Multiple sequence alignment - TraesCS4A01G170100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G170100 chr4A 100.000 7992 0 0 1 7992 429436897 429428906 0.000000e+00 14759.0
1 TraesCS4A01G170100 chr4A 93.272 327 22 0 2011 2337 467244805 467244479 4.340000e-132 483.0
2 TraesCS4A01G170100 chr4B 95.410 3987 123 27 4047 7992 163838264 163834297 0.000000e+00 6294.0
3 TraesCS4A01G170100 chr4B 94.048 336 10 5 1305 1640 163838586 163838261 1.200000e-137 501.0
4 TraesCS4A01G170100 chr4B 93.491 169 6 2 1146 1310 163839950 163839783 6.190000e-61 246.0
5 TraesCS4A01G170100 chr4D 94.915 4012 114 19 4047 7992 132775304 132779291 0.000000e+00 6196.0
6 TraesCS4A01G170100 chr4D 92.302 1429 71 8 2365 3773 211167774 211166365 0.000000e+00 1993.0
7 TraesCS4A01G170100 chr4D 95.866 774 21 6 873 1640 132774539 132775307 0.000000e+00 1242.0
8 TraesCS4A01G170100 chr4D 93.548 341 17 5 1675 2011 211168109 211167770 3.330000e-138 503.0
9 TraesCS4A01G170100 chr4D 92.279 272 19 2 3769 4040 211159439 211159170 1.260000e-102 385.0
10 TraesCS4A01G170100 chr4D 87.342 316 26 10 2 309 451679459 451679768 4.590000e-92 350.0
11 TraesCS4A01G170100 chr4D 77.311 119 22 5 7839 7956 503147338 503147224 1.860000e-06 65.8
12 TraesCS4A01G170100 chr6A 98.553 2418 22 3 1636 4051 593280133 593282539 0.000000e+00 4259.0
13 TraesCS4A01G170100 chr6A 94.495 327 18 0 2011 2337 493557817 493558143 9.260000e-139 505.0
14 TraesCS4A01G170100 chr6A 93.598 328 21 0 2010 2337 203523990 203524317 2.590000e-134 490.0
15 TraesCS4A01G170100 chr7A 97.295 1368 32 3 2686 4049 618089527 618088161 0.000000e+00 2316.0
16 TraesCS4A01G170100 chr7A 97.765 1074 23 1 1635 2708 618112836 618111764 0.000000e+00 1849.0
17 TraesCS4A01G170100 chr7A 91.939 521 33 6 354 872 40676267 40675754 0.000000e+00 721.0
18 TraesCS4A01G170100 chr7A 84.974 579 48 17 9 556 40676693 40676123 1.170000e-152 551.0
19 TraesCS4A01G170100 chr7A 81.924 343 55 7 348 685 530517595 530517935 4.720000e-72 283.0
20 TraesCS4A01G170100 chr1B 93.523 1266 50 11 2691 3926 169651892 169653155 0.000000e+00 1855.0
21 TraesCS4A01G170100 chr1B 95.041 363 16 1 1636 1998 169650461 169650821 3.240000e-158 569.0
22 TraesCS4A01G170100 chr1B 76.448 518 81 35 9 507 84971677 84971182 8.010000e-60 243.0
23 TraesCS4A01G170100 chr1B 95.070 142 7 0 2365 2506 169650834 169650975 2.900000e-54 224.0
24 TraesCS4A01G170100 chr1B 91.129 124 8 1 2556 2676 169651171 169651294 1.780000e-36 165.0
25 TraesCS4A01G170100 chr1B 100.000 31 0 0 2504 2534 169651135 169651165 3.120000e-04 58.4
26 TraesCS4A01G170100 chr5A 85.569 589 44 18 1 556 564389482 564390062 5.380000e-161 579.0
27 TraesCS4A01G170100 chr5A 94.083 338 18 1 2000 2337 631533536 631533871 5.530000e-141 512.0
28 TraesCS4A01G170100 chr5A 93.902 328 18 2 2011 2337 607289256 607289582 2.000000e-135 494.0
29 TraesCS4A01G170100 chr5A 92.378 328 25 0 2010 2337 591085751 591086078 1.210000e-127 468.0
30 TraesCS4A01G170100 chr5A 88.824 340 34 4 2000 2337 692399008 692398671 1.600000e-111 414.0
31 TraesCS4A01G170100 chr5A 88.608 316 29 7 348 660 564389911 564390222 2.110000e-100 377.0
32 TraesCS4A01G170100 chr5A 87.500 232 24 3 641 871 709548205 709548432 6.150000e-66 263.0
33 TraesCS4A01G170100 chr5A 79.885 348 57 10 354 694 278305409 278305068 8.010000e-60 243.0
34 TraesCS4A01G170100 chr5A 86.154 130 16 2 744 872 278305064 278304936 1.080000e-28 139.0
35 TraesCS4A01G170100 chr5A 100.000 56 0 0 816 871 564390226 564390281 3.950000e-18 104.0
36 TraesCS4A01G170100 chr2A 85.075 536 58 14 348 872 560212475 560212999 1.980000e-145 527.0
37 TraesCS4A01G170100 chr2A 86.792 318 27 12 2 309 261676991 261677303 2.760000e-89 340.0
38 TraesCS4A01G170100 chr2A 86.859 312 27 11 2 305 658903163 658902858 3.570000e-88 337.0
39 TraesCS4A01G170100 chr2A 75.974 154 23 9 7556 7705 543576536 543576393 5.180000e-07 67.6
40 TraesCS4A01G170100 chr6D 77.333 900 151 38 2 874 276416622 276415749 4.340000e-132 483.0
41 TraesCS4A01G170100 chr6D 74.962 663 120 41 51 693 345312456 345311820 6.150000e-66 263.0
42 TraesCS4A01G170100 chr1A 92.661 327 24 0 2011 2337 324964190 324964516 9.390000e-129 472.0
43 TraesCS4A01G170100 chr2B 82.151 465 67 13 336 796 93054005 93053553 1.260000e-102 385.0
44 TraesCS4A01G170100 chr2B 77.215 158 27 8 7556 7705 141739576 141739420 5.140000e-12 84.2
45 TraesCS4A01G170100 chr1D 87.382 317 22 13 4 309 181431821 181432130 1.650000e-91 348.0
46 TraesCS4A01G170100 chr1D 74.850 167 35 5 7556 7715 288088143 288087977 1.440000e-07 69.4
47 TraesCS4A01G170100 chr5B 84.735 321 30 12 1 309 61552339 61552652 3.620000e-78 303.0
48 TraesCS4A01G170100 chr5B 81.169 308 43 13 2 305 697620847 697620551 4.820000e-57 233.0
49 TraesCS4A01G170100 chr5B 78.289 152 27 6 7835 7985 706021215 706021361 8.540000e-15 93.5
50 TraesCS4A01G170100 chr3D 77.448 572 79 21 7456 7992 598360330 598360886 6.060000e-76 296.0
51 TraesCS4A01G170100 chr3A 78.994 338 55 15 354 684 423373357 423373685 4.860000e-52 217.0
52 TraesCS4A01G170100 chr5D 80.909 220 39 3 7774 7992 399958326 399958109 3.840000e-38 171.0
53 TraesCS4A01G170100 chr5D 81.944 72 11 2 7649 7718 399958586 399958515 8.660000e-05 60.2
54 TraesCS4A01G170100 chr6B 90.323 124 10 2 3200 3321 37718235 37718358 2.310000e-35 161.0
55 TraesCS4A01G170100 chr7D 79.259 135 22 6 7839 7971 616205636 616205506 1.100000e-13 89.8
56 TraesCS4A01G170100 chr2D 77.070 157 26 9 7840 7992 596593827 596593677 1.850000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G170100 chr4A 429428906 429436897 7991 True 14759.000000 14759 100.000000 1 7992 1 chr4A.!!$R1 7991
1 TraesCS4A01G170100 chr4B 163834297 163839950 5653 True 2347.000000 6294 94.316333 1146 7992 3 chr4B.!!$R1 6846
2 TraesCS4A01G170100 chr4D 132774539 132779291 4752 False 3719.000000 6196 95.390500 873 7992 2 chr4D.!!$F2 7119
3 TraesCS4A01G170100 chr4D 211166365 211168109 1744 True 1248.000000 1993 92.925000 1675 3773 2 chr4D.!!$R3 2098
4 TraesCS4A01G170100 chr6A 593280133 593282539 2406 False 4259.000000 4259 98.553000 1636 4051 1 chr6A.!!$F3 2415
5 TraesCS4A01G170100 chr7A 618088161 618089527 1366 True 2316.000000 2316 97.295000 2686 4049 1 chr7A.!!$R1 1363
6 TraesCS4A01G170100 chr7A 618111764 618112836 1072 True 1849.000000 1849 97.765000 1635 2708 1 chr7A.!!$R2 1073
7 TraesCS4A01G170100 chr7A 40675754 40676693 939 True 636.000000 721 88.456500 9 872 2 chr7A.!!$R3 863
8 TraesCS4A01G170100 chr1B 169650461 169653155 2694 False 574.280000 1855 94.952600 1636 3926 5 chr1B.!!$F1 2290
9 TraesCS4A01G170100 chr5A 564389482 564390281 799 False 353.333333 579 91.392333 1 871 3 chr5A.!!$F5 870
10 TraesCS4A01G170100 chr2A 560212475 560212999 524 False 527.000000 527 85.075000 348 872 1 chr2A.!!$F2 524
11 TraesCS4A01G170100 chr6D 276415749 276416622 873 True 483.000000 483 77.333000 2 874 1 chr6D.!!$R1 872
12 TraesCS4A01G170100 chr6D 345311820 345312456 636 True 263.000000 263 74.962000 51 693 1 chr6D.!!$R2 642
13 TraesCS4A01G170100 chr3D 598360330 598360886 556 False 296.000000 296 77.448000 7456 7992 1 chr3D.!!$F1 536

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
724 835 0.036765 TTGGCGCAAGTTCGATACCT 60.037 50.000 10.83 0.00 41.68 3.08 F
768 879 0.308376 GGTGGTTTTCGCGCTGTAAA 59.692 50.000 5.56 2.90 0.00 2.01 F
1164 1277 0.309922 CGAGCTCTAACGGCGGATTA 59.690 55.000 13.24 0.17 34.52 1.75 F
1295 1408 1.428869 TCATTTTGGGGGTGGTTTGG 58.571 50.000 0.00 0.00 0.00 3.28 F
3611 6029 1.000396 GCTTGGGATGCAGAAGGGT 60.000 57.895 0.00 0.00 0.00 4.34 F
4847 7281 0.536006 AAGTTGACTGAGCCTGCACC 60.536 55.000 0.00 0.00 0.00 5.01 F
6194 8634 1.261619 GCTTTGACAGACACAACCTCG 59.738 52.381 0.00 0.00 0.00 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2160 3805 3.901797 CTTTCTCTTGCCGGCCGGT 62.902 63.158 42.53 0.0 37.65 5.28 R
2647 4463 4.590222 AGATGACAGTTTTTGCCTCCAATT 59.410 37.500 0.00 0.0 0.00 2.32 R
2806 5205 4.613437 ACCAATGAGGGCAATATGTTTCT 58.387 39.130 0.00 0.0 43.89 2.52 R
3932 6364 2.083774 GTCCATTTCGCAGATCCAACA 58.916 47.619 0.00 0.0 35.04 3.33 R
6054 8494 1.073319 TGTGGGAACAGGAGGGGAA 60.073 57.895 0.00 0.0 44.46 3.97 R
6910 9353 1.021202 TGAACTGTTCGCCAAAGTGG 58.979 50.000 15.18 0.0 41.55 4.00 R
7614 10077 0.797579 AGGGAGGGAAGGAGGTAACA 59.202 55.000 0.00 0.0 41.41 2.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
107 132 7.885297 TCAAATTCGATGAACTCTTTTTCCAT 58.115 30.769 0.00 0.00 0.00 3.41
300 391 7.148239 ACGAACTTCTTCAGATTTTTGTGAAGT 60.148 33.333 11.24 0.00 46.57 3.01
301 392 7.698130 CGAACTTCTTCAGATTTTTGTGAAGTT 59.302 33.333 15.14 15.14 46.57 2.66
302 393 9.358872 GAACTTCTTCAGATTTTTGTGAAGTTT 57.641 29.630 15.96 5.37 46.57 2.66
303 394 9.710900 AACTTCTTCAGATTTTTGTGAAGTTTT 57.289 25.926 11.01 3.20 46.57 2.43
304 395 9.710900 ACTTCTTCAGATTTTTGTGAAGTTTTT 57.289 25.926 11.24 0.00 46.57 1.94
306 397 9.927668 TTCTTCAGATTTTTGTGAAGTTTTTCT 57.072 25.926 11.24 0.00 46.57 2.52
315 406 7.979115 TTTGTGAAGTTTTTCTAATTCGTGG 57.021 32.000 0.00 0.00 34.31 4.94
316 407 6.687081 TGTGAAGTTTTTCTAATTCGTGGT 57.313 33.333 0.00 0.00 34.31 4.16
317 408 7.090953 TGTGAAGTTTTTCTAATTCGTGGTT 57.909 32.000 0.00 0.00 34.31 3.67
318 409 7.190871 TGTGAAGTTTTTCTAATTCGTGGTTC 58.809 34.615 0.00 0.00 34.31 3.62
319 410 7.066525 TGTGAAGTTTTTCTAATTCGTGGTTCT 59.933 33.333 0.00 0.00 34.31 3.01
320 411 7.913821 GTGAAGTTTTTCTAATTCGTGGTTCTT 59.086 33.333 0.00 0.00 34.31 2.52
321 412 8.463607 TGAAGTTTTTCTAATTCGTGGTTCTTT 58.536 29.630 0.00 0.00 34.31 2.52
322 413 8.851960 AAGTTTTTCTAATTCGTGGTTCTTTC 57.148 30.769 0.00 0.00 0.00 2.62
323 414 8.221965 AGTTTTTCTAATTCGTGGTTCTTTCT 57.778 30.769 0.00 0.00 0.00 2.52
324 415 9.333724 AGTTTTTCTAATTCGTGGTTCTTTCTA 57.666 29.630 0.00 0.00 0.00 2.10
325 416 9.940166 GTTTTTCTAATTCGTGGTTCTTTCTAA 57.060 29.630 0.00 0.00 0.00 2.10
333 424 9.840427 AATTCGTGGTTCTTTCTAAAATATGTG 57.160 29.630 0.00 0.00 0.00 3.21
334 425 7.372451 TCGTGGTTCTTTCTAAAATATGTGG 57.628 36.000 0.00 0.00 0.00 4.17
335 426 7.162761 TCGTGGTTCTTTCTAAAATATGTGGA 58.837 34.615 0.00 0.00 0.00 4.02
336 427 7.118680 TCGTGGTTCTTTCTAAAATATGTGGAC 59.881 37.037 0.00 0.00 0.00 4.02
337 428 7.119262 CGTGGTTCTTTCTAAAATATGTGGACT 59.881 37.037 0.00 0.00 0.00 3.85
338 429 8.793592 GTGGTTCTTTCTAAAATATGTGGACTT 58.206 33.333 0.00 0.00 0.00 3.01
339 430 9.362151 TGGTTCTTTCTAAAATATGTGGACTTT 57.638 29.630 0.00 0.00 0.00 2.66
415 526 9.529325 AAGTCGATGAACTATTTTCAATATCGA 57.471 29.630 0.00 0.00 36.05 3.59
416 527 9.698309 AGTCGATGAACTATTTTCAATATCGAT 57.302 29.630 2.16 2.16 38.70 3.59
449 560 8.728337 TTTGAAAATTGATGACCATTTGTTCA 57.272 26.923 0.00 0.00 0.00 3.18
450 561 8.728337 TTGAAAATTGATGACCATTTGTTCAA 57.272 26.923 0.00 0.00 31.89 2.69
451 562 8.728337 TGAAAATTGATGACCATTTGTTCAAA 57.272 26.923 0.44 0.44 30.81 2.69
452 563 9.170734 TGAAAATTGATGACCATTTGTTCAAAA 57.829 25.926 2.11 0.00 30.81 2.44
455 566 9.953697 AAATTGATGACCATTTGTTCAAAATTG 57.046 25.926 2.11 0.00 30.81 2.32
456 567 8.905660 ATTGATGACCATTTGTTCAAAATTGA 57.094 26.923 2.11 0.00 34.92 2.57
457 568 8.905660 TTGATGACCATTTGTTCAAAATTGAT 57.094 26.923 2.11 0.00 37.00 2.57
458 569 8.312896 TGATGACCATTTGTTCAAAATTGATG 57.687 30.769 2.11 0.00 37.00 3.07
459 570 8.148999 TGATGACCATTTGTTCAAAATTGATGA 58.851 29.630 2.11 0.00 37.00 2.92
460 571 8.905660 ATGACCATTTGTTCAAAATTGATGAA 57.094 26.923 2.11 3.48 37.00 2.57
494 605 9.412390 CAAATTTGTGAACTTCTTTGAAAATCG 57.588 29.630 10.15 0.00 0.00 3.34
495 606 8.925161 AATTTGTGAACTTCTTTGAAAATCGA 57.075 26.923 0.00 0.00 0.00 3.59
496 607 9.533253 AATTTGTGAACTTCTTTGAAAATCGAT 57.467 25.926 0.00 0.00 0.00 3.59
497 608 7.912949 TTGTGAACTTCTTTGAAAATCGATG 57.087 32.000 0.00 0.00 0.00 3.84
498 609 7.258022 TGTGAACTTCTTTGAAAATCGATGA 57.742 32.000 0.00 0.00 0.00 2.92
499 610 7.874940 TGTGAACTTCTTTGAAAATCGATGAT 58.125 30.769 0.00 0.00 0.00 2.45
500 611 8.352201 TGTGAACTTCTTTGAAAATCGATGATT 58.648 29.630 0.00 0.00 33.25 2.57
501 612 9.185192 GTGAACTTCTTTGAAAATCGATGATTT 57.815 29.630 0.00 0.00 43.07 2.17
558 669 9.834628 TTCGTGATGTTTTTAAAATCTATGGAC 57.165 29.630 0.55 0.00 0.00 4.02
559 670 9.004717 TCGTGATGTTTTTAAAATCTATGGACA 57.995 29.630 0.55 1.86 0.00 4.02
560 671 9.787532 CGTGATGTTTTTAAAATCTATGGACAT 57.212 29.630 10.45 10.45 0.00 3.06
575 686 9.643693 ATCTATGGACATTCAAAATTTGTTCAC 57.356 29.630 5.56 0.00 31.91 3.18
576 687 8.637099 TCTATGGACATTCAAAATTTGTTCACA 58.363 29.630 5.56 0.39 31.91 3.58
577 688 9.426837 CTATGGACATTCAAAATTTGTTCACAT 57.573 29.630 5.56 6.99 31.91 3.21
578 689 8.680039 ATGGACATTCAAAATTTGTTCACATT 57.320 26.923 5.56 0.00 31.91 2.71
579 690 8.503458 TGGACATTCAAAATTTGTTCACATTT 57.497 26.923 5.56 0.00 0.00 2.32
580 691 8.610896 TGGACATTCAAAATTTGTTCACATTTC 58.389 29.630 5.56 0.00 0.00 2.17
581 692 8.829612 GGACATTCAAAATTTGTTCACATTTCT 58.170 29.630 5.56 0.00 0.00 2.52
612 723 9.899226 AAGAAGTCATGTTTTTCTAATTAGTGC 57.101 29.630 12.19 1.19 31.30 4.40
613 724 8.230486 AGAAGTCATGTTTTTCTAATTAGTGCG 58.770 33.333 12.19 0.00 29.82 5.34
614 725 6.842163 AGTCATGTTTTTCTAATTAGTGCGG 58.158 36.000 12.19 0.00 0.00 5.69
615 726 5.511729 GTCATGTTTTTCTAATTAGTGCGGC 59.488 40.000 12.19 0.00 0.00 6.53
616 727 5.414454 TCATGTTTTTCTAATTAGTGCGGCT 59.586 36.000 12.19 0.00 0.00 5.52
617 728 6.596106 TCATGTTTTTCTAATTAGTGCGGCTA 59.404 34.615 12.19 0.00 0.00 3.93
618 729 6.995511 TGTTTTTCTAATTAGTGCGGCTAT 57.004 33.333 12.19 0.00 0.00 2.97
619 730 8.556194 CATGTTTTTCTAATTAGTGCGGCTATA 58.444 33.333 12.19 0.00 0.00 1.31
620 731 8.138365 TGTTTTTCTAATTAGTGCGGCTATAG 57.862 34.615 12.19 0.00 0.00 1.31
621 732 7.767198 TGTTTTTCTAATTAGTGCGGCTATAGT 59.233 33.333 12.19 0.00 0.00 2.12
622 733 8.610035 GTTTTTCTAATTAGTGCGGCTATAGTT 58.390 33.333 12.19 0.24 0.00 2.24
623 734 8.726870 TTTTCTAATTAGTGCGGCTATAGTTT 57.273 30.769 12.19 0.00 0.00 2.66
624 735 8.726870 TTTCTAATTAGTGCGGCTATAGTTTT 57.273 30.769 12.19 0.00 0.00 2.43
625 736 7.709269 TCTAATTAGTGCGGCTATAGTTTTG 57.291 36.000 12.19 0.00 0.00 2.44
626 737 5.751243 AATTAGTGCGGCTATAGTTTTGG 57.249 39.130 0.00 0.00 0.00 3.28
627 738 2.781681 AGTGCGGCTATAGTTTTGGT 57.218 45.000 0.00 0.00 0.00 3.67
628 739 3.067684 AGTGCGGCTATAGTTTTGGTT 57.932 42.857 0.00 0.00 0.00 3.67
629 740 3.418047 AGTGCGGCTATAGTTTTGGTTT 58.582 40.909 0.00 0.00 0.00 3.27
630 741 4.581868 AGTGCGGCTATAGTTTTGGTTTA 58.418 39.130 0.00 0.00 0.00 2.01
631 742 5.005094 AGTGCGGCTATAGTTTTGGTTTAA 58.995 37.500 0.00 0.00 0.00 1.52
632 743 5.650703 AGTGCGGCTATAGTTTTGGTTTAAT 59.349 36.000 0.00 0.00 0.00 1.40
633 744 6.824704 AGTGCGGCTATAGTTTTGGTTTAATA 59.175 34.615 0.00 0.00 0.00 0.98
634 745 6.908820 GTGCGGCTATAGTTTTGGTTTAATAC 59.091 38.462 0.00 0.00 0.00 1.89
635 746 6.131389 GCGGCTATAGTTTTGGTTTAATACG 58.869 40.000 0.84 0.00 0.00 3.06
636 747 6.238184 GCGGCTATAGTTTTGGTTTAATACGT 60.238 38.462 0.84 0.00 0.00 3.57
637 748 7.677041 GCGGCTATAGTTTTGGTTTAATACGTT 60.677 37.037 0.00 0.00 0.00 3.99
638 749 8.177013 CGGCTATAGTTTTGGTTTAATACGTTT 58.823 33.333 0.00 0.00 0.00 3.60
639 750 9.494479 GGCTATAGTTTTGGTTTAATACGTTTC 57.506 33.333 0.00 0.00 0.00 2.78
640 751 9.202545 GCTATAGTTTTGGTTTAATACGTTTCG 57.797 33.333 0.00 0.00 0.00 3.46
641 752 9.202545 CTATAGTTTTGGTTTAATACGTTTCGC 57.797 33.333 0.00 0.00 0.00 4.70
657 768 3.473093 TTCGCGTTGAAAACTTTCACA 57.527 38.095 5.77 0.00 46.99 3.58
658 769 3.046285 TCGCGTTGAAAACTTTCACAG 57.954 42.857 5.77 3.65 46.99 3.66
659 770 2.673862 TCGCGTTGAAAACTTTCACAGA 59.326 40.909 5.77 0.58 46.99 3.41
660 771 3.029074 CGCGTTGAAAACTTTCACAGAG 58.971 45.455 4.38 1.06 46.99 3.35
661 772 3.363178 GCGTTGAAAACTTTCACAGAGG 58.637 45.455 4.38 0.00 46.99 3.69
662 773 3.792124 GCGTTGAAAACTTTCACAGAGGG 60.792 47.826 4.38 0.00 46.99 4.30
663 774 3.706698 GTTGAAAACTTTCACAGAGGGC 58.293 45.455 4.38 0.00 45.99 5.19
664 775 3.297134 TGAAAACTTTCACAGAGGGCT 57.703 42.857 0.69 0.00 41.88 5.19
665 776 3.631250 TGAAAACTTTCACAGAGGGCTT 58.369 40.909 0.69 0.00 41.88 4.35
666 777 4.787551 TGAAAACTTTCACAGAGGGCTTA 58.212 39.130 0.69 0.00 41.88 3.09
667 778 5.197451 TGAAAACTTTCACAGAGGGCTTAA 58.803 37.500 0.69 0.00 41.88 1.85
668 779 5.833131 TGAAAACTTTCACAGAGGGCTTAAT 59.167 36.000 0.69 0.00 41.88 1.40
669 780 7.001674 TGAAAACTTTCACAGAGGGCTTAATA 58.998 34.615 0.69 0.00 41.88 0.98
670 781 7.174946 TGAAAACTTTCACAGAGGGCTTAATAG 59.825 37.037 0.69 0.00 41.88 1.73
671 782 7.838670 GAAAACTTTCACAGAGGGCTTAATAGC 60.839 40.741 0.00 0.00 40.52 2.97
672 783 4.226168 ACTTTCACAGAGGGCTTAATAGCT 59.774 41.667 0.00 0.00 46.90 3.32
673 784 4.844349 TTCACAGAGGGCTTAATAGCTT 57.156 40.909 0.00 0.00 46.90 3.74
674 785 4.844349 TCACAGAGGGCTTAATAGCTTT 57.156 40.909 0.00 0.00 46.90 3.51
675 786 5.950544 TCACAGAGGGCTTAATAGCTTTA 57.049 39.130 0.00 0.00 46.90 1.85
676 787 5.671493 TCACAGAGGGCTTAATAGCTTTAC 58.329 41.667 0.00 0.00 46.90 2.01
677 788 5.425539 TCACAGAGGGCTTAATAGCTTTACT 59.574 40.000 0.00 0.00 46.90 2.24
678 789 5.525378 CACAGAGGGCTTAATAGCTTTACTG 59.475 44.000 0.00 0.00 46.90 2.74
679 790 5.059833 CAGAGGGCTTAATAGCTTTACTGG 58.940 45.833 0.00 0.00 46.90 4.00
680 791 4.722279 AGAGGGCTTAATAGCTTTACTGGT 59.278 41.667 0.00 0.00 46.90 4.00
681 792 5.191921 AGAGGGCTTAATAGCTTTACTGGTT 59.808 40.000 0.00 0.00 46.90 3.67
682 793 6.386050 AGAGGGCTTAATAGCTTTACTGGTTA 59.614 38.462 0.00 0.00 46.90 2.85
683 794 6.592870 AGGGCTTAATAGCTTTACTGGTTAG 58.407 40.000 0.00 0.00 46.90 2.34
684 795 5.238868 GGGCTTAATAGCTTTACTGGTTAGC 59.761 44.000 0.00 0.00 46.90 3.09
685 796 5.238868 GGCTTAATAGCTTTACTGGTTAGCC 59.761 44.000 0.00 0.00 46.90 3.93
686 797 5.820947 GCTTAATAGCTTTACTGGTTAGCCA 59.179 40.000 0.00 0.00 44.27 4.75
687 798 6.317893 GCTTAATAGCTTTACTGGTTAGCCAA 59.682 38.462 0.00 0.00 43.43 4.52
688 799 7.467403 GCTTAATAGCTTTACTGGTTAGCCAAG 60.467 40.741 0.00 0.00 43.43 3.61
689 800 2.437413 AGCTTTACTGGTTAGCCAAGC 58.563 47.619 11.02 11.02 45.51 4.01
690 801 2.159382 GCTTTACTGGTTAGCCAAGCA 58.841 47.619 13.40 0.00 45.51 3.91
691 802 2.755103 GCTTTACTGGTTAGCCAAGCAT 59.245 45.455 13.40 0.00 45.51 3.79
692 803 3.428045 GCTTTACTGGTTAGCCAAGCATG 60.428 47.826 13.40 0.00 45.51 4.06
693 804 1.750193 TACTGGTTAGCCAAGCATGC 58.250 50.000 10.51 10.51 45.51 4.06
694 805 1.308069 ACTGGTTAGCCAAGCATGCG 61.308 55.000 13.01 0.00 45.51 4.73
695 806 1.303236 TGGTTAGCCAAGCATGCGT 60.303 52.632 13.01 6.07 42.83 5.24
696 807 0.893270 TGGTTAGCCAAGCATGCGTT 60.893 50.000 13.01 4.25 42.83 4.84
697 808 0.243636 GGTTAGCCAAGCATGCGTTT 59.756 50.000 13.01 0.00 34.09 3.60
698 809 1.470890 GGTTAGCCAAGCATGCGTTTA 59.529 47.619 13.01 0.00 34.09 2.01
699 810 2.094957 GGTTAGCCAAGCATGCGTTTAA 60.095 45.455 13.01 5.11 34.09 1.52
700 811 3.171277 GTTAGCCAAGCATGCGTTTAAG 58.829 45.455 13.01 0.00 0.00 1.85
701 812 0.109132 AGCCAAGCATGCGTTTAAGC 60.109 50.000 13.01 10.71 37.71 3.09
710 821 1.413382 TGCGTTTAAGCAAATTGGCG 58.587 45.000 0.00 0.00 45.06 5.69
711 822 0.092857 GCGTTTAAGCAAATTGGCGC 59.907 50.000 0.00 0.00 39.27 6.53
712 823 1.413382 CGTTTAAGCAAATTGGCGCA 58.587 45.000 10.83 0.00 39.27 6.09
713 824 1.789464 CGTTTAAGCAAATTGGCGCAA 59.211 42.857 10.83 0.00 39.27 4.85
714 825 2.159986 CGTTTAAGCAAATTGGCGCAAG 60.160 45.455 10.83 0.00 39.27 4.01
715 826 2.799978 GTTTAAGCAAATTGGCGCAAGT 59.200 40.909 10.83 0.00 39.27 3.16
716 827 2.810439 TAAGCAAATTGGCGCAAGTT 57.190 40.000 10.83 0.00 39.27 2.66
717 828 1.501169 AAGCAAATTGGCGCAAGTTC 58.499 45.000 10.83 0.00 39.27 3.01
718 829 0.664166 AGCAAATTGGCGCAAGTTCG 60.664 50.000 10.83 0.00 39.27 3.95
719 830 0.662970 GCAAATTGGCGCAAGTTCGA 60.663 50.000 10.83 0.00 41.68 3.71
720 831 1.981254 CAAATTGGCGCAAGTTCGAT 58.019 45.000 10.83 0.00 41.68 3.59
721 832 2.730715 GCAAATTGGCGCAAGTTCGATA 60.731 45.455 10.83 0.00 41.68 2.92
722 833 2.825086 AATTGGCGCAAGTTCGATAC 57.175 45.000 10.83 0.00 41.68 2.24
723 834 1.014352 ATTGGCGCAAGTTCGATACC 58.986 50.000 10.83 0.00 41.68 2.73
724 835 0.036765 TTGGCGCAAGTTCGATACCT 60.037 50.000 10.83 0.00 41.68 3.08
725 836 0.818938 TGGCGCAAGTTCGATACCTA 59.181 50.000 10.83 0.00 41.68 3.08
726 837 1.411246 TGGCGCAAGTTCGATACCTAT 59.589 47.619 10.83 0.00 41.68 2.57
727 838 2.059541 GGCGCAAGTTCGATACCTATC 58.940 52.381 10.83 0.00 41.68 2.08
728 839 2.545113 GGCGCAAGTTCGATACCTATCA 60.545 50.000 10.83 0.00 41.68 2.15
729 840 2.471743 GCGCAAGTTCGATACCTATCAC 59.528 50.000 0.30 0.00 41.68 3.06
730 841 3.702330 CGCAAGTTCGATACCTATCACA 58.298 45.455 0.00 0.00 32.98 3.58
731 842 3.486108 CGCAAGTTCGATACCTATCACAC 59.514 47.826 0.00 0.00 32.98 3.82
732 843 3.486108 GCAAGTTCGATACCTATCACACG 59.514 47.826 0.00 0.00 32.98 4.49
733 844 4.732647 GCAAGTTCGATACCTATCACACGA 60.733 45.833 0.00 0.00 32.98 4.35
734 845 4.815040 AGTTCGATACCTATCACACGAG 57.185 45.455 0.00 0.00 32.98 4.18
735 846 4.449131 AGTTCGATACCTATCACACGAGA 58.551 43.478 0.00 0.00 32.98 4.04
736 847 5.064558 AGTTCGATACCTATCACACGAGAT 58.935 41.667 0.00 0.00 32.98 2.75
737 848 5.179742 AGTTCGATACCTATCACACGAGATC 59.820 44.000 0.00 0.00 32.98 2.75
738 849 3.678548 TCGATACCTATCACACGAGATCG 59.321 47.826 0.00 0.00 37.74 3.69
739 850 3.678548 CGATACCTATCACACGAGATCGA 59.321 47.826 9.58 0.00 37.68 3.59
740 851 4.151867 CGATACCTATCACACGAGATCGAA 59.848 45.833 9.58 0.00 37.68 3.71
741 852 5.163844 CGATACCTATCACACGAGATCGAAT 60.164 44.000 9.58 0.21 37.68 3.34
742 853 4.920640 ACCTATCACACGAGATCGAATT 57.079 40.909 9.58 0.00 43.02 2.17
743 854 5.263968 ACCTATCACACGAGATCGAATTT 57.736 39.130 9.58 0.00 43.02 1.82
744 855 5.661458 ACCTATCACACGAGATCGAATTTT 58.339 37.500 9.58 0.00 43.02 1.82
745 856 6.106673 ACCTATCACACGAGATCGAATTTTT 58.893 36.000 9.58 0.00 43.02 1.94
746 857 6.036083 ACCTATCACACGAGATCGAATTTTTG 59.964 38.462 9.58 0.00 43.02 2.44
747 858 4.065423 TCACACGAGATCGAATTTTTGC 57.935 40.909 9.58 0.00 43.02 3.68
748 859 3.745975 TCACACGAGATCGAATTTTTGCT 59.254 39.130 9.58 0.00 43.02 3.91
749 860 3.842428 CACACGAGATCGAATTTTTGCTG 59.158 43.478 9.58 0.00 43.02 4.41
750 861 3.120199 ACACGAGATCGAATTTTTGCTGG 60.120 43.478 9.58 0.00 43.02 4.85
751 862 3.074412 ACGAGATCGAATTTTTGCTGGT 58.926 40.909 9.58 0.00 43.02 4.00
752 863 3.120199 ACGAGATCGAATTTTTGCTGGTG 60.120 43.478 9.58 0.00 43.02 4.17
753 864 3.728864 CGAGATCGAATTTTTGCTGGTGG 60.729 47.826 0.00 0.00 43.02 4.61
754 865 3.157087 AGATCGAATTTTTGCTGGTGGT 58.843 40.909 0.00 0.00 0.00 4.16
755 866 3.573967 AGATCGAATTTTTGCTGGTGGTT 59.426 39.130 0.00 0.00 0.00 3.67
756 867 3.810310 TCGAATTTTTGCTGGTGGTTT 57.190 38.095 0.00 0.00 0.00 3.27
757 868 4.130286 TCGAATTTTTGCTGGTGGTTTT 57.870 36.364 0.00 0.00 0.00 2.43
758 869 4.116238 TCGAATTTTTGCTGGTGGTTTTC 58.884 39.130 0.00 0.00 0.00 2.29
759 870 3.060607 CGAATTTTTGCTGGTGGTTTTCG 60.061 43.478 0.00 0.00 0.00 3.46
760 871 1.646189 TTTTTGCTGGTGGTTTTCGC 58.354 45.000 0.00 0.00 0.00 4.70
761 872 0.526524 TTTTGCTGGTGGTTTTCGCG 60.527 50.000 0.00 0.00 0.00 5.87
762 873 2.945398 TTTGCTGGTGGTTTTCGCGC 62.945 55.000 0.00 0.00 0.00 6.86
763 874 3.660111 GCTGGTGGTTTTCGCGCT 61.660 61.111 5.56 0.00 0.00 5.92
764 875 2.252260 CTGGTGGTTTTCGCGCTG 59.748 61.111 5.56 0.00 0.00 5.18
765 876 2.515057 TGGTGGTTTTCGCGCTGT 60.515 55.556 5.56 0.00 0.00 4.40
766 877 1.225376 CTGGTGGTTTTCGCGCTGTA 61.225 55.000 5.56 0.00 0.00 2.74
767 878 0.814410 TGGTGGTTTTCGCGCTGTAA 60.814 50.000 5.56 0.00 0.00 2.41
768 879 0.308376 GGTGGTTTTCGCGCTGTAAA 59.692 50.000 5.56 2.90 0.00 2.01
769 880 1.068816 GGTGGTTTTCGCGCTGTAAAT 60.069 47.619 5.56 0.00 0.00 1.40
770 881 2.160022 GGTGGTTTTCGCGCTGTAAATA 59.840 45.455 5.56 0.00 0.00 1.40
771 882 3.158268 GTGGTTTTCGCGCTGTAAATAC 58.842 45.455 5.56 6.04 0.00 1.89
772 883 3.068560 TGGTTTTCGCGCTGTAAATACT 58.931 40.909 5.56 0.00 0.00 2.12
773 884 3.499157 TGGTTTTCGCGCTGTAAATACTT 59.501 39.130 5.56 0.00 0.00 2.24
774 885 4.023878 TGGTTTTCGCGCTGTAAATACTTT 60.024 37.500 5.56 0.00 0.00 2.66
775 886 4.913345 GGTTTTCGCGCTGTAAATACTTTT 59.087 37.500 5.56 0.00 0.00 2.27
776 887 5.400188 GGTTTTCGCGCTGTAAATACTTTTT 59.600 36.000 5.56 0.00 0.00 1.94
777 888 6.578172 GGTTTTCGCGCTGTAAATACTTTTTA 59.422 34.615 5.56 0.00 0.00 1.52
778 889 7.408605 GGTTTTCGCGCTGTAAATACTTTTTAC 60.409 37.037 5.56 2.13 35.91 2.01
779 890 4.873457 TCGCGCTGTAAATACTTTTTACG 58.127 39.130 5.56 0.00 37.62 3.18
780 891 3.472495 CGCGCTGTAAATACTTTTTACGC 59.528 43.478 5.56 0.00 37.62 4.42
781 892 4.644954 GCGCTGTAAATACTTTTTACGCT 58.355 39.130 0.00 0.00 37.62 5.07
782 893 4.490890 GCGCTGTAAATACTTTTTACGCTG 59.509 41.667 0.00 12.39 37.62 5.18
783 894 5.614760 CGCTGTAAATACTTTTTACGCTGT 58.385 37.500 15.70 0.00 37.62 4.40
784 895 5.503376 CGCTGTAAATACTTTTTACGCTGTG 59.497 40.000 15.70 0.00 37.62 3.66
785 896 6.595794 GCTGTAAATACTTTTTACGCTGTGA 58.404 36.000 0.00 0.00 37.62 3.58
786 897 6.736853 GCTGTAAATACTTTTTACGCTGTGAG 59.263 38.462 0.00 3.84 37.62 3.51
787 898 6.595794 TGTAAATACTTTTTACGCTGTGAGC 58.404 36.000 0.00 0.00 37.62 4.26
797 908 1.499056 GCTGTGAGCGTGTTCATGG 59.501 57.895 0.00 0.00 0.00 3.66
798 909 1.915614 GCTGTGAGCGTGTTCATGGG 61.916 60.000 0.00 0.00 0.00 4.00
799 910 1.915614 CTGTGAGCGTGTTCATGGGC 61.916 60.000 0.00 0.00 0.00 5.36
800 911 2.359850 TGAGCGTGTTCATGGGCC 60.360 61.111 0.00 0.00 0.00 5.80
801 912 3.499737 GAGCGTGTTCATGGGCCG 61.500 66.667 0.00 0.00 0.00 6.13
832 943 4.760047 CTGCTGTAGGCGCCCGTT 62.760 66.667 26.15 7.52 45.43 4.44
850 961 2.124736 GCCTCAGTGGGCGCATAA 60.125 61.111 10.83 0.00 42.82 1.90
851 962 2.182842 GCCTCAGTGGGCGCATAAG 61.183 63.158 10.83 4.95 42.82 1.73
852 963 1.524621 CCTCAGTGGGCGCATAAGG 60.525 63.158 10.83 10.42 0.00 2.69
853 964 2.124736 TCAGTGGGCGCATAAGGC 60.125 61.111 10.83 0.00 39.90 4.35
862 973 3.330275 GCATAAGGCGCCCGTTAG 58.670 61.111 26.15 11.16 0.00 2.34
863 974 2.251642 GCATAAGGCGCCCGTTAGG 61.252 63.158 26.15 18.78 39.47 2.69
864 975 1.444250 CATAAGGCGCCCGTTAGGA 59.556 57.895 26.15 0.20 41.02 2.94
865 976 0.600255 CATAAGGCGCCCGTTAGGAG 60.600 60.000 26.15 6.86 41.02 3.69
870 981 4.222847 CGCCCGTTAGGAGCTCCC 62.223 72.222 29.54 13.25 41.02 4.30
871 982 4.222847 GCCCGTTAGGAGCTCCCG 62.223 72.222 29.54 23.87 41.02 5.14
885 996 2.269241 CCCGAGCCAAAGGAGACC 59.731 66.667 0.00 0.00 0.00 3.85
927 1038 2.262915 CAGCTCTTTCCCGCGTCT 59.737 61.111 4.92 0.00 0.00 4.18
1113 1226 0.392998 TCGTCCACCTCTACGGTACC 60.393 60.000 0.16 0.16 46.94 3.34
1164 1277 0.309922 CGAGCTCTAACGGCGGATTA 59.690 55.000 13.24 0.17 34.52 1.75
1268 1381 2.035940 ACGCCCGGCCCAATTAAA 59.964 55.556 3.10 0.00 0.00 1.52
1295 1408 1.428869 TCATTTTGGGGGTGGTTTGG 58.571 50.000 0.00 0.00 0.00 3.28
1299 1412 1.627297 TTTGGGGGTGGTTTGGTTGC 61.627 55.000 0.00 0.00 0.00 4.17
1301 1414 4.293648 GGGGTGGTTTGGTTGCGC 62.294 66.667 0.00 0.00 0.00 6.09
1302 1415 3.223589 GGGTGGTTTGGTTGCGCT 61.224 61.111 9.73 0.00 0.00 5.92
1303 1416 1.899534 GGGTGGTTTGGTTGCGCTA 60.900 57.895 9.73 0.00 0.00 4.26
1341 2660 6.200808 CGCTTATGCATTATGAACACATCAA 58.799 36.000 3.54 0.00 39.49 2.57
1448 2767 1.745653 TGGTTTCGCATGTGTTGACAA 59.254 42.857 6.09 0.00 35.11 3.18
1477 2796 4.408993 TTTTGATCACAATGAGCAGTCG 57.591 40.909 0.00 0.00 44.12 4.18
1490 2809 7.172532 ACAATGAGCAGTCGTTTTGAGTATTTA 59.827 33.333 0.00 0.00 28.67 1.40
1500 2819 7.704047 GTCGTTTTGAGTATTTAGGTAGGTAGG 59.296 40.741 0.00 0.00 0.00 3.18
1501 2820 7.397192 TCGTTTTGAGTATTTAGGTAGGTAGGT 59.603 37.037 0.00 0.00 0.00 3.08
1502 2821 8.037166 CGTTTTGAGTATTTAGGTAGGTAGGTT 58.963 37.037 0.00 0.00 0.00 3.50
2160 3805 1.760029 GAAGGAAACCAAAAGCCACCA 59.240 47.619 0.00 0.00 0.00 4.17
2647 4463 3.291584 TGCTTGTAACCAATGGTGAACA 58.708 40.909 5.34 11.24 35.34 3.18
3611 6029 1.000396 GCTTGGGATGCAGAAGGGT 60.000 57.895 0.00 0.00 0.00 4.34
3932 6364 1.410882 GGATTCGCTCCTGCTTAGTCT 59.589 52.381 0.00 0.00 41.29 3.24
3968 6400 1.092348 GGACGGCCCATACTGTTTTC 58.908 55.000 0.00 0.00 34.14 2.29
4125 6557 3.763360 CCTGCCCATCTTCACAACATAAA 59.237 43.478 0.00 0.00 0.00 1.40
4368 6802 2.027385 GAGGGTGGCCAAGATTTCATC 58.973 52.381 7.24 0.00 0.00 2.92
4383 6817 2.462456 TCATCACTGTGGAGAACTGC 57.538 50.000 8.11 0.00 0.00 4.40
4823 7257 9.161629 TGGATATGTACTTGTGAAAATACTGTG 57.838 33.333 0.00 0.00 0.00 3.66
4847 7281 0.536006 AAGTTGACTGAGCCTGCACC 60.536 55.000 0.00 0.00 0.00 5.01
4875 7309 6.978343 TGGACACAGTAAACATGCTATTAC 57.022 37.500 0.00 0.52 33.25 1.89
4999 7433 7.504911 CCAAAGGAACCAAGAGATATGAATCAT 59.495 37.037 0.00 0.00 34.28 2.45
5030 7464 3.840666 ACTTCAAATAGAGAGGGACAGCA 59.159 43.478 0.00 0.00 0.00 4.41
5450 7884 5.345202 GCATTCTTGAATTCTCAGCAAACTG 59.655 40.000 7.05 0.00 45.95 3.16
5503 7943 7.336396 AGCTTAGGTTATTCCGTAGTTCATTT 58.664 34.615 0.00 0.00 41.99 2.32
5512 7952 9.745880 TTATTCCGTAGTTCATTTGATCTCTAC 57.254 33.333 0.00 0.00 0.00 2.59
5669 8109 5.067023 CCTGAAAGAATGGCTGGAAACTATC 59.933 44.000 0.00 0.00 34.07 2.08
5878 8318 8.599624 ATCAAACCTTTGTCATATTCTTCCAT 57.400 30.769 0.00 0.00 39.18 3.41
6154 8594 4.111577 TCAGTACCTTGAGGATCCCAAAT 58.888 43.478 8.55 6.41 38.94 2.32
6194 8634 1.261619 GCTTTGACAGACACAACCTCG 59.738 52.381 0.00 0.00 0.00 4.63
6797 9237 6.073765 CGTATTGCGAGCTGAAGGTAAATAAT 60.074 38.462 0.00 0.00 44.77 1.28
6802 9245 7.217200 TGCGAGCTGAAGGTAAATAATATCTT 58.783 34.615 0.00 0.00 0.00 2.40
6852 9295 6.424509 TGGTTGAAAAATCATCAGCAATCAAC 59.575 34.615 6.74 6.74 42.71 3.18
6873 9316 6.716628 TCAACTTATGAACAATGCTCCTTTCT 59.283 34.615 0.00 0.00 34.30 2.52
6956 9399 3.165071 CAAAGGTGTAAAGATGGCCCTT 58.835 45.455 0.00 0.00 33.86 3.95
7136 9579 1.775385 TACGATGGATGCAGAGGACA 58.225 50.000 0.00 0.00 0.00 4.02
7145 9588 3.086600 CAGAGGACAGGAGGGGGC 61.087 72.222 0.00 0.00 0.00 5.80
7161 9604 2.297033 GGGGGCTATGTTGCACATATTG 59.703 50.000 8.72 2.17 40.01 1.90
7201 9651 6.106648 AGCTCTTCACTGCATATATAAGCA 57.893 37.500 11.83 11.83 39.25 3.91
7252 9702 7.067372 TCGGTTCCTCGAAGTCTTGTTATAATA 59.933 37.037 0.00 0.00 36.12 0.98
7254 9704 9.374838 GGTTCCTCGAAGTCTTGTTATAATAAA 57.625 33.333 0.00 0.00 0.00 1.40
7388 9839 2.488891 CCCACACAAAGGAATCCTGTGA 60.489 50.000 25.42 0.00 41.22 3.58
7517 9969 2.879233 GCCACCTCCTCCACAACGA 61.879 63.158 0.00 0.00 0.00 3.85
7560 10023 1.697394 CATCCCATCCTGACCCCCA 60.697 63.158 0.00 0.00 0.00 4.96
7575 10038 3.716195 CCATGTCACCCCCGCTCA 61.716 66.667 0.00 0.00 0.00 4.26
7640 10103 1.918957 CTCCTTCCCTCCCTTTGTCAT 59.081 52.381 0.00 0.00 0.00 3.06
7866 10393 0.107165 GCCTGGCCTCCGTTTAGATT 60.107 55.000 7.66 0.00 0.00 2.40
7957 10508 0.526524 GATGGAGGTTCGTCGAGCAG 60.527 60.000 11.35 0.00 0.00 4.24
7960 10511 0.173708 GGAGGTTCGTCGAGCAGATT 59.826 55.000 11.35 0.00 0.00 2.40
7964 10515 0.179171 GTTCGTCGAGCAGATTCGGA 60.179 55.000 4.01 0.00 40.83 4.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
307 398 9.840427 CACATATTTTAGAAAGAACCACGAATT 57.160 29.630 0.00 0.00 0.00 2.17
308 399 8.458843 CCACATATTTTAGAAAGAACCACGAAT 58.541 33.333 0.00 0.00 0.00 3.34
309 400 7.662258 TCCACATATTTTAGAAAGAACCACGAA 59.338 33.333 0.00 0.00 0.00 3.85
310 401 7.118680 GTCCACATATTTTAGAAAGAACCACGA 59.881 37.037 0.00 0.00 0.00 4.35
311 402 7.119262 AGTCCACATATTTTAGAAAGAACCACG 59.881 37.037 0.00 0.00 0.00 4.94
312 403 8.336801 AGTCCACATATTTTAGAAAGAACCAC 57.663 34.615 0.00 0.00 0.00 4.16
313 404 8.934023 AAGTCCACATATTTTAGAAAGAACCA 57.066 30.769 0.00 0.00 0.00 3.67
391 482 9.732893 CATCGATATTGAAAATAGTTCATCGAC 57.267 33.333 12.72 0.00 39.03 4.20
429 540 9.953697 CAATTTTGAACAAATGGTCATCAATTT 57.046 25.926 12.85 3.32 42.02 1.82
430 541 9.339850 TCAATTTTGAACAAATGGTCATCAATT 57.660 25.926 1.35 7.45 42.02 2.32
431 542 8.905660 TCAATTTTGAACAAATGGTCATCAAT 57.094 26.923 1.35 1.85 42.02 2.57
432 543 8.775527 CATCAATTTTGAACAAATGGTCATCAA 58.224 29.630 1.35 0.00 42.02 2.57
433 544 8.148999 TCATCAATTTTGAACAAATGGTCATCA 58.851 29.630 1.35 0.00 42.02 3.07
434 545 8.537049 TCATCAATTTTGAACAAATGGTCATC 57.463 30.769 1.35 0.00 42.02 2.92
435 546 8.905660 TTCATCAATTTTGAACAAATGGTCAT 57.094 26.923 1.35 0.00 42.02 3.06
468 579 9.412390 CGATTTTCAAAGAAGTTCACAAATTTG 57.588 29.630 16.67 16.67 0.00 2.32
469 580 9.364989 TCGATTTTCAAAGAAGTTCACAAATTT 57.635 25.926 5.50 0.00 0.00 1.82
470 581 8.925161 TCGATTTTCAAAGAAGTTCACAAATT 57.075 26.923 5.50 0.00 0.00 1.82
471 582 8.971321 CATCGATTTTCAAAGAAGTTCACAAAT 58.029 29.630 5.50 2.21 0.00 2.32
472 583 8.187480 TCATCGATTTTCAAAGAAGTTCACAAA 58.813 29.630 5.50 0.00 0.00 2.83
473 584 7.702386 TCATCGATTTTCAAAGAAGTTCACAA 58.298 30.769 5.50 0.00 0.00 3.33
474 585 7.258022 TCATCGATTTTCAAAGAAGTTCACA 57.742 32.000 5.50 0.00 0.00 3.58
475 586 8.733857 AATCATCGATTTTCAAAGAAGTTCAC 57.266 30.769 5.50 0.00 0.00 3.18
476 587 9.748708 AAAATCATCGATTTTCAAAGAAGTTCA 57.251 25.926 5.50 0.00 45.45 3.18
532 643 9.834628 GTCCATAGATTTTAAAAACATCACGAA 57.165 29.630 4.44 0.00 0.00 3.85
533 644 9.004717 TGTCCATAGATTTTAAAAACATCACGA 57.995 29.630 4.44 0.00 0.00 4.35
534 645 9.787532 ATGTCCATAGATTTTAAAAACATCACG 57.212 29.630 4.44 0.00 0.00 4.35
549 660 9.643693 GTGAACAAATTTTGAATGTCCATAGAT 57.356 29.630 15.81 0.00 0.00 1.98
550 661 8.637099 TGTGAACAAATTTTGAATGTCCATAGA 58.363 29.630 15.81 0.00 0.00 1.98
551 662 8.815141 TGTGAACAAATTTTGAATGTCCATAG 57.185 30.769 15.81 0.00 0.00 2.23
552 663 9.775854 AATGTGAACAAATTTTGAATGTCCATA 57.224 25.926 15.81 3.60 0.00 2.74
553 664 8.680039 AATGTGAACAAATTTTGAATGTCCAT 57.320 26.923 15.81 6.94 0.00 3.41
554 665 8.503458 AAATGTGAACAAATTTTGAATGTCCA 57.497 26.923 15.81 5.16 0.00 4.02
555 666 8.829612 AGAAATGTGAACAAATTTTGAATGTCC 58.170 29.630 15.81 0.11 0.00 4.02
567 678 9.567848 GACTTCTTTGTAAGAAATGTGAACAAA 57.432 29.630 3.73 0.00 46.13 2.83
568 679 8.735315 TGACTTCTTTGTAAGAAATGTGAACAA 58.265 29.630 3.73 0.00 46.13 2.83
569 680 8.275015 TGACTTCTTTGTAAGAAATGTGAACA 57.725 30.769 3.73 0.00 46.13 3.18
570 681 9.173939 CATGACTTCTTTGTAAGAAATGTGAAC 57.826 33.333 3.73 0.00 46.13 3.18
571 682 8.902806 ACATGACTTCTTTGTAAGAAATGTGAA 58.097 29.630 13.22 0.00 46.13 3.18
572 683 8.450578 ACATGACTTCTTTGTAAGAAATGTGA 57.549 30.769 13.22 2.09 46.13 3.58
573 684 9.520204 AAACATGACTTCTTTGTAAGAAATGTG 57.480 29.630 14.11 8.88 46.13 3.21
586 697 9.899226 GCACTAATTAGAAAAACATGACTTCTT 57.101 29.630 19.38 0.00 31.91 2.52
587 698 8.230486 CGCACTAATTAGAAAAACATGACTTCT 58.770 33.333 19.38 6.81 33.97 2.85
588 699 7.481798 CCGCACTAATTAGAAAAACATGACTTC 59.518 37.037 19.38 0.00 0.00 3.01
589 700 7.305474 CCGCACTAATTAGAAAAACATGACTT 58.695 34.615 19.38 0.00 0.00 3.01
590 701 6.622896 GCCGCACTAATTAGAAAAACATGACT 60.623 38.462 19.38 0.00 0.00 3.41
591 702 5.511729 GCCGCACTAATTAGAAAAACATGAC 59.488 40.000 19.38 1.67 0.00 3.06
592 703 5.414454 AGCCGCACTAATTAGAAAAACATGA 59.586 36.000 19.38 0.00 0.00 3.07
593 704 5.640732 AGCCGCACTAATTAGAAAAACATG 58.359 37.500 19.38 6.11 0.00 3.21
594 705 5.897377 AGCCGCACTAATTAGAAAAACAT 57.103 34.783 19.38 0.00 0.00 2.71
595 706 6.995511 ATAGCCGCACTAATTAGAAAAACA 57.004 33.333 19.38 0.00 33.57 2.83
596 707 8.139521 ACTATAGCCGCACTAATTAGAAAAAC 57.860 34.615 19.38 5.63 33.57 2.43
597 708 8.726870 AACTATAGCCGCACTAATTAGAAAAA 57.273 30.769 19.38 0.00 33.57 1.94
598 709 8.726870 AAACTATAGCCGCACTAATTAGAAAA 57.273 30.769 19.38 0.00 33.57 2.29
599 710 8.609176 CAAAACTATAGCCGCACTAATTAGAAA 58.391 33.333 19.38 0.00 33.57 2.52
600 711 7.225931 CCAAAACTATAGCCGCACTAATTAGAA 59.774 37.037 19.38 0.00 33.57 2.10
601 712 6.704493 CCAAAACTATAGCCGCACTAATTAGA 59.296 38.462 19.38 0.00 33.57 2.10
602 713 6.482308 ACCAAAACTATAGCCGCACTAATTAG 59.518 38.462 11.05 11.05 33.57 1.73
603 714 6.350906 ACCAAAACTATAGCCGCACTAATTA 58.649 36.000 0.00 0.00 33.57 1.40
604 715 5.190677 ACCAAAACTATAGCCGCACTAATT 58.809 37.500 0.00 0.00 33.57 1.40
605 716 4.777463 ACCAAAACTATAGCCGCACTAAT 58.223 39.130 0.00 0.00 33.57 1.73
606 717 4.210724 ACCAAAACTATAGCCGCACTAA 57.789 40.909 0.00 0.00 33.57 2.24
607 718 3.899052 ACCAAAACTATAGCCGCACTA 57.101 42.857 0.00 0.00 34.64 2.74
608 719 2.781681 ACCAAAACTATAGCCGCACT 57.218 45.000 0.00 0.00 0.00 4.40
609 720 3.842732 AAACCAAAACTATAGCCGCAC 57.157 42.857 0.00 0.00 0.00 5.34
610 721 6.238157 CGTATTAAACCAAAACTATAGCCGCA 60.238 38.462 0.00 0.00 0.00 5.69
611 722 6.131389 CGTATTAAACCAAAACTATAGCCGC 58.869 40.000 0.00 0.00 0.00 6.53
612 723 7.237920 ACGTATTAAACCAAAACTATAGCCG 57.762 36.000 0.00 0.00 0.00 5.52
613 724 9.494479 GAAACGTATTAAACCAAAACTATAGCC 57.506 33.333 0.00 0.00 0.00 3.93
614 725 9.202545 CGAAACGTATTAAACCAAAACTATAGC 57.797 33.333 0.00 0.00 0.00 2.97
615 726 9.202545 GCGAAACGTATTAAACCAAAACTATAG 57.797 33.333 0.00 0.00 0.00 1.31
616 727 7.897291 CGCGAAACGTATTAAACCAAAACTATA 59.103 33.333 0.00 0.00 36.87 1.31
617 728 6.737750 CGCGAAACGTATTAAACCAAAACTAT 59.262 34.615 0.00 0.00 36.87 2.12
618 729 6.070196 CGCGAAACGTATTAAACCAAAACTA 58.930 36.000 0.00 0.00 36.87 2.24
619 730 4.905295 CGCGAAACGTATTAAACCAAAACT 59.095 37.500 0.00 0.00 36.87 2.66
620 731 5.150692 CGCGAAACGTATTAAACCAAAAC 57.849 39.130 0.00 0.00 36.87 2.43
633 744 3.667430 TGAAAGTTTTCAACGCGAAACGT 60.667 39.130 15.93 8.52 45.51 3.99
634 745 2.841329 TGAAAGTTTTCAACGCGAAACG 59.159 40.909 15.93 0.00 43.35 3.60
644 755 3.297134 AGCCCTCTGTGAAAGTTTTCA 57.703 42.857 3.28 3.28 44.31 2.69
645 756 5.767816 TTAAGCCCTCTGTGAAAGTTTTC 57.232 39.130 0.00 0.00 37.69 2.29
646 757 6.071896 GCTATTAAGCCCTCTGTGAAAGTTTT 60.072 38.462 0.00 0.00 43.40 2.43
647 758 5.416013 GCTATTAAGCCCTCTGTGAAAGTTT 59.584 40.000 0.00 0.00 43.40 2.66
648 759 4.944317 GCTATTAAGCCCTCTGTGAAAGTT 59.056 41.667 0.00 0.00 43.40 2.66
649 760 4.518249 GCTATTAAGCCCTCTGTGAAAGT 58.482 43.478 0.00 0.00 43.40 2.66
659 770 9.749125 GGCTAACCAGTAAAGCTATTAAGCCCT 62.749 44.444 0.00 0.00 42.46 5.19
660 771 7.682611 GGCTAACCAGTAAAGCTATTAAGCCC 61.683 46.154 0.00 0.00 42.46 5.19
661 772 5.238868 GGCTAACCAGTAAAGCTATTAAGCC 59.761 44.000 0.00 0.00 42.46 4.35
662 773 5.820947 TGGCTAACCAGTAAAGCTATTAAGC 59.179 40.000 0.00 0.00 45.22 3.09
678 789 0.243636 AAACGCATGCTTGGCTAACC 59.756 50.000 17.13 0.00 0.00 2.85
679 790 2.911819 TAAACGCATGCTTGGCTAAC 57.088 45.000 17.13 0.00 0.00 2.34
680 791 2.415357 GCTTAAACGCATGCTTGGCTAA 60.415 45.455 17.13 5.01 0.00 3.09
681 792 1.132262 GCTTAAACGCATGCTTGGCTA 59.868 47.619 17.13 0.00 0.00 3.93
682 793 0.109132 GCTTAAACGCATGCTTGGCT 60.109 50.000 17.13 0.00 0.00 4.75
683 794 0.388391 TGCTTAAACGCATGCTTGGC 60.388 50.000 17.13 12.83 34.44 4.52
684 795 2.063156 TTGCTTAAACGCATGCTTGG 57.937 45.000 17.13 2.44 40.04 3.61
685 796 4.387936 CAATTTGCTTAAACGCATGCTTG 58.612 39.130 17.13 3.27 40.04 4.01
686 797 3.432933 CCAATTTGCTTAAACGCATGCTT 59.567 39.130 17.13 2.67 40.04 3.91
687 798 2.995258 CCAATTTGCTTAAACGCATGCT 59.005 40.909 17.13 0.00 40.04 3.79
688 799 2.474361 GCCAATTTGCTTAAACGCATGC 60.474 45.455 7.91 7.91 40.04 4.06
689 800 2.222552 CGCCAATTTGCTTAAACGCATG 60.223 45.455 0.00 0.00 40.04 4.06
690 801 1.991965 CGCCAATTTGCTTAAACGCAT 59.008 42.857 0.00 0.00 40.04 4.73
691 802 1.413382 CGCCAATTTGCTTAAACGCA 58.587 45.000 0.00 0.00 38.31 5.24
692 803 0.092857 GCGCCAATTTGCTTAAACGC 59.907 50.000 0.00 0.00 38.17 4.84
693 804 1.413382 TGCGCCAATTTGCTTAAACG 58.587 45.000 4.18 0.00 0.00 3.60
694 805 2.799978 ACTTGCGCCAATTTGCTTAAAC 59.200 40.909 4.18 0.00 0.00 2.01
695 806 3.104843 ACTTGCGCCAATTTGCTTAAA 57.895 38.095 4.18 0.00 0.00 1.52
696 807 2.810439 ACTTGCGCCAATTTGCTTAA 57.190 40.000 4.18 0.00 0.00 1.85
697 808 2.671596 GAACTTGCGCCAATTTGCTTA 58.328 42.857 4.18 0.00 0.00 3.09
698 809 1.501169 GAACTTGCGCCAATTTGCTT 58.499 45.000 4.18 0.00 0.00 3.91
699 810 0.664166 CGAACTTGCGCCAATTTGCT 60.664 50.000 4.18 0.00 0.00 3.91
700 811 0.662970 TCGAACTTGCGCCAATTTGC 60.663 50.000 4.18 0.00 0.00 3.68
701 812 1.981254 ATCGAACTTGCGCCAATTTG 58.019 45.000 4.18 0.00 0.00 2.32
702 813 2.159435 GGTATCGAACTTGCGCCAATTT 60.159 45.455 4.18 0.00 0.00 1.82
703 814 1.400494 GGTATCGAACTTGCGCCAATT 59.600 47.619 4.18 0.00 0.00 2.32
704 815 1.014352 GGTATCGAACTTGCGCCAAT 58.986 50.000 4.18 0.00 0.00 3.16
705 816 0.036765 AGGTATCGAACTTGCGCCAA 60.037 50.000 4.18 0.00 0.00 4.52
706 817 0.818938 TAGGTATCGAACTTGCGCCA 59.181 50.000 4.18 0.00 0.00 5.69
707 818 2.059541 GATAGGTATCGAACTTGCGCC 58.940 52.381 4.18 0.00 0.00 6.53
708 819 2.471743 GTGATAGGTATCGAACTTGCGC 59.528 50.000 0.00 0.00 35.48 6.09
709 820 3.486108 GTGTGATAGGTATCGAACTTGCG 59.514 47.826 0.00 0.00 35.48 4.85
710 821 3.486108 CGTGTGATAGGTATCGAACTTGC 59.514 47.826 0.00 0.00 35.48 4.01
711 822 4.916870 TCGTGTGATAGGTATCGAACTTG 58.083 43.478 0.00 0.00 35.48 3.16
712 823 4.880120 TCTCGTGTGATAGGTATCGAACTT 59.120 41.667 0.00 0.00 35.48 2.66
713 824 4.449131 TCTCGTGTGATAGGTATCGAACT 58.551 43.478 0.00 0.00 35.48 3.01
714 825 4.808077 TCTCGTGTGATAGGTATCGAAC 57.192 45.455 0.00 0.00 35.48 3.95
715 826 4.151867 CGATCTCGTGTGATAGGTATCGAA 59.848 45.833 0.00 0.00 35.36 3.71
716 827 3.678548 CGATCTCGTGTGATAGGTATCGA 59.321 47.826 0.00 0.00 35.36 3.59
717 828 3.678548 TCGATCTCGTGTGATAGGTATCG 59.321 47.826 0.00 0.00 40.80 2.92
718 829 5.608676 TTCGATCTCGTGTGATAGGTATC 57.391 43.478 0.00 0.00 40.80 2.24
719 830 6.576662 AATTCGATCTCGTGTGATAGGTAT 57.423 37.500 0.00 0.00 40.80 2.73
720 831 6.387041 AAATTCGATCTCGTGTGATAGGTA 57.613 37.500 0.00 0.00 40.80 3.08
721 832 4.920640 AATTCGATCTCGTGTGATAGGT 57.079 40.909 0.00 0.00 40.80 3.08
722 833 6.414079 CAAAAATTCGATCTCGTGTGATAGG 58.586 40.000 0.00 0.00 40.80 2.57
723 834 5.898606 GCAAAAATTCGATCTCGTGTGATAG 59.101 40.000 0.00 0.00 40.80 2.08
724 835 5.580691 AGCAAAAATTCGATCTCGTGTGATA 59.419 36.000 0.00 0.00 40.80 2.15
725 836 4.393062 AGCAAAAATTCGATCTCGTGTGAT 59.607 37.500 0.00 0.00 40.80 3.06
726 837 3.745975 AGCAAAAATTCGATCTCGTGTGA 59.254 39.130 0.00 0.00 40.80 3.58
727 838 3.842428 CAGCAAAAATTCGATCTCGTGTG 59.158 43.478 0.00 0.00 40.80 3.82
728 839 3.120199 CCAGCAAAAATTCGATCTCGTGT 60.120 43.478 0.00 0.00 40.80 4.49
729 840 3.120199 ACCAGCAAAAATTCGATCTCGTG 60.120 43.478 0.00 0.00 40.80 4.35
730 841 3.074412 ACCAGCAAAAATTCGATCTCGT 58.926 40.909 0.00 0.00 40.80 4.18
731 842 3.419915 CACCAGCAAAAATTCGATCTCG 58.580 45.455 0.00 0.00 41.45 4.04
732 843 3.191371 ACCACCAGCAAAAATTCGATCTC 59.809 43.478 0.00 0.00 0.00 2.75
733 844 3.157087 ACCACCAGCAAAAATTCGATCT 58.843 40.909 0.00 0.00 0.00 2.75
734 845 3.575965 ACCACCAGCAAAAATTCGATC 57.424 42.857 0.00 0.00 0.00 3.69
735 846 4.335400 AAACCACCAGCAAAAATTCGAT 57.665 36.364 0.00 0.00 0.00 3.59
736 847 3.810310 AAACCACCAGCAAAAATTCGA 57.190 38.095 0.00 0.00 0.00 3.71
737 848 3.060607 CGAAAACCACCAGCAAAAATTCG 60.061 43.478 0.00 0.00 0.00 3.34
738 849 3.303066 GCGAAAACCACCAGCAAAAATTC 60.303 43.478 0.00 0.00 0.00 2.17
739 850 2.611751 GCGAAAACCACCAGCAAAAATT 59.388 40.909 0.00 0.00 0.00 1.82
740 851 2.209273 GCGAAAACCACCAGCAAAAAT 58.791 42.857 0.00 0.00 0.00 1.82
741 852 1.646189 GCGAAAACCACCAGCAAAAA 58.354 45.000 0.00 0.00 0.00 1.94
742 853 0.526524 CGCGAAAACCACCAGCAAAA 60.527 50.000 0.00 0.00 0.00 2.44
743 854 1.064946 CGCGAAAACCACCAGCAAA 59.935 52.632 0.00 0.00 0.00 3.68
744 855 2.718731 CGCGAAAACCACCAGCAA 59.281 55.556 0.00 0.00 0.00 3.91
745 856 3.959975 GCGCGAAAACCACCAGCA 61.960 61.111 12.10 0.00 0.00 4.41
746 857 3.660111 AGCGCGAAAACCACCAGC 61.660 61.111 12.10 0.00 0.00 4.85
747 858 1.225376 TACAGCGCGAAAACCACCAG 61.225 55.000 12.10 0.00 0.00 4.00
748 859 0.814410 TTACAGCGCGAAAACCACCA 60.814 50.000 12.10 0.00 0.00 4.17
749 860 0.308376 TTTACAGCGCGAAAACCACC 59.692 50.000 12.10 0.00 0.00 4.61
750 861 2.325509 ATTTACAGCGCGAAAACCAC 57.674 45.000 12.10 0.00 0.00 4.16
751 862 3.068560 AGTATTTACAGCGCGAAAACCA 58.931 40.909 12.10 0.00 0.00 3.67
752 863 3.734776 AGTATTTACAGCGCGAAAACC 57.265 42.857 12.10 0.00 0.00 3.27
753 864 6.428673 AAAAAGTATTTACAGCGCGAAAAC 57.571 33.333 12.10 3.10 37.28 2.43
754 865 6.300434 CGTAAAAAGTATTTACAGCGCGAAAA 59.700 34.615 12.10 4.42 37.28 2.29
755 866 5.784625 CGTAAAAAGTATTTACAGCGCGAAA 59.215 36.000 12.10 0.58 37.28 3.46
756 867 5.307368 CGTAAAAAGTATTTACAGCGCGAA 58.693 37.500 12.10 0.00 37.28 4.70
757 868 4.721785 GCGTAAAAAGTATTTACAGCGCGA 60.722 41.667 12.10 0.00 37.28 5.87
758 869 3.472495 GCGTAAAAAGTATTTACAGCGCG 59.528 43.478 0.00 0.00 37.28 6.86
759 870 4.490890 CAGCGTAAAAAGTATTTACAGCGC 59.509 41.667 0.00 0.00 37.28 5.92
760 871 5.503376 CACAGCGTAAAAAGTATTTACAGCG 59.497 40.000 10.60 11.50 37.28 5.18
761 872 6.595794 TCACAGCGTAAAAAGTATTTACAGC 58.404 36.000 10.60 12.67 37.28 4.40
762 873 6.736853 GCTCACAGCGTAAAAAGTATTTACAG 59.263 38.462 10.60 5.65 37.28 2.74
763 874 6.595794 GCTCACAGCGTAAAAAGTATTTACA 58.404 36.000 10.60 0.00 37.28 2.41
779 890 1.499056 CCATGAACACGCTCACAGC 59.501 57.895 0.00 0.00 38.02 4.40
780 891 1.915614 GCCCATGAACACGCTCACAG 61.916 60.000 0.00 0.00 0.00 3.66
781 892 1.965930 GCCCATGAACACGCTCACA 60.966 57.895 0.00 0.00 0.00 3.58
782 893 2.690778 GGCCCATGAACACGCTCAC 61.691 63.158 0.00 0.00 0.00 3.51
783 894 2.359850 GGCCCATGAACACGCTCA 60.360 61.111 0.00 0.00 0.00 4.26
784 895 3.499737 CGGCCCATGAACACGCTC 61.500 66.667 0.00 0.00 0.00 5.03
815 926 4.760047 AACGGGCGCCTACAGCAG 62.760 66.667 28.56 11.32 44.04 4.24
834 945 1.524621 CCTTATGCGCCCACTGAGG 60.525 63.158 4.18 0.00 37.03 3.86
835 946 2.182842 GCCTTATGCGCCCACTGAG 61.183 63.158 4.18 0.00 0.00 3.35
836 947 2.124736 GCCTTATGCGCCCACTGA 60.125 61.111 4.18 0.00 0.00 3.41
845 956 2.251642 CCTAACGGGCGCCTTATGC 61.252 63.158 28.56 8.15 0.00 3.14
846 957 0.600255 CTCCTAACGGGCGCCTTATG 60.600 60.000 28.56 14.67 34.39 1.90
847 958 1.746517 CTCCTAACGGGCGCCTTAT 59.253 57.895 28.56 14.83 34.39 1.73
848 959 3.085119 GCTCCTAACGGGCGCCTTA 62.085 63.158 28.56 16.97 39.73 2.69
849 960 4.468689 GCTCCTAACGGGCGCCTT 62.469 66.667 28.56 16.71 39.73 4.35
851 962 4.893601 GAGCTCCTAACGGGCGCC 62.894 72.222 21.18 21.18 46.27 6.53
852 963 4.893601 GGAGCTCCTAACGGGCGC 62.894 72.222 26.25 0.00 45.51 6.53
853 964 4.222847 GGGAGCTCCTAACGGGCG 62.223 72.222 31.36 0.00 35.95 6.13
854 965 4.222847 CGGGAGCTCCTAACGGGC 62.223 72.222 31.36 12.50 35.95 6.13
855 966 2.441532 TCGGGAGCTCCTAACGGG 60.442 66.667 31.36 13.98 35.95 5.28
856 967 3.121019 CTCGGGAGCTCCTAACGG 58.879 66.667 31.36 16.00 35.95 4.44
866 977 1.219393 GTCTCCTTTGGCTCGGGAG 59.781 63.158 11.85 11.85 45.65 4.30
867 978 2.291043 GGTCTCCTTTGGCTCGGGA 61.291 63.158 0.00 0.00 0.00 5.14
868 979 2.269241 GGTCTCCTTTGGCTCGGG 59.731 66.667 0.00 0.00 0.00 5.14
869 980 2.125512 CGGTCTCCTTTGGCTCGG 60.126 66.667 0.00 0.00 0.00 4.63
870 981 2.815647 GCGGTCTCCTTTGGCTCG 60.816 66.667 0.00 0.00 0.00 5.03
871 982 2.815647 CGCGGTCTCCTTTGGCTC 60.816 66.667 0.00 0.00 0.00 4.70
927 1038 1.679977 CTAACGTCGGTGAGGGGGA 60.680 63.158 0.00 0.00 0.00 4.81
1268 1381 2.905736 CACCCCCAAAATGAAATGGTCT 59.094 45.455 0.00 0.00 34.79 3.85
1295 1408 2.221981 GCATTGATCCTAGTAGCGCAAC 59.778 50.000 11.47 0.00 0.00 4.17
1299 1412 1.702886 CGGCATTGATCCTAGTAGCG 58.297 55.000 0.00 0.00 0.00 4.26
1301 1414 3.393089 AAGCGGCATTGATCCTAGTAG 57.607 47.619 1.45 0.00 0.00 2.57
1302 1415 4.820897 CATAAGCGGCATTGATCCTAGTA 58.179 43.478 1.45 0.00 0.00 1.82
1303 1416 3.668447 CATAAGCGGCATTGATCCTAGT 58.332 45.455 1.45 0.00 0.00 2.57
1341 2660 5.752955 AGTTTTTCATGCGCAAATAACAAGT 59.247 32.000 17.11 8.51 0.00 3.16
1448 2767 6.127563 TGCTCATTGTGATCAAAATGCAGTAT 60.128 34.615 27.39 0.00 37.11 2.12
1477 2796 9.159364 CAACCTACCTACCTAAATACTCAAAAC 57.841 37.037 0.00 0.00 0.00 2.43
1490 2809 1.972795 TCGCAAACAACCTACCTACCT 59.027 47.619 0.00 0.00 0.00 3.08
1500 2819 3.190535 ACACCTTCCATATCGCAAACAAC 59.809 43.478 0.00 0.00 0.00 3.32
1501 2820 3.417101 ACACCTTCCATATCGCAAACAA 58.583 40.909 0.00 0.00 0.00 2.83
1502 2821 3.066291 ACACCTTCCATATCGCAAACA 57.934 42.857 0.00 0.00 0.00 2.83
1558 2877 6.578023 CCCACTAAAATGGTCAAAACAGAAA 58.422 36.000 0.00 0.00 38.16 2.52
1615 2934 7.838884 ACTAGTTAGGAGAAGTACACCAATTC 58.161 38.462 0.00 0.00 0.00 2.17
2160 3805 3.901797 CTTTCTCTTGCCGGCCGGT 62.902 63.158 42.53 0.00 37.65 5.28
2647 4463 4.590222 AGATGACAGTTTTTGCCTCCAATT 59.410 37.500 0.00 0.00 0.00 2.32
2806 5205 4.613437 ACCAATGAGGGCAATATGTTTCT 58.387 39.130 0.00 0.00 43.89 2.52
3932 6364 2.083774 GTCCATTTCGCAGATCCAACA 58.916 47.619 0.00 0.00 35.04 3.33
3968 6400 1.200020 GTTCCCGCCAAACTTCATCTG 59.800 52.381 0.00 0.00 0.00 2.90
4125 6557 4.511527 CATACTGAGCAGGTTTCACTGAT 58.488 43.478 2.20 0.00 40.97 2.90
4368 6802 2.320587 GCCGCAGTTCTCCACAGTG 61.321 63.158 0.00 0.00 0.00 3.66
4383 6817 2.046313 GCAGCAATAAAATCATCGCCG 58.954 47.619 0.00 0.00 0.00 6.46
4823 7257 2.675348 GCAGGCTCAGTCAACTTATGTC 59.325 50.000 0.00 0.00 0.00 3.06
4847 7281 4.883585 AGCATGTTTACTGTGTCCATATGG 59.116 41.667 16.25 16.25 0.00 2.74
4965 7399 2.838637 TGGTTCCTTTGGTCACCTTT 57.161 45.000 0.00 0.00 31.46 3.11
4999 7433 6.467677 CCTCTCTATTTGAAGTTGGAGTTGA 58.532 40.000 0.00 0.00 0.00 3.18
5030 7464 4.326826 TCTCTTCCGAAGACATGCATTTT 58.673 39.130 6.75 0.00 33.12 1.82
5338 7772 3.275143 CACAACAACAGTAACACCTGGA 58.725 45.455 0.00 0.00 36.75 3.86
5733 8173 9.575868 AATAATAGAAGTACTGATCTCGGAAGA 57.424 33.333 0.00 0.00 39.12 2.87
6054 8494 1.073319 TGTGGGAACAGGAGGGGAA 60.073 57.895 0.00 0.00 44.46 3.97
6154 8594 3.583086 AGCTCCTCTTAAGTACCAAAGCA 59.417 43.478 1.63 0.00 0.00 3.91
6194 8634 3.375299 GTCTTGCCAATCACCATGTAGTC 59.625 47.826 0.00 0.00 0.00 2.59
6463 8903 1.359848 GTACCACATCAGGCTTGTCG 58.640 55.000 0.00 0.00 0.00 4.35
6797 9237 6.313905 GCTCTGCACTTTTAGTTAGCAAGATA 59.686 38.462 0.00 0.00 34.45 1.98
6802 9245 3.738982 TGCTCTGCACTTTTAGTTAGCA 58.261 40.909 0.00 0.00 36.45 3.49
6817 9260 3.799281 TTTTTCAACCACCTTGCTCTG 57.201 42.857 0.00 0.00 0.00 3.35
6852 9295 7.543520 GGAAAAGAAAGGAGCATTGTTCATAAG 59.456 37.037 2.83 0.00 0.00 1.73
6873 9316 1.138069 TGCGACACTCAGTCTGGAAAA 59.862 47.619 0.00 0.00 45.32 2.29
6910 9353 1.021202 TGAACTGTTCGCCAAAGTGG 58.979 50.000 15.18 0.00 41.55 4.00
6956 9399 1.679311 GACAGATGTCACAGGGGCA 59.321 57.895 8.09 0.00 44.18 5.36
7136 9579 1.619363 TGCAACATAGCCCCCTCCT 60.619 57.895 0.00 0.00 0.00 3.69
7161 9604 7.226918 GTGAAGAGCTATAAGGTAAAATCCCAC 59.773 40.741 0.00 0.00 0.00 4.61
7201 9651 5.872963 AGGAGAAACATAAAAGGGTTACGT 58.127 37.500 0.00 0.00 0.00 3.57
7252 9702 6.619801 AATCAGCTCTTAACGTCTTGTTTT 57.380 33.333 0.00 0.00 42.09 2.43
7254 9704 6.128526 GCTTAATCAGCTCTTAACGTCTTGTT 60.129 38.462 0.00 0.00 46.27 2.83
7388 9839 5.562696 CGTTTGTTTGCATGTTAGTGGAGAT 60.563 40.000 0.00 0.00 0.00 2.75
7517 9969 3.571590 AGAGGATTACGGATCTGCTCTT 58.428 45.455 0.00 0.00 32.65 2.85
7560 10023 3.402681 CCTGAGCGGGGGTGACAT 61.403 66.667 0.00 0.00 0.00 3.06
7575 10038 2.521708 GCACCACCCAAGTTGCCT 60.522 61.111 0.00 0.00 0.00 4.75
7613 10076 1.369983 AGGGAGGGAAGGAGGTAACAT 59.630 52.381 0.00 0.00 41.41 2.71
7614 10077 0.797579 AGGGAGGGAAGGAGGTAACA 59.202 55.000 0.00 0.00 41.41 2.41
7859 10386 3.278574 CACCGGCCAGATCAAATCTAAA 58.721 45.455 0.00 0.00 37.58 1.85
7866 10393 4.776322 CCGCACCGGCCAGATCAA 62.776 66.667 0.00 0.00 41.17 2.57
7904 10431 2.060980 GGGACCGCCACTGATCTCT 61.061 63.158 0.00 0.00 35.15 3.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.