2305 0.038526 ACCCGTCTAACGAGTTGCTG 60.039 55.000 0.24 0.00 46.05 4.41
1007 2306 1.352156 CCCGTCTAACGAGTTGCTGC 61.352 60.000 0.24 0.00 46.05 5.25
1008 2307 1.674611 CCGTCTAACGAGTTGCTGCG 61.675 60.000 0.24 0.00 46.05 5.18
1009 2308 1.002250 CGTCTAACGAGTTGCTGCGT 61.002 55.000 0.00 0.00 46.05 5.24
1010 2309 0.435008 GTCTAACGAGTTGCTGCGTG 59.565 55.000 0.00 0.00 41.06 5.34
1011 2310 1.130613 CTAACGAGTTGCTGCGTGC 59.869 57.895 0.00 0.00 41.06 5.34
1020 2319 3.333414 GCTGCGTGCAGACTTGAA 58.667 55.556 25.09 0.00 46.30 2.69
1021 2320 1.206072 GCTGCGTGCAGACTTGAAG 59.794 57.895 25.09 0.00 46.30 3.02
1022 2321 1.206072 CTGCGTGCAGACTTGAAGC 59.794 57.895 16.69 0.00 46.30 3.86
1023 2322 1.501337 CTGCGTGCAGACTTGAAGCA 61.501 55.000 16.69 0.00 46.30 3.91
1024 2323 1.094650 TGCGTGCAGACTTGAAGCAA 61.095 50.000 0.00 0.00 40.35 3.91
1025 2324 0.385223 GCGTGCAGACTTGAAGCAAG 60.385 55.000 5.67 5.67 45.85 4.01
1038 2337 4.133796 GCAAGTTGATGCCGGGCC 62.134 66.667 17.97 1.91 40.49 5.80
1039 2338 2.361610 CAAGTTGATGCCGGGCCT 60.362 61.111 17.97 6.52 0.00 5.19
1046 2345 4.115199 ATGCCGGGCCTTGGACTC 62.115 66.667 17.97 1.93 0.00 3.36
1104 2403 3.313012 TCGTAACTTGACATGACAGGG 57.687 47.619 11.55 5.67 0.00 4.45
1126 2425 3.024547 ACAGCACGTAGTACATCATCCT 58.975 45.455 0.38 0.00 41.61 3.24
1133 2432 3.553096 CGTAGTACATCATCCTTCCAGCC 60.553 52.174 0.38 0.00 0.00 4.85
1148 2447 0.249120 CAGCCTACCCACGTGATTGA 59.751 55.000 19.30 0.00 0.00 2.57
1149 2448 0.537188 AGCCTACCCACGTGATTGAG 59.463 55.000 19.30 8.34 0.00 3.02
1150 2449 0.535335 GCCTACCCACGTGATTGAGA 59.465 55.000 19.30 0.00 0.00 3.27
1151 2450 1.471676 GCCTACCCACGTGATTGAGAG 60.472 57.143 19.30 5.10 0.00 3.20
1152 2451 1.137086 CCTACCCACGTGATTGAGAGG 59.863 57.143 19.30 10.27 0.00 3.69
1153 2452 2.100197 CTACCCACGTGATTGAGAGGA 58.900 52.381 19.30 0.00 0.00 3.71
1154 2453 1.573108 ACCCACGTGATTGAGAGGAT 58.427 50.000 19.30 0.00 0.00 3.24
1155 2454 1.909302 ACCCACGTGATTGAGAGGATT 59.091 47.619 19.30 0.00 0.00 3.01
1156 2455 2.283298 CCCACGTGATTGAGAGGATTG 58.717 52.381 19.30 0.00 0.00 2.67
1157 2456 2.093500 CCCACGTGATTGAGAGGATTGA 60.093 50.000 19.30 0.00 0.00 2.57
1181 2480 1.421268 AGGCAAAGATATGATCCCGCA 59.579 47.619 0.00 0.00 0.00 5.69
1186 2485 4.331168 GCAAAGATATGATCCCGCATAGAC 59.669 45.833 0.00 0.00 34.50 2.59
1220 2519 3.877951 AGCCAGATTCCTCTTGCTG 57.122 52.632 0.87 0.00 45.92 4.41
1224 2523 1.407989 CCAGATTCCTCTTGCTGGGAC 60.408 57.143 0.00 0.00 43.22 4.46
1225 2524 0.539051 AGATTCCTCTTGCTGGGACG 59.461 55.000 0.00 0.00 0.00 4.79
1233 2532 3.190874 CTCTTGCTGGGACGAGTATTTC 58.809 50.000 0.00 0.00 0.00 2.17
1253 2552 9.017669 GTATTTCTCTTTCACATTTGATCATGC 57.982 33.333 0.00 0.00 0.00 4.06
1340 2644 9.685828 GAGTAATACTCCTAGATAACTTTGCAG 57.314 37.037 9.19 0.00 39.28 4.41
1345 2649 7.102847 ACTCCTAGATAACTTTGCAGTACTC 57.897 40.000 0.00 0.00 30.68 2.59
1346 2650 6.663953 ACTCCTAGATAACTTTGCAGTACTCA 59.336 38.462 0.00 0.00 30.68 3.41
1347 2651 7.178628 ACTCCTAGATAACTTTGCAGTACTCAA 59.821 37.037 0.00 0.00 30.68 3.02
1348 2652 8.079211 TCCTAGATAACTTTGCAGTACTCAAT 57.921 34.615 0.00 0.00 30.68 2.57
1349 2653 8.540388 TCCTAGATAACTTTGCAGTACTCAATT 58.460 33.333 0.00 0.00 30.68 2.32
1350 2654 8.607459 CCTAGATAACTTTGCAGTACTCAATTG 58.393 37.037 0.00 0.00 30.68 2.32
1351 2655 6.846350 AGATAACTTTGCAGTACTCAATTGC 58.154 36.000 0.00 0.00 38.30 3.56
1352 2656 3.923017 ACTTTGCAGTACTCAATTGCC 57.077 42.857 0.00 0.00 37.03 4.52
1353 2657 3.221771 ACTTTGCAGTACTCAATTGCCA 58.778 40.909 0.00 0.00 37.03 4.92
1354 2658 3.004734 ACTTTGCAGTACTCAATTGCCAC 59.995 43.478 0.00 0.00 37.03 5.01
1357 2661 3.156293 TGCAGTACTCAATTGCCACAAT 58.844 40.909 0.00 0.00 37.03 2.71
1358 2662 3.573538 TGCAGTACTCAATTGCCACAATT 59.426 39.130 0.00 0.00 37.03 2.32
1359 2663 4.039004 TGCAGTACTCAATTGCCACAATTT 59.961 37.500 0.00 0.00 37.03 1.82
1361 2665 5.119125 GCAGTACTCAATTGCCACAATTTTC 59.881 40.000 0.00 0.00 31.79 2.29
1363 2667 6.364165 CAGTACTCAATTGCCACAATTTTCAG 59.636 38.462 0.00 3.26 0.00 3.02
1365 2669 5.291971 ACTCAATTGCCACAATTTTCAGTC 58.708 37.500 0.00 0.00 0.00 3.51
1366 2670 4.630111 TCAATTGCCACAATTTTCAGTCC 58.370 39.130 0.00 0.00 0.00 3.85
1368 2672 4.895668 ATTGCCACAATTTTCAGTCCAT 57.104 36.364 0.00 0.00 0.00 3.41
1369 2673 4.686191 TTGCCACAATTTTCAGTCCATT 57.314 36.364 0.00 0.00 0.00 3.16
1371 2675 5.033589 TGCCACAATTTTCAGTCCATTTT 57.966 34.783 0.00 0.00 0.00 1.82
1372 2676 5.435291 TGCCACAATTTTCAGTCCATTTTT 58.565 33.333 0.00 0.00 0.00 1.94
1373 2677 5.296283 TGCCACAATTTTCAGTCCATTTTTG 59.704 36.000 0.00 0.00 0.00 2.44
1377 2681 8.623030 CCACAATTTTCAGTCCATTTTTGAAAT 58.377 29.630 0.39 0.00 39.67 2.17
1397 2853 8.792830 TGAAATAGGAGTACCATTCTTTCTTG 57.207 34.615 0.00 0.00 38.94 3.02
1398 2854 8.383175 TGAAATAGGAGTACCATTCTTTCTTGT 58.617 33.333 0.00 0.00 38.94 3.16
1399 2855 9.886132 GAAATAGGAGTACCATTCTTTCTTGTA 57.114 33.333 0.00 0.00 38.94 2.41
1401 2857 6.936968 AGGAGTACCATTCTTTCTTGTACT 57.063 37.500 0.00 0.00 43.42 2.73
1402 2858 9.710818 ATAGGAGTACCATTCTTTCTTGTACTA 57.289 33.333 0.00 0.00 41.46 1.82
1403 2859 7.838884 AGGAGTACCATTCTTTCTTGTACTAC 58.161 38.462 0.00 0.00 41.46 2.73
1404 2860 7.674772 AGGAGTACCATTCTTTCTTGTACTACT 59.325 37.037 6.97 6.97 44.80 2.57
1405 2861 8.964772 GGAGTACCATTCTTTCTTGTACTACTA 58.035 37.037 0.00 0.00 41.46 1.82
1440 3221 6.361214 CCACAATTTTGGTGTTAACATACGTC 59.639 38.462 12.26 0.00 34.46 4.34
1479 3260 2.989824 CGGTGTCAGACGAGGGGT 60.990 66.667 0.00 0.00 0.00 4.95
1814 3595 3.003763 GTCCCCTTCCGCTCCTGT 61.004 66.667 0.00 0.00 0.00 4.00
1853 3634 0.105593 CCAGCGTCATGTGCTCCTAT 59.894 55.000 11.42 0.00 41.72 2.57
1946 3727 0.545171 TCGAGGGGTACATCGTCTCT 59.455 55.000 12.28 0.00 39.86 3.10
2138 3919 2.898343 GCCGTCACCAACACCGTT 60.898 61.111 0.00 0.00 0.00 4.44
2174 3955 2.726274 GGGATGTACGACGGCGAT 59.274 61.111 22.49 0.00 41.64 4.58
2291 4072 3.479269 CTCAAGAACGACGGCGCC 61.479 66.667 19.07 19.07 42.48 6.53
2331 4112 4.969196 CGCACCACACAGTCGCCT 62.969 66.667 0.00 0.00 0.00 5.52
2447 4228 3.676646 GGTACGTGAAGACCACATTACAC 59.323 47.826 0.00 0.00 45.98 2.90
2815 4596 4.020039 CCACAACCCAGGTATGTACACTTA 60.020 45.833 0.00 0.00 0.00 2.24
2891 4672 7.728847 ATTTACCAAAAATTGAAGCAAGGAC 57.271 32.000 0.00 0.00 0.00 3.85
2994 4775 1.922135 GCGCCGATGACAAACATGGT 61.922 55.000 0.00 0.00 39.56 3.55
3070 4851 2.349755 CCGACCATCCACCCGTTT 59.650 61.111 0.00 0.00 0.00 3.60
3181 4965 2.266055 GCCTCCTCCCTCAACACG 59.734 66.667 0.00 0.00 0.00 4.49
3258 5048 3.702048 CATCCCGGTCCACGTGGT 61.702 66.667 32.74 10.28 42.24 4.16
3366 5156 2.356313 CGCTCGTCAGCTGGTTGT 60.356 61.111 15.13 0.00 44.40 3.32
3515 5305 2.973180 GATCGGCGAGCTAACCCACC 62.973 65.000 19.09 0.00 0.00 4.61
3564 5354 3.448686 CAGTGTAGTGGCTAAGGATTCG 58.551 50.000 0.00 0.00 0.00 3.34
3569 5359 1.906574 AGTGGCTAAGGATTCGGACAA 59.093 47.619 0.00 0.00 0.00 3.18
3588 5378 3.949754 ACAATAGCCATGGATGTCAACAG 59.050 43.478 18.40 0.00 0.00 3.16
3630 5420 2.601240 TGGATTTTCATGGTGCCAGA 57.399 45.000 0.00 0.00 0.00 3.86
3789 5582 4.129380 TCCATGTATTCCTGAATCTTGCG 58.871 43.478 0.00 0.00 32.50 4.85
3803 5596 5.931724 TGAATCTTGCGTCTACTTTGATTGA 59.068 36.000 0.00 0.00 0.00 2.57
3955 6174 1.398692 AACATGCCAACCGAGTTGTT 58.601 45.000 13.41 2.12 41.41 2.83
3984 6203 1.153429 GAGCCATCCACCACGGTAC 60.153 63.158 0.00 0.00 35.57 3.34
4002 6221 1.887797 ACCCCTATCGGTCCATGAAA 58.112 50.000 0.00 0.00 0.00 2.69
4020 6239 2.969443 AATTGTTCGCTTGTCCGAAG 57.031 45.000 0.00 0.00 46.51 3.79
4043 6273 1.353022 ACGCAAACCAGGGGAGATTTA 59.647 47.619 0.00 0.00 0.00 1.40
4049 6279 1.632018 CCAGGGGAGATTTACGGGCA 61.632 60.000 0.00 0.00 0.00 5.36
4069 6299 2.415843 CGGACCGCCATCACGTAT 59.584 61.111 0.00 0.00 0.00 3.06
4088 6318 1.303317 GCCGACACCTTGGTTCCAT 60.303 57.895 0.00 0.00 0.00 3.41
4107 6337 3.347216 CATCCAAAAAGATCTCCCACGT 58.653 45.455 0.00 0.00 0.00 4.49
4112 6342 1.488705 AAAGATCTCCCACGTGGCCA 61.489 55.000 29.75 16.26 0.00 5.36
4151 6381 2.093606 TCGTATTAATGCCGGTCCACAA 60.094 45.455 1.90 0.00 0.00 3.33
4182 6412 1.003928 TGGTCACTAGAGCCGTCACTA 59.996 52.381 0.00 0.00 41.53 2.74
4353 6584 0.530744 ACGGCAGCTTACGAAGATCA 59.469 50.000 13.21 0.00 0.00 2.92
4378 6609 3.458163 CGCGGGGTAGGCTCTTCA 61.458 66.667 0.00 0.00 0.00 3.02
4411 6642 1.303561 CAGCCCTTGCAGTTGCCTA 60.304 57.895 1.06 0.00 41.13 3.93
4454 6685 2.287188 GGCGGATGTATGCAATGTCTTG 60.287 50.000 0.00 0.00 35.36 3.02
4457 6688 3.290710 GGATGTATGCAATGTCTTGGGT 58.709 45.455 0.00 0.00 32.72 4.51
4519 6750 2.100631 CAAGCCACGTCGGATGGTC 61.101 63.158 8.04 0.00 39.63 4.02
4552 6783 2.369001 GTGGGGGAGGCTAGGAGT 59.631 66.667 0.00 0.00 0.00 3.85
4556 6787 1.690985 GGGGAGGCTAGGAGTTGCT 60.691 63.158 0.00 0.00 0.00 3.91
4561 6792 1.410882 GAGGCTAGGAGTTGCTCGATT 59.589 52.381 0.00 0.00 0.00 3.34
4622 6853 1.850755 GGGTTTCAGGTGGGGGAGA 60.851 63.158 0.00 0.00 0.00 3.71
4653 6891 1.553690 GGGAAGTGGCTAGAGTGGCA 61.554 60.000 0.00 0.00 40.25 4.92
4669 6907 0.322546 GGCAGTTGTGGTAGGAAGGG 60.323 60.000 0.00 0.00 0.00 3.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 0.114364 AGGAATTCCACCCACCAACC 59.886 55.000 26.22 0.00 38.89 3.77
24 30 0.541764 TGGCCAACCAGGAATTCCAC 60.542 55.000 26.22 6.32 42.67 4.02
25 31 1.857049 TGGCCAACCAGGAATTCCA 59.143 52.632 26.22 0.00 42.67 3.53
26 32 4.863415 TGGCCAACCAGGAATTCC 57.137 55.556 17.31 17.31 42.67 3.01
105 111 7.011389 CCGAGATCTGATTAGCTAGAGACATAG 59.989 44.444 0.00 0.00 0.00 2.23
106 112 6.821160 CCGAGATCTGATTAGCTAGAGACATA 59.179 42.308 0.00 0.00 0.00 2.29
107 113 5.647658 CCGAGATCTGATTAGCTAGAGACAT 59.352 44.000 0.00 0.00 0.00 3.06
108 114 5.000591 CCGAGATCTGATTAGCTAGAGACA 58.999 45.833 0.00 0.00 0.00 3.41
109 115 4.142687 GCCGAGATCTGATTAGCTAGAGAC 60.143 50.000 0.00 0.00 0.00 3.36
110 116 4.006989 GCCGAGATCTGATTAGCTAGAGA 58.993 47.826 0.00 0.00 0.00 3.10
111 117 3.181511 CGCCGAGATCTGATTAGCTAGAG 60.182 52.174 0.00 0.00 0.00 2.43
112 118 2.744741 CGCCGAGATCTGATTAGCTAGA 59.255 50.000 0.00 0.00 0.00 2.43
113 119 2.486203 ACGCCGAGATCTGATTAGCTAG 59.514 50.000 0.00 0.00 0.00 3.42
114 120 2.226674 CACGCCGAGATCTGATTAGCTA 59.773 50.000 0.00 0.00 0.00 3.32
115 121 1.000827 CACGCCGAGATCTGATTAGCT 60.001 52.381 0.00 0.00 0.00 3.32
116 122 1.269309 ACACGCCGAGATCTGATTAGC 60.269 52.381 0.00 0.00 0.00 3.09
130 148 3.859411 TGATTTCCCAAATTACACGCC 57.141 42.857 0.00 0.00 0.00 5.68
167 185 5.585047 ACAGTGATTAGGCTATTTCCGTTTC 59.415 40.000 0.00 0.00 0.00 2.78
179 197 4.503741 TTGAAAGCAACAGTGATTAGGC 57.496 40.909 0.00 0.00 30.32 3.93
198 216 6.449515 CGTCGCGTAGTATTAGATCGATTTTG 60.450 42.308 5.77 0.00 0.00 2.44
204 222 2.156504 ACCGTCGCGTAGTATTAGATCG 59.843 50.000 5.77 0.00 0.00 3.69
212 230 1.016627 ATTAGCACCGTCGCGTAGTA 58.983 50.000 5.77 0.00 36.85 1.82
213 231 1.016627 TATTAGCACCGTCGCGTAGT 58.983 50.000 5.77 0.00 36.85 2.73
214 232 2.095869 AGATATTAGCACCGTCGCGTAG 60.096 50.000 5.77 0.59 36.85 3.51
223 241 3.470645 ACGAACCCAGATATTAGCACC 57.529 47.619 0.00 0.00 0.00 5.01
239 257 3.859627 GCCAACAACTACTGAGCTACGAA 60.860 47.826 0.00 0.00 0.00 3.85
241 259 1.993370 GCCAACAACTACTGAGCTACG 59.007 52.381 0.00 0.00 0.00 3.51
242 260 3.320673 AGCCAACAACTACTGAGCTAC 57.679 47.619 0.00 0.00 30.96 3.58
243 261 3.578716 AGAAGCCAACAACTACTGAGCTA 59.421 43.478 0.00 0.00 31.97 3.32
331 350 3.806316 AAAACGATTGAAGGCAGTACG 57.194 42.857 0.00 0.00 0.00 3.67
332 351 6.795593 GTCTTAAAAACGATTGAAGGCAGTAC 59.204 38.462 0.00 0.00 0.00 2.73
362 395 7.008810 CAGACGAAGATAGTAGCAAAAAGTCTC 59.991 40.741 0.00 0.00 32.58 3.36
372 405 9.562583 CTAATAAATCCAGACGAAGATAGTAGC 57.437 37.037 0.00 0.00 0.00 3.58
375 408 7.379750 GCCTAATAAATCCAGACGAAGATAGT 58.620 38.462 0.00 0.00 0.00 2.12
376 409 6.814146 GGCCTAATAAATCCAGACGAAGATAG 59.186 42.308 0.00 0.00 0.00 2.08
377 410 6.295688 GGGCCTAATAAATCCAGACGAAGATA 60.296 42.308 0.84 0.00 0.00 1.98
378 411 5.513267 GGGCCTAATAAATCCAGACGAAGAT 60.513 44.000 0.84 0.00 0.00 2.40
379 412 4.202326 GGGCCTAATAAATCCAGACGAAGA 60.202 45.833 0.84 0.00 0.00 2.87
380 413 4.065789 GGGCCTAATAAATCCAGACGAAG 58.934 47.826 0.84 0.00 0.00 3.79
381 414 3.714798 AGGGCCTAATAAATCCAGACGAA 59.285 43.478 2.82 0.00 0.00 3.85
382 415 3.314693 AGGGCCTAATAAATCCAGACGA 58.685 45.455 2.82 0.00 0.00 4.20
383 416 3.325135 AGAGGGCCTAATAAATCCAGACG 59.675 47.826 5.73 0.00 0.00 4.18
384 417 4.984146 AGAGGGCCTAATAAATCCAGAC 57.016 45.455 5.73 0.00 0.00 3.51
385 418 4.726825 ACAAGAGGGCCTAATAAATCCAGA 59.273 41.667 5.73 0.00 0.00 3.86
386 419 5.053978 ACAAGAGGGCCTAATAAATCCAG 57.946 43.478 5.73 0.00 0.00 3.86
387 420 5.670361 AGTACAAGAGGGCCTAATAAATCCA 59.330 40.000 5.73 0.00 0.00 3.41
388 421 6.189036 AGTACAAGAGGGCCTAATAAATCC 57.811 41.667 5.73 0.00 0.00 3.01
389 422 9.274206 CTAAAGTACAAGAGGGCCTAATAAATC 57.726 37.037 5.73 0.00 0.00 2.17
390 423 8.999895 TCTAAAGTACAAGAGGGCCTAATAAAT 58.000 33.333 5.73 0.00 0.00 1.40
391 424 8.383374 TCTAAAGTACAAGAGGGCCTAATAAA 57.617 34.615 5.73 0.00 0.00 1.40
392 425 7.983166 TCTAAAGTACAAGAGGGCCTAATAA 57.017 36.000 5.73 0.00 0.00 1.40
393 426 7.234988 GGATCTAAAGTACAAGAGGGCCTAATA 59.765 40.741 5.73 0.00 0.00 0.98
394 427 6.043358 GGATCTAAAGTACAAGAGGGCCTAAT 59.957 42.308 5.73 0.00 0.00 1.73
395 428 5.365895 GGATCTAAAGTACAAGAGGGCCTAA 59.634 44.000 5.73 0.00 0.00 2.69
396 429 4.900054 GGATCTAAAGTACAAGAGGGCCTA 59.100 45.833 5.73 0.00 0.00 3.93
397 430 3.712218 GGATCTAAAGTACAAGAGGGCCT 59.288 47.826 5.25 5.25 0.00 5.19
398 431 3.454812 TGGATCTAAAGTACAAGAGGGCC 59.545 47.826 0.00 0.00 0.00 5.80
399 432 4.755266 TGGATCTAAAGTACAAGAGGGC 57.245 45.455 0.00 0.00 0.00 5.19
400 433 8.462016 CAAATTTGGATCTAAAGTACAAGAGGG 58.538 37.037 10.49 0.00 0.00 4.30
401 434 9.231297 TCAAATTTGGATCTAAAGTACAAGAGG 57.769 33.333 17.90 0.00 0.00 3.69
412 445 9.177608 CCAGTACTTGATCAAATTTGGATCTAA 57.822 33.333 17.90 13.16 41.35 2.10
413 446 8.548025 TCCAGTACTTGATCAAATTTGGATCTA 58.452 33.333 17.90 13.72 41.35 1.98
414 447 7.337942 GTCCAGTACTTGATCAAATTTGGATCT 59.662 37.037 22.80 7.06 41.35 2.75
415 448 7.337942 AGTCCAGTACTTGATCAAATTTGGATC 59.662 37.037 22.80 17.34 41.20 3.36
416 449 7.177878 AGTCCAGTACTTGATCAAATTTGGAT 58.822 34.615 22.80 10.02 33.35 3.41
417 450 6.542821 AGTCCAGTACTTGATCAAATTTGGA 58.457 36.000 17.90 19.01 33.35 3.53
418 451 6.824305 AGTCCAGTACTTGATCAAATTTGG 57.176 37.500 17.90 13.87 33.35 3.28
499 532 9.802039 TCACAAAACTTATACCATAGAAAACCT 57.198 29.630 0.00 0.00 0.00 3.50
505 538 9.817809 GACATCTCACAAAACTTATACCATAGA 57.182 33.333 0.00 0.00 0.00 1.98
506 539 9.599866 TGACATCTCACAAAACTTATACCATAG 57.400 33.333 0.00 0.00 0.00 2.23
508 541 9.466497 AATGACATCTCACAAAACTTATACCAT 57.534 29.630 0.00 0.00 0.00 3.55
509 542 8.862325 AATGACATCTCACAAAACTTATACCA 57.138 30.769 0.00 0.00 0.00 3.25
565 598 6.156083 AGGTTCCCTTTCATTTTGACTCAAAA 59.844 34.615 17.31 17.31 45.41 2.44
566 599 5.660864 AGGTTCCCTTTCATTTTGACTCAAA 59.339 36.000 0.00 0.00 0.00 2.69
567 600 5.208121 AGGTTCCCTTTCATTTTGACTCAA 58.792 37.500 0.00 0.00 0.00 3.02
568 601 4.803452 AGGTTCCCTTTCATTTTGACTCA 58.197 39.130 0.00 0.00 0.00 3.41
569 602 6.894339 TTAGGTTCCCTTTCATTTTGACTC 57.106 37.500 0.00 0.00 34.61 3.36
570 603 8.950007 TTATTAGGTTCCCTTTCATTTTGACT 57.050 30.769 0.00 0.00 34.61 3.41
573 606 9.599866 GGATTTATTAGGTTCCCTTTCATTTTG 57.400 33.333 0.00 0.00 34.61 2.44
574 607 9.332713 TGGATTTATTAGGTTCCCTTTCATTTT 57.667 29.630 0.00 0.00 34.61 1.82
575 608 8.909423 TGGATTTATTAGGTTCCCTTTCATTT 57.091 30.769 0.00 0.00 34.61 2.32
576 609 8.909423 TTGGATTTATTAGGTTCCCTTTCATT 57.091 30.769 0.00 0.00 34.61 2.57
577 610 8.758829 GTTTGGATTTATTAGGTTCCCTTTCAT 58.241 33.333 0.00 0.00 34.61 2.57
578 611 7.094118 CGTTTGGATTTATTAGGTTCCCTTTCA 60.094 37.037 0.00 0.00 34.61 2.69
579 612 7.094075 ACGTTTGGATTTATTAGGTTCCCTTTC 60.094 37.037 0.00 0.00 34.61 2.62
580 613 6.722590 ACGTTTGGATTTATTAGGTTCCCTTT 59.277 34.615 0.00 0.00 34.61 3.11
581 614 6.152154 CACGTTTGGATTTATTAGGTTCCCTT 59.848 38.462 0.00 0.00 34.61 3.95
582 615 5.650703 CACGTTTGGATTTATTAGGTTCCCT 59.349 40.000 0.00 0.00 37.71 4.20
583 616 5.677852 GCACGTTTGGATTTATTAGGTTCCC 60.678 44.000 0.00 0.00 0.00 3.97
584 617 5.106078 TGCACGTTTGGATTTATTAGGTTCC 60.106 40.000 0.00 0.00 0.00 3.62
585 618 5.945155 TGCACGTTTGGATTTATTAGGTTC 58.055 37.500 0.00 0.00 0.00 3.62
586 619 5.968528 TGCACGTTTGGATTTATTAGGTT 57.031 34.783 0.00 0.00 0.00 3.50
587 620 6.600032 TGTATGCACGTTTGGATTTATTAGGT 59.400 34.615 0.00 0.00 35.09 3.08
588 621 7.022055 TGTATGCACGTTTGGATTTATTAGG 57.978 36.000 0.00 0.00 35.09 2.69
591 624 9.862371 TTTTATGTATGCACGTTTGGATTTATT 57.138 25.926 0.00 0.00 35.09 1.40
592 625 9.296400 GTTTTATGTATGCACGTTTGGATTTAT 57.704 29.630 0.00 0.00 35.09 1.40
593 626 7.755822 GGTTTTATGTATGCACGTTTGGATTTA 59.244 33.333 0.00 0.00 35.09 1.40
594 627 6.588373 GGTTTTATGTATGCACGTTTGGATTT 59.412 34.615 0.00 0.00 35.09 2.17
595 628 6.071616 AGGTTTTATGTATGCACGTTTGGATT 60.072 34.615 0.00 0.00 35.09 3.01
596 629 5.417580 AGGTTTTATGTATGCACGTTTGGAT 59.582 36.000 0.00 0.00 37.57 3.41
597 630 4.762765 AGGTTTTATGTATGCACGTTTGGA 59.237 37.500 0.00 0.00 0.00 3.53
598 631 5.054390 AGGTTTTATGTATGCACGTTTGG 57.946 39.130 0.00 0.00 0.00 3.28
599 632 8.508800 TTAAAGGTTTTATGTATGCACGTTTG 57.491 30.769 0.00 0.00 30.44 2.93
600 633 9.530633 TTTTAAAGGTTTTATGTATGCACGTTT 57.469 25.926 0.00 0.00 32.08 3.60
601 634 9.699703 ATTTTAAAGGTTTTATGTATGCACGTT 57.300 25.926 0.00 0.00 0.00 3.99
602 635 9.349145 GATTTTAAAGGTTTTATGTATGCACGT 57.651 29.630 0.00 0.00 0.00 4.49
603 636 8.803799 GGATTTTAAAGGTTTTATGTATGCACG 58.196 33.333 0.00 0.00 0.00 5.34
604 637 9.869757 AGGATTTTAAAGGTTTTATGTATGCAC 57.130 29.630 0.00 0.00 0.00 4.57
605 638 9.868277 CAGGATTTTAAAGGTTTTATGTATGCA 57.132 29.630 0.00 0.00 0.00 3.96
606 639 8.817100 GCAGGATTTTAAAGGTTTTATGTATGC 58.183 33.333 0.00 0.00 0.00 3.14
611 644 7.759433 ACATCGCAGGATTTTAAAGGTTTTATG 59.241 33.333 0.00 0.00 0.00 1.90
614 647 6.096673 ACATCGCAGGATTTTAAAGGTTTT 57.903 33.333 0.00 0.00 0.00 2.43
623 656 4.717233 TGCATTAACATCGCAGGATTTT 57.283 36.364 0.00 0.00 0.00 1.82
633 666 6.567050 ACATCCAACTGAATGCATTAACATC 58.433 36.000 12.97 0.00 0.00 3.06
636 669 8.647226 GTTTAACATCCAACTGAATGCATTAAC 58.353 33.333 12.97 4.17 0.00 2.01
639 672 6.996509 AGTTTAACATCCAACTGAATGCATT 58.003 32.000 12.83 12.83 31.80 3.56
646 679 9.383519 GAATCATAGAGTTTAACATCCAACTGA 57.616 33.333 0.00 0.00 33.22 3.41
649 682 8.420374 TCGAATCATAGAGTTTAACATCCAAC 57.580 34.615 0.00 0.00 0.00 3.77
650 683 8.474831 TCTCGAATCATAGAGTTTAACATCCAA 58.525 33.333 0.00 0.00 36.03 3.53
651 684 8.007405 TCTCGAATCATAGAGTTTAACATCCA 57.993 34.615 0.00 0.00 36.03 3.41
666 1965 8.370940 ACCTATCATTGTGTAATCTCGAATCAT 58.629 33.333 0.00 0.00 0.00 2.45
667 1966 7.726216 ACCTATCATTGTGTAATCTCGAATCA 58.274 34.615 0.00 0.00 0.00 2.57
680 1979 7.432869 TGAACCAAAAGAAACCTATCATTGTG 58.567 34.615 0.00 0.00 0.00 3.33
689 1988 7.036863 TCCTATCCTATGAACCAAAAGAAACCT 60.037 37.037 0.00 0.00 0.00 3.50
690 1989 7.116736 TCCTATCCTATGAACCAAAAGAAACC 58.883 38.462 0.00 0.00 0.00 3.27
691 1990 8.753497 ATCCTATCCTATGAACCAAAAGAAAC 57.247 34.615 0.00 0.00 0.00 2.78
699 1998 9.439461 CCTATGATAATCCTATCCTATGAACCA 57.561 37.037 0.00 0.00 34.10 3.67
700 1999 9.661954 TCCTATGATAATCCTATCCTATGAACC 57.338 37.037 0.00 0.00 34.10 3.62
729 2028 9.739276 TGTCATCTCATTTCCTACAAAATTACT 57.261 29.630 0.00 0.00 0.00 2.24
732 2031 9.028284 ACATGTCATCTCATTTCCTACAAAATT 57.972 29.630 0.00 0.00 0.00 1.82
733 2032 8.585471 ACATGTCATCTCATTTCCTACAAAAT 57.415 30.769 0.00 0.00 0.00 1.82
734 2033 9.685276 ATACATGTCATCTCATTTCCTACAAAA 57.315 29.630 0.00 0.00 0.00 2.44
735 2034 9.330063 GATACATGTCATCTCATTTCCTACAAA 57.670 33.333 0.00 0.00 0.00 2.83
736 2035 8.708378 AGATACATGTCATCTCATTTCCTACAA 58.292 33.333 0.00 0.00 0.00 2.41
737 2036 8.255111 AGATACATGTCATCTCATTTCCTACA 57.745 34.615 0.00 0.00 0.00 2.74
738 2037 8.755696 GAGATACATGTCATCTCATTTCCTAC 57.244 38.462 24.95 8.46 45.17 3.18
747 2046 9.368674 CATAGGATTTGAGATACATGTCATCTC 57.631 37.037 24.04 24.04 45.76 2.75
748 2047 9.097946 TCATAGGATTTGAGATACATGTCATCT 57.902 33.333 0.00 9.42 35.43 2.90
749 2048 9.716531 TTCATAGGATTTGAGATACATGTCATC 57.283 33.333 0.00 4.47 29.66 2.92
771 2070 9.566432 GACATCTTGTTTCCTATTCCTATTCAT 57.434 33.333 0.00 0.00 0.00 2.57
772 2071 8.548025 TGACATCTTGTTTCCTATTCCTATTCA 58.452 33.333 0.00 0.00 0.00 2.57
773 2072 8.964476 TGACATCTTGTTTCCTATTCCTATTC 57.036 34.615 0.00 0.00 0.00 1.75
774 2073 9.927081 AATGACATCTTGTTTCCTATTCCTATT 57.073 29.630 0.00 0.00 0.00 1.73
775 2074 9.927081 AAATGACATCTTGTTTCCTATTCCTAT 57.073 29.630 0.00 0.00 0.00 2.57
776 2075 9.177608 CAAATGACATCTTGTTTCCTATTCCTA 57.822 33.333 0.00 0.00 0.00 2.94
777 2076 7.123247 CCAAATGACATCTTGTTTCCTATTCCT 59.877 37.037 0.00 0.00 0.00 3.36
778 2077 7.093771 ACCAAATGACATCTTGTTTCCTATTCC 60.094 37.037 0.00 0.00 0.00 3.01
779 2078 7.830739 ACCAAATGACATCTTGTTTCCTATTC 58.169 34.615 0.00 0.00 0.00 1.75
780 2079 7.781324 ACCAAATGACATCTTGTTTCCTATT 57.219 32.000 0.00 0.00 0.00 1.73
781 2080 7.451255 TCAACCAAATGACATCTTGTTTCCTAT 59.549 33.333 0.00 0.00 0.00 2.57
782 2081 6.775142 TCAACCAAATGACATCTTGTTTCCTA 59.225 34.615 0.00 0.00 0.00 2.94
783 2082 5.598005 TCAACCAAATGACATCTTGTTTCCT 59.402 36.000 0.00 0.00 0.00 3.36
784 2083 5.841810 TCAACCAAATGACATCTTGTTTCC 58.158 37.500 0.00 0.00 0.00 3.13
846 2145 9.918630 CTCCACATTTCATTTTCATAGAAAACT 57.081 29.630 7.03 0.00 35.20 2.66
847 2146 9.143631 CCTCCACATTTCATTTTCATAGAAAAC 57.856 33.333 7.03 0.00 35.20 2.43
848 2147 9.087871 TCCTCCACATTTCATTTTCATAGAAAA 57.912 29.630 7.30 7.30 35.20 2.29
849 2148 8.648698 TCCTCCACATTTCATTTTCATAGAAA 57.351 30.769 0.00 0.00 35.92 2.52
850 2149 8.827832 ATCCTCCACATTTCATTTTCATAGAA 57.172 30.769 0.00 0.00 0.00 2.10
851 2150 9.919416 TTATCCTCCACATTTCATTTTCATAGA 57.081 29.630 0.00 0.00 0.00 1.98
861 2160 8.477256 GGATTGATTTTTATCCTCCACATTTCA 58.523 33.333 0.00 0.00 37.83 2.69
862 2161 8.699130 AGGATTGATTTTTATCCTCCACATTTC 58.301 33.333 0.00 0.00 45.94 2.17
863 2162 8.613922 AGGATTGATTTTTATCCTCCACATTT 57.386 30.769 0.00 0.00 45.94 2.32
864 2163 9.887862 ATAGGATTGATTTTTATCCTCCACATT 57.112 29.630 6.90 0.00 45.94 2.71
865 2164 9.305555 CATAGGATTGATTTTTATCCTCCACAT 57.694 33.333 6.90 0.00 45.94 3.21
866 2165 8.281531 ACATAGGATTGATTTTTATCCTCCACA 58.718 33.333 6.90 0.00 45.94 4.17
867 2166 8.697507 ACATAGGATTGATTTTTATCCTCCAC 57.302 34.615 6.90 0.00 45.94 4.02
893 2192 9.579932 GGTTCATAGGAATGGATTTCTATTTCT 57.420 33.333 3.33 3.33 36.64 2.52
894 2193 9.354673 TGGTTCATAGGAATGGATTTCTATTTC 57.645 33.333 0.00 0.00 36.64 2.17
895 2194 9.713684 TTGGTTCATAGGAATGGATTTCTATTT 57.286 29.630 0.00 0.00 36.64 1.40
896 2195 9.713684 TTTGGTTCATAGGAATGGATTTCTATT 57.286 29.630 0.00 0.00 36.64 1.73
897 2196 9.359653 CTTTGGTTCATAGGAATGGATTTCTAT 57.640 33.333 0.00 0.00 38.76 1.98
898 2197 7.779798 CCTTTGGTTCATAGGAATGGATTTCTA 59.220 37.037 0.00 0.00 35.14 2.10
899 2198 6.608808 CCTTTGGTTCATAGGAATGGATTTCT 59.391 38.462 0.00 0.00 35.14 2.52
900 2199 6.607198 TCCTTTGGTTCATAGGAATGGATTTC 59.393 38.462 4.94 0.00 38.33 2.17
901 2200 6.502138 TCCTTTGGTTCATAGGAATGGATTT 58.498 36.000 4.94 0.00 38.33 2.17
902 2201 6.091076 TCCTTTGGTTCATAGGAATGGATT 57.909 37.500 4.94 0.00 38.33 3.01
903 2202 5.732331 TCCTTTGGTTCATAGGAATGGAT 57.268 39.130 4.94 0.00 38.33 3.41
904 2203 5.732331 ATCCTTTGGTTCATAGGAATGGA 57.268 39.130 10.27 0.00 42.85 3.41
905 2204 6.796785 AAATCCTTTGGTTCATAGGAATGG 57.203 37.500 10.27 0.00 42.85 3.16
909 2208 9.594936 TCTTTTAAAATCCTTTGGTTCATAGGA 57.405 29.630 0.09 8.99 43.50 2.94
965 2264 9.350951 CGGGTTTAGAGGAATTTTATAGGAATT 57.649 33.333 0.00 0.00 0.00 2.17
966 2265 8.500238 ACGGGTTTAGAGGAATTTTATAGGAAT 58.500 33.333 0.00 0.00 0.00 3.01
967 2266 7.864770 ACGGGTTTAGAGGAATTTTATAGGAA 58.135 34.615 0.00 0.00 0.00 3.36
968 2267 7.346436 AGACGGGTTTAGAGGAATTTTATAGGA 59.654 37.037 0.00 0.00 0.00 2.94
969 2268 7.506971 AGACGGGTTTAGAGGAATTTTATAGG 58.493 38.462 0.00 0.00 0.00 2.57
971 2270 9.822185 GTTAGACGGGTTTAGAGGAATTTTATA 57.178 33.333 0.00 0.00 0.00 0.98
972 2271 7.493645 CGTTAGACGGGTTTAGAGGAATTTTAT 59.506 37.037 0.00 0.00 38.08 1.40
973 2272 6.813152 CGTTAGACGGGTTTAGAGGAATTTTA 59.187 38.462 0.00 0.00 38.08 1.52
974 2273 5.640783 CGTTAGACGGGTTTAGAGGAATTTT 59.359 40.000 0.00 0.00 38.08 1.82
975 2274 5.047092 TCGTTAGACGGGTTTAGAGGAATTT 60.047 40.000 0.27 0.00 42.81 1.82
976 2275 4.463891 TCGTTAGACGGGTTTAGAGGAATT 59.536 41.667 0.27 0.00 42.81 2.17
977 2276 4.019174 TCGTTAGACGGGTTTAGAGGAAT 58.981 43.478 0.27 0.00 42.81 3.01
978 2277 3.420893 TCGTTAGACGGGTTTAGAGGAA 58.579 45.455 0.27 0.00 42.81 3.36
979 2278 3.012518 CTCGTTAGACGGGTTTAGAGGA 58.987 50.000 0.27 0.00 42.81 3.71
980 2279 3.417690 CTCGTTAGACGGGTTTAGAGG 57.582 52.381 0.27 0.00 42.81 3.69
989 2288 1.674611 CGCAGCAACTCGTTAGACGG 61.675 60.000 0.27 0.00 42.81 4.79
990 2289 1.002250 ACGCAGCAACTCGTTAGACG 61.002 55.000 0.00 0.00 44.19 4.18
991 2290 0.435008 CACGCAGCAACTCGTTAGAC 59.565 55.000 0.00 0.00 36.73 2.59
992 2291 1.282248 GCACGCAGCAACTCGTTAGA 61.282 55.000 0.00 0.00 44.79 2.10
993 2292 1.130613 GCACGCAGCAACTCGTTAG 59.869 57.895 0.00 0.00 44.79 2.34
994 2293 3.240203 GCACGCAGCAACTCGTTA 58.760 55.556 0.00 0.00 44.79 3.18
1003 2302 1.206072 CTTCAAGTCTGCACGCAGC 59.794 57.895 14.25 9.39 43.31 5.25
1004 2303 1.206072 GCTTCAAGTCTGCACGCAG 59.794 57.895 12.91 12.91 44.86 5.18
1005 2304 1.094650 TTGCTTCAAGTCTGCACGCA 61.095 50.000 0.00 0.00 36.37 5.24
1006 2305 0.385223 CTTGCTTCAAGTCTGCACGC 60.385 55.000 0.00 0.00 36.79 5.34
1007 2306 3.742290 CTTGCTTCAAGTCTGCACG 57.258 52.632 0.00 0.00 36.79 5.34
1015 2314 1.401931 CCGGCATCAACTTGCTTCAAG 60.402 52.381 5.13 5.13 45.85 3.02
1016 2315 0.597568 CCGGCATCAACTTGCTTCAA 59.402 50.000 0.00 0.00 42.38 2.69
1017 2316 1.243342 CCCGGCATCAACTTGCTTCA 61.243 55.000 0.00 0.00 42.38 3.02
1018 2317 1.508088 CCCGGCATCAACTTGCTTC 59.492 57.895 0.00 0.00 42.38 3.86
1019 2318 2.639327 GCCCGGCATCAACTTGCTT 61.639 57.895 3.91 0.00 42.38 3.91
1020 2319 3.064324 GCCCGGCATCAACTTGCT 61.064 61.111 3.91 0.00 42.38 3.91
1021 2320 4.133796 GGCCCGGCATCAACTTGC 62.134 66.667 12.58 0.00 42.01 4.01
1022 2321 1.978617 AAGGCCCGGCATCAACTTG 60.979 57.895 12.58 0.00 0.00 3.16
1023 2322 1.978617 CAAGGCCCGGCATCAACTT 60.979 57.895 12.58 1.65 0.00 2.66
1024 2323 2.361610 CAAGGCCCGGCATCAACT 60.362 61.111 12.58 0.00 0.00 3.16
1025 2324 3.451894 CCAAGGCCCGGCATCAAC 61.452 66.667 12.58 0.00 0.00 3.18
1026 2325 3.656280 TCCAAGGCCCGGCATCAA 61.656 61.111 12.58 0.00 0.00 2.57
1027 2326 4.424711 GTCCAAGGCCCGGCATCA 62.425 66.667 12.58 0.00 0.00 3.07
1028 2327 4.115199 AGTCCAAGGCCCGGCATC 62.115 66.667 12.58 0.00 0.00 3.91
1029 2328 4.115199 GAGTCCAAGGCCCGGCAT 62.115 66.667 12.58 0.00 0.00 4.40
1032 2331 4.760047 CACGAGTCCAAGGCCCGG 62.760 72.222 0.00 0.00 0.00 5.73
1033 2332 3.934391 GACACGAGTCCAAGGCCCG 62.934 68.421 0.00 0.00 38.89 6.13
1034 2333 2.047179 GACACGAGTCCAAGGCCC 60.047 66.667 0.00 0.00 38.89 5.80
1035 2334 0.670854 GAAGACACGAGTCCAAGGCC 60.671 60.000 9.50 0.00 46.15 5.19
1036 2335 0.318762 AGAAGACACGAGTCCAAGGC 59.681 55.000 9.50 0.00 46.15 4.35
1037 2336 1.337260 CCAGAAGACACGAGTCCAAGG 60.337 57.143 9.50 3.51 46.15 3.61
1038 2337 1.341531 ACCAGAAGACACGAGTCCAAG 59.658 52.381 9.50 0.00 46.15 3.61
1039 2338 1.340248 GACCAGAAGACACGAGTCCAA 59.660 52.381 9.50 0.00 46.15 3.53
1046 2345 2.509052 TTCACAGACCAGAAGACACG 57.491 50.000 0.00 0.00 0.00 4.49
1104 2403 3.066900 AGGATGATGTACTACGTGCTGTC 59.933 47.826 0.00 0.00 0.00 3.51
1126 2425 0.907704 ATCACGTGGGTAGGCTGGAA 60.908 55.000 17.00 0.00 0.00 3.53
1133 2432 2.100197 TCCTCTCAATCACGTGGGTAG 58.900 52.381 17.00 8.58 0.00 3.18
1148 2447 3.448934 TCTTTGCCTCTCTCAATCCTCT 58.551 45.455 0.00 0.00 0.00 3.69
1149 2448 3.902881 TCTTTGCCTCTCTCAATCCTC 57.097 47.619 0.00 0.00 0.00 3.71
1150 2449 5.605908 TCATATCTTTGCCTCTCTCAATCCT 59.394 40.000 0.00 0.00 0.00 3.24
1151 2450 5.862845 TCATATCTTTGCCTCTCTCAATCC 58.137 41.667 0.00 0.00 0.00 3.01
1152 2451 6.594937 GGATCATATCTTTGCCTCTCTCAATC 59.405 42.308 0.00 0.00 0.00 2.67
1153 2452 6.474630 GGATCATATCTTTGCCTCTCTCAAT 58.525 40.000 0.00 0.00 0.00 2.57
1154 2453 5.221803 GGGATCATATCTTTGCCTCTCTCAA 60.222 44.000 0.00 0.00 0.00 3.02
1155 2454 4.285517 GGGATCATATCTTTGCCTCTCTCA 59.714 45.833 0.00 0.00 0.00 3.27
1156 2455 4.620332 CGGGATCATATCTTTGCCTCTCTC 60.620 50.000 0.00 0.00 0.00 3.20
1157 2456 3.260380 CGGGATCATATCTTTGCCTCTCT 59.740 47.826 0.00 0.00 0.00 3.10
1181 2480 1.597742 GCAATGGCACGGATGTCTAT 58.402 50.000 0.00 0.00 40.72 1.98
1186 2485 2.802792 CTGGCAATGGCACGGATG 59.197 61.111 5.05 0.00 43.71 3.51
1224 2523 8.659491 TGATCAAATGTGAAAGAGAAATACTCG 58.341 33.333 0.00 0.00 42.84 4.18
1233 2532 5.578005 AGGCATGATCAAATGTGAAAGAG 57.422 39.130 0.00 0.00 37.30 2.85
1253 2552 2.806198 CAACCGCGCAATGCAAGG 60.806 61.111 8.75 13.23 46.97 3.61
1323 2627 7.476540 TTGAGTACTGCAAAGTTATCTAGGA 57.523 36.000 0.00 0.00 0.00 2.94
1324 2628 8.607459 CAATTGAGTACTGCAAAGTTATCTAGG 58.393 37.037 0.00 0.00 0.00 3.02
1325 2629 8.119226 GCAATTGAGTACTGCAAAGTTATCTAG 58.881 37.037 10.34 0.00 36.09 2.43
1326 2630 7.065803 GGCAATTGAGTACTGCAAAGTTATCTA 59.934 37.037 10.34 0.00 37.83 1.98
1327 2631 6.127897 GGCAATTGAGTACTGCAAAGTTATCT 60.128 38.462 10.34 0.00 37.83 1.98
1328 2632 6.030228 GGCAATTGAGTACTGCAAAGTTATC 58.970 40.000 10.34 0.00 37.83 1.75
1329 2633 5.476599 TGGCAATTGAGTACTGCAAAGTTAT 59.523 36.000 10.34 0.00 37.83 1.89
1330 2634 4.824537 TGGCAATTGAGTACTGCAAAGTTA 59.175 37.500 10.34 0.00 37.83 2.24
1331 2635 3.636300 TGGCAATTGAGTACTGCAAAGTT 59.364 39.130 10.34 0.00 37.83 2.66
1332 2636 3.004734 GTGGCAATTGAGTACTGCAAAGT 59.995 43.478 10.34 0.00 37.83 2.66
1333 2637 3.004629 TGTGGCAATTGAGTACTGCAAAG 59.995 43.478 10.34 3.81 37.83 2.77
1336 2640 2.268762 TGTGGCAATTGAGTACTGCA 57.731 45.000 10.34 0.00 37.83 4.41
1337 2641 3.855689 ATTGTGGCAATTGAGTACTGC 57.144 42.857 10.34 0.00 35.28 4.40
1338 2642 6.215121 TGAAAATTGTGGCAATTGAGTACTG 58.785 36.000 10.34 0.00 0.00 2.74
1339 2643 6.040842 ACTGAAAATTGTGGCAATTGAGTACT 59.959 34.615 10.34 0.00 0.00 2.73
1340 2644 6.215845 ACTGAAAATTGTGGCAATTGAGTAC 58.784 36.000 10.34 4.99 0.00 2.73
1342 2646 5.280654 ACTGAAAATTGTGGCAATTGAGT 57.719 34.783 10.34 7.68 0.00 3.41
1343 2647 4.687483 GGACTGAAAATTGTGGCAATTGAG 59.313 41.667 10.34 7.19 0.00 3.02
1345 2649 4.378774 TGGACTGAAAATTGTGGCAATTG 58.621 39.130 0.00 0.00 0.00 2.32
1346 2650 4.686191 TGGACTGAAAATTGTGGCAATT 57.314 36.364 0.00 1.68 0.00 2.32
1347 2651 4.895668 ATGGACTGAAAATTGTGGCAAT 57.104 36.364 0.00 0.00 0.00 3.56
1348 2652 4.686191 AATGGACTGAAAATTGTGGCAA 57.314 36.364 0.00 0.00 0.00 4.52
1349 2653 4.686191 AAATGGACTGAAAATTGTGGCA 57.314 36.364 0.00 0.00 0.00 4.92
1350 2654 5.526846 TCAAAAATGGACTGAAAATTGTGGC 59.473 36.000 0.00 0.00 0.00 5.01
1351 2655 7.551035 TTCAAAAATGGACTGAAAATTGTGG 57.449 32.000 0.00 0.00 0.00 4.17
1357 2661 8.923270 ACTCCTATTTCAAAAATGGACTGAAAA 58.077 29.630 1.04 0.00 41.14 2.29
1358 2662 8.477419 ACTCCTATTTCAAAAATGGACTGAAA 57.523 30.769 0.00 0.00 41.79 2.69
1359 2663 9.010029 GTACTCCTATTTCAAAAATGGACTGAA 57.990 33.333 0.00 0.00 0.00 3.02
1361 2665 7.393234 TGGTACTCCTATTTCAAAAATGGACTG 59.607 37.037 0.00 0.00 34.23 3.51
1363 2667 7.696992 TGGTACTCCTATTTCAAAAATGGAC 57.303 36.000 0.00 0.00 34.23 4.02
1365 2669 8.971073 AGAATGGTACTCCTATTTCAAAAATGG 58.029 33.333 0.00 0.00 34.23 3.16
1369 2673 9.807921 AGAAAGAATGGTACTCCTATTTCAAAA 57.192 29.630 12.52 0.00 34.23 2.44
1371 2675 9.231297 CAAGAAAGAATGGTACTCCTATTTCAA 57.769 33.333 12.52 0.00 34.23 2.69
1372 2676 8.383175 ACAAGAAAGAATGGTACTCCTATTTCA 58.617 33.333 12.52 0.00 34.23 2.69
1373 2677 8.794335 ACAAGAAAGAATGGTACTCCTATTTC 57.206 34.615 0.00 0.00 34.23 2.17
1377 2681 8.964772 GTAGTACAAGAAAGAATGGTACTCCTA 58.035 37.037 6.08 0.00 42.49 2.94
1378 2682 6.936968 AGTACAAGAAAGAATGGTACTCCT 57.063 37.500 0.00 0.00 40.25 3.69
1407 2863 5.911378 ACACCAAAATTGTGGCAATTTTT 57.089 30.435 22.30 11.77 43.00 1.94
1408 2864 5.911378 AACACCAAAATTGTGGCAATTTT 57.089 30.435 15.07 20.31 43.00 1.82
1409 2865 6.375455 TGTTAACACCAAAATTGTGGCAATTT 59.625 30.769 15.07 12.41 43.00 1.82
1410 2866 5.882557 TGTTAACACCAAAATTGTGGCAATT 59.117 32.000 15.07 8.92 43.00 2.32
1440 3221 1.304509 TGCATGCACCATGTACGTGG 61.305 55.000 29.02 29.02 43.10 4.94
1445 3226 2.114051 CGCCTGCATGCACCATGTA 61.114 57.895 18.46 0.00 43.10 2.29
1451 3232 4.107051 GACACCGCCTGCATGCAC 62.107 66.667 18.46 7.32 0.00 4.57
1479 3260 1.803922 CGCCGTTGTACATCGCTCA 60.804 57.895 18.69 0.00 0.00 4.26
1853 3634 1.301087 CACGCCGTTGACCTGGTTA 60.301 57.895 0.00 0.00 0.00 2.85
1919 3700 2.363795 TACCCCTCGAGGTGCCAG 60.364 66.667 29.25 13.79 41.42 4.85
2138 3919 1.300156 GAGGCGCATCTGCACGATA 60.300 57.895 16.00 0.00 42.21 2.92
2354 4135 2.802724 CCCGATCATGGCCACGGTA 61.803 63.158 25.69 6.23 43.22 4.02
2546 4327 1.066587 GACCTTCTGATCGAGGCCG 59.933 63.158 0.00 0.00 37.07 6.13
2815 4596 8.853077 TTGAATCATTCAAATAGACACTGTCT 57.147 30.769 16.00 16.00 45.94 3.41
2844 4625 5.469373 TTTGTCATCTGAAATTCGATCCG 57.531 39.130 0.00 0.00 0.00 4.18
2891 4672 5.880054 ATCCAAAACCTATCAAACTCGTG 57.120 39.130 0.00 0.00 0.00 4.35
3070 4851 2.283604 TAGCTGAGGCCGTGTCCA 60.284 61.111 0.00 0.00 39.73 4.02
3073 4854 2.657237 GTGTAGCTGAGGCCGTGT 59.343 61.111 0.00 0.00 39.73 4.49
3127 4908 2.031163 GCAAGCTGGACGGTGAGT 59.969 61.111 0.00 0.00 0.00 3.41
3181 4965 0.379669 CATGGCCAAGATGCTTCGTC 59.620 55.000 10.96 0.00 0.00 4.20
3366 5156 0.179094 AACGTGCACCTTCTCGAACA 60.179 50.000 12.15 0.00 0.00 3.18
3409 5199 3.140225 GACGTCGAGGCCCATCTCC 62.140 68.421 4.75 0.00 0.00 3.71
3515 5305 4.394712 GACCCCCAGCGTGACCAG 62.395 72.222 0.00 0.00 0.00 4.00
3564 5354 3.213206 TGACATCCATGGCTATTGTCC 57.787 47.619 22.87 12.57 36.54 4.02
3569 5359 2.092267 TGCTGTTGACATCCATGGCTAT 60.092 45.455 6.96 0.00 36.54 2.97
3588 5378 4.846779 TTCCAAACTATCCAACACTTGC 57.153 40.909 0.00 0.00 0.00 4.01
3605 5395 3.055240 GGCACCATGAAAATCCAATTCCA 60.055 43.478 0.00 0.00 0.00 3.53
3630 5420 0.532862 CACCTTTGCGGAGACAGTGT 60.533 55.000 0.00 0.00 36.31 3.55
3789 5582 8.562892 CATGGTTATGGATCAATCAAAGTAGAC 58.437 37.037 0.00 0.00 0.00 2.59
3803 5596 1.949525 GTGAAGCGCATGGTTATGGAT 59.050 47.619 11.47 0.00 35.57 3.41
3849 6068 4.497507 GCAAGTTTGTACAGGAAACCAGTC 60.498 45.833 5.49 0.00 34.42 3.51
3955 6174 1.588932 GATGGCTCGCATCGTTCGA 60.589 57.895 0.00 0.00 34.52 3.71
3958 6177 1.815421 GTGGATGGCTCGCATCGTT 60.815 57.895 0.00 0.00 0.00 3.85
3960 6179 2.969238 GGTGGATGGCTCGCATCG 60.969 66.667 0.00 0.00 0.00 3.84
4002 6221 1.798813 GACTTCGGACAAGCGAACAAT 59.201 47.619 0.00 0.00 0.00 2.71
4020 6239 1.966451 CTCCCCTGGTTTGCGTGAC 60.966 63.158 0.00 0.00 0.00 3.67
4049 6279 4.221422 CGTGATGGCGGTCCGGAT 62.221 66.667 14.38 0.00 34.14 4.18
4069 6299 2.063015 ATGGAACCAAGGTGTCGGCA 62.063 55.000 0.00 0.00 0.00 5.69
4088 6318 2.552155 CCACGTGGGAGATCTTTTTGGA 60.552 50.000 27.57 0.00 40.01 3.53
4107 6337 4.329545 GGAGCGGAGTTGTGGCCA 62.330 66.667 0.00 0.00 0.00 5.36
4130 6360 1.481363 TGTGGACCGGCATTAATACGA 59.519 47.619 0.00 0.00 0.00 3.43
4151 6381 0.468585 TAGTGACCAGTGGTGTCCGT 60.469 55.000 22.50 1.88 35.25 4.69
4199 6429 2.259818 CTGAGACGCGGCACTCTT 59.740 61.111 17.71 0.00 34.65 2.85
4378 6609 2.658064 GCTGCCACAGAGCTCCTCT 61.658 63.158 10.93 0.00 42.11 3.69
4454 6685 4.754667 GAGGAACCGCCGACACCC 62.755 72.222 0.00 0.00 43.43 4.61
4488 6719 3.411517 GCTTGCCCAGGCCCTCTA 61.412 66.667 6.14 0.00 41.09 2.43
4499 6730 3.499737 CATCCGACGTGGCTTGCC 61.500 66.667 4.43 4.43 37.80 4.52
4561 6792 5.120363 CGTCGATCTAGACTATTCGATCCAA 59.880 44.000 16.73 0.00 41.96 3.53
4572 6803 1.018148 CTGCACCGTCGATCTAGACT 58.982 55.000 0.00 0.00 38.90 3.24
4622 6853 2.708325 GCCACTTCCCTCTCCATCTAAT 59.292 50.000 0.00 0.00 0.00 1.73
4653 6891 2.787118 CCCCCTTCCTACCACAACT 58.213 57.895 0.00 0.00 0.00 3.16
4673 6911 5.886474 CCTTCATTTTTAGGAGAGTAACCCC 59.114 44.000 0.00 0.00 33.13 4.95
4679 6917 6.153510 GGCAAATCCTTCATTTTTAGGAGAGT 59.846 38.462 0.00 0.00 43.46 3.24
4706 6944 4.844655 AGGCAAAACCCTCTCTTCTTACTA 59.155 41.667 0.00 0.00 40.58 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.