Multiple sequence alignment - TraesCS4A01G170800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G170800 chr4A 100.000 3845 0 0 1 3845 430433868 430430024 0.000000e+00 7101.0
1 TraesCS4A01G170800 chr4A 90.104 576 49 6 1 570 319105968 319105395 0.000000e+00 741.0
2 TraesCS4A01G170800 chr4B 97.185 1208 30 4 947 2150 165308182 165306975 0.000000e+00 2039.0
3 TraesCS4A01G170800 chr4B 96.552 696 21 2 2462 3157 165306512 165305820 0.000000e+00 1149.0
4 TraesCS4A01G170800 chr4B 89.562 297 28 3 3550 3845 106783859 106784153 1.300000e-99 374.0
5 TraesCS4A01G170800 chr4B 86.280 328 24 10 3168 3486 165305491 165305176 1.710000e-88 337.0
6 TraesCS4A01G170800 chr4B 88.621 290 9 4 2150 2437 165306891 165306624 7.960000e-87 331.0
7 TraesCS4A01G170800 chr4B 82.609 299 46 3 569 865 165308701 165308407 3.810000e-65 259.0
8 TraesCS4A01G170800 chr4B 92.000 50 0 4 3509 3554 174064502 174064453 2.480000e-07 67.6
9 TraesCS4A01G170800 chr4D 96.793 1216 31 6 942 2150 132198785 132199999 0.000000e+00 2023.0
10 TraesCS4A01G170800 chr4D 93.814 1180 36 13 2150 3295 132200083 132201259 0.000000e+00 1740.0
11 TraesCS4A01G170800 chr4D 86.006 343 46 2 569 911 132196692 132197032 2.180000e-97 366.0
12 TraesCS4A01G170800 chr1A 90.799 576 46 5 1 571 133409585 133410158 0.000000e+00 763.0
13 TraesCS4A01G170800 chr1A 90.451 576 48 7 1 570 281666289 281666863 0.000000e+00 752.0
14 TraesCS4A01G170800 chr3A 90.592 574 49 5 1 570 467161725 467162297 0.000000e+00 756.0
15 TraesCS4A01G170800 chr3A 90.087 575 50 6 1 569 467330685 467331258 0.000000e+00 739.0
16 TraesCS4A01G170800 chr3A 89.948 577 51 6 1 570 187154944 187154368 0.000000e+00 737.0
17 TraesCS4A01G170800 chr7A 89.878 573 52 4 1 569 171114260 171114830 0.000000e+00 732.0
18 TraesCS4A01G170800 chr7A 84.737 190 20 4 3311 3492 503529171 503528983 8.490000e-42 182.0
19 TraesCS4A01G170800 chr7A 89.091 55 2 2 3494 3546 280826347 280826399 8.920000e-07 65.8
20 TraesCS4A01G170800 chr6D 89.619 578 51 6 1 570 407873624 407873048 0.000000e+00 726.0
21 TraesCS4A01G170800 chr6D 88.333 60 5 2 3507 3565 385470174 385470232 1.920000e-08 71.3
22 TraesCS4A01G170800 chr2D 89.792 578 44 12 1 570 483985392 483985962 0.000000e+00 726.0
23 TraesCS4A01G170800 chr2D 81.385 231 38 4 569 796 309939323 309939551 2.360000e-42 183.0
24 TraesCS4A01G170800 chr6A 86.387 191 17 4 3311 3492 45983633 45983823 2.340000e-47 200.0
25 TraesCS4A01G170800 chr6A 84.375 192 20 5 3311 3492 46121275 46121466 3.050000e-41 180.0
26 TraesCS4A01G170800 chr6A 84.375 192 20 5 3311 3492 46150281 46150472 3.050000e-41 180.0
27 TraesCS4A01G170800 chr7B 85.263 190 18 7 3311 3492 524776052 524776239 1.820000e-43 187.0
28 TraesCS4A01G170800 chr1D 85.263 190 18 4 3312 3492 489445907 489446095 1.820000e-43 187.0
29 TraesCS4A01G170800 chr6B 84.896 192 19 4 3311 3492 79345653 79345844 6.560000e-43 185.0
30 TraesCS4A01G170800 chr6B 84.699 183 18 5 3313 3486 79349414 79349595 1.420000e-39 174.0
31 TraesCS4A01G170800 chr6B 80.147 136 22 4 622 754 659569418 659569551 3.160000e-16 97.1
32 TraesCS4A01G170800 chr6B 77.444 133 17 11 3493 3618 346709893 346710019 2.480000e-07 67.6
33 TraesCS4A01G170800 chr7D 95.000 40 2 0 3510 3549 193213002 193213041 3.210000e-06 63.9
34 TraesCS4A01G170800 chr5D 76.119 134 20 9 3492 3618 506301974 506301846 4.150000e-05 60.2
35 TraesCS4A01G170800 chr5D 89.130 46 3 2 3588 3632 290395569 290395613 5.370000e-04 56.5
36 TraesCS4A01G170800 chr5B 89.583 48 3 2 3586 3632 331248855 331248901 4.150000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G170800 chr4A 430430024 430433868 3844 True 7101.000000 7101 100.000000 1 3845 1 chr4A.!!$R2 3844
1 TraesCS4A01G170800 chr4A 319105395 319105968 573 True 741.000000 741 90.104000 1 570 1 chr4A.!!$R1 569
2 TraesCS4A01G170800 chr4B 165305176 165308701 3525 True 823.000000 2039 90.249400 569 3486 5 chr4B.!!$R2 2917
3 TraesCS4A01G170800 chr4D 132196692 132201259 4567 False 1376.333333 2023 92.204333 569 3295 3 chr4D.!!$F1 2726
4 TraesCS4A01G170800 chr1A 133409585 133410158 573 False 763.000000 763 90.799000 1 571 1 chr1A.!!$F1 570
5 TraesCS4A01G170800 chr1A 281666289 281666863 574 False 752.000000 752 90.451000 1 570 1 chr1A.!!$F2 569
6 TraesCS4A01G170800 chr3A 467161725 467162297 572 False 756.000000 756 90.592000 1 570 1 chr3A.!!$F1 569
7 TraesCS4A01G170800 chr3A 467330685 467331258 573 False 739.000000 739 90.087000 1 569 1 chr3A.!!$F2 568
8 TraesCS4A01G170800 chr3A 187154368 187154944 576 True 737.000000 737 89.948000 1 570 1 chr3A.!!$R1 569
9 TraesCS4A01G170800 chr7A 171114260 171114830 570 False 732.000000 732 89.878000 1 569 1 chr7A.!!$F1 568
10 TraesCS4A01G170800 chr6D 407873048 407873624 576 True 726.000000 726 89.619000 1 570 1 chr6D.!!$R1 569
11 TraesCS4A01G170800 chr2D 483985392 483985962 570 False 726.000000 726 89.792000 1 570 1 chr2D.!!$F2 569

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
932 2738 0.027716 CGACTGTAGACGGTCCATCG 59.972 60.0 14.54 3.91 46.76 3.84 F
939 2745 0.323542 AGACGGTCCATCGTTCCTCT 60.324 55.0 4.14 0.00 43.96 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2037 3891 0.517316 CCAAGCTGGTAACGCTCAAC 59.483 55.0 0.00 0.0 43.79 3.18 R
2878 4911 1.163554 CACCAGCTGAGAAGAAAGGC 58.836 55.0 17.39 0.0 0.00 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
130 138 2.685380 CGGCCACCTTCTCCTCCT 60.685 66.667 2.24 0.00 0.00 3.69
236 247 0.108329 CCTCCGGTCATAGCGTTGTT 60.108 55.000 0.00 0.00 37.40 2.83
251 262 1.602377 GTTGTTGTGCTTAGGCGAAGT 59.398 47.619 9.14 0.00 42.25 3.01
276 287 1.875157 CGCGGATCACATCACCATCAT 60.875 52.381 0.00 0.00 0.00 2.45
304 315 2.117156 GCCGCCATGCTGACAGAAT 61.117 57.895 6.65 0.00 0.00 2.40
381 393 1.863662 GCTGAACTCGGAGGTGTCGA 61.864 60.000 10.23 0.00 35.24 4.20
438 451 1.065358 CGACTACATCAACCGCGTTT 58.935 50.000 4.92 0.00 0.00 3.60
488 501 1.245732 GTACGTGGACACACTCTCCT 58.754 55.000 0.00 0.00 45.50 3.69
494 507 1.181786 GGACACACTCTCCTCCTCTG 58.818 60.000 0.00 0.00 0.00 3.35
527 540 5.355630 GCATCTCCTAGATAGATCTTGCGTA 59.644 44.000 0.00 0.00 38.32 4.42
579 597 2.773527 CCCCAACAGGACAACCCCA 61.774 63.158 0.00 0.00 38.24 4.96
584 602 0.991355 AACAGGACAACCCCAGGTCA 60.991 55.000 0.00 0.00 33.12 4.02
600 618 0.250038 GTCAGACAGCTCAGGCAACA 60.250 55.000 0.00 0.00 41.70 3.33
618 636 3.340814 ACAAGCAGATCCAACTCGATT 57.659 42.857 0.00 0.00 0.00 3.34
619 637 3.679389 ACAAGCAGATCCAACTCGATTT 58.321 40.909 0.00 0.00 0.00 2.17
638 656 1.288127 GTACTGCGTCTTGGACCGT 59.712 57.895 0.00 0.00 0.00 4.83
686 704 1.880941 CCTAGAAGGGTAAGGGCAGT 58.119 55.000 0.00 0.00 0.00 4.40
750 769 4.250116 CCAATTTTTGGTTGTCCGATGA 57.750 40.909 0.00 0.00 45.93 2.92
815 938 6.892658 TTAATGTGTGCTAATTGAGGTGTT 57.107 33.333 0.00 0.00 0.00 3.32
818 941 3.064207 GTGTGCTAATTGAGGTGTTCGA 58.936 45.455 0.00 0.00 0.00 3.71
824 947 4.154195 GCTAATTGAGGTGTTCGATTGTGT 59.846 41.667 0.00 0.00 39.69 3.72
837 960 8.067784 GTGTTCGATTGTGTGAAGAGAAATTTA 58.932 33.333 0.00 0.00 0.00 1.40
841 964 8.495949 TCGATTGTGTGAAGAGAAATTTAAGAC 58.504 33.333 0.00 0.00 0.00 3.01
853 976 2.886862 TTTAAGACGTGTCCGGTGAA 57.113 45.000 0.00 0.00 38.78 3.18
864 987 2.202878 CGGTGAATGTCCGCGGAT 60.203 61.111 33.58 16.67 41.48 4.18
881 1004 2.199236 GGATAAATCCGAAACGCGTCT 58.801 47.619 14.44 0.00 37.19 4.18
882 1005 2.034001 GGATAAATCCGAAACGCGTCTG 60.034 50.000 14.44 5.13 37.19 3.51
883 1006 2.068837 TAAATCCGAAACGCGTCTGT 57.931 45.000 14.44 0.00 38.67 3.41
887 1010 2.660552 CGAAACGCGTCTGTGGGT 60.661 61.111 14.44 0.00 36.47 4.51
888 1011 1.372004 CGAAACGCGTCTGTGGGTA 60.372 57.895 14.44 0.00 34.25 3.69
896 1019 1.369625 CGTCTGTGGGTATTTGAGGC 58.630 55.000 0.00 0.00 0.00 4.70
915 2719 0.953471 CACGGGATTTGCCAAGTCGA 60.953 55.000 0.00 0.00 38.95 4.20
923 2729 2.433868 TTGCCAAGTCGACTGTAGAC 57.566 50.000 20.85 12.40 38.81 2.59
925 2731 0.456312 GCCAAGTCGACTGTAGACGG 60.456 60.000 20.85 13.44 42.97 4.79
930 2736 1.093159 GTCGACTGTAGACGGTCCAT 58.907 55.000 8.70 0.00 46.76 3.41
932 2738 0.027716 CGACTGTAGACGGTCCATCG 59.972 60.000 14.54 3.91 46.76 3.84
938 2744 1.065251 GTAGACGGTCCATCGTTCCTC 59.935 57.143 4.14 0.00 43.96 3.71
939 2745 0.323542 AGACGGTCCATCGTTCCTCT 60.324 55.000 4.14 0.00 43.96 3.69
940 2746 0.531200 GACGGTCCATCGTTCCTCTT 59.469 55.000 0.00 0.00 43.96 2.85
970 2817 1.683441 CTCCAAACCCTAGCCCGTT 59.317 57.895 0.00 0.00 0.00 4.44
1005 2852 1.069090 GCGGCGAGACATTATGGGA 59.931 57.895 12.98 0.00 0.00 4.37
1045 2892 3.082579 GCGGTCTCATTCCTCGCCT 62.083 63.158 0.00 0.00 40.44 5.52
1046 2893 1.517832 CGGTCTCATTCCTCGCCTT 59.482 57.895 0.00 0.00 0.00 4.35
1241 3088 5.351740 GCCGTCTCAGTTAAATTTCTTAGCT 59.648 40.000 0.00 0.00 0.00 3.32
1272 3119 4.018506 TGTGGGAATTCATCTAGGCTTTCA 60.019 41.667 7.93 0.00 0.00 2.69
1293 3140 6.389830 TCATTGCCTTCATTATTATTGCGT 57.610 33.333 0.00 0.00 0.00 5.24
1428 3276 1.110442 CTTTGGGACAGGCAACACAA 58.890 50.000 0.00 0.00 42.39 3.33
2037 3891 2.422479 CCATGGAAGACAGCATCAACTG 59.578 50.000 5.56 0.00 43.59 3.16
2255 4195 4.618927 CGGTCTTGGATTAACAGTTCCGTA 60.619 45.833 0.00 0.00 34.58 4.02
2332 4272 6.435428 GGTAGTGAACAAAAGTAACATGGTG 58.565 40.000 0.00 0.00 0.00 4.17
2388 4333 0.101399 CTCGTAGGCGATGCTGTTCT 59.899 55.000 0.00 0.00 46.80 3.01
2390 4335 1.202973 CGTAGGCGATGCTGTTCTCG 61.203 60.000 0.00 0.00 41.33 4.04
2500 4532 1.331756 GCGAATCATACTGGTTGCTGG 59.668 52.381 0.00 0.00 0.00 4.85
2835 4867 0.175989 GGTACCTAGCGAGCAAGCTT 59.824 55.000 11.13 0.00 46.80 3.74
2858 4891 7.441890 TTGAGTTGTGACTGTTGAAAGTTAA 57.558 32.000 0.00 0.00 35.88 2.01
3041 5074 1.375268 GCAGGAGCGCAGAAACTCT 60.375 57.895 11.47 0.00 33.29 3.24
3101 5134 2.713863 TGAAACGGGTGTAAACTGGT 57.286 45.000 0.00 0.00 0.00 4.00
3218 5588 2.283834 ACCAGGGGATGATGTAAACCA 58.716 47.619 0.00 0.00 0.00 3.67
3225 5595 3.315191 GGGATGATGTAAACCATGAACGG 59.685 47.826 0.00 0.00 32.56 4.44
3232 5602 1.526575 AAACCATGAACGGCTGGCAG 61.527 55.000 10.94 10.94 35.88 4.85
3233 5603 3.136123 CCATGAACGGCTGGCAGG 61.136 66.667 17.64 2.59 0.00 4.85
3266 5638 1.891150 AGATGGCACCTCTGCTTTTTG 59.109 47.619 0.00 0.00 43.66 2.44
3267 5639 0.319405 ATGGCACCTCTGCTTTTTGC 59.681 50.000 0.00 0.00 43.66 3.68
3297 5669 2.443887 TCCTGCATGCAAGCTTTTTC 57.556 45.000 22.88 0.00 34.99 2.29
3298 5670 1.965643 TCCTGCATGCAAGCTTTTTCT 59.034 42.857 22.88 0.00 34.99 2.52
3299 5671 3.156293 TCCTGCATGCAAGCTTTTTCTA 58.844 40.909 22.88 0.00 34.99 2.10
3300 5672 3.765511 TCCTGCATGCAAGCTTTTTCTAT 59.234 39.130 22.88 0.00 34.99 1.98
3303 5675 5.517770 CCTGCATGCAAGCTTTTTCTATAAC 59.482 40.000 22.88 0.00 34.99 1.89
3342 5714 6.876789 TCTCTTTATTTACGATTCAACCAGCA 59.123 34.615 0.00 0.00 0.00 4.41
3363 5735 8.986847 CCAGCATTACATCACTTAATAAGAGAG 58.013 37.037 7.06 2.08 31.69 3.20
3388 5760 1.227118 GCTCGCTAGGAGGCTCAAC 60.227 63.158 17.69 0.00 43.36 3.18
3436 5811 4.812626 GGCCAAATTTGCTAATTCATGAGG 59.187 41.667 12.92 5.84 32.85 3.86
3456 5836 6.975949 TGAGGAATTAGTCTCTCTAGGACTT 58.024 40.000 5.59 0.00 42.96 3.01
3457 5837 7.415086 TGAGGAATTAGTCTCTCTAGGACTTT 58.585 38.462 5.59 0.00 42.96 2.66
3465 5845 5.012561 AGTCTCTCTAGGACTTTGCACAAAT 59.987 40.000 0.00 0.00 40.65 2.32
3466 5846 5.703130 GTCTCTCTAGGACTTTGCACAAATT 59.297 40.000 0.00 0.00 0.00 1.82
3481 5861 6.245408 TGCACAAATTAGGTATGAGGAAAGT 58.755 36.000 0.00 0.00 0.00 2.66
3486 5866 7.397192 ACAAATTAGGTATGAGGAAAGTTGCAT 59.603 33.333 0.00 0.00 30.58 3.96
3487 5867 6.949352 ATTAGGTATGAGGAAAGTTGCATG 57.051 37.500 0.00 0.00 0.00 4.06
3488 5868 3.019564 AGGTATGAGGAAAGTTGCATGC 58.980 45.455 11.82 11.82 0.00 4.06
3489 5869 2.223340 GGTATGAGGAAAGTTGCATGCG 60.223 50.000 14.09 0.00 0.00 4.73
3490 5870 1.825090 ATGAGGAAAGTTGCATGCGA 58.175 45.000 14.09 8.74 0.00 5.10
3491 5871 1.825090 TGAGGAAAGTTGCATGCGAT 58.175 45.000 11.68 0.00 0.00 4.58
3492 5872 2.161855 TGAGGAAAGTTGCATGCGATT 58.838 42.857 11.68 3.53 0.00 3.34
3493 5873 2.557924 TGAGGAAAGTTGCATGCGATTT 59.442 40.909 11.68 10.63 0.00 2.17
3494 5874 3.005684 TGAGGAAAGTTGCATGCGATTTT 59.994 39.130 23.99 23.99 0.00 1.82
3495 5875 3.989817 GAGGAAAGTTGCATGCGATTTTT 59.010 39.130 24.40 20.06 0.00 1.94
3518 5898 5.689383 TTTTGACTTGCTGACCATAGAAC 57.311 39.130 0.00 0.00 0.00 3.01
3519 5899 4.350368 TTGACTTGCTGACCATAGAACA 57.650 40.909 0.00 0.00 0.00 3.18
3520 5900 4.350368 TGACTTGCTGACCATAGAACAA 57.650 40.909 0.00 0.00 0.00 2.83
3521 5901 4.910195 TGACTTGCTGACCATAGAACAAT 58.090 39.130 0.00 0.00 0.00 2.71
3522 5902 4.937620 TGACTTGCTGACCATAGAACAATC 59.062 41.667 0.00 0.00 0.00 2.67
3523 5903 4.910195 ACTTGCTGACCATAGAACAATCA 58.090 39.130 0.00 0.00 0.00 2.57
3524 5904 5.503927 ACTTGCTGACCATAGAACAATCAT 58.496 37.500 0.00 0.00 0.00 2.45
3525 5905 5.948162 ACTTGCTGACCATAGAACAATCATT 59.052 36.000 0.00 0.00 0.00 2.57
3526 5906 6.094603 ACTTGCTGACCATAGAACAATCATTC 59.905 38.462 0.00 0.00 0.00 2.67
3527 5907 5.748402 TGCTGACCATAGAACAATCATTCT 58.252 37.500 0.00 0.00 41.81 2.40
3528 5908 6.888105 TGCTGACCATAGAACAATCATTCTA 58.112 36.000 0.00 0.00 43.57 2.10
3574 5954 8.812147 AAAAAGTTATTTACAACAAGGCTAGC 57.188 30.769 6.04 6.04 0.00 3.42
3575 5955 7.519032 AAAGTTATTTACAACAAGGCTAGCA 57.481 32.000 18.24 0.00 0.00 3.49
3576 5956 7.519032 AAGTTATTTACAACAAGGCTAGCAA 57.481 32.000 18.24 0.00 0.00 3.91
3577 5957 7.145932 AGTTATTTACAACAAGGCTAGCAAG 57.854 36.000 18.24 7.90 0.00 4.01
3590 5970 3.820777 CTAGCAAGCAGAAGTTCAACC 57.179 47.619 5.50 0.00 0.00 3.77
3591 5971 2.057137 AGCAAGCAGAAGTTCAACCA 57.943 45.000 5.50 0.00 0.00 3.67
3592 5972 2.378038 AGCAAGCAGAAGTTCAACCAA 58.622 42.857 5.50 0.00 0.00 3.67
3593 5973 2.961062 AGCAAGCAGAAGTTCAACCAAT 59.039 40.909 5.50 0.00 0.00 3.16
3594 5974 4.144297 AGCAAGCAGAAGTTCAACCAATA 58.856 39.130 5.50 0.00 0.00 1.90
3595 5975 4.022849 AGCAAGCAGAAGTTCAACCAATAC 60.023 41.667 5.50 0.00 0.00 1.89
3596 5976 4.798574 CAAGCAGAAGTTCAACCAATACC 58.201 43.478 5.50 0.00 0.00 2.73
3597 5977 4.098914 AGCAGAAGTTCAACCAATACCA 57.901 40.909 5.50 0.00 0.00 3.25
3598 5978 4.074970 AGCAGAAGTTCAACCAATACCAG 58.925 43.478 5.50 0.00 0.00 4.00
3599 5979 3.366374 GCAGAAGTTCAACCAATACCAGC 60.366 47.826 5.50 0.00 0.00 4.85
3600 5980 4.074970 CAGAAGTTCAACCAATACCAGCT 58.925 43.478 5.50 0.00 0.00 4.24
3601 5981 4.154918 CAGAAGTTCAACCAATACCAGCTC 59.845 45.833 5.50 0.00 0.00 4.09
3602 5982 4.042187 AGAAGTTCAACCAATACCAGCTCT 59.958 41.667 5.50 0.00 0.00 4.09
3603 5983 5.248477 AGAAGTTCAACCAATACCAGCTCTA 59.752 40.000 5.50 0.00 0.00 2.43
3604 5984 5.091261 AGTTCAACCAATACCAGCTCTAG 57.909 43.478 0.00 0.00 0.00 2.43
3605 5985 4.080863 AGTTCAACCAATACCAGCTCTAGG 60.081 45.833 0.00 0.00 0.00 3.02
3606 5986 3.719871 TCAACCAATACCAGCTCTAGGA 58.280 45.455 0.00 0.00 0.00 2.94
3607 5987 4.101114 TCAACCAATACCAGCTCTAGGAA 58.899 43.478 0.00 0.00 0.00 3.36
3608 5988 4.534500 TCAACCAATACCAGCTCTAGGAAA 59.466 41.667 0.00 0.00 0.00 3.13
3609 5989 4.489306 ACCAATACCAGCTCTAGGAAAC 57.511 45.455 0.00 0.00 0.00 2.78
3610 5990 3.844211 ACCAATACCAGCTCTAGGAAACA 59.156 43.478 0.00 0.00 0.00 2.83
3611 5991 4.475016 ACCAATACCAGCTCTAGGAAACAT 59.525 41.667 0.00 0.00 0.00 2.71
3612 5992 5.059833 CCAATACCAGCTCTAGGAAACATC 58.940 45.833 0.00 0.00 0.00 3.06
3613 5993 5.396772 CCAATACCAGCTCTAGGAAACATCA 60.397 44.000 0.00 0.00 0.00 3.07
3614 5994 6.294473 CAATACCAGCTCTAGGAAACATCAT 58.706 40.000 0.00 0.00 0.00 2.45
3615 5995 7.445121 CAATACCAGCTCTAGGAAACATCATA 58.555 38.462 0.00 0.00 0.00 2.15
3616 5996 7.805083 ATACCAGCTCTAGGAAACATCATAT 57.195 36.000 0.00 0.00 0.00 1.78
3617 5997 8.901472 ATACCAGCTCTAGGAAACATCATATA 57.099 34.615 0.00 0.00 0.00 0.86
3618 5998 7.238486 ACCAGCTCTAGGAAACATCATATAG 57.762 40.000 0.00 0.00 0.00 1.31
3619 5999 6.105333 CCAGCTCTAGGAAACATCATATAGC 58.895 44.000 0.00 1.23 0.00 2.97
3620 6000 6.295518 CCAGCTCTAGGAAACATCATATAGCA 60.296 42.308 9.48 0.00 31.48 3.49
3621 6001 7.329499 CAGCTCTAGGAAACATCATATAGCAT 58.671 38.462 9.48 0.00 31.48 3.79
3622 6002 8.473219 CAGCTCTAGGAAACATCATATAGCATA 58.527 37.037 9.48 0.00 31.48 3.14
3623 6003 9.040259 AGCTCTAGGAAACATCATATAGCATAA 57.960 33.333 9.48 0.00 31.48 1.90
3624 6004 9.658799 GCTCTAGGAAACATCATATAGCATAAA 57.341 33.333 3.89 0.00 30.15 1.40
3649 6029 9.628500 AAATTAAAGAAAACTATCTATCCGGCT 57.372 29.630 0.00 0.00 0.00 5.52
3650 6030 8.834749 ATTAAAGAAAACTATCTATCCGGCTC 57.165 34.615 0.00 0.00 0.00 4.70
3651 6031 6.487299 AAAGAAAACTATCTATCCGGCTCT 57.513 37.500 0.00 0.00 0.00 4.09
3652 6032 5.461032 AGAAAACTATCTATCCGGCTCTG 57.539 43.478 0.00 0.00 0.00 3.35
3653 6033 5.141182 AGAAAACTATCTATCCGGCTCTGA 58.859 41.667 0.00 0.00 0.00 3.27
3654 6034 5.598830 AGAAAACTATCTATCCGGCTCTGAA 59.401 40.000 0.00 0.00 0.00 3.02
3655 6035 6.268847 AGAAAACTATCTATCCGGCTCTGAAT 59.731 38.462 0.00 0.00 0.00 2.57
3656 6036 5.652994 AACTATCTATCCGGCTCTGAATC 57.347 43.478 0.00 0.00 0.00 2.52
3657 6037 4.929479 ACTATCTATCCGGCTCTGAATCT 58.071 43.478 0.00 0.00 0.00 2.40
3658 6038 5.329399 ACTATCTATCCGGCTCTGAATCTT 58.671 41.667 0.00 0.00 0.00 2.40
3659 6039 4.533919 ATCTATCCGGCTCTGAATCTTG 57.466 45.455 0.00 0.00 0.00 3.02
3660 6040 3.300388 TCTATCCGGCTCTGAATCTTGT 58.700 45.455 0.00 0.00 0.00 3.16
3661 6041 3.706594 TCTATCCGGCTCTGAATCTTGTT 59.293 43.478 0.00 0.00 0.00 2.83
3662 6042 2.099141 TCCGGCTCTGAATCTTGTTG 57.901 50.000 0.00 0.00 0.00 3.33
3663 6043 1.089920 CCGGCTCTGAATCTTGTTGG 58.910 55.000 0.00 0.00 0.00 3.77
3664 6044 0.449388 CGGCTCTGAATCTTGTTGGC 59.551 55.000 0.00 0.00 0.00 4.52
3665 6045 0.813821 GGCTCTGAATCTTGTTGGCC 59.186 55.000 0.00 0.00 0.00 5.36
3666 6046 1.615384 GGCTCTGAATCTTGTTGGCCT 60.615 52.381 3.32 0.00 35.92 5.19
3667 6047 2.165998 GCTCTGAATCTTGTTGGCCTT 58.834 47.619 3.32 0.00 0.00 4.35
3668 6048 2.094854 GCTCTGAATCTTGTTGGCCTTG 60.095 50.000 3.32 0.00 0.00 3.61
3669 6049 2.490903 CTCTGAATCTTGTTGGCCTTGG 59.509 50.000 3.32 0.00 0.00 3.61
3670 6050 2.108075 TCTGAATCTTGTTGGCCTTGGA 59.892 45.455 3.32 0.00 0.00 3.53
3671 6051 2.229784 CTGAATCTTGTTGGCCTTGGAC 59.770 50.000 3.32 0.00 0.00 4.02
3672 6052 2.238521 GAATCTTGTTGGCCTTGGACA 58.761 47.619 3.32 0.59 0.00 4.02
3673 6053 2.610438 ATCTTGTTGGCCTTGGACAT 57.390 45.000 3.32 0.00 0.00 3.06
3674 6054 2.380064 TCTTGTTGGCCTTGGACATT 57.620 45.000 3.32 0.00 0.00 2.71
3675 6055 2.676748 TCTTGTTGGCCTTGGACATTT 58.323 42.857 3.32 0.00 0.00 2.32
3676 6056 3.037549 TCTTGTTGGCCTTGGACATTTT 58.962 40.909 3.32 0.00 0.00 1.82
3677 6057 4.219115 TCTTGTTGGCCTTGGACATTTTA 58.781 39.130 3.32 0.00 0.00 1.52
3678 6058 4.280677 TCTTGTTGGCCTTGGACATTTTAG 59.719 41.667 3.32 0.00 0.00 1.85
3679 6059 2.298729 TGTTGGCCTTGGACATTTTAGC 59.701 45.455 3.32 0.00 0.00 3.09
3680 6060 2.562738 GTTGGCCTTGGACATTTTAGCT 59.437 45.455 3.32 0.00 0.00 3.32
3681 6061 2.446435 TGGCCTTGGACATTTTAGCTC 58.554 47.619 3.32 0.00 0.00 4.09
3682 6062 2.041620 TGGCCTTGGACATTTTAGCTCT 59.958 45.455 3.32 0.00 0.00 4.09
3683 6063 2.424956 GGCCTTGGACATTTTAGCTCTG 59.575 50.000 0.00 0.00 0.00 3.35
3684 6064 3.084786 GCCTTGGACATTTTAGCTCTGT 58.915 45.455 0.00 0.00 0.00 3.41
3685 6065 4.261801 GCCTTGGACATTTTAGCTCTGTA 58.738 43.478 0.00 0.00 0.00 2.74
3686 6066 4.884164 GCCTTGGACATTTTAGCTCTGTAT 59.116 41.667 0.00 0.00 0.00 2.29
3687 6067 5.358160 GCCTTGGACATTTTAGCTCTGTATT 59.642 40.000 0.00 0.00 0.00 1.89
3688 6068 6.678900 GCCTTGGACATTTTAGCTCTGTATTG 60.679 42.308 0.00 0.00 0.00 1.90
3689 6069 6.599244 CCTTGGACATTTTAGCTCTGTATTGA 59.401 38.462 0.00 0.00 0.00 2.57
3690 6070 7.201679 CCTTGGACATTTTAGCTCTGTATTGAG 60.202 40.741 0.00 0.00 37.16 3.02
3701 6081 5.518848 CTCTGTATTGAGCTCTGATCAGT 57.481 43.478 21.92 3.10 0.00 3.41
3702 6082 5.512753 TCTGTATTGAGCTCTGATCAGTC 57.487 43.478 21.92 13.01 0.00 3.51
3703 6083 4.340666 TCTGTATTGAGCTCTGATCAGTCC 59.659 45.833 21.92 13.71 0.00 3.85
3704 6084 4.285020 TGTATTGAGCTCTGATCAGTCCT 58.715 43.478 21.92 17.86 0.00 3.85
3705 6085 4.713814 TGTATTGAGCTCTGATCAGTCCTT 59.286 41.667 21.92 7.00 0.00 3.36
3706 6086 3.883830 TTGAGCTCTGATCAGTCCTTC 57.116 47.619 21.92 14.99 0.00 3.46
3707 6087 2.106566 TGAGCTCTGATCAGTCCTTCC 58.893 52.381 21.92 9.13 0.00 3.46
3708 6088 1.412343 GAGCTCTGATCAGTCCTTCCC 59.588 57.143 21.92 5.08 0.00 3.97
3709 6089 0.103937 GCTCTGATCAGTCCTTCCCG 59.896 60.000 21.92 3.80 0.00 5.14
3710 6090 0.103937 CTCTGATCAGTCCTTCCCGC 59.896 60.000 21.92 0.00 0.00 6.13
3711 6091 0.614697 TCTGATCAGTCCTTCCCGCA 60.615 55.000 21.92 0.00 0.00 5.69
3712 6092 0.467384 CTGATCAGTCCTTCCCGCAT 59.533 55.000 14.95 0.00 0.00 4.73
3713 6093 0.178767 TGATCAGTCCTTCCCGCATG 59.821 55.000 0.00 0.00 0.00 4.06
3714 6094 0.179000 GATCAGTCCTTCCCGCATGT 59.821 55.000 0.00 0.00 0.00 3.21
3715 6095 0.107508 ATCAGTCCTTCCCGCATGTG 60.108 55.000 0.00 0.00 0.00 3.21
3716 6096 1.746615 CAGTCCTTCCCGCATGTGG 60.747 63.158 18.88 18.88 0.00 4.17
3717 6097 2.224159 AGTCCTTCCCGCATGTGGT 61.224 57.895 23.44 0.22 0.00 4.16
3718 6098 0.907704 AGTCCTTCCCGCATGTGGTA 60.908 55.000 23.44 5.35 0.00 3.25
3719 6099 0.743345 GTCCTTCCCGCATGTGGTAC 60.743 60.000 23.44 9.77 0.00 3.34
3720 6100 0.907704 TCCTTCCCGCATGTGGTACT 60.908 55.000 23.44 0.00 0.00 2.73
3721 6101 0.035439 CCTTCCCGCATGTGGTACTT 60.035 55.000 23.44 0.00 0.00 2.24
3722 6102 1.369625 CTTCCCGCATGTGGTACTTC 58.630 55.000 23.44 0.00 0.00 3.01
3723 6103 0.035820 TTCCCGCATGTGGTACTTCC 60.036 55.000 23.44 0.00 0.00 3.46
3724 6104 1.195442 TCCCGCATGTGGTACTTCCA 61.195 55.000 23.44 0.00 45.01 3.53
3742 6122 1.236628 CAGCCTTGGATATGAGCAGC 58.763 55.000 0.00 0.00 0.00 5.25
3743 6123 0.841961 AGCCTTGGATATGAGCAGCA 59.158 50.000 0.00 0.00 0.00 4.41
3744 6124 1.202782 AGCCTTGGATATGAGCAGCAG 60.203 52.381 0.00 0.00 0.00 4.24
3745 6125 1.236628 CCTTGGATATGAGCAGCAGC 58.763 55.000 0.00 0.00 42.56 5.25
3756 6136 2.924185 GCAGCAGCTTGTCTGAAGA 58.076 52.632 10.60 0.00 45.72 2.87
3757 6137 1.451067 GCAGCAGCTTGTCTGAAGAT 58.549 50.000 10.60 0.00 45.72 2.40
3758 6138 1.397692 GCAGCAGCTTGTCTGAAGATC 59.602 52.381 10.60 0.00 45.72 2.75
3759 6139 2.936114 GCAGCAGCTTGTCTGAAGATCT 60.936 50.000 10.60 0.00 45.72 2.75
3760 6140 3.336468 CAGCAGCTTGTCTGAAGATCTT 58.664 45.455 7.95 7.95 45.72 2.40
3761 6141 3.125487 CAGCAGCTTGTCTGAAGATCTTG 59.875 47.826 14.00 0.00 45.72 3.02
3762 6142 3.072944 GCAGCTTGTCTGAAGATCTTGT 58.927 45.455 14.00 0.00 45.72 3.16
3763 6143 3.124976 GCAGCTTGTCTGAAGATCTTGTC 59.875 47.826 14.00 0.00 45.72 3.18
3764 6144 4.313282 CAGCTTGTCTGAAGATCTTGTCA 58.687 43.478 14.00 4.70 45.72 3.58
3765 6145 4.936411 CAGCTTGTCTGAAGATCTTGTCAT 59.064 41.667 14.00 0.00 45.72 3.06
3766 6146 5.411977 CAGCTTGTCTGAAGATCTTGTCATT 59.588 40.000 14.00 0.00 45.72 2.57
3767 6147 5.411977 AGCTTGTCTGAAGATCTTGTCATTG 59.588 40.000 14.00 0.00 0.00 2.82
3768 6148 5.618056 TTGTCTGAAGATCTTGTCATTGC 57.382 39.130 14.00 0.00 0.00 3.56
3769 6149 3.681417 TGTCTGAAGATCTTGTCATTGCG 59.319 43.478 14.00 0.00 0.00 4.85
3770 6150 2.674852 TCTGAAGATCTTGTCATTGCGC 59.325 45.455 14.00 0.00 0.00 6.09
3771 6151 2.417586 CTGAAGATCTTGTCATTGCGCA 59.582 45.455 14.00 5.66 0.00 6.09
3772 6152 2.160219 TGAAGATCTTGTCATTGCGCAC 59.840 45.455 11.12 0.00 0.00 5.34
3773 6153 1.812235 AGATCTTGTCATTGCGCACA 58.188 45.000 11.12 0.58 0.00 4.57
3774 6154 1.466167 AGATCTTGTCATTGCGCACAC 59.534 47.619 11.12 8.11 0.00 3.82
3775 6155 1.197492 GATCTTGTCATTGCGCACACA 59.803 47.619 11.12 11.09 0.00 3.72
3776 6156 0.307453 TCTTGTCATTGCGCACACAC 59.693 50.000 11.12 7.27 0.00 3.82
3777 6157 0.661187 CTTGTCATTGCGCACACACC 60.661 55.000 11.12 0.00 0.00 4.16
3778 6158 1.379642 TTGTCATTGCGCACACACCA 61.380 50.000 11.12 0.00 0.00 4.17
3779 6159 1.358402 GTCATTGCGCACACACCAA 59.642 52.632 11.12 0.00 0.00 3.67
3780 6160 0.248825 GTCATTGCGCACACACCAAA 60.249 50.000 11.12 0.00 0.00 3.28
3781 6161 0.672889 TCATTGCGCACACACCAAAT 59.327 45.000 11.12 0.00 0.00 2.32
3782 6162 0.785378 CATTGCGCACACACCAAATG 59.215 50.000 11.12 4.55 0.00 2.32
3783 6163 0.945265 ATTGCGCACACACCAAATGC 60.945 50.000 11.12 0.00 35.96 3.56
3784 6164 2.734346 GCGCACACACCAAATGCC 60.734 61.111 0.30 0.00 35.91 4.40
3785 6165 2.049248 CGCACACACCAAATGCCC 60.049 61.111 0.00 0.00 35.91 5.36
3786 6166 2.343387 GCACACACCAAATGCCCC 59.657 61.111 0.00 0.00 33.06 5.80
3787 6167 2.506061 GCACACACCAAATGCCCCA 61.506 57.895 0.00 0.00 33.06 4.96
3788 6168 2.037620 GCACACACCAAATGCCCCAA 62.038 55.000 0.00 0.00 33.06 4.12
3789 6169 0.249826 CACACACCAAATGCCCCAAC 60.250 55.000 0.00 0.00 0.00 3.77
3790 6170 0.398381 ACACACCAAATGCCCCAACT 60.398 50.000 0.00 0.00 0.00 3.16
3791 6171 0.033781 CACACCAAATGCCCCAACTG 59.966 55.000 0.00 0.00 0.00 3.16
3792 6172 1.004679 CACCAAATGCCCCAACTGC 60.005 57.895 0.00 0.00 0.00 4.40
3793 6173 1.152269 ACCAAATGCCCCAACTGCT 60.152 52.632 0.00 0.00 0.00 4.24
3794 6174 0.763986 ACCAAATGCCCCAACTGCTT 60.764 50.000 0.00 0.00 0.00 3.91
3795 6175 0.320946 CCAAATGCCCCAACTGCTTG 60.321 55.000 0.00 0.00 0.00 4.01
3796 6176 0.952010 CAAATGCCCCAACTGCTTGC 60.952 55.000 0.00 0.00 0.00 4.01
3797 6177 2.115734 AAATGCCCCAACTGCTTGCC 62.116 55.000 0.00 0.00 0.00 4.52
3798 6178 3.831727 ATGCCCCAACTGCTTGCCA 62.832 57.895 0.00 0.00 0.00 4.92
3799 6179 3.233231 GCCCCAACTGCTTGCCAA 61.233 61.111 0.00 0.00 0.00 4.52
3800 6180 2.586293 GCCCCAACTGCTTGCCAAT 61.586 57.895 0.00 0.00 0.00 3.16
3801 6181 1.257055 GCCCCAACTGCTTGCCAATA 61.257 55.000 0.00 0.00 0.00 1.90
3802 6182 1.488390 CCCCAACTGCTTGCCAATAT 58.512 50.000 0.00 0.00 0.00 1.28
3803 6183 1.137479 CCCCAACTGCTTGCCAATATG 59.863 52.381 0.00 0.00 0.00 1.78
3804 6184 2.101783 CCCAACTGCTTGCCAATATGA 58.898 47.619 0.00 0.00 0.00 2.15
3805 6185 2.696707 CCCAACTGCTTGCCAATATGAT 59.303 45.455 0.00 0.00 0.00 2.45
3806 6186 3.890756 CCCAACTGCTTGCCAATATGATA 59.109 43.478 0.00 0.00 0.00 2.15
3807 6187 4.525487 CCCAACTGCTTGCCAATATGATAT 59.475 41.667 0.00 0.00 0.00 1.63
3808 6188 5.336213 CCCAACTGCTTGCCAATATGATATC 60.336 44.000 0.00 0.00 0.00 1.63
3809 6189 5.475909 CCAACTGCTTGCCAATATGATATCT 59.524 40.000 3.98 0.00 0.00 1.98
3810 6190 6.656270 CCAACTGCTTGCCAATATGATATCTA 59.344 38.462 3.98 0.00 0.00 1.98
3811 6191 7.148289 CCAACTGCTTGCCAATATGATATCTAG 60.148 40.741 3.98 0.00 0.00 2.43
3812 6192 7.013823 ACTGCTTGCCAATATGATATCTAGT 57.986 36.000 3.98 0.00 0.00 2.57
3813 6193 6.877855 ACTGCTTGCCAATATGATATCTAGTG 59.122 38.462 3.98 3.95 0.00 2.74
3814 6194 5.645067 TGCTTGCCAATATGATATCTAGTGC 59.355 40.000 3.98 0.60 0.00 4.40
3815 6195 5.645067 GCTTGCCAATATGATATCTAGTGCA 59.355 40.000 3.98 3.13 0.00 4.57
3816 6196 6.149973 GCTTGCCAATATGATATCTAGTGCAA 59.850 38.462 3.98 10.07 0.00 4.08
3817 6197 7.148120 GCTTGCCAATATGATATCTAGTGCAAT 60.148 37.037 3.98 0.00 0.00 3.56
3818 6198 7.854557 TGCCAATATGATATCTAGTGCAATC 57.145 36.000 3.98 0.00 0.00 2.67
3819 6199 6.825213 TGCCAATATGATATCTAGTGCAATCC 59.175 38.462 3.98 0.00 0.00 3.01
3820 6200 6.261826 GCCAATATGATATCTAGTGCAATCCC 59.738 42.308 3.98 0.00 0.00 3.85
3821 6201 6.481313 CCAATATGATATCTAGTGCAATCCCG 59.519 42.308 3.98 0.00 0.00 5.14
3822 6202 3.319137 TGATATCTAGTGCAATCCCGC 57.681 47.619 3.98 0.00 0.00 6.13
3823 6203 2.263077 GATATCTAGTGCAATCCCGCG 58.737 52.381 0.00 0.00 33.35 6.46
3824 6204 1.324383 TATCTAGTGCAATCCCGCGA 58.676 50.000 8.23 0.00 33.35 5.87
3825 6205 0.032678 ATCTAGTGCAATCCCGCGAG 59.967 55.000 8.23 0.00 33.35 5.03
3843 6223 6.525121 CGCGAGGAAATTCATTTATAGTCA 57.475 37.500 0.00 0.00 0.00 3.41
3844 6224 7.121974 CGCGAGGAAATTCATTTATAGTCAT 57.878 36.000 0.00 0.00 0.00 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
118 126 4.635558 ATAAAGGAGAGGAGGAGAAGGT 57.364 45.455 0.00 0.00 0.00 3.50
122 130 5.281089 CCCGTATATAAAGGAGAGGAGGAGA 60.281 48.000 7.00 0.00 0.00 3.71
130 138 3.513517 CCACCCCCGTATATAAAGGAGA 58.486 50.000 7.00 0.00 0.00 3.71
155 165 1.560505 ATTGATGTGCCTTTGGGGTC 58.439 50.000 0.00 0.00 37.43 4.46
202 213 1.264295 GGAGGAGTAAACCGTGGAGT 58.736 55.000 0.00 0.00 34.73 3.85
236 247 0.037326 CAGGACTTCGCCTAAGCACA 60.037 55.000 0.00 0.00 38.93 4.57
290 301 1.064166 AGGGGAATTCTGTCAGCATGG 60.064 52.381 5.23 0.00 36.16 3.66
304 315 2.683933 GCAGAGGGTCGAGGGGAA 60.684 66.667 0.00 0.00 0.00 3.97
381 393 2.359900 ACCGATCTAGTACCGAACGTT 58.640 47.619 0.00 0.00 0.00 3.99
411 424 3.181517 CGGTTGATGTAGTCGAACGTCTA 60.182 47.826 10.09 1.28 44.71 2.59
438 451 3.531538 CCGAAAGCAGAAGCATTAGGTA 58.468 45.455 0.00 0.00 45.49 3.08
488 501 0.394762 GATGCATGGCAACCAGAGGA 60.395 55.000 2.46 0.00 43.62 3.71
494 507 1.141657 TCTAGGAGATGCATGGCAACC 59.858 52.381 2.46 0.00 43.62 3.77
558 576 0.539669 GGGTTGTCCTGTTGGGGAAG 60.540 60.000 0.00 0.00 37.10 3.46
579 597 1.123861 TTGCCTGAGCTGTCTGACCT 61.124 55.000 5.17 0.00 40.80 3.85
584 602 0.888285 GCTTGTTGCCTGAGCTGTCT 60.888 55.000 0.00 0.00 40.80 3.41
600 618 3.679389 ACAAATCGAGTTGGATCTGCTT 58.321 40.909 27.16 3.06 32.50 3.91
654 672 1.823169 TTCTAGGCGCCCTTGTCGTT 61.823 55.000 26.15 3.86 34.61 3.85
656 674 1.519455 CTTCTAGGCGCCCTTGTCG 60.519 63.158 26.15 3.53 34.61 4.35
686 704 7.568349 ACTAGCTATGAAGAAATCATCCACAA 58.432 34.615 0.00 0.00 45.91 3.33
776 899 9.357652 GCACACATTAAATTCATACAAACTCAT 57.642 29.630 0.00 0.00 0.00 2.90
796 919 2.805671 CGAACACCTCAATTAGCACACA 59.194 45.455 0.00 0.00 0.00 3.72
811 934 5.403897 TTTCTCTTCACACAATCGAACAC 57.596 39.130 0.00 0.00 0.00 3.32
815 938 8.495949 GTCTTAAATTTCTCTTCACACAATCGA 58.504 33.333 0.00 0.00 0.00 3.59
818 941 8.070171 CACGTCTTAAATTTCTCTTCACACAAT 58.930 33.333 0.00 0.00 0.00 2.71
824 947 5.404366 CGGACACGTCTTAAATTTCTCTTCA 59.596 40.000 0.00 0.00 34.81 3.02
837 960 0.391597 ACATTCACCGGACACGTCTT 59.608 50.000 9.46 0.00 38.78 3.01
841 964 2.092291 CGGACATTCACCGGACACG 61.092 63.158 9.46 0.00 45.65 4.49
864 987 1.722464 CACAGACGCGTTTCGGATTTA 59.278 47.619 15.53 0.00 43.86 1.40
872 995 1.533731 CAAATACCCACAGACGCGTTT 59.466 47.619 15.53 4.14 0.00 3.60
874 997 0.319083 TCAAATACCCACAGACGCGT 59.681 50.000 13.85 13.85 0.00 6.01
875 998 0.999406 CTCAAATACCCACAGACGCG 59.001 55.000 3.53 3.53 0.00 6.01
876 999 1.369625 CCTCAAATACCCACAGACGC 58.630 55.000 0.00 0.00 0.00 5.19
877 1000 1.338674 TGCCTCAAATACCCACAGACG 60.339 52.381 0.00 0.00 0.00 4.18
878 1001 2.084546 GTGCCTCAAATACCCACAGAC 58.915 52.381 0.00 0.00 0.00 3.51
879 1002 1.338674 CGTGCCTCAAATACCCACAGA 60.339 52.381 0.00 0.00 0.00 3.41
881 1004 0.322098 CCGTGCCTCAAATACCCACA 60.322 55.000 0.00 0.00 0.00 4.17
882 1005 1.029947 CCCGTGCCTCAAATACCCAC 61.030 60.000 0.00 0.00 0.00 4.61
883 1006 1.202099 TCCCGTGCCTCAAATACCCA 61.202 55.000 0.00 0.00 0.00 4.51
887 1010 1.748493 GCAAATCCCGTGCCTCAAATA 59.252 47.619 0.00 0.00 35.91 1.40
888 1011 0.532115 GCAAATCCCGTGCCTCAAAT 59.468 50.000 0.00 0.00 35.91 2.32
896 1019 0.953471 TCGACTTGGCAAATCCCGTG 60.953 55.000 2.74 0.00 0.00 4.94
911 1034 1.063764 GATGGACCGTCTACAGTCGAC 59.936 57.143 7.70 7.70 33.66 4.20
915 2719 1.471684 GAACGATGGACCGTCTACAGT 59.528 52.381 11.95 0.00 42.54 3.55
923 2729 0.179108 GGAAGAGGAACGATGGACCG 60.179 60.000 0.00 0.00 0.00 4.79
925 2731 2.418884 GGAAGGAAGAGGAACGATGGAC 60.419 54.545 0.00 0.00 0.00 4.02
970 2817 2.665000 CTTCTTCCGGCTGGCTCA 59.335 61.111 6.73 0.00 34.14 4.26
1217 3064 5.351740 AGCTAAGAAATTTAACTGAGACGGC 59.648 40.000 0.00 0.00 0.00 5.68
1241 3088 0.533085 TGAATTCCCACACACGCGAA 60.533 50.000 15.93 0.00 0.00 4.70
1272 3119 8.413229 AGTAAACGCAATAATAATGAAGGCAAT 58.587 29.630 0.00 0.00 0.00 3.56
1280 3127 8.068893 AGTACCGAGTAAACGCAATAATAATG 57.931 34.615 0.00 0.00 0.00 1.90
1293 3140 8.742777 ACATGTAAGATGTAAGTACCGAGTAAA 58.257 33.333 0.00 0.00 0.00 2.01
1428 3276 6.848562 AGGTATGGGTCCTATCTCAAAATT 57.151 37.500 0.00 0.00 33.04 1.82
1564 3418 2.386661 AGCTGTGTATGTTCCTTCCG 57.613 50.000 0.00 0.00 0.00 4.30
1870 3724 9.790344 ATCCAGGAGATTAGATCAAAACAATAG 57.210 33.333 0.00 0.00 0.00 1.73
2037 3891 0.517316 CCAAGCTGGTAACGCTCAAC 59.483 55.000 0.00 0.00 43.79 3.18
2255 4195 2.440409 GGATGTGCCTGTGATTTCTGT 58.560 47.619 0.00 0.00 0.00 3.41
2304 4244 6.533819 TGTTACTTTTGTTCACTACCGATG 57.466 37.500 0.00 0.00 0.00 3.84
2377 4322 2.096013 TCTCTGTACGAGAACAGCATCG 59.904 50.000 12.87 0.00 45.55 3.84
2388 4333 8.082242 CACCATGTATTATGATTCTCTGTACGA 58.918 37.037 0.00 0.00 0.00 3.43
2390 4335 9.197694 GTCACCATGTATTATGATTCTCTGTAC 57.802 37.037 0.00 0.00 0.00 2.90
2452 4397 6.294675 GCCGTATAACATATACTACACACCCA 60.295 42.308 6.10 0.00 0.00 4.51
2500 4532 5.941948 AAACCACACACTATAGCTGTTTC 57.058 39.130 0.00 0.00 0.00 2.78
2617 4649 1.937899 CATCATCATCTGCGCAAGACA 59.062 47.619 13.05 2.40 37.88 3.41
2618 4650 2.207590 TCATCATCATCTGCGCAAGAC 58.792 47.619 13.05 0.00 37.88 3.01
2835 4867 6.653320 ACTTAACTTTCAACAGTCACAACTCA 59.347 34.615 0.00 0.00 31.71 3.41
2878 4911 1.163554 CACCAGCTGAGAAGAAAGGC 58.836 55.000 17.39 0.00 0.00 4.35
2882 4915 1.345741 CCTGTCACCAGCTGAGAAGAA 59.654 52.381 17.39 1.82 37.38 2.52
3101 5134 2.498644 TCAACCATTCGTGGCCAATA 57.501 45.000 7.24 0.00 0.00 1.90
3218 5588 4.431131 CCCCTGCCAGCCGTTCAT 62.431 66.667 0.00 0.00 0.00 2.57
3232 5602 1.067582 CATCTACGAACGGAGCCCC 59.932 63.158 1.17 0.00 0.00 5.80
3233 5603 1.067582 CCATCTACGAACGGAGCCC 59.932 63.158 1.17 0.00 0.00 5.19
3236 5606 0.527817 GGTGCCATCTACGAACGGAG 60.528 60.000 0.00 0.00 0.00 4.63
3237 5607 0.968901 AGGTGCCATCTACGAACGGA 60.969 55.000 0.00 0.00 0.00 4.69
3238 5608 0.527817 GAGGTGCCATCTACGAACGG 60.528 60.000 0.00 0.00 0.00 4.44
3240 5610 1.927895 CAGAGGTGCCATCTACGAAC 58.072 55.000 0.00 0.00 0.00 3.95
3311 5683 9.760077 GTTGAATCGTAAATAAAGAGAGGGATA 57.240 33.333 0.00 0.00 0.00 2.59
3315 5687 7.466050 GCTGGTTGAATCGTAAATAAAGAGAGG 60.466 40.741 0.00 0.00 0.00 3.69
3329 5701 4.333649 AGTGATGTAATGCTGGTTGAATCG 59.666 41.667 0.00 0.00 0.00 3.34
3331 5703 7.701539 TTAAGTGATGTAATGCTGGTTGAAT 57.298 32.000 0.00 0.00 0.00 2.57
3363 5735 1.531739 CCTCCTAGCGAGCTCATCCC 61.532 65.000 15.40 0.00 37.27 3.85
3367 5739 1.826054 GAGCCTCCTAGCGAGCTCA 60.826 63.158 15.40 0.00 39.55 4.26
3436 5811 6.754675 GTGCAAAGTCCTAGAGAGACTAATTC 59.245 42.308 0.00 0.00 43.77 2.17
3446 5826 5.940470 ACCTAATTTGTGCAAAGTCCTAGAG 59.060 40.000 0.77 0.00 33.32 2.43
3456 5836 6.719370 ACTTTCCTCATACCTAATTTGTGCAA 59.281 34.615 0.00 0.00 0.00 4.08
3457 5837 6.245408 ACTTTCCTCATACCTAATTTGTGCA 58.755 36.000 0.00 0.00 0.00 4.57
3465 5845 4.640201 GCATGCAACTTTCCTCATACCTAA 59.360 41.667 14.21 0.00 0.00 2.69
3466 5846 4.199310 GCATGCAACTTTCCTCATACCTA 58.801 43.478 14.21 0.00 0.00 3.08
3495 5875 5.592282 TGTTCTATGGTCAGCAAGTCAAAAA 59.408 36.000 0.00 0.00 0.00 1.94
3496 5876 5.129634 TGTTCTATGGTCAGCAAGTCAAAA 58.870 37.500 0.00 0.00 0.00 2.44
3497 5877 4.713553 TGTTCTATGGTCAGCAAGTCAAA 58.286 39.130 0.00 0.00 0.00 2.69
3498 5878 4.350368 TGTTCTATGGTCAGCAAGTCAA 57.650 40.909 0.00 0.00 0.00 3.18
3499 5879 4.350368 TTGTTCTATGGTCAGCAAGTCA 57.650 40.909 0.00 0.00 0.00 3.41
3500 5880 4.937620 TGATTGTTCTATGGTCAGCAAGTC 59.062 41.667 0.00 0.00 0.00 3.01
3501 5881 4.910195 TGATTGTTCTATGGTCAGCAAGT 58.090 39.130 0.00 0.00 0.00 3.16
3502 5882 6.318144 AGAATGATTGTTCTATGGTCAGCAAG 59.682 38.462 0.00 0.00 36.71 4.01
3503 5883 6.182627 AGAATGATTGTTCTATGGTCAGCAA 58.817 36.000 0.00 0.00 36.71 3.91
3504 5884 5.748402 AGAATGATTGTTCTATGGTCAGCA 58.252 37.500 0.00 0.00 36.71 4.41
3505 5885 7.976135 ATAGAATGATTGTTCTATGGTCAGC 57.024 36.000 8.03 0.00 45.20 4.26
3549 5929 8.417884 TGCTAGCCTTGTTGTAAATAACTTTTT 58.582 29.630 13.29 0.00 0.00 1.94
3550 5930 7.947282 TGCTAGCCTTGTTGTAAATAACTTTT 58.053 30.769 13.29 0.00 0.00 2.27
3551 5931 7.519032 TGCTAGCCTTGTTGTAAATAACTTT 57.481 32.000 13.29 0.00 0.00 2.66
3552 5932 7.519032 TTGCTAGCCTTGTTGTAAATAACTT 57.481 32.000 13.29 0.00 0.00 2.66
3553 5933 6.349363 GCTTGCTAGCCTTGTTGTAAATAACT 60.349 38.462 13.29 0.00 41.74 2.24
3554 5934 5.800438 GCTTGCTAGCCTTGTTGTAAATAAC 59.200 40.000 13.29 0.00 41.74 1.89
3555 5935 5.949735 GCTTGCTAGCCTTGTTGTAAATAA 58.050 37.500 13.29 0.00 41.74 1.40
3556 5936 5.560966 GCTTGCTAGCCTTGTTGTAAATA 57.439 39.130 13.29 0.00 41.74 1.40
3557 5937 4.440839 GCTTGCTAGCCTTGTTGTAAAT 57.559 40.909 13.29 0.00 41.74 1.40
3558 5938 3.915437 GCTTGCTAGCCTTGTTGTAAA 57.085 42.857 13.29 0.00 41.74 2.01
3570 5950 3.141398 TGGTTGAACTTCTGCTTGCTAG 58.859 45.455 0.00 0.00 0.00 3.42
3571 5951 3.207265 TGGTTGAACTTCTGCTTGCTA 57.793 42.857 0.00 0.00 0.00 3.49
3572 5952 2.057137 TGGTTGAACTTCTGCTTGCT 57.943 45.000 0.00 0.00 0.00 3.91
3573 5953 2.869233 TTGGTTGAACTTCTGCTTGC 57.131 45.000 0.00 0.00 0.00 4.01
3574 5954 4.278170 TGGTATTGGTTGAACTTCTGCTTG 59.722 41.667 0.00 0.00 0.00 4.01
3575 5955 4.469657 TGGTATTGGTTGAACTTCTGCTT 58.530 39.130 0.00 0.00 0.00 3.91
3576 5956 4.074970 CTGGTATTGGTTGAACTTCTGCT 58.925 43.478 0.00 0.00 0.00 4.24
3577 5957 3.366374 GCTGGTATTGGTTGAACTTCTGC 60.366 47.826 0.00 0.00 0.00 4.26
3578 5958 4.074970 AGCTGGTATTGGTTGAACTTCTG 58.925 43.478 0.00 0.00 0.00 3.02
3579 5959 4.042187 AGAGCTGGTATTGGTTGAACTTCT 59.958 41.667 0.00 0.00 0.00 2.85
3580 5960 4.327680 AGAGCTGGTATTGGTTGAACTTC 58.672 43.478 0.00 0.00 0.00 3.01
3581 5961 4.373156 AGAGCTGGTATTGGTTGAACTT 57.627 40.909 0.00 0.00 0.00 2.66
3582 5962 4.080863 CCTAGAGCTGGTATTGGTTGAACT 60.081 45.833 0.00 0.00 0.00 3.01
3583 5963 4.081087 TCCTAGAGCTGGTATTGGTTGAAC 60.081 45.833 0.00 0.00 0.00 3.18
3584 5964 4.101114 TCCTAGAGCTGGTATTGGTTGAA 58.899 43.478 0.00 0.00 0.00 2.69
3585 5965 3.719871 TCCTAGAGCTGGTATTGGTTGA 58.280 45.455 0.00 0.00 0.00 3.18
3586 5966 4.487714 TTCCTAGAGCTGGTATTGGTTG 57.512 45.455 0.00 0.00 0.00 3.77
3587 5967 4.288626 TGTTTCCTAGAGCTGGTATTGGTT 59.711 41.667 0.00 0.00 0.00 3.67
3588 5968 3.844211 TGTTTCCTAGAGCTGGTATTGGT 59.156 43.478 0.00 0.00 0.00 3.67
3589 5969 4.487714 TGTTTCCTAGAGCTGGTATTGG 57.512 45.455 0.00 0.00 0.00 3.16
3590 5970 5.674525 TGATGTTTCCTAGAGCTGGTATTG 58.325 41.667 0.00 0.00 0.00 1.90
3591 5971 5.957771 TGATGTTTCCTAGAGCTGGTATT 57.042 39.130 0.00 0.00 0.00 1.89
3592 5972 7.805083 ATATGATGTTTCCTAGAGCTGGTAT 57.195 36.000 0.00 0.00 0.00 2.73
3593 5973 7.093727 GCTATATGATGTTTCCTAGAGCTGGTA 60.094 40.741 0.00 0.00 35.60 3.25
3594 5974 6.295575 GCTATATGATGTTTCCTAGAGCTGGT 60.296 42.308 0.00 0.00 35.60 4.00
3595 5975 6.105333 GCTATATGATGTTTCCTAGAGCTGG 58.895 44.000 0.00 0.00 35.60 4.85
3596 5976 6.695429 TGCTATATGATGTTTCCTAGAGCTG 58.305 40.000 0.00 0.00 37.84 4.24
3597 5977 6.924913 TGCTATATGATGTTTCCTAGAGCT 57.075 37.500 0.00 0.00 37.84 4.09
3598 5978 9.658799 TTTATGCTATATGATGTTTCCTAGAGC 57.341 33.333 0.00 0.00 37.63 4.09
3623 6003 9.628500 AGCCGGATAGATAGTTTTCTTTAATTT 57.372 29.630 5.05 0.00 0.00 1.82
3624 6004 9.274206 GAGCCGGATAGATAGTTTTCTTTAATT 57.726 33.333 5.05 0.00 0.00 1.40
3625 6005 8.652290 AGAGCCGGATAGATAGTTTTCTTTAAT 58.348 33.333 5.05 0.00 0.00 1.40
3626 6006 7.926555 CAGAGCCGGATAGATAGTTTTCTTTAA 59.073 37.037 5.05 0.00 0.00 1.52
3627 6007 7.287005 TCAGAGCCGGATAGATAGTTTTCTTTA 59.713 37.037 5.05 0.00 0.00 1.85
3628 6008 6.098409 TCAGAGCCGGATAGATAGTTTTCTTT 59.902 38.462 5.05 0.00 0.00 2.52
3629 6009 5.598830 TCAGAGCCGGATAGATAGTTTTCTT 59.401 40.000 5.05 0.00 0.00 2.52
3630 6010 5.141182 TCAGAGCCGGATAGATAGTTTTCT 58.859 41.667 5.05 0.00 0.00 2.52
3631 6011 5.455056 TCAGAGCCGGATAGATAGTTTTC 57.545 43.478 5.05 0.00 0.00 2.29
3632 6012 5.871396 TTCAGAGCCGGATAGATAGTTTT 57.129 39.130 5.05 0.00 0.00 2.43
3633 6013 5.777732 AGATTCAGAGCCGGATAGATAGTTT 59.222 40.000 5.05 0.00 0.00 2.66
3634 6014 5.329399 AGATTCAGAGCCGGATAGATAGTT 58.671 41.667 5.05 0.00 0.00 2.24
3635 6015 4.929479 AGATTCAGAGCCGGATAGATAGT 58.071 43.478 5.05 0.00 0.00 2.12
3636 6016 5.184864 ACAAGATTCAGAGCCGGATAGATAG 59.815 44.000 5.05 0.00 0.00 2.08
3637 6017 5.080337 ACAAGATTCAGAGCCGGATAGATA 58.920 41.667 5.05 0.00 0.00 1.98
3638 6018 3.900601 ACAAGATTCAGAGCCGGATAGAT 59.099 43.478 5.05 0.00 0.00 1.98
3639 6019 3.300388 ACAAGATTCAGAGCCGGATAGA 58.700 45.455 5.05 0.00 0.00 1.98
3640 6020 3.742433 ACAAGATTCAGAGCCGGATAG 57.258 47.619 5.05 0.00 0.00 2.08
3641 6021 3.432186 CCAACAAGATTCAGAGCCGGATA 60.432 47.826 5.05 0.00 0.00 2.59
3642 6022 2.636830 CAACAAGATTCAGAGCCGGAT 58.363 47.619 5.05 0.00 0.00 4.18
3643 6023 1.339055 CCAACAAGATTCAGAGCCGGA 60.339 52.381 5.05 0.00 0.00 5.14
3644 6024 1.089920 CCAACAAGATTCAGAGCCGG 58.910 55.000 0.00 0.00 0.00 6.13
3645 6025 0.449388 GCCAACAAGATTCAGAGCCG 59.551 55.000 0.00 0.00 0.00 5.52
3646 6026 0.813821 GGCCAACAAGATTCAGAGCC 59.186 55.000 0.00 0.00 0.00 4.70
3647 6027 1.831580 AGGCCAACAAGATTCAGAGC 58.168 50.000 5.01 0.00 0.00 4.09
3648 6028 2.490903 CCAAGGCCAACAAGATTCAGAG 59.509 50.000 5.01 0.00 0.00 3.35
3649 6029 2.108075 TCCAAGGCCAACAAGATTCAGA 59.892 45.455 5.01 0.00 0.00 3.27
3650 6030 2.229784 GTCCAAGGCCAACAAGATTCAG 59.770 50.000 5.01 0.00 0.00 3.02
3651 6031 2.238521 GTCCAAGGCCAACAAGATTCA 58.761 47.619 5.01 0.00 0.00 2.57
3652 6032 2.238521 TGTCCAAGGCCAACAAGATTC 58.761 47.619 5.01 0.00 0.00 2.52
3653 6033 2.380064 TGTCCAAGGCCAACAAGATT 57.620 45.000 5.01 0.00 0.00 2.40
3654 6034 2.610438 ATGTCCAAGGCCAACAAGAT 57.390 45.000 5.01 0.00 0.00 2.40
3655 6035 2.380064 AATGTCCAAGGCCAACAAGA 57.620 45.000 5.01 0.00 0.00 3.02
3656 6036 3.473923 AAAATGTCCAAGGCCAACAAG 57.526 42.857 5.01 0.00 0.00 3.16
3657 6037 3.244044 GCTAAAATGTCCAAGGCCAACAA 60.244 43.478 5.01 0.00 0.00 2.83
3658 6038 2.298729 GCTAAAATGTCCAAGGCCAACA 59.701 45.455 5.01 3.90 0.00 3.33
3659 6039 2.562738 AGCTAAAATGTCCAAGGCCAAC 59.437 45.455 5.01 0.00 0.00 3.77
3660 6040 2.825532 GAGCTAAAATGTCCAAGGCCAA 59.174 45.455 5.01 0.00 0.00 4.52
3661 6041 2.041620 AGAGCTAAAATGTCCAAGGCCA 59.958 45.455 5.01 0.00 0.00 5.36
3662 6042 2.424956 CAGAGCTAAAATGTCCAAGGCC 59.575 50.000 0.00 0.00 0.00 5.19
3663 6043 3.084786 ACAGAGCTAAAATGTCCAAGGC 58.915 45.455 0.00 0.00 0.00 4.35
3664 6044 6.599244 TCAATACAGAGCTAAAATGTCCAAGG 59.401 38.462 0.00 0.00 0.00 3.61
3665 6045 7.615582 TCAATACAGAGCTAAAATGTCCAAG 57.384 36.000 0.00 0.00 0.00 3.61
3666 6046 7.615582 CTCAATACAGAGCTAAAATGTCCAA 57.384 36.000 0.00 0.00 0.00 3.53
3679 6059 5.507817 GGACTGATCAGAGCTCAATACAGAG 60.508 48.000 29.27 12.95 38.68 3.35
3680 6060 4.340666 GGACTGATCAGAGCTCAATACAGA 59.659 45.833 29.27 12.31 0.00 3.41
3681 6061 4.341806 AGGACTGATCAGAGCTCAATACAG 59.658 45.833 29.27 19.75 0.00 2.74
3682 6062 4.285020 AGGACTGATCAGAGCTCAATACA 58.715 43.478 29.27 9.68 0.00 2.29
3683 6063 4.935352 AGGACTGATCAGAGCTCAATAC 57.065 45.455 29.27 5.52 0.00 1.89
3684 6064 4.343526 GGAAGGACTGATCAGAGCTCAATA 59.656 45.833 29.27 0.24 0.00 1.90
3685 6065 3.134442 GGAAGGACTGATCAGAGCTCAAT 59.866 47.826 29.27 8.99 0.00 2.57
3686 6066 2.499289 GGAAGGACTGATCAGAGCTCAA 59.501 50.000 29.27 3.59 0.00 3.02
3687 6067 2.106566 GGAAGGACTGATCAGAGCTCA 58.893 52.381 29.27 0.00 0.00 4.26
3688 6068 1.412343 GGGAAGGACTGATCAGAGCTC 59.588 57.143 29.27 15.68 0.00 4.09
3689 6069 1.494960 GGGAAGGACTGATCAGAGCT 58.505 55.000 29.27 6.90 0.00 4.09
3690 6070 0.103937 CGGGAAGGACTGATCAGAGC 59.896 60.000 29.27 18.70 0.00 4.09
3691 6071 0.103937 GCGGGAAGGACTGATCAGAG 59.896 60.000 29.27 4.94 0.00 3.35
3692 6072 0.614697 TGCGGGAAGGACTGATCAGA 60.615 55.000 29.27 0.00 0.00 3.27
3693 6073 0.467384 ATGCGGGAAGGACTGATCAG 59.533 55.000 21.37 21.37 0.00 2.90
3694 6074 0.178767 CATGCGGGAAGGACTGATCA 59.821 55.000 0.00 0.00 0.00 2.92
3695 6075 0.179000 ACATGCGGGAAGGACTGATC 59.821 55.000 0.00 0.00 0.00 2.92
3696 6076 0.107508 CACATGCGGGAAGGACTGAT 60.108 55.000 0.00 0.00 0.00 2.90
3697 6077 1.296392 CACATGCGGGAAGGACTGA 59.704 57.895 0.00 0.00 0.00 3.41
3698 6078 1.746615 CCACATGCGGGAAGGACTG 60.747 63.158 0.00 0.00 0.00 3.51
3699 6079 0.907704 TACCACATGCGGGAAGGACT 60.908 55.000 10.76 0.00 0.00 3.85
3700 6080 0.743345 GTACCACATGCGGGAAGGAC 60.743 60.000 10.76 0.68 0.00 3.85
3701 6081 0.907704 AGTACCACATGCGGGAAGGA 60.908 55.000 10.76 0.00 0.00 3.36
3702 6082 0.035439 AAGTACCACATGCGGGAAGG 60.035 55.000 10.76 0.00 0.00 3.46
3703 6083 1.369625 GAAGTACCACATGCGGGAAG 58.630 55.000 10.76 0.00 0.00 3.46
3704 6084 0.035820 GGAAGTACCACATGCGGGAA 60.036 55.000 10.76 0.00 38.79 3.97
3705 6085 1.195442 TGGAAGTACCACATGCGGGA 61.195 55.000 10.76 0.00 44.64 5.14
3706 6086 0.744414 CTGGAAGTACCACATGCGGG 60.744 60.000 4.47 3.45 44.64 6.13
3707 6087 1.369091 GCTGGAAGTACCACATGCGG 61.369 60.000 0.00 0.00 44.64 5.69
3708 6088 1.369091 GGCTGGAAGTACCACATGCG 61.369 60.000 0.00 0.00 44.64 4.73
3709 6089 0.035056 AGGCTGGAAGTACCACATGC 60.035 55.000 0.00 0.00 44.64 4.06
3710 6090 2.086869 CAAGGCTGGAAGTACCACATG 58.913 52.381 0.00 0.00 44.64 3.21
3711 6091 1.004745 CCAAGGCTGGAAGTACCACAT 59.995 52.381 0.00 0.00 46.92 3.21
3712 6092 0.400213 CCAAGGCTGGAAGTACCACA 59.600 55.000 0.00 0.00 46.92 4.17
3713 6093 3.249687 CCAAGGCTGGAAGTACCAC 57.750 57.895 0.00 0.00 46.92 4.16
3722 6102 1.893544 CTGCTCATATCCAAGGCTGG 58.106 55.000 0.00 0.00 45.08 4.85
3723 6103 1.236628 GCTGCTCATATCCAAGGCTG 58.763 55.000 0.00 0.00 0.00 4.85
3724 6104 0.841961 TGCTGCTCATATCCAAGGCT 59.158 50.000 0.00 0.00 0.00 4.58
3725 6105 1.236628 CTGCTGCTCATATCCAAGGC 58.763 55.000 0.00 0.00 0.00 4.35
3726 6106 1.236628 GCTGCTGCTCATATCCAAGG 58.763 55.000 8.53 0.00 36.03 3.61
3738 6118 1.397692 GATCTTCAGACAAGCTGCTGC 59.602 52.381 1.35 7.62 44.52 5.25
3739 6119 2.975266 AGATCTTCAGACAAGCTGCTG 58.025 47.619 1.35 0.00 44.52 4.41
3740 6120 3.244491 ACAAGATCTTCAGACAAGCTGCT 60.244 43.478 4.57 0.00 44.52 4.24
3741 6121 3.072944 ACAAGATCTTCAGACAAGCTGC 58.927 45.455 4.57 0.00 44.52 5.25
3742 6122 4.313282 TGACAAGATCTTCAGACAAGCTG 58.687 43.478 4.57 0.00 46.31 4.24
3743 6123 4.613925 TGACAAGATCTTCAGACAAGCT 57.386 40.909 4.57 0.00 0.00 3.74
3744 6124 5.629097 CAATGACAAGATCTTCAGACAAGC 58.371 41.667 4.57 0.00 0.00 4.01
3745 6125 5.629097 GCAATGACAAGATCTTCAGACAAG 58.371 41.667 4.57 0.00 0.00 3.16
3746 6126 4.152938 CGCAATGACAAGATCTTCAGACAA 59.847 41.667 4.57 0.00 0.00 3.18
3747 6127 3.681417 CGCAATGACAAGATCTTCAGACA 59.319 43.478 4.57 2.76 0.00 3.41
3748 6128 3.484886 GCGCAATGACAAGATCTTCAGAC 60.485 47.826 4.57 0.00 0.00 3.51
3749 6129 2.674852 GCGCAATGACAAGATCTTCAGA 59.325 45.455 4.57 0.00 0.00 3.27
3750 6130 2.417586 TGCGCAATGACAAGATCTTCAG 59.582 45.455 8.16 0.00 0.00 3.02
3751 6131 2.160219 GTGCGCAATGACAAGATCTTCA 59.840 45.455 14.00 1.80 0.00 3.02
3752 6132 2.160219 TGTGCGCAATGACAAGATCTTC 59.840 45.455 14.00 0.00 0.00 2.87
3753 6133 2.095567 GTGTGCGCAATGACAAGATCTT 60.096 45.455 14.00 0.88 0.00 2.40
3754 6134 1.466167 GTGTGCGCAATGACAAGATCT 59.534 47.619 14.00 0.00 0.00 2.75
3755 6135 1.197492 TGTGTGCGCAATGACAAGATC 59.803 47.619 14.00 0.00 0.00 2.75
3756 6136 1.069022 GTGTGTGCGCAATGACAAGAT 60.069 47.619 14.00 0.00 0.00 2.40
3757 6137 0.307453 GTGTGTGCGCAATGACAAGA 59.693 50.000 14.00 0.00 0.00 3.02
3758 6138 0.661187 GGTGTGTGCGCAATGACAAG 60.661 55.000 14.00 0.00 0.00 3.16
3759 6139 1.358402 GGTGTGTGCGCAATGACAA 59.642 52.632 14.00 0.00 0.00 3.18
3760 6140 1.379642 TTGGTGTGTGCGCAATGACA 61.380 50.000 14.00 13.17 0.00 3.58
3761 6141 0.248825 TTTGGTGTGTGCGCAATGAC 60.249 50.000 14.00 10.31 0.00 3.06
3762 6142 0.672889 ATTTGGTGTGTGCGCAATGA 59.327 45.000 14.00 0.00 0.00 2.57
3763 6143 0.785378 CATTTGGTGTGTGCGCAATG 59.215 50.000 14.00 5.75 0.00 2.82
3764 6144 0.945265 GCATTTGGTGTGTGCGCAAT 60.945 50.000 14.00 0.00 0.00 3.56
3765 6145 1.591059 GCATTTGGTGTGTGCGCAA 60.591 52.632 14.00 0.00 0.00 4.85
3766 6146 2.027314 GCATTTGGTGTGTGCGCA 59.973 55.556 5.66 5.66 0.00 6.09
3767 6147 2.734346 GGCATTTGGTGTGTGCGC 60.734 61.111 0.00 0.00 39.69 6.09
3768 6148 2.049248 GGGCATTTGGTGTGTGCG 60.049 61.111 0.00 0.00 39.69 5.34
3769 6149 2.037620 TTGGGGCATTTGGTGTGTGC 62.038 55.000 0.00 0.00 38.12 4.57
3770 6150 0.249826 GTTGGGGCATTTGGTGTGTG 60.250 55.000 0.00 0.00 0.00 3.82
3771 6151 0.398381 AGTTGGGGCATTTGGTGTGT 60.398 50.000 0.00 0.00 0.00 3.72
3772 6152 0.033781 CAGTTGGGGCATTTGGTGTG 59.966 55.000 0.00 0.00 0.00 3.82
3773 6153 1.757423 GCAGTTGGGGCATTTGGTGT 61.757 55.000 0.00 0.00 0.00 4.16
3774 6154 1.004679 GCAGTTGGGGCATTTGGTG 60.005 57.895 0.00 0.00 0.00 4.17
3775 6155 0.763986 AAGCAGTTGGGGCATTTGGT 60.764 50.000 0.00 0.00 0.00 3.67
3776 6156 0.320946 CAAGCAGTTGGGGCATTTGG 60.321 55.000 0.00 0.00 0.00 3.28
3777 6157 0.952010 GCAAGCAGTTGGGGCATTTG 60.952 55.000 0.00 0.00 33.87 2.32
3778 6158 1.372307 GCAAGCAGTTGGGGCATTT 59.628 52.632 0.00 0.00 33.87 2.32
3779 6159 2.586293 GGCAAGCAGTTGGGGCATT 61.586 57.895 0.00 0.00 33.87 3.56
3780 6160 2.999063 GGCAAGCAGTTGGGGCAT 60.999 61.111 0.00 0.00 33.87 4.40
3781 6161 3.909802 TATTGGCAAGCAGTTGGGGCA 62.910 52.381 5.96 0.00 33.87 5.36
3782 6162 1.257055 TATTGGCAAGCAGTTGGGGC 61.257 55.000 5.96 0.00 33.87 5.80
3783 6163 1.137479 CATATTGGCAAGCAGTTGGGG 59.863 52.381 5.96 0.00 33.87 4.96
3784 6164 2.101783 TCATATTGGCAAGCAGTTGGG 58.898 47.619 5.96 0.00 33.87 4.12
3785 6165 5.475909 AGATATCATATTGGCAAGCAGTTGG 59.524 40.000 5.96 0.00 33.87 3.77
3786 6166 6.570672 AGATATCATATTGGCAAGCAGTTG 57.429 37.500 5.96 0.00 36.67 3.16
3787 6167 7.389884 CACTAGATATCATATTGGCAAGCAGTT 59.610 37.037 5.96 0.00 0.00 3.16
3788 6168 6.877855 CACTAGATATCATATTGGCAAGCAGT 59.122 38.462 5.96 0.00 0.00 4.40
3789 6169 6.183360 GCACTAGATATCATATTGGCAAGCAG 60.183 42.308 5.96 0.00 0.00 4.24
3790 6170 5.645067 GCACTAGATATCATATTGGCAAGCA 59.355 40.000 5.96 0.00 0.00 3.91
3791 6171 5.645067 TGCACTAGATATCATATTGGCAAGC 59.355 40.000 5.96 0.00 0.00 4.01
3792 6172 7.677454 TTGCACTAGATATCATATTGGCAAG 57.323 36.000 5.96 0.00 33.18 4.01
3793 6173 7.337689 GGATTGCACTAGATATCATATTGGCAA 59.662 37.037 16.34 16.34 41.10 4.52
3794 6174 6.825213 GGATTGCACTAGATATCATATTGGCA 59.175 38.462 5.32 4.31 0.00 4.92
3795 6175 6.261826 GGGATTGCACTAGATATCATATTGGC 59.738 42.308 5.32 1.73 0.00 4.52
3796 6176 6.481313 CGGGATTGCACTAGATATCATATTGG 59.519 42.308 5.32 0.00 0.00 3.16
3797 6177 6.018425 GCGGGATTGCACTAGATATCATATTG 60.018 42.308 5.32 1.30 34.15 1.90
3798 6178 6.051717 GCGGGATTGCACTAGATATCATATT 58.948 40.000 5.32 0.00 34.15 1.28
3799 6179 5.605534 GCGGGATTGCACTAGATATCATAT 58.394 41.667 5.32 0.00 34.15 1.78
3800 6180 4.440112 CGCGGGATTGCACTAGATATCATA 60.440 45.833 5.32 0.00 34.15 2.15
3801 6181 3.677148 CGCGGGATTGCACTAGATATCAT 60.677 47.826 5.32 0.00 34.15 2.45
3802 6182 2.352715 CGCGGGATTGCACTAGATATCA 60.353 50.000 5.32 0.00 34.15 2.15
3803 6183 2.094700 TCGCGGGATTGCACTAGATATC 60.095 50.000 6.13 0.00 34.15 1.63
3804 6184 1.893137 TCGCGGGATTGCACTAGATAT 59.107 47.619 6.13 0.00 34.15 1.63
3805 6185 1.269723 CTCGCGGGATTGCACTAGATA 59.730 52.381 0.00 0.00 34.15 1.98
3806 6186 0.032678 CTCGCGGGATTGCACTAGAT 59.967 55.000 0.00 0.00 34.15 1.98
3807 6187 1.437573 CTCGCGGGATTGCACTAGA 59.562 57.895 0.00 0.00 34.15 2.43
3808 6188 1.592669 CCTCGCGGGATTGCACTAG 60.593 63.158 8.08 0.00 37.23 2.57
3809 6189 1.609635 TTCCTCGCGGGATTGCACTA 61.610 55.000 8.08 0.00 44.66 2.74
3810 6190 2.463589 TTTCCTCGCGGGATTGCACT 62.464 55.000 8.08 0.00 44.66 4.40
3811 6191 1.376609 ATTTCCTCGCGGGATTGCAC 61.377 55.000 8.08 0.00 44.66 4.57
3812 6192 0.679640 AATTTCCTCGCGGGATTGCA 60.680 50.000 8.08 0.00 44.66 4.08
3813 6193 0.029433 GAATTTCCTCGCGGGATTGC 59.971 55.000 8.08 0.00 44.66 3.56
3814 6194 1.378531 TGAATTTCCTCGCGGGATTG 58.621 50.000 8.08 0.00 44.66 2.67
3815 6195 2.348411 ATGAATTTCCTCGCGGGATT 57.652 45.000 8.08 0.00 44.66 3.01
3816 6196 2.348411 AATGAATTTCCTCGCGGGAT 57.652 45.000 8.08 0.00 44.66 3.85
3817 6197 2.122783 AAATGAATTTCCTCGCGGGA 57.877 45.000 8.08 10.34 43.41 5.14
3818 6198 4.755123 ACTATAAATGAATTTCCTCGCGGG 59.245 41.667 6.13 0.59 0.00 6.13
3819 6199 5.465390 TGACTATAAATGAATTTCCTCGCGG 59.535 40.000 6.13 0.00 0.00 6.46
3820 6200 6.525121 TGACTATAAATGAATTTCCTCGCG 57.475 37.500 0.00 0.00 0.00 5.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.