Multiple sequence alignment - TraesCS4A01G166900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G166900 chr4A 100.000 4083 0 0 1 4083 409034572 409038654 0.000000e+00 7540.0
1 TraesCS4A01G166900 chr4A 92.126 127 9 1 3330 3455 503953789 503953915 1.170000e-40 178.0
2 TraesCS4A01G166900 chr4D 94.944 2591 82 18 769 3333 179312222 179314789 0.000000e+00 4013.0
3 TraesCS4A01G166900 chr4D 88.908 595 57 5 1 588 179120489 179121081 0.000000e+00 725.0
4 TraesCS4A01G166900 chr4D 92.471 425 28 4 3655 4077 179314786 179315208 4.510000e-169 604.0
5 TraesCS4A01G166900 chr4D 88.535 157 16 2 3503 3657 493262153 493262309 5.390000e-44 189.0
6 TraesCS4A01G166900 chr4D 92.913 127 8 1 3330 3455 62507519 62507393 2.510000e-42 183.0
7 TraesCS4A01G166900 chr4B 94.359 2588 93 18 765 3333 199189941 199192494 0.000000e+00 3921.0
8 TraesCS4A01G166900 chr4B 88.685 654 68 2 1 650 199146584 199147235 0.000000e+00 793.0
9 TraesCS4A01G166900 chr4B 92.727 110 5 3 3784 3891 199208471 199208579 5.460000e-34 156.0
10 TraesCS4A01G166900 chr4B 97.561 41 1 0 3457 3497 383056145 383056185 2.040000e-08 71.3
11 TraesCS4A01G166900 chr2B 93.791 306 19 0 1043 1348 180423772 180423467 1.030000e-125 460.0
12 TraesCS4A01G166900 chr2B 80.194 515 85 12 2106 2615 180421914 180421412 1.790000e-98 370.0
13 TraesCS4A01G166900 chr2B 87.654 162 17 3 3498 3658 137858418 137858577 6.970000e-43 185.0
14 TraesCS4A01G166900 chr2B 97.561 41 1 0 3457 3497 299711235 299711195 2.040000e-08 71.3
15 TraesCS4A01G166900 chr2D 93.464 306 20 0 1043 1348 126739431 126739126 4.810000e-124 455.0
16 TraesCS4A01G166900 chr2D 80.583 515 83 12 2106 2615 126737678 126737176 8.280000e-102 381.0
17 TraesCS4A01G166900 chr2D 85.762 302 39 4 2736 3035 628412146 628412445 2.370000e-82 316.0
18 TraesCS4A01G166900 chr2D 100.000 32 0 0 626 657 261736684 261736653 4.410000e-05 60.2
19 TraesCS4A01G166900 chr3D 92.880 309 20 2 1044 1351 412786139 412785832 8.050000e-122 448.0
20 TraesCS4A01G166900 chr3D 86.424 302 38 3 2736 3035 412785189 412784889 1.090000e-85 327.0
21 TraesCS4A01G166900 chr3D 92.126 127 9 1 3330 3455 610303822 610303948 1.170000e-40 178.0
22 TraesCS4A01G166900 chr3D 91.339 127 10 1 3333 3458 69622010 69621884 5.430000e-39 172.0
23 TraesCS4A01G166900 chr3D 86.885 61 7 1 599 659 89205585 89205526 2.630000e-07 67.6
24 TraesCS4A01G166900 chr3B 93.137 306 19 2 1044 1348 539561499 539561195 8.050000e-122 448.0
25 TraesCS4A01G166900 chr3B 86.424 302 38 3 2736 3035 539560564 539560264 1.090000e-85 327.0
26 TraesCS4A01G166900 chr3B 83.828 303 44 5 2736 3035 243089706 243089406 2.400000e-72 283.0
27 TraesCS4A01G166900 chr3B 82.927 82 12 2 578 659 138492850 138492771 5.660000e-09 73.1
28 TraesCS4A01G166900 chr2A 92.810 306 22 0 1043 1348 133346363 133346058 1.040000e-120 444.0
29 TraesCS4A01G166900 chr2A 80.000 515 86 13 2106 2615 133344675 133344173 8.340000e-97 364.0
30 TraesCS4A01G166900 chr2A 84.768 302 39 5 2736 3035 616455461 616455165 3.090000e-76 296.0
31 TraesCS4A01G166900 chr2A 92.126 127 9 1 3330 3455 73453239 73453365 1.170000e-40 178.0
32 TraesCS4A01G166900 chr2A 83.838 99 13 3 560 657 311056628 311056724 1.560000e-14 91.6
33 TraesCS4A01G166900 chr3A 92.131 305 24 0 1044 1348 537507638 537507942 8.110000e-117 431.0
34 TraesCS4A01G166900 chr3A 85.762 302 40 3 2736 3035 537508547 537508847 2.370000e-82 316.0
35 TraesCS4A01G166900 chr3A 83.838 99 13 3 560 657 408945573 408945669 1.560000e-14 91.6
36 TraesCS4A01G166900 chr5B 84.437 302 43 4 2736 3035 139002632 139002931 1.110000e-75 294.0
37 TraesCS4A01G166900 chr5B 82.222 90 15 1 570 659 686419803 686419891 4.380000e-10 76.8
38 TraesCS4A01G166900 chr5B 97.561 41 1 0 3457 3497 14068519 14068479 2.040000e-08 71.3
39 TraesCS4A01G166900 chr5B 97.561 41 1 0 3457 3497 107033545 107033585 2.040000e-08 71.3
40 TraesCS4A01G166900 chr5B 97.561 41 1 0 3457 3497 197757727 197757687 2.040000e-08 71.3
41 TraesCS4A01G166900 chr6A 84.106 302 41 5 2736 3035 518074749 518074453 6.680000e-73 285.0
42 TraesCS4A01G166900 chr6A 88.272 162 16 3 3500 3658 448058470 448058631 1.500000e-44 191.0
43 TraesCS4A01G166900 chr6A 82.828 99 14 3 560 657 64251877 64251973 7.270000e-13 86.1
44 TraesCS4A01G166900 chr6A 79.130 115 20 4 544 657 431988085 431987974 4.380000e-10 76.8
45 TraesCS4A01G166900 chr5A 84.106 302 41 5 2736 3035 109668498 109668794 6.680000e-73 285.0
46 TraesCS4A01G166900 chr5A 88.462 156 16 2 3503 3656 70709681 70709526 1.940000e-43 187.0
47 TraesCS4A01G166900 chr5A 92.126 127 9 1 3333 3458 332587980 332587854 1.170000e-40 178.0
48 TraesCS4A01G166900 chr5A 86.869 99 10 3 560 657 690404808 690404904 1.550000e-19 108.0
49 TraesCS4A01G166900 chr5A 82.828 99 14 3 560 657 321890980 321891076 7.270000e-13 86.1
50 TraesCS4A01G166900 chr5A 81.731 104 16 3 555 657 616146352 616146453 2.620000e-12 84.2
51 TraesCS4A01G166900 chr1A 84.106 302 41 5 2736 3035 465252284 465252580 6.680000e-73 285.0
52 TraesCS4A01G166900 chr1A 92.126 127 9 1 3330 3455 206734413 206734539 1.170000e-40 178.0
53 TraesCS4A01G166900 chr1A 91.406 128 9 2 3330 3455 248982975 248983102 1.510000e-39 174.0
54 TraesCS4A01G166900 chr6D 89.677 155 15 1 3503 3656 472755678 472755832 3.220000e-46 196.0
55 TraesCS4A01G166900 chr6D 87.117 163 19 2 3503 3663 465724384 465724546 2.510000e-42 183.0
56 TraesCS4A01G166900 chr1D 88.462 156 16 2 3503 3656 46815709 46815554 1.940000e-43 187.0
57 TraesCS4A01G166900 chr1D 92.126 127 9 1 3333 3458 46815901 46815775 1.170000e-40 178.0
58 TraesCS4A01G166900 chr7D 88.050 159 16 3 3503 3659 108518460 108518303 6.970000e-43 185.0
59 TraesCS4A01G166900 chr5D 87.500 160 17 3 3503 3660 421210714 421210872 9.020000e-42 182.0
60 TraesCS4A01G166900 chr5D 85.859 99 11 3 560 657 231619036 231618940 7.220000e-18 102.0
61 TraesCS4A01G166900 chr5D 82.524 103 17 1 561 663 396799337 396799438 5.620000e-14 89.8
62 TraesCS4A01G166900 chr5D 91.837 49 4 0 3457 3505 362051530 362051482 7.320000e-08 69.4
63 TraesCS4A01G166900 chr7A 82.828 99 14 3 560 657 47510036 47510132 7.270000e-13 86.1
64 TraesCS4A01G166900 chr1B 97.561 41 1 0 3457 3497 160213579 160213619 2.040000e-08 71.3
65 TraesCS4A01G166900 chr1B 97.561 41 1 0 3457 3497 200163008 200163048 2.040000e-08 71.3
66 TraesCS4A01G166900 chr1B 97.561 41 1 0 3457 3497 295679249 295679209 2.040000e-08 71.3
67 TraesCS4A01G166900 chr6B 86.885 61 8 0 599 659 133129333 133129393 7.320000e-08 69.4
68 TraesCS4A01G166900 chr6B 100.000 32 0 0 626 657 48434773 48434804 4.410000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G166900 chr4A 409034572 409038654 4082 False 7540.0 7540 100.0000 1 4083 1 chr4A.!!$F1 4082
1 TraesCS4A01G166900 chr4D 179312222 179315208 2986 False 2308.5 4013 93.7075 769 4077 2 chr4D.!!$F3 3308
2 TraesCS4A01G166900 chr4D 179120489 179121081 592 False 725.0 725 88.9080 1 588 1 chr4D.!!$F1 587
3 TraesCS4A01G166900 chr4B 199189941 199192494 2553 False 3921.0 3921 94.3590 765 3333 1 chr4B.!!$F2 2568
4 TraesCS4A01G166900 chr4B 199146584 199147235 651 False 793.0 793 88.6850 1 650 1 chr4B.!!$F1 649
5 TraesCS4A01G166900 chr2B 180421412 180423772 2360 True 415.0 460 86.9925 1043 2615 2 chr2B.!!$R2 1572
6 TraesCS4A01G166900 chr2D 126737176 126739431 2255 True 418.0 455 87.0235 1043 2615 2 chr2D.!!$R2 1572
7 TraesCS4A01G166900 chr3D 412784889 412786139 1250 True 387.5 448 89.6520 1044 3035 2 chr3D.!!$R3 1991
8 TraesCS4A01G166900 chr3B 539560264 539561499 1235 True 387.5 448 89.7805 1044 3035 2 chr3B.!!$R3 1991
9 TraesCS4A01G166900 chr2A 133344173 133346363 2190 True 404.0 444 86.4050 1043 2615 2 chr2A.!!$R2 1572
10 TraesCS4A01G166900 chr3A 537507638 537508847 1209 False 373.5 431 88.9465 1044 3035 2 chr3A.!!$F2 1991

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
367 368 0.103937 GTCATGGAGCTCCGAGGAAG 59.896 60.0 27.43 12.96 39.43 3.46 F
749 755 0.446222 GGTGCATTTCACGTACGCAT 59.554 50.0 16.72 0.00 46.56 4.73 F
1539 2249 0.321653 AGGAACCCGCAATCAGTCAC 60.322 55.0 0.00 0.00 0.00 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1467 2177 0.179119 ATTAGAACGAAGGCGACCCG 60.179 55.0 0.00 0.0 41.64 5.28 R
1561 2271 1.178276 GATACGGCTCGGGATCTGAT 58.822 55.0 0.00 0.0 0.00 2.90 R
3386 4536 0.841961 AAGCATGGATGAGGCTAGCA 59.158 50.0 18.24 0.0 42.15 3.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 3.058160 GGCACAGGCGAGCACAAT 61.058 61.111 0.00 0.00 42.47 2.71
97 98 4.572389 GTGTACATCCAATCTACCAAGCAG 59.428 45.833 0.00 0.00 0.00 4.24
157 158 3.435846 TGGAAAGCCAGCACAATGA 57.564 47.368 0.00 0.00 39.92 2.57
158 159 1.927487 TGGAAAGCCAGCACAATGAT 58.073 45.000 0.00 0.00 39.92 2.45
170 171 4.334759 CAGCACAATGATCTTTCCACTAGG 59.665 45.833 0.00 0.00 0.00 3.02
183 184 2.202623 CTAGGCGAGGCGACACAC 60.203 66.667 0.00 0.00 37.34 3.82
212 213 1.152963 GGCAACGAGGCATATGGGT 60.153 57.895 4.56 0.00 43.51 4.51
261 262 1.022451 GGCAGCGGAACCGAACATTA 61.022 55.000 17.63 0.00 42.83 1.90
279 280 0.932211 TAGGGGTGGGTAGAGAGTCC 59.068 60.000 0.00 0.00 0.00 3.85
294 295 1.153997 GTCCGACCAGACGCTTCTC 60.154 63.158 0.00 0.00 0.00 2.87
330 331 2.663852 ACGTGGTGCGGTGCTAAC 60.664 61.111 0.00 0.00 46.52 2.34
358 359 4.457496 CCCACGCGTCATGGAGCT 62.457 66.667 9.86 0.00 39.87 4.09
367 368 0.103937 GTCATGGAGCTCCGAGGAAG 59.896 60.000 27.43 12.96 39.43 3.46
370 371 1.045911 ATGGAGCTCCGAGGAAGTCC 61.046 60.000 27.43 10.90 39.43 3.85
379 380 1.142097 GAGGAAGTCCGCTAGGTGC 59.858 63.158 0.00 0.00 42.08 5.01
429 430 3.266964 GCGCTCAACAGCCATTGA 58.733 55.556 0.00 0.70 43.56 2.57
440 441 1.965930 GCCATTGACACGAGGCACA 60.966 57.895 7.02 0.00 46.26 4.57
441 442 1.308069 GCCATTGACACGAGGCACAT 61.308 55.000 7.02 0.00 46.26 3.21
597 603 3.434940 AGGTCAAATCTAACCACCCAC 57.565 47.619 0.00 0.00 38.06 4.61
604 610 2.969821 TCTAACCACCCACATTGCTT 57.030 45.000 0.00 0.00 0.00 3.91
619 625 0.890542 TGCTTCAATGGTGAGCGCTT 60.891 50.000 13.26 0.00 34.49 4.68
624 630 2.710377 TCAATGGTGAGCGCTTAACAT 58.290 42.857 25.53 25.53 0.00 2.71
632 638 2.096466 TGAGCGCTTAACATGTTCAACG 60.096 45.455 15.85 17.03 0.00 4.10
667 673 9.942850 ATATCATACCAAATATCATCGTCAACA 57.057 29.630 0.00 0.00 0.00 3.33
668 674 8.853077 ATCATACCAAATATCATCGTCAACAT 57.147 30.769 0.00 0.00 0.00 2.71
669 675 8.675705 TCATACCAAATATCATCGTCAACATT 57.324 30.769 0.00 0.00 0.00 2.71
670 676 9.771534 TCATACCAAATATCATCGTCAACATTA 57.228 29.630 0.00 0.00 0.00 1.90
674 680 9.119418 ACCAAATATCATCGTCAACATTATTCA 57.881 29.630 0.00 0.00 0.00 2.57
675 681 9.385902 CCAAATATCATCGTCAACATTATTCAC 57.614 33.333 0.00 0.00 0.00 3.18
676 682 9.934190 CAAATATCATCGTCAACATTATTCACA 57.066 29.630 0.00 0.00 0.00 3.58
680 686 8.893219 ATCATCGTCAACATTATTCACATAGT 57.107 30.769 0.00 0.00 0.00 2.12
681 687 8.716646 TCATCGTCAACATTATTCACATAGTT 57.283 30.769 0.00 0.00 0.00 2.24
682 688 9.810545 TCATCGTCAACATTATTCACATAGTTA 57.189 29.630 0.00 0.00 0.00 2.24
722 728 8.635765 TTTTTATCTTTATGCCTCTCAACAGT 57.364 30.769 0.00 0.00 0.00 3.55
723 729 9.733556 TTTTTATCTTTATGCCTCTCAACAGTA 57.266 29.630 0.00 0.00 0.00 2.74
724 730 9.905713 TTTTATCTTTATGCCTCTCAACAGTAT 57.094 29.630 0.00 0.00 0.00 2.12
731 737 9.778741 TTTATGCCTCTCAACAGTATATTAAGG 57.221 33.333 0.00 0.00 0.00 2.69
732 738 6.808321 TGCCTCTCAACAGTATATTAAGGT 57.192 37.500 0.00 0.00 0.00 3.50
733 739 6.582636 TGCCTCTCAACAGTATATTAAGGTG 58.417 40.000 0.00 0.00 0.00 4.00
734 740 5.467063 GCCTCTCAACAGTATATTAAGGTGC 59.533 44.000 0.00 0.00 0.00 5.01
735 741 6.582636 CCTCTCAACAGTATATTAAGGTGCA 58.417 40.000 0.00 0.00 0.00 4.57
736 742 7.220030 CCTCTCAACAGTATATTAAGGTGCAT 58.780 38.462 0.00 0.00 0.00 3.96
737 743 7.716998 CCTCTCAACAGTATATTAAGGTGCATT 59.283 37.037 0.00 0.00 0.00 3.56
738 744 9.113838 CTCTCAACAGTATATTAAGGTGCATTT 57.886 33.333 0.00 0.00 0.00 2.32
739 745 9.109393 TCTCAACAGTATATTAAGGTGCATTTC 57.891 33.333 0.00 0.00 0.00 2.17
740 746 8.800370 TCAACAGTATATTAAGGTGCATTTCA 57.200 30.769 0.00 0.00 0.00 2.69
741 747 8.673711 TCAACAGTATATTAAGGTGCATTTCAC 58.326 33.333 0.00 0.00 44.90 3.18
742 748 7.246674 ACAGTATATTAAGGTGCATTTCACG 57.753 36.000 0.00 0.00 46.56 4.35
743 749 6.821665 ACAGTATATTAAGGTGCATTTCACGT 59.178 34.615 0.00 0.00 46.56 4.49
744 750 7.982919 ACAGTATATTAAGGTGCATTTCACGTA 59.017 33.333 0.00 0.00 46.56 3.57
745 751 8.273557 CAGTATATTAAGGTGCATTTCACGTAC 58.726 37.037 0.00 0.00 46.56 3.67
746 752 4.593597 ATTAAGGTGCATTTCACGTACG 57.406 40.909 15.01 15.01 46.56 3.67
747 753 0.515564 AAGGTGCATTTCACGTACGC 59.484 50.000 16.72 0.00 46.56 4.42
748 754 0.601576 AGGTGCATTTCACGTACGCA 60.602 50.000 16.72 0.00 46.56 5.24
749 755 0.446222 GGTGCATTTCACGTACGCAT 59.554 50.000 16.72 0.00 46.56 4.73
750 756 1.135803 GGTGCATTTCACGTACGCATT 60.136 47.619 16.72 0.00 46.56 3.56
751 757 2.580589 GTGCATTTCACGTACGCATTT 58.419 42.857 16.72 0.00 35.76 2.32
752 758 2.588106 GTGCATTTCACGTACGCATTTC 59.412 45.455 16.72 0.00 35.76 2.17
753 759 2.173964 GCATTTCACGTACGCATTTCC 58.826 47.619 16.72 0.00 0.00 3.13
754 760 2.780993 CATTTCACGTACGCATTTCCC 58.219 47.619 16.72 0.00 0.00 3.97
755 761 1.158434 TTTCACGTACGCATTTCCCC 58.842 50.000 16.72 0.00 0.00 4.81
756 762 1.015085 TTCACGTACGCATTTCCCCG 61.015 55.000 16.72 0.00 0.00 5.73
757 763 1.738830 CACGTACGCATTTCCCCGT 60.739 57.895 16.72 0.00 41.11 5.28
758 764 1.004679 ACGTACGCATTTCCCCGTT 60.005 52.632 16.72 0.00 38.75 4.44
759 765 1.015607 ACGTACGCATTTCCCCGTTC 61.016 55.000 16.72 0.00 38.75 3.95
760 766 0.738412 CGTACGCATTTCCCCGTTCT 60.738 55.000 0.52 0.00 38.75 3.01
761 767 1.445871 GTACGCATTTCCCCGTTCTT 58.554 50.000 0.00 0.00 38.75 2.52
762 768 1.808343 GTACGCATTTCCCCGTTCTTT 59.192 47.619 0.00 0.00 38.75 2.52
763 769 2.188062 ACGCATTTCCCCGTTCTTTA 57.812 45.000 0.00 0.00 33.26 1.85
767 773 3.250040 CGCATTTCCCCGTTCTTTATAGG 59.750 47.826 0.00 0.00 0.00 2.57
824 836 3.875571 AGGAAGGAGAAAGGAAAGAGGA 58.124 45.455 0.00 0.00 0.00 3.71
846 858 4.626081 ACACCGACAGGCAGGCAC 62.626 66.667 0.00 0.00 42.76 5.01
1041 1053 2.499205 GGATCGTCGGTGCCATCA 59.501 61.111 0.00 0.00 0.00 3.07
1185 1197 1.707427 AGCAAGGTCATCAAGGTTCCT 59.293 47.619 0.00 0.00 0.00 3.36
1383 1932 3.258872 TCCCTCTGCACAAATCCAAATTG 59.741 43.478 0.00 0.00 0.00 2.32
1385 1934 2.997986 CTCTGCACAAATCCAAATTGCC 59.002 45.455 0.00 0.00 0.00 4.52
1401 1950 0.896940 TGCCCTCGTTTCCTAGTCGT 60.897 55.000 0.00 0.00 0.00 4.34
1436 1985 1.151777 TTCGAATTCTGCGCGGATCC 61.152 55.000 21.71 11.04 0.00 3.36
1467 2177 1.828224 GGATTGTTGCCCCGGATCC 60.828 63.158 0.73 0.00 0.00 3.36
1489 2199 2.745821 GGGTCGCCTTCGTTCTAATTTT 59.254 45.455 0.00 0.00 36.96 1.82
1493 2203 3.123959 TCGCCTTCGTTCTAATTTTTCCG 59.876 43.478 0.00 0.00 36.96 4.30
1539 2249 0.321653 AGGAACCCGCAATCAGTCAC 60.322 55.000 0.00 0.00 0.00 3.67
1548 2258 3.243035 CCGCAATCAGTCACTTCAACAAA 60.243 43.478 0.00 0.00 0.00 2.83
1571 2281 2.520069 AGTGTAGCCTATCAGATCCCG 58.480 52.381 0.00 0.00 0.00 5.14
1651 2361 1.679944 GCTTGCATTGGCTGGTAGAGA 60.680 52.381 0.00 0.00 41.91 3.10
1712 2422 5.449297 TTTTCCCCATCTGATGTATGTGA 57.551 39.130 15.95 3.04 0.00 3.58
1721 2431 6.071165 CCATCTGATGTATGTGATAGGTAGCA 60.071 42.308 15.95 0.00 0.00 3.49
1735 2445 7.066284 GTGATAGGTAGCACATCTGTTCATTTT 59.934 37.037 0.52 0.00 41.86 1.82
1736 2446 7.611467 TGATAGGTAGCACATCTGTTCATTTTT 59.389 33.333 0.00 0.00 0.00 1.94
1738 2448 5.088739 GGTAGCACATCTGTTCATTTTTCG 58.911 41.667 0.00 0.00 0.00 3.46
1741 2451 6.312399 AGCACATCTGTTCATTTTTCGTTA 57.688 33.333 0.00 0.00 0.00 3.18
1743 2453 6.204688 AGCACATCTGTTCATTTTTCGTTAGA 59.795 34.615 0.00 0.00 0.00 2.10
1745 2455 7.017645 CACATCTGTTCATTTTTCGTTAGAGG 58.982 38.462 0.00 0.00 0.00 3.69
1746 2456 6.710744 ACATCTGTTCATTTTTCGTTAGAGGT 59.289 34.615 0.00 0.00 0.00 3.85
1747 2457 6.539649 TCTGTTCATTTTTCGTTAGAGGTG 57.460 37.500 0.00 0.00 0.00 4.00
1749 2459 6.764085 TCTGTTCATTTTTCGTTAGAGGTGAA 59.236 34.615 0.00 0.00 0.00 3.18
1752 2462 7.042051 TGTTCATTTTTCGTTAGAGGTGAAGAG 60.042 37.037 0.00 0.00 0.00 2.85
1754 2565 6.645415 TCATTTTTCGTTAGAGGTGAAGAGTC 59.355 38.462 0.00 0.00 0.00 3.36
1771 2586 8.286097 GTGAAGAGTCTTTTCATTTGGTTAGAG 58.714 37.037 6.88 0.00 36.96 2.43
1820 2635 0.532862 CACGAGTTGGCAGGTTCAGT 60.533 55.000 0.00 0.00 0.00 3.41
1821 2636 0.180406 ACGAGTTGGCAGGTTCAGTT 59.820 50.000 0.00 0.00 0.00 3.16
1822 2637 1.414919 ACGAGTTGGCAGGTTCAGTTA 59.585 47.619 0.00 0.00 0.00 2.24
1886 2701 2.097466 CAGTTGGTCCACGATATTTGCC 59.903 50.000 0.00 0.00 0.00 4.52
1915 2730 2.056577 GAGAAACACCGTTGTAGGTCG 58.943 52.381 0.00 0.00 43.89 4.79
1921 2736 2.298163 ACACCGTTGTAGGTCGATTTCT 59.702 45.455 0.00 0.00 43.89 2.52
1927 2742 5.164022 CCGTTGTAGGTCGATTTCTGTTTAC 60.164 44.000 0.00 0.00 0.00 2.01
2011 2826 1.960689 GTCTCCACTAGATCCTGCCTC 59.039 57.143 0.00 0.00 36.36 4.70
2077 3118 3.605461 CGATCAGTGTCTTGTGTTGCTTG 60.605 47.826 0.00 0.00 0.00 4.01
2090 3131 4.869297 TGTGTTGCTTGAACTGAAATTTGG 59.131 37.500 0.00 0.00 35.37 3.28
2091 3132 3.870419 TGTTGCTTGAACTGAAATTTGGC 59.130 39.130 0.00 0.00 35.37 4.52
2092 3133 3.110447 TGCTTGAACTGAAATTTGGCC 57.890 42.857 0.00 0.00 0.00 5.36
2093 3134 2.224257 TGCTTGAACTGAAATTTGGCCC 60.224 45.455 0.00 0.00 0.00 5.80
2334 3428 0.112995 ATGCACCCACACAGATGGTT 59.887 50.000 0.00 0.00 38.16 3.67
2476 3605 1.490910 GTCCTGACTATTCCCAAGGGG 59.509 57.143 5.08 0.00 46.11 4.79
3041 4188 2.362397 GACGAGCTGAACCCATCTGATA 59.638 50.000 0.00 0.00 0.00 2.15
3043 4190 2.546795 CGAGCTGAACCCATCTGATACC 60.547 54.545 0.00 0.00 0.00 2.73
3165 4315 9.844257 AAGAGATTACTGAAGCAGCTTTTATAT 57.156 29.630 9.62 0.01 34.37 0.86
3295 4445 6.193959 GCACCGTTTGTTATTATCGTGAAATC 59.806 38.462 0.00 0.00 0.00 2.17
3296 4446 7.461107 CACCGTTTGTTATTATCGTGAAATCT 58.539 34.615 0.00 0.00 0.00 2.40
3333 4483 6.317789 TCACTCATTTGTTCTTTGGCTTAG 57.682 37.500 0.00 0.00 0.00 2.18
3334 4484 6.061441 TCACTCATTTGTTCTTTGGCTTAGA 58.939 36.000 0.00 0.00 0.00 2.10
3335 4485 6.205464 TCACTCATTTGTTCTTTGGCTTAGAG 59.795 38.462 0.00 0.00 0.00 2.43
3336 4486 5.474876 ACTCATTTGTTCTTTGGCTTAGAGG 59.525 40.000 0.00 0.00 0.00 3.69
3337 4487 4.766891 TCATTTGTTCTTTGGCTTAGAGGG 59.233 41.667 0.00 0.00 0.00 4.30
3338 4488 3.876309 TTGTTCTTTGGCTTAGAGGGT 57.124 42.857 0.00 0.00 0.00 4.34
3339 4489 3.140325 TGTTCTTTGGCTTAGAGGGTG 57.860 47.619 0.00 0.00 0.00 4.61
3340 4490 1.813178 GTTCTTTGGCTTAGAGGGTGC 59.187 52.381 0.00 0.00 0.00 5.01
3341 4491 1.362224 TCTTTGGCTTAGAGGGTGCT 58.638 50.000 0.00 0.00 0.00 4.40
3342 4492 1.705186 TCTTTGGCTTAGAGGGTGCTT 59.295 47.619 0.00 0.00 0.00 3.91
3343 4493 1.815003 CTTTGGCTTAGAGGGTGCTTG 59.185 52.381 0.00 0.00 0.00 4.01
3344 4494 1.064003 TTGGCTTAGAGGGTGCTTGA 58.936 50.000 0.00 0.00 0.00 3.02
3345 4495 1.289160 TGGCTTAGAGGGTGCTTGAT 58.711 50.000 0.00 0.00 0.00 2.57
3346 4496 2.477245 TGGCTTAGAGGGTGCTTGATA 58.523 47.619 0.00 0.00 0.00 2.15
3347 4497 2.170607 TGGCTTAGAGGGTGCTTGATAC 59.829 50.000 0.00 0.00 0.00 2.24
3348 4498 2.474816 GCTTAGAGGGTGCTTGATACG 58.525 52.381 0.00 0.00 0.00 3.06
3349 4499 2.159085 GCTTAGAGGGTGCTTGATACGT 60.159 50.000 0.00 0.00 0.00 3.57
3350 4500 3.679083 GCTTAGAGGGTGCTTGATACGTT 60.679 47.826 0.00 0.00 0.00 3.99
3351 4501 4.504858 CTTAGAGGGTGCTTGATACGTTT 58.495 43.478 0.00 0.00 0.00 3.60
3352 4502 3.418684 AGAGGGTGCTTGATACGTTTT 57.581 42.857 0.00 0.00 0.00 2.43
3353 4503 4.546829 AGAGGGTGCTTGATACGTTTTA 57.453 40.909 0.00 0.00 0.00 1.52
3354 4504 4.504858 AGAGGGTGCTTGATACGTTTTAG 58.495 43.478 0.00 0.00 0.00 1.85
3355 4505 4.020485 AGAGGGTGCTTGATACGTTTTAGT 60.020 41.667 0.00 0.00 0.00 2.24
3356 4506 4.648651 AGGGTGCTTGATACGTTTTAGTT 58.351 39.130 0.00 0.00 0.00 2.24
3357 4507 4.694037 AGGGTGCTTGATACGTTTTAGTTC 59.306 41.667 0.00 0.00 0.00 3.01
3358 4508 4.694037 GGGTGCTTGATACGTTTTAGTTCT 59.306 41.667 0.00 0.00 0.00 3.01
3359 4509 5.870978 GGGTGCTTGATACGTTTTAGTTCTA 59.129 40.000 0.00 0.00 0.00 2.10
3360 4510 6.537660 GGGTGCTTGATACGTTTTAGTTCTAT 59.462 38.462 0.00 0.00 0.00 1.98
3361 4511 7.707893 GGGTGCTTGATACGTTTTAGTTCTATA 59.292 37.037 0.00 0.00 0.00 1.31
3362 4512 9.090692 GGTGCTTGATACGTTTTAGTTCTATAA 57.909 33.333 0.00 0.00 0.00 0.98
3363 4513 9.897349 GTGCTTGATACGTTTTAGTTCTATAAC 57.103 33.333 0.00 4.06 35.72 1.89
3388 4538 8.520351 ACTAAAAATAGTGGGACTAAAACATGC 58.480 33.333 0.00 0.00 33.89 4.06
3389 4539 7.539034 AAAAATAGTGGGACTAAAACATGCT 57.461 32.000 0.00 0.00 33.89 3.79
3390 4540 8.644374 AAAAATAGTGGGACTAAAACATGCTA 57.356 30.769 0.00 0.00 33.89 3.49
3391 4541 7.865706 AAATAGTGGGACTAAAACATGCTAG 57.134 36.000 0.00 0.00 33.89 3.42
3392 4542 3.610911 AGTGGGACTAAAACATGCTAGC 58.389 45.455 8.10 8.10 0.00 3.42
3393 4543 2.683362 GTGGGACTAAAACATGCTAGCC 59.317 50.000 13.29 0.00 0.00 3.93
3394 4544 2.576191 TGGGACTAAAACATGCTAGCCT 59.424 45.455 13.29 0.00 0.00 4.58
3395 4545 3.206964 GGGACTAAAACATGCTAGCCTC 58.793 50.000 13.29 0.00 0.00 4.70
3396 4546 3.370527 GGGACTAAAACATGCTAGCCTCA 60.371 47.826 13.29 0.00 0.00 3.86
3397 4547 4.455606 GGACTAAAACATGCTAGCCTCAT 58.544 43.478 13.29 0.00 0.00 2.90
3398 4548 4.513318 GGACTAAAACATGCTAGCCTCATC 59.487 45.833 13.29 0.00 0.00 2.92
3399 4549 4.455606 ACTAAAACATGCTAGCCTCATCC 58.544 43.478 13.29 0.00 0.00 3.51
3400 4550 3.370840 AAAACATGCTAGCCTCATCCA 57.629 42.857 13.29 0.00 0.00 3.41
3401 4551 3.589951 AAACATGCTAGCCTCATCCAT 57.410 42.857 13.29 0.00 0.00 3.41
3402 4552 2.563261 ACATGCTAGCCTCATCCATG 57.437 50.000 13.29 9.71 39.23 3.66
3403 4553 1.166129 CATGCTAGCCTCATCCATGC 58.834 55.000 13.29 0.00 0.00 4.06
3404 4554 1.065647 ATGCTAGCCTCATCCATGCT 58.934 50.000 13.29 0.00 39.10 3.79
3405 4555 0.841961 TGCTAGCCTCATCCATGCTT 59.158 50.000 13.29 0.00 36.57 3.91
3406 4556 1.236628 GCTAGCCTCATCCATGCTTG 58.763 55.000 2.29 0.00 36.57 4.01
3407 4557 1.893544 CTAGCCTCATCCATGCTTGG 58.106 55.000 12.41 12.41 45.15 3.61
3446 4596 9.723601 AAAAGGCTAAAATCAAATTAATGAGCA 57.276 25.926 0.00 0.00 31.76 4.26
3447 4597 9.895138 AAAGGCTAAAATCAAATTAATGAGCAT 57.105 25.926 0.00 0.00 31.76 3.79
3448 4598 9.895138 AAGGCTAAAATCAAATTAATGAGCATT 57.105 25.926 0.97 0.97 31.76 3.56
3449 4599 9.895138 AGGCTAAAATCAAATTAATGAGCATTT 57.105 25.926 0.52 0.00 31.76 2.32
3476 4626 9.842775 ATTATTCTAGAATCAAGTCAATGAGCA 57.157 29.630 21.17 0.00 31.76 4.26
3477 4627 9.842775 TTATTCTAGAATCAAGTCAATGAGCAT 57.157 29.630 21.17 0.00 31.76 3.79
3478 4628 8.749026 ATTCTAGAATCAAGTCAATGAGCATT 57.251 30.769 12.37 0.00 31.76 3.56
3479 4629 8.571461 TTCTAGAATCAAGTCAATGAGCATTT 57.429 30.769 0.00 0.00 31.76 2.32
3480 4630 9.671279 TTCTAGAATCAAGTCAATGAGCATTTA 57.329 29.630 0.00 0.00 31.76 1.40
3481 4631 9.842775 TCTAGAATCAAGTCAATGAGCATTTAT 57.157 29.630 0.00 0.00 31.76 1.40
3487 4637 8.985315 TCAAGTCAATGAGCATTTATTATCCT 57.015 30.769 0.00 0.00 0.00 3.24
3488 4638 9.412460 TCAAGTCAATGAGCATTTATTATCCTT 57.588 29.630 0.00 0.00 0.00 3.36
3489 4639 9.674824 CAAGTCAATGAGCATTTATTATCCTTC 57.325 33.333 0.00 0.00 0.00 3.46
3490 4640 8.985315 AGTCAATGAGCATTTATTATCCTTCA 57.015 30.769 0.00 0.00 0.00 3.02
3491 4641 9.412460 AGTCAATGAGCATTTATTATCCTTCAA 57.588 29.630 0.00 0.00 0.00 2.69
3494 4644 9.252962 CAATGAGCATTTATTATCCTTCAAACC 57.747 33.333 0.00 0.00 0.00 3.27
3495 4645 7.346751 TGAGCATTTATTATCCTTCAAACCC 57.653 36.000 0.00 0.00 0.00 4.11
3496 4646 7.125391 TGAGCATTTATTATCCTTCAAACCCT 58.875 34.615 0.00 0.00 0.00 4.34
3497 4647 8.278639 TGAGCATTTATTATCCTTCAAACCCTA 58.721 33.333 0.00 0.00 0.00 3.53
3498 4648 8.697507 AGCATTTATTATCCTTCAAACCCTAG 57.302 34.615 0.00 0.00 0.00 3.02
3499 4649 8.502738 AGCATTTATTATCCTTCAAACCCTAGA 58.497 33.333 0.00 0.00 0.00 2.43
3500 4650 9.131791 GCATTTATTATCCTTCAAACCCTAGAA 57.868 33.333 0.00 0.00 0.00 2.10
3509 4659 8.575649 TCCTTCAAACCCTAGAATTAATTCAC 57.424 34.615 26.02 5.03 39.23 3.18
3510 4660 8.167392 TCCTTCAAACCCTAGAATTAATTCACA 58.833 33.333 26.02 14.40 39.23 3.58
3511 4661 8.971073 CCTTCAAACCCTAGAATTAATTCACAT 58.029 33.333 26.02 11.31 39.23 3.21
3564 4714 7.907214 TTCAATCTCAAGACTAGTTTTAGCC 57.093 36.000 0.00 0.00 0.00 3.93
3565 4715 7.004555 TCAATCTCAAGACTAGTTTTAGCCA 57.995 36.000 0.00 0.00 0.00 4.75
3566 4716 6.874134 TCAATCTCAAGACTAGTTTTAGCCAC 59.126 38.462 0.00 0.00 0.00 5.01
3567 4717 6.613153 ATCTCAAGACTAGTTTTAGCCACT 57.387 37.500 0.00 0.00 0.00 4.00
3568 4718 6.026947 TCTCAAGACTAGTTTTAGCCACTC 57.973 41.667 0.00 0.00 0.00 3.51
3569 4719 5.775701 TCTCAAGACTAGTTTTAGCCACTCT 59.224 40.000 0.00 0.00 0.00 3.24
3570 4720 6.267928 TCTCAAGACTAGTTTTAGCCACTCTT 59.732 38.462 0.00 0.00 0.00 2.85
3571 4721 6.827727 TCAAGACTAGTTTTAGCCACTCTTT 58.172 36.000 0.00 0.00 0.00 2.52
3572 4722 7.959175 TCAAGACTAGTTTTAGCCACTCTTTA 58.041 34.615 0.00 0.00 0.00 1.85
3573 4723 8.088981 TCAAGACTAGTTTTAGCCACTCTTTAG 58.911 37.037 0.00 0.00 0.00 1.85
3574 4724 7.541916 AGACTAGTTTTAGCCACTCTTTAGT 57.458 36.000 0.00 0.00 35.91 2.24
3575 4725 7.604549 AGACTAGTTTTAGCCACTCTTTAGTC 58.395 38.462 0.00 0.00 31.97 2.59
3576 4726 7.232941 AGACTAGTTTTAGCCACTCTTTAGTCA 59.767 37.037 0.00 0.00 32.16 3.41
3577 4727 7.732996 ACTAGTTTTAGCCACTCTTTAGTCAA 58.267 34.615 0.00 0.00 31.97 3.18
3578 4728 8.208903 ACTAGTTTTAGCCACTCTTTAGTCAAA 58.791 33.333 0.00 0.00 31.97 2.69
3579 4729 7.497925 AGTTTTAGCCACTCTTTAGTCAAAG 57.502 36.000 0.00 0.00 42.21 2.77
3580 4730 6.486993 AGTTTTAGCCACTCTTTAGTCAAAGG 59.513 38.462 0.00 0.00 41.35 3.11
3581 4731 5.562298 TTAGCCACTCTTTAGTCAAAGGT 57.438 39.130 0.00 0.00 41.35 3.50
3582 4732 3.744660 AGCCACTCTTTAGTCAAAGGTG 58.255 45.455 9.73 9.73 41.35 4.00
3583 4733 2.226674 GCCACTCTTTAGTCAAAGGTGC 59.773 50.000 10.61 0.00 41.35 5.01
3584 4734 3.744660 CCACTCTTTAGTCAAAGGTGCT 58.255 45.455 10.61 0.00 41.35 4.40
3585 4735 4.137543 CCACTCTTTAGTCAAAGGTGCTT 58.862 43.478 10.61 0.00 41.35 3.91
3586 4736 4.023707 CCACTCTTTAGTCAAAGGTGCTTG 60.024 45.833 10.61 0.00 41.35 4.01
3587 4737 4.816385 CACTCTTTAGTCAAAGGTGCTTGA 59.184 41.667 0.00 0.00 41.35 3.02
3588 4738 5.296780 CACTCTTTAGTCAAAGGTGCTTGAA 59.703 40.000 0.00 0.00 41.35 2.69
3589 4739 5.885912 ACTCTTTAGTCAAAGGTGCTTGAAA 59.114 36.000 0.00 0.00 41.35 2.69
3590 4740 6.038714 ACTCTTTAGTCAAAGGTGCTTGAAAG 59.961 38.462 0.00 0.00 41.35 2.62
3591 4741 5.885912 TCTTTAGTCAAAGGTGCTTGAAAGT 59.114 36.000 0.00 0.00 41.35 2.66
3592 4742 6.377146 TCTTTAGTCAAAGGTGCTTGAAAGTT 59.623 34.615 0.00 0.00 41.35 2.66
3593 4743 6.524101 TTAGTCAAAGGTGCTTGAAAGTTT 57.476 33.333 0.00 0.00 37.08 2.66
3594 4744 7.633193 TTAGTCAAAGGTGCTTGAAAGTTTA 57.367 32.000 0.00 0.00 37.08 2.01
3595 4745 6.136541 AGTCAAAGGTGCTTGAAAGTTTAG 57.863 37.500 0.00 0.00 37.08 1.85
3596 4746 4.740205 GTCAAAGGTGCTTGAAAGTTTAGC 59.260 41.667 3.79 3.79 37.08 3.09
3597 4747 4.051237 CAAAGGTGCTTGAAAGTTTAGCC 58.949 43.478 7.70 0.80 34.03 3.93
3598 4748 3.229697 AGGTGCTTGAAAGTTTAGCCT 57.770 42.857 7.70 0.00 34.03 4.58
3599 4749 3.149981 AGGTGCTTGAAAGTTTAGCCTC 58.850 45.455 7.70 2.38 34.03 4.70
3600 4750 3.149981 GGTGCTTGAAAGTTTAGCCTCT 58.850 45.455 7.70 0.00 34.03 3.69
3601 4751 3.570125 GGTGCTTGAAAGTTTAGCCTCTT 59.430 43.478 7.70 0.00 34.03 2.85
3602 4752 4.760204 GGTGCTTGAAAGTTTAGCCTCTTA 59.240 41.667 7.70 0.00 34.03 2.10
3603 4753 5.240844 GGTGCTTGAAAGTTTAGCCTCTTAA 59.759 40.000 7.70 0.00 34.03 1.85
3604 4754 6.238925 GGTGCTTGAAAGTTTAGCCTCTTAAA 60.239 38.462 7.70 0.00 34.03 1.52
3605 4755 7.200455 GTGCTTGAAAGTTTAGCCTCTTAAAA 58.800 34.615 7.70 0.00 34.03 1.52
3606 4756 7.704899 GTGCTTGAAAGTTTAGCCTCTTAAAAA 59.295 33.333 7.70 0.00 34.03 1.94
3648 4798 9.875691 ACTAAAATAAATCTTTTGGATCCAAGC 57.124 29.630 25.69 0.00 37.24 4.01
3649 4799 9.874205 CTAAAATAAATCTTTTGGATCCAAGCA 57.126 29.630 25.69 16.13 37.24 3.91
3650 4800 8.552083 AAAATAAATCTTTTGGATCCAAGCAC 57.448 30.769 25.69 0.00 37.24 4.40
3651 4801 7.486407 AATAAATCTTTTGGATCCAAGCACT 57.514 32.000 25.69 12.72 37.24 4.40
3652 4802 5.397142 AAATCTTTTGGATCCAAGCACTC 57.603 39.130 25.69 0.00 37.24 3.51
3653 4803 3.795688 TCTTTTGGATCCAAGCACTCT 57.204 42.857 25.69 0.00 37.24 3.24
3654 4804 3.679389 TCTTTTGGATCCAAGCACTCTC 58.321 45.455 25.69 0.00 37.24 3.20
3655 4805 3.328931 TCTTTTGGATCCAAGCACTCTCT 59.671 43.478 25.69 0.00 37.24 3.10
3656 4806 3.795688 TTTGGATCCAAGCACTCTCTT 57.204 42.857 25.69 0.00 37.24 2.85
3657 4807 4.908601 TTTGGATCCAAGCACTCTCTTA 57.091 40.909 25.69 5.70 37.24 2.10
3671 4821 5.642491 GCACTCTCTTAATTTTCCCTAACGT 59.358 40.000 0.00 0.00 0.00 3.99
3672 4822 6.815142 GCACTCTCTTAATTTTCCCTAACGTA 59.185 38.462 0.00 0.00 0.00 3.57
3675 4825 9.955102 ACTCTCTTAATTTTCCCTAACGTAAAT 57.045 29.630 0.00 0.00 0.00 1.40
3714 4864 1.431440 GCACTGACAAACACGCCAA 59.569 52.632 0.00 0.00 0.00 4.52
3715 4865 0.179150 GCACTGACAAACACGCCAAA 60.179 50.000 0.00 0.00 0.00 3.28
3746 4896 1.404843 GGATAGCGAGGAAGGACTGT 58.595 55.000 0.00 0.00 0.00 3.55
3788 4939 0.957888 TCGCGATTGGTGCAATTCCA 60.958 50.000 3.71 0.00 33.90 3.53
3795 4946 3.959535 TTGGTGCAATTCCATTCTTCC 57.040 42.857 0.00 0.00 34.75 3.46
3808 4960 6.500589 TCCATTCTTCCCTTTATTCTCGAT 57.499 37.500 0.00 0.00 0.00 3.59
3818 4970 0.679505 TATTCTCGATTCCCCAGCCG 59.320 55.000 0.00 0.00 0.00 5.52
3872 5024 4.404640 ACTCCCCAGCCTTTTACTTTTAC 58.595 43.478 0.00 0.00 0.00 2.01
3873 5025 4.105858 ACTCCCCAGCCTTTTACTTTTACT 59.894 41.667 0.00 0.00 0.00 2.24
3878 5030 5.535030 CCCAGCCTTTTACTTTTACTGAAGT 59.465 40.000 0.00 0.00 42.27 3.01
3888 5040 4.331717 ACTTTTACTGAAGTGTTGGACGTG 59.668 41.667 0.00 0.00 38.39 4.49
3916 5068 8.420374 TTGTTGCGGTTTTCATAATGTTTTTA 57.580 26.923 0.00 0.00 0.00 1.52
4078 5230 8.570096 TTTATTTAGTAGAATCGTGGATGTCG 57.430 34.615 0.00 0.00 0.00 4.35
4079 5231 5.823209 TTTAGTAGAATCGTGGATGTCGA 57.177 39.130 0.00 0.00 41.45 4.20
4081 5233 7.500720 TTTAGTAGAATCGTGGATGTCGATA 57.499 36.000 1.44 0.00 45.33 2.92
4082 5234 7.683437 TTAGTAGAATCGTGGATGTCGATAT 57.317 36.000 0.00 0.00 45.33 1.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 3.884091 ACGGTTTATGTGTTGCTTGGTTA 59.116 39.130 0.00 0.00 0.00 2.85
97 98 1.153349 GGTCGGTCCTCTTCATGGC 60.153 63.158 0.00 0.00 0.00 4.40
150 151 3.310774 CGCCTAGTGGAAAGATCATTGTG 59.689 47.826 0.00 0.00 34.57 3.33
157 158 0.466124 GCCTCGCCTAGTGGAAAGAT 59.534 55.000 0.00 0.00 35.58 2.40
158 159 1.898154 GCCTCGCCTAGTGGAAAGA 59.102 57.895 0.00 0.00 35.58 2.52
185 186 4.659172 CTCGTTGCCCTTGCCCCA 62.659 66.667 0.00 0.00 36.33 4.96
191 192 0.466189 CCATATGCCTCGTTGCCCTT 60.466 55.000 0.00 0.00 0.00 3.95
231 232 3.585990 CGCTGCCCGGGCTTATTG 61.586 66.667 43.34 27.42 42.51 1.90
261 262 1.704704 GGACTCTCTACCCACCCCT 59.295 63.158 0.00 0.00 0.00 4.79
279 280 1.066114 GTTCGAGAAGCGTCTGGTCG 61.066 60.000 6.97 5.13 41.80 4.79
323 324 3.788766 CCGCTGGCACGTTAGCAC 61.789 66.667 14.34 0.00 39.87 4.40
358 359 1.453379 CCTAGCGGACTTCCTCGGA 60.453 63.158 0.00 0.00 0.00 4.55
379 380 1.464429 CGATCTTCACGGACGCTTCG 61.464 60.000 0.00 0.00 0.00 3.79
381 382 4.478195 CGATCTTCACGGACGCTT 57.522 55.556 0.00 0.00 0.00 4.68
418 419 1.237285 GCCTCGTGTCAATGGCTGTT 61.237 55.000 0.00 0.00 41.92 3.16
440 441 3.475774 GTCGTCCGTTTCGCGCAT 61.476 61.111 8.75 0.00 39.71 4.73
553 559 4.584327 TTTGATAGCCGAGATCGATTGA 57.416 40.909 0.00 0.00 43.02 2.57
604 610 2.177394 TGTTAAGCGCTCACCATTGA 57.823 45.000 12.06 0.00 0.00 2.57
650 656 9.934190 TGTGAATAATGTTGACGATGATATTTG 57.066 29.630 0.00 0.00 0.00 2.32
654 660 9.981114 ACTATGTGAATAATGTTGACGATGATA 57.019 29.630 0.00 0.00 0.00 2.15
655 661 8.893219 ACTATGTGAATAATGTTGACGATGAT 57.107 30.769 0.00 0.00 0.00 2.45
656 662 8.716646 AACTATGTGAATAATGTTGACGATGA 57.283 30.769 0.00 0.00 0.00 2.92
697 703 8.635765 ACTGTTGAGAGGCATAAAGATAAAAA 57.364 30.769 0.00 0.00 0.00 1.94
698 704 9.905713 ATACTGTTGAGAGGCATAAAGATAAAA 57.094 29.630 0.00 0.00 0.00 1.52
705 711 9.778741 CCTTAATATACTGTTGAGAGGCATAAA 57.221 33.333 0.00 0.00 0.00 1.40
706 712 8.934697 ACCTTAATATACTGTTGAGAGGCATAA 58.065 33.333 0.00 0.00 0.00 1.90
707 713 8.367911 CACCTTAATATACTGTTGAGAGGCATA 58.632 37.037 0.00 0.00 0.00 3.14
708 714 7.220030 CACCTTAATATACTGTTGAGAGGCAT 58.780 38.462 0.00 0.00 0.00 4.40
709 715 6.582636 CACCTTAATATACTGTTGAGAGGCA 58.417 40.000 0.00 0.00 0.00 4.75
710 716 5.467063 GCACCTTAATATACTGTTGAGAGGC 59.533 44.000 0.00 0.00 0.00 4.70
711 717 6.582636 TGCACCTTAATATACTGTTGAGAGG 58.417 40.000 0.00 0.00 0.00 3.69
712 718 8.668510 AATGCACCTTAATATACTGTTGAGAG 57.331 34.615 0.00 0.00 0.00 3.20
713 719 9.109393 GAAATGCACCTTAATATACTGTTGAGA 57.891 33.333 0.00 0.00 0.00 3.27
714 720 8.892723 TGAAATGCACCTTAATATACTGTTGAG 58.107 33.333 0.00 0.00 0.00 3.02
715 721 8.673711 GTGAAATGCACCTTAATATACTGTTGA 58.326 33.333 0.00 0.00 41.78 3.18
716 722 7.639850 CGTGAAATGCACCTTAATATACTGTTG 59.360 37.037 0.00 0.00 44.85 3.33
717 723 7.335924 ACGTGAAATGCACCTTAATATACTGTT 59.664 33.333 0.00 0.00 44.85 3.16
718 724 6.821665 ACGTGAAATGCACCTTAATATACTGT 59.178 34.615 0.00 0.00 44.85 3.55
719 725 7.246674 ACGTGAAATGCACCTTAATATACTG 57.753 36.000 0.00 0.00 44.85 2.74
720 726 7.168637 CGTACGTGAAATGCACCTTAATATACT 59.831 37.037 7.22 0.00 44.85 2.12
721 727 7.278629 CGTACGTGAAATGCACCTTAATATAC 58.721 38.462 7.22 0.00 44.85 1.47
722 728 6.074195 GCGTACGTGAAATGCACCTTAATATA 60.074 38.462 17.90 0.00 44.85 0.86
723 729 5.277154 GCGTACGTGAAATGCACCTTAATAT 60.277 40.000 17.90 0.00 44.85 1.28
724 730 4.033129 GCGTACGTGAAATGCACCTTAATA 59.967 41.667 17.90 0.00 44.85 0.98
725 731 3.181514 GCGTACGTGAAATGCACCTTAAT 60.182 43.478 17.90 0.00 44.85 1.40
726 732 2.158058 GCGTACGTGAAATGCACCTTAA 59.842 45.455 17.90 0.00 44.85 1.85
727 733 1.727880 GCGTACGTGAAATGCACCTTA 59.272 47.619 17.90 0.00 44.85 2.69
728 734 0.515564 GCGTACGTGAAATGCACCTT 59.484 50.000 17.90 0.00 44.85 3.50
729 735 0.601576 TGCGTACGTGAAATGCACCT 60.602 50.000 17.90 0.00 44.85 4.00
730 736 0.446222 ATGCGTACGTGAAATGCACC 59.554 50.000 17.90 0.00 44.85 5.01
731 737 2.241259 AATGCGTACGTGAAATGCAC 57.759 45.000 17.90 0.00 41.40 4.57
732 738 2.413502 GGAAATGCGTACGTGAAATGCA 60.414 45.455 17.90 6.18 42.68 3.96
733 739 2.173964 GGAAATGCGTACGTGAAATGC 58.826 47.619 17.90 0.00 0.00 3.56
734 740 2.477189 GGGGAAATGCGTACGTGAAATG 60.477 50.000 17.90 0.00 0.00 2.32
735 741 1.741145 GGGGAAATGCGTACGTGAAAT 59.259 47.619 17.90 3.23 0.00 2.17
736 742 1.158434 GGGGAAATGCGTACGTGAAA 58.842 50.000 17.90 0.74 0.00 2.69
737 743 1.015085 CGGGGAAATGCGTACGTGAA 61.015 55.000 17.90 3.43 0.00 3.18
738 744 1.446445 CGGGGAAATGCGTACGTGA 60.446 57.895 17.90 4.24 0.00 4.35
739 745 1.293267 AACGGGGAAATGCGTACGTG 61.293 55.000 17.90 0.00 34.54 4.49
740 746 1.004679 AACGGGGAAATGCGTACGT 60.005 52.632 17.90 0.00 35.95 3.57
741 747 0.738412 AGAACGGGGAAATGCGTACG 60.738 55.000 11.84 11.84 0.00 3.67
742 748 1.445871 AAGAACGGGGAAATGCGTAC 58.554 50.000 0.00 0.00 0.00 3.67
743 749 2.188062 AAAGAACGGGGAAATGCGTA 57.812 45.000 0.00 0.00 0.00 4.42
744 750 2.188062 TAAAGAACGGGGAAATGCGT 57.812 45.000 0.00 0.00 0.00 5.24
745 751 3.250040 CCTATAAAGAACGGGGAAATGCG 59.750 47.826 0.00 0.00 0.00 4.73
746 752 4.457466 TCCTATAAAGAACGGGGAAATGC 58.543 43.478 0.00 0.00 0.00 3.56
747 753 5.531287 CCTTCCTATAAAGAACGGGGAAATG 59.469 44.000 0.00 0.00 33.31 2.32
748 754 5.430745 TCCTTCCTATAAAGAACGGGGAAAT 59.569 40.000 0.00 0.00 33.31 2.17
749 755 4.784300 TCCTTCCTATAAAGAACGGGGAAA 59.216 41.667 0.00 0.00 33.31 3.13
750 756 4.364470 TCCTTCCTATAAAGAACGGGGAA 58.636 43.478 0.00 0.00 0.00 3.97
751 757 3.965347 CTCCTTCCTATAAAGAACGGGGA 59.035 47.826 0.00 0.00 0.00 4.81
752 758 3.965347 TCTCCTTCCTATAAAGAACGGGG 59.035 47.826 0.00 0.00 0.00 5.73
753 759 5.609533 TTCTCCTTCCTATAAAGAACGGG 57.390 43.478 0.00 0.00 0.00 5.28
754 760 9.609346 TTATTTTCTCCTTCCTATAAAGAACGG 57.391 33.333 0.00 0.00 0.00 4.44
792 801 5.592688 CCTTTCTCCTTCCTTTTGTGTGTTA 59.407 40.000 0.00 0.00 0.00 2.41
824 836 4.539083 TGCCTGTCGGTGTGCGTT 62.539 61.111 0.00 0.00 0.00 4.84
846 858 4.399004 AGAAGACTTTCATCTCCATCGG 57.601 45.455 0.00 0.00 35.70 4.18
1185 1197 1.654954 GCTCGTAGTCGAAGCCCTCA 61.655 60.000 0.00 0.00 45.61 3.86
1383 1932 0.245813 AACGACTAGGAAACGAGGGC 59.754 55.000 0.00 0.00 37.39 5.19
1385 1934 1.817447 AGGAACGACTAGGAAACGAGG 59.183 52.381 0.00 0.00 37.39 4.63
1401 1950 1.298157 CGAACAATCGCCAGCAGGAA 61.298 55.000 0.00 0.00 42.96 3.36
1436 1985 3.365969 GCAACAATCCTAAACTTCCCACG 60.366 47.826 0.00 0.00 0.00 4.94
1444 1993 0.815095 CCGGGGCAACAATCCTAAAC 59.185 55.000 0.00 0.00 39.74 2.01
1467 2177 0.179119 ATTAGAACGAAGGCGACCCG 60.179 55.000 0.00 0.00 41.64 5.28
1489 2199 1.139654 CTGATCAAGCCAGATCCGGAA 59.860 52.381 9.01 0.00 42.95 4.30
1548 2258 4.202264 CGGGATCTGATAGGCTACACTTTT 60.202 45.833 0.00 0.00 0.00 2.27
1561 2271 1.178276 GATACGGCTCGGGATCTGAT 58.822 55.000 0.00 0.00 0.00 2.90
1571 2281 2.799412 CTGCTCAAATCTGATACGGCTC 59.201 50.000 0.00 0.00 0.00 4.70
1651 2361 6.611613 TCACAGAGATCACTTTACTGGATT 57.388 37.500 0.00 0.00 33.57 3.01
1695 2405 5.752036 ACCTATCACATACATCAGATGGG 57.248 43.478 15.13 6.42 42.70 4.00
1712 2422 7.201644 CGAAAAATGAACAGATGTGCTACCTAT 60.202 37.037 0.00 0.00 0.00 2.57
1721 2431 6.710744 ACCTCTAACGAAAAATGAACAGATGT 59.289 34.615 0.00 0.00 0.00 3.06
1729 2439 6.522054 ACTCTTCACCTCTAACGAAAAATGA 58.478 36.000 0.00 0.00 0.00 2.57
1735 2445 5.786264 AAAGACTCTTCACCTCTAACGAA 57.214 39.130 0.00 0.00 0.00 3.85
1736 2446 5.301045 TGAAAAGACTCTTCACCTCTAACGA 59.699 40.000 0.00 0.00 0.00 3.85
1738 2448 7.971183 AATGAAAAGACTCTTCACCTCTAAC 57.029 36.000 0.00 0.00 35.70 2.34
1741 2451 5.767168 CCAAATGAAAAGACTCTTCACCTCT 59.233 40.000 0.00 0.00 35.70 3.69
1743 2453 5.449553 ACCAAATGAAAAGACTCTTCACCT 58.550 37.500 0.00 0.00 35.70 4.00
1745 2455 8.154649 TCTAACCAAATGAAAAGACTCTTCAC 57.845 34.615 0.00 0.00 35.70 3.18
1746 2456 7.445402 CCTCTAACCAAATGAAAAGACTCTTCA 59.555 37.037 0.00 0.00 37.22 3.02
1747 2457 7.445707 ACCTCTAACCAAATGAAAAGACTCTTC 59.554 37.037 0.00 0.00 0.00 2.87
1749 2459 6.842676 ACCTCTAACCAAATGAAAAGACTCT 58.157 36.000 0.00 0.00 0.00 3.24
1752 2462 7.511959 AGAACCTCTAACCAAATGAAAAGAC 57.488 36.000 0.00 0.00 0.00 3.01
1754 2565 8.622948 ACTAGAACCTCTAACCAAATGAAAAG 57.377 34.615 0.00 0.00 0.00 2.27
1771 2586 5.231568 CGACCGAATCACATAAACTAGAACC 59.768 44.000 0.00 0.00 0.00 3.62
1813 2628 7.303261 GCTGTTTGGTTACTAATAACTGAACC 58.697 38.462 9.13 0.00 40.59 3.62
1820 2635 6.318628 CAATGCGCTGTTTGGTTACTAATAA 58.681 36.000 9.73 0.00 0.00 1.40
1821 2636 5.675071 GCAATGCGCTGTTTGGTTACTAATA 60.675 40.000 9.73 0.00 37.77 0.98
1822 2637 4.732784 CAATGCGCTGTTTGGTTACTAAT 58.267 39.130 9.73 0.00 0.00 1.73
1855 2670 2.614057 GTGGACCAACTGAAACTGACAG 59.386 50.000 0.00 0.00 40.68 3.51
1886 2701 1.202582 ACGGTGTTTCTCGGATCTGAG 59.797 52.381 23.48 23.48 37.33 3.35
1915 2730 9.646427 ATCAAGTACAGAGAGTAAACAGAAATC 57.354 33.333 0.00 0.00 33.72 2.17
1921 2736 7.210718 TCGAATCAAGTACAGAGAGTAAACA 57.789 36.000 0.00 0.00 33.72 2.83
1927 2742 8.689251 TTTACAATCGAATCAAGTACAGAGAG 57.311 34.615 0.00 0.00 0.00 3.20
2011 2826 3.377485 CCACTTGATTGCTTCATCAGGAG 59.623 47.826 9.25 3.28 33.34 3.69
2077 3118 2.529632 AGGAGGGCCAAATTTCAGTTC 58.470 47.619 6.18 0.00 36.29 3.01
2090 3131 1.410224 CCACCTATTTCCAAGGAGGGC 60.410 57.143 0.00 0.00 40.21 5.19
2091 3132 1.410224 GCCACCTATTTCCAAGGAGGG 60.410 57.143 7.56 4.51 43.10 4.30
2092 3133 1.410224 GGCCACCTATTTCCAAGGAGG 60.410 57.143 0.00 1.65 45.01 4.30
2093 3134 1.284785 TGGCCACCTATTTCCAAGGAG 59.715 52.381 0.00 0.00 37.57 3.69
2396 3525 6.327177 CAGCAATTCTTGATGCAATACAAC 57.673 37.500 0.00 0.00 44.95 3.32
2476 3605 1.238439 CACACATGGGGAACAGTGTC 58.762 55.000 0.00 0.00 38.50 3.67
3041 4188 4.988598 CCCAGCAGCAACGACGGT 62.989 66.667 0.00 0.00 0.00 4.83
3043 4190 2.664851 TTCCCAGCAGCAACGACG 60.665 61.111 0.00 0.00 0.00 5.12
3078 4225 2.688666 CTCCCCAGCCAGCCTACA 60.689 66.667 0.00 0.00 0.00 2.74
3102 4252 2.206322 TCTAGGCCCCAACCATACAT 57.794 50.000 0.00 0.00 0.00 2.29
3165 4315 4.832266 ACCACCAGCATAACATGAAAGAAA 59.168 37.500 0.00 0.00 0.00 2.52
3333 4483 4.251268 ACTAAAACGTATCAAGCACCCTC 58.749 43.478 0.00 0.00 0.00 4.30
3334 4484 4.281898 ACTAAAACGTATCAAGCACCCT 57.718 40.909 0.00 0.00 0.00 4.34
3335 4485 4.694037 AGAACTAAAACGTATCAAGCACCC 59.306 41.667 0.00 0.00 0.00 4.61
3336 4486 5.857822 AGAACTAAAACGTATCAAGCACC 57.142 39.130 0.00 0.00 0.00 5.01
3337 4487 9.897349 GTTATAGAACTAAAACGTATCAAGCAC 57.103 33.333 0.00 0.00 32.40 4.40
3338 4488 9.865321 AGTTATAGAACTAAAACGTATCAAGCA 57.135 29.630 0.00 0.00 44.36 3.91
3362 4512 8.520351 GCATGTTTTAGTCCCACTATTTTTAGT 58.480 33.333 0.00 0.00 29.64 2.24
3363 4513 8.739972 AGCATGTTTTAGTCCCACTATTTTTAG 58.260 33.333 0.00 0.00 29.64 1.85
3364 4514 8.644374 AGCATGTTTTAGTCCCACTATTTTTA 57.356 30.769 0.00 0.00 29.64 1.52
3365 4515 7.539034 AGCATGTTTTAGTCCCACTATTTTT 57.461 32.000 0.00 0.00 29.64 1.94
3366 4516 7.148069 GCTAGCATGTTTTAGTCCCACTATTTT 60.148 37.037 10.63 0.00 29.64 1.82
3367 4517 6.318900 GCTAGCATGTTTTAGTCCCACTATTT 59.681 38.462 10.63 0.00 29.64 1.40
3368 4518 5.823045 GCTAGCATGTTTTAGTCCCACTATT 59.177 40.000 10.63 0.00 29.64 1.73
3369 4519 5.368989 GCTAGCATGTTTTAGTCCCACTAT 58.631 41.667 10.63 0.00 29.64 2.12
3370 4520 4.383770 GGCTAGCATGTTTTAGTCCCACTA 60.384 45.833 18.24 0.00 0.00 2.74
3371 4521 3.610911 GCTAGCATGTTTTAGTCCCACT 58.389 45.455 10.63 0.00 0.00 4.00
3372 4522 2.683362 GGCTAGCATGTTTTAGTCCCAC 59.317 50.000 18.24 0.00 0.00 4.61
3373 4523 2.576191 AGGCTAGCATGTTTTAGTCCCA 59.424 45.455 18.24 0.00 0.00 4.37
3374 4524 3.206964 GAGGCTAGCATGTTTTAGTCCC 58.793 50.000 18.24 0.00 0.00 4.46
3375 4525 3.873910 TGAGGCTAGCATGTTTTAGTCC 58.126 45.455 18.24 0.00 0.00 3.85
3376 4526 4.513318 GGATGAGGCTAGCATGTTTTAGTC 59.487 45.833 18.24 0.00 0.00 2.59
3377 4527 4.080356 TGGATGAGGCTAGCATGTTTTAGT 60.080 41.667 18.24 0.00 0.00 2.24
3378 4528 4.454678 TGGATGAGGCTAGCATGTTTTAG 58.545 43.478 18.24 0.00 0.00 1.85
3379 4529 4.502105 TGGATGAGGCTAGCATGTTTTA 57.498 40.909 18.24 0.00 0.00 1.52
3380 4530 3.370840 TGGATGAGGCTAGCATGTTTT 57.629 42.857 18.24 0.00 0.00 2.43
3381 4531 3.220110 CATGGATGAGGCTAGCATGTTT 58.780 45.455 18.24 0.00 0.00 2.83
3382 4532 2.860009 CATGGATGAGGCTAGCATGTT 58.140 47.619 18.24 0.00 0.00 2.71
3383 4533 1.544982 GCATGGATGAGGCTAGCATGT 60.545 52.381 18.24 0.00 0.00 3.21
3384 4534 1.166129 GCATGGATGAGGCTAGCATG 58.834 55.000 18.24 10.60 0.00 4.06
3385 4535 1.065647 AGCATGGATGAGGCTAGCAT 58.934 50.000 18.24 10.08 40.84 3.79
3386 4536 0.841961 AAGCATGGATGAGGCTAGCA 59.158 50.000 18.24 0.00 42.15 3.49
3387 4537 1.236628 CAAGCATGGATGAGGCTAGC 58.763 55.000 6.04 6.04 42.15 3.42
3420 4570 9.723601 TGCTCATTAATTTGATTTTAGCCTTTT 57.276 25.926 0.00 0.00 0.00 2.27
3421 4571 9.895138 ATGCTCATTAATTTGATTTTAGCCTTT 57.105 25.926 0.00 0.00 0.00 3.11
3422 4572 9.895138 AATGCTCATTAATTTGATTTTAGCCTT 57.105 25.926 0.00 0.00 0.00 4.35
3423 4573 9.895138 AAATGCTCATTAATTTGATTTTAGCCT 57.105 25.926 0.00 0.00 0.00 4.58
3450 4600 9.842775 TGCTCATTGACTTGATTCTAGAATAAT 57.157 29.630 17.94 9.98 0.00 1.28
3451 4601 9.842775 ATGCTCATTGACTTGATTCTAGAATAA 57.157 29.630 17.94 8.27 0.00 1.40
3452 4602 9.842775 AATGCTCATTGACTTGATTCTAGAATA 57.157 29.630 17.94 2.93 0.00 1.75
3453 4603 8.749026 AATGCTCATTGACTTGATTCTAGAAT 57.251 30.769 17.96 17.96 0.00 2.40
3454 4604 8.571461 AAATGCTCATTGACTTGATTCTAGAA 57.429 30.769 7.82 7.82 0.00 2.10
3455 4605 9.842775 ATAAATGCTCATTGACTTGATTCTAGA 57.157 29.630 2.03 0.00 0.00 2.43
3461 4611 9.584008 AGGATAATAAATGCTCATTGACTTGAT 57.416 29.630 0.00 0.00 0.00 2.57
3462 4612 8.985315 AGGATAATAAATGCTCATTGACTTGA 57.015 30.769 0.00 0.00 0.00 3.02
3463 4613 9.674824 GAAGGATAATAAATGCTCATTGACTTG 57.325 33.333 0.00 0.00 0.00 3.16
3464 4614 9.412460 TGAAGGATAATAAATGCTCATTGACTT 57.588 29.630 0.00 0.00 0.00 3.01
3465 4615 8.985315 TGAAGGATAATAAATGCTCATTGACT 57.015 30.769 0.00 0.00 0.00 3.41
3468 4618 9.252962 GGTTTGAAGGATAATAAATGCTCATTG 57.747 33.333 0.00 0.00 0.00 2.82
3469 4619 8.424133 GGGTTTGAAGGATAATAAATGCTCATT 58.576 33.333 0.00 0.00 0.00 2.57
3470 4620 7.786464 AGGGTTTGAAGGATAATAAATGCTCAT 59.214 33.333 0.00 0.00 0.00 2.90
3471 4621 7.125391 AGGGTTTGAAGGATAATAAATGCTCA 58.875 34.615 0.00 0.00 0.00 4.26
3472 4622 7.588497 AGGGTTTGAAGGATAATAAATGCTC 57.412 36.000 0.00 0.00 0.00 4.26
3473 4623 8.502738 TCTAGGGTTTGAAGGATAATAAATGCT 58.497 33.333 0.00 0.00 0.00 3.79
3474 4624 8.691661 TCTAGGGTTTGAAGGATAATAAATGC 57.308 34.615 0.00 0.00 0.00 3.56
3483 4633 9.190317 GTGAATTAATTCTAGGGTTTGAAGGAT 57.810 33.333 24.77 0.00 37.67 3.24
3484 4634 8.167392 TGTGAATTAATTCTAGGGTTTGAAGGA 58.833 33.333 24.77 1.23 37.67 3.36
3485 4635 8.348285 TGTGAATTAATTCTAGGGTTTGAAGG 57.652 34.615 24.77 0.00 37.67 3.46
3538 4688 8.951243 GGCTAAAACTAGTCTTGAGATTGAAAT 58.049 33.333 0.00 0.00 0.00 2.17
3539 4689 7.936847 TGGCTAAAACTAGTCTTGAGATTGAAA 59.063 33.333 0.00 0.00 0.00 2.69
3540 4690 7.387948 GTGGCTAAAACTAGTCTTGAGATTGAA 59.612 37.037 0.00 0.00 0.00 2.69
3541 4691 6.874134 GTGGCTAAAACTAGTCTTGAGATTGA 59.126 38.462 0.00 0.00 0.00 2.57
3542 4692 6.876257 AGTGGCTAAAACTAGTCTTGAGATTG 59.124 38.462 0.00 0.00 0.00 2.67
3543 4693 7.010339 AGTGGCTAAAACTAGTCTTGAGATT 57.990 36.000 0.00 0.00 0.00 2.40
3544 4694 6.439058 AGAGTGGCTAAAACTAGTCTTGAGAT 59.561 38.462 0.00 0.00 0.00 2.75
3545 4695 5.775701 AGAGTGGCTAAAACTAGTCTTGAGA 59.224 40.000 0.00 0.00 0.00 3.27
3546 4696 6.031751 AGAGTGGCTAAAACTAGTCTTGAG 57.968 41.667 0.00 0.00 0.00 3.02
3547 4697 6.420913 AAGAGTGGCTAAAACTAGTCTTGA 57.579 37.500 0.00 0.00 33.01 3.02
3548 4698 7.873505 ACTAAAGAGTGGCTAAAACTAGTCTTG 59.126 37.037 0.00 0.00 34.15 3.02
3549 4699 7.964624 ACTAAAGAGTGGCTAAAACTAGTCTT 58.035 34.615 0.00 0.00 35.06 3.01
3550 4700 7.232941 TGACTAAAGAGTGGCTAAAACTAGTCT 59.767 37.037 0.00 0.00 35.45 3.24
3551 4701 7.376615 TGACTAAAGAGTGGCTAAAACTAGTC 58.623 38.462 0.00 0.00 35.45 2.59
3552 4702 7.299246 TGACTAAAGAGTGGCTAAAACTAGT 57.701 36.000 0.00 0.00 35.45 2.57
3553 4703 8.603242 TTTGACTAAAGAGTGGCTAAAACTAG 57.397 34.615 0.00 0.00 35.45 2.57
3554 4704 7.660208 CCTTTGACTAAAGAGTGGCTAAAACTA 59.340 37.037 1.58 0.00 44.87 2.24
3555 4705 6.486993 CCTTTGACTAAAGAGTGGCTAAAACT 59.513 38.462 1.58 0.00 44.87 2.66
3556 4706 6.262496 ACCTTTGACTAAAGAGTGGCTAAAAC 59.738 38.462 1.58 0.00 44.87 2.43
3557 4707 6.262273 CACCTTTGACTAAAGAGTGGCTAAAA 59.738 38.462 1.58 0.00 44.87 1.52
3558 4708 5.763204 CACCTTTGACTAAAGAGTGGCTAAA 59.237 40.000 1.58 0.00 44.87 1.85
3559 4709 5.305585 CACCTTTGACTAAAGAGTGGCTAA 58.694 41.667 1.58 0.00 44.87 3.09
3560 4710 4.802918 GCACCTTTGACTAAAGAGTGGCTA 60.803 45.833 16.02 0.00 44.87 3.93
3561 4711 3.744660 CACCTTTGACTAAAGAGTGGCT 58.255 45.455 1.58 0.00 44.87 4.75
3562 4712 2.226674 GCACCTTTGACTAAAGAGTGGC 59.773 50.000 16.02 9.41 44.87 5.01
3563 4713 3.744660 AGCACCTTTGACTAAAGAGTGG 58.255 45.455 16.02 0.00 44.87 4.00
3564 4714 4.816385 TCAAGCACCTTTGACTAAAGAGTG 59.184 41.667 12.73 12.73 44.87 3.51
3565 4715 5.036117 TCAAGCACCTTTGACTAAAGAGT 57.964 39.130 1.58 0.00 44.87 3.24
3566 4716 6.038714 ACTTTCAAGCACCTTTGACTAAAGAG 59.961 38.462 0.00 0.00 44.87 2.85
3567 4717 5.885912 ACTTTCAAGCACCTTTGACTAAAGA 59.114 36.000 0.00 0.00 44.87 2.52
3568 4718 6.136541 ACTTTCAAGCACCTTTGACTAAAG 57.863 37.500 0.00 0.00 42.34 1.85
3569 4719 6.524101 AACTTTCAAGCACCTTTGACTAAA 57.476 33.333 0.00 0.00 36.84 1.85
3570 4720 6.524101 AAACTTTCAAGCACCTTTGACTAA 57.476 33.333 0.00 0.00 36.84 2.24
3571 4721 6.238648 GCTAAACTTTCAAGCACCTTTGACTA 60.239 38.462 0.00 0.00 36.84 2.59
3572 4722 5.450550 GCTAAACTTTCAAGCACCTTTGACT 60.451 40.000 0.00 0.00 36.84 3.41
3573 4723 4.740205 GCTAAACTTTCAAGCACCTTTGAC 59.260 41.667 0.00 0.00 36.84 3.18
3574 4724 4.202111 GGCTAAACTTTCAAGCACCTTTGA 60.202 41.667 0.00 0.00 38.01 2.69
3575 4725 4.051237 GGCTAAACTTTCAAGCACCTTTG 58.949 43.478 0.00 0.00 38.01 2.77
3576 4726 3.960755 AGGCTAAACTTTCAAGCACCTTT 59.039 39.130 0.00 0.00 38.01 3.11
3577 4727 3.566351 AGGCTAAACTTTCAAGCACCTT 58.434 40.909 0.00 0.00 38.01 3.50
3578 4728 3.149981 GAGGCTAAACTTTCAAGCACCT 58.850 45.455 0.00 0.00 38.01 4.00
3579 4729 3.149981 AGAGGCTAAACTTTCAAGCACC 58.850 45.455 0.00 0.00 38.01 5.01
3580 4730 4.837896 AAGAGGCTAAACTTTCAAGCAC 57.162 40.909 0.00 0.00 38.01 4.40
3581 4731 6.952773 TTTAAGAGGCTAAACTTTCAAGCA 57.047 33.333 0.00 0.00 38.01 3.91
3622 4772 9.875691 GCTTGGATCCAAAAGATTTATTTTAGT 57.124 29.630 26.87 0.00 34.42 2.24
3623 4773 9.874205 TGCTTGGATCCAAAAGATTTATTTTAG 57.126 29.630 26.87 11.69 34.42 1.85
3624 4774 9.651913 GTGCTTGGATCCAAAAGATTTATTTTA 57.348 29.630 26.87 0.69 34.42 1.52
3625 4775 8.377799 AGTGCTTGGATCCAAAAGATTTATTTT 58.622 29.630 26.87 2.14 34.42 1.82
3626 4776 7.910584 AGTGCTTGGATCCAAAAGATTTATTT 58.089 30.769 26.87 3.42 34.42 1.40
3627 4777 7.398332 AGAGTGCTTGGATCCAAAAGATTTATT 59.602 33.333 26.87 6.99 34.42 1.40
3628 4778 6.894103 AGAGTGCTTGGATCCAAAAGATTTAT 59.106 34.615 26.87 8.68 34.42 1.40
3629 4779 6.248433 AGAGTGCTTGGATCCAAAAGATTTA 58.752 36.000 26.87 3.43 34.42 1.40
3630 4780 5.082425 AGAGTGCTTGGATCCAAAAGATTT 58.918 37.500 26.87 11.33 34.42 2.17
3631 4781 4.670765 AGAGTGCTTGGATCCAAAAGATT 58.329 39.130 26.87 12.33 34.42 2.40
3632 4782 4.018597 AGAGAGTGCTTGGATCCAAAAGAT 60.019 41.667 26.87 14.06 38.17 2.40
3633 4783 3.328931 AGAGAGTGCTTGGATCCAAAAGA 59.671 43.478 26.87 11.56 35.33 2.52
3634 4784 3.683802 AGAGAGTGCTTGGATCCAAAAG 58.316 45.455 26.87 17.79 35.33 2.27
3635 4785 3.795688 AGAGAGTGCTTGGATCCAAAA 57.204 42.857 26.87 15.92 35.33 2.44
3636 4786 3.795688 AAGAGAGTGCTTGGATCCAAA 57.204 42.857 26.87 11.64 35.33 3.28
3637 4787 4.908601 TTAAGAGAGTGCTTGGATCCAA 57.091 40.909 25.53 25.53 0.00 3.53
3638 4788 5.441718 AATTAAGAGAGTGCTTGGATCCA 57.558 39.130 11.44 11.44 0.00 3.41
3639 4789 6.183360 GGAAAATTAAGAGAGTGCTTGGATCC 60.183 42.308 4.20 4.20 0.00 3.36
3640 4790 6.183360 GGGAAAATTAAGAGAGTGCTTGGATC 60.183 42.308 0.00 0.00 0.00 3.36
3641 4791 5.654209 GGGAAAATTAAGAGAGTGCTTGGAT 59.346 40.000 0.00 0.00 0.00 3.41
3642 4792 5.010282 GGGAAAATTAAGAGAGTGCTTGGA 58.990 41.667 0.00 0.00 0.00 3.53
3643 4793 5.012893 AGGGAAAATTAAGAGAGTGCTTGG 58.987 41.667 0.00 0.00 0.00 3.61
3644 4794 7.530863 GTTAGGGAAAATTAAGAGAGTGCTTG 58.469 38.462 0.00 0.00 0.00 4.01
3645 4795 6.371825 CGTTAGGGAAAATTAAGAGAGTGCTT 59.628 38.462 0.00 0.00 0.00 3.91
3646 4796 5.875359 CGTTAGGGAAAATTAAGAGAGTGCT 59.125 40.000 0.00 0.00 0.00 4.40
3647 4797 5.642491 ACGTTAGGGAAAATTAAGAGAGTGC 59.358 40.000 0.00 0.00 0.00 4.40
3648 4798 8.767478 TTACGTTAGGGAAAATTAAGAGAGTG 57.233 34.615 0.00 0.00 0.00 3.51
3649 4799 9.955102 ATTTACGTTAGGGAAAATTAAGAGAGT 57.045 29.630 0.00 0.00 0.00 3.24
3714 4864 1.384082 CTATCCGTCCCCACCCCTT 60.384 63.158 0.00 0.00 0.00 3.95
3715 4865 2.285868 CTATCCGTCCCCACCCCT 59.714 66.667 0.00 0.00 0.00 4.79
3769 4920 0.957888 TGGAATTGCACCAATCGCGA 60.958 50.000 13.09 13.09 32.43 5.87
3788 4939 6.299922 GGGAATCGAGAATAAAGGGAAGAAT 58.700 40.000 0.00 0.00 0.00 2.40
3795 4946 3.142174 GCTGGGGAATCGAGAATAAAGG 58.858 50.000 0.00 0.00 0.00 3.11
3808 4960 2.368311 AAAAGTAAACGGCTGGGGAA 57.632 45.000 0.00 0.00 0.00 3.97
3818 4970 7.578310 AAAGGGGAGAACAGTAAAAGTAAAC 57.422 36.000 0.00 0.00 0.00 2.01
3872 5024 1.299541 AAGCACGTCCAACACTTCAG 58.700 50.000 0.00 0.00 0.00 3.02
3873 5025 1.400142 CAAAGCACGTCCAACACTTCA 59.600 47.619 0.00 0.00 0.00 3.02
3878 5030 0.179150 GCAACAAAGCACGTCCAACA 60.179 50.000 0.00 0.00 0.00 3.33
3888 5040 4.447389 ACATTATGAAAACCGCAACAAAGC 59.553 37.500 0.00 0.00 0.00 3.51
3916 5068 8.630037 CACTTTACATTTTAAAACAGAGGGAGT 58.370 33.333 1.97 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.