Multiple sequence alignment - TraesCS4A01G166500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G166500 chr4A 100.000 4019 0 0 2215 6233 403384830 403388848 0.000000e+00 7422.0
1 TraesCS4A01G166500 chr4A 100.000 1912 0 0 1 1912 403382616 403384527 0.000000e+00 3531.0
2 TraesCS4A01G166500 chr4A 79.610 770 86 42 1 719 678883121 678883870 2.610000e-133 486.0
3 TraesCS4A01G166500 chr4D 93.006 2202 79 21 3257 5450 161260308 161258174 0.000000e+00 3144.0
4 TraesCS4A01G166500 chr4D 95.862 1160 33 6 767 1912 161264556 161263398 0.000000e+00 1862.0
5 TraesCS4A01G166500 chr4D 95.661 945 31 7 2215 3155 161261243 161260305 0.000000e+00 1509.0
6 TraesCS4A01G166500 chr4D 78.571 686 95 25 102 750 77230830 77230160 7.520000e-109 405.0
7 TraesCS4A01G166500 chr4D 77.347 671 102 26 111 750 441260320 441260971 9.940000e-93 351.0
8 TraesCS4A01G166500 chr4D 88.128 219 19 4 5857 6074 161254892 161254680 2.880000e-63 254.0
9 TraesCS4A01G166500 chr4D 91.228 114 8 2 5635 5747 161255181 161255069 3.010000e-33 154.0
10 TraesCS4A01G166500 chr4B 91.469 1606 63 24 3832 5419 340640770 340642319 0.000000e+00 2139.0
11 TraesCS4A01G166500 chr4B 95.177 1161 33 6 754 1912 340637934 340639073 0.000000e+00 1812.0
12 TraesCS4A01G166500 chr4B 94.915 944 34 11 2215 3152 340639136 340640071 0.000000e+00 1465.0
13 TraesCS4A01G166500 chr4B 96.187 577 19 3 3257 3832 340640071 340640645 0.000000e+00 941.0
14 TraesCS4A01G166500 chr4B 86.702 376 42 6 5857 6230 340652190 340652559 1.620000e-110 411.0
15 TraesCS4A01G166500 chr4B 92.571 175 11 2 3520 3693 159637792 159637619 3.730000e-62 250.0
16 TraesCS4A01G166500 chr4B 92.373 118 5 1 5432 5549 340651549 340651662 1.390000e-36 165.0
17 TraesCS4A01G166500 chr4B 94.286 105 5 1 5635 5739 340651896 340651999 6.470000e-35 159.0
18 TraesCS4A01G166500 chr2D 86.873 1196 99 36 754 1912 603791064 603789890 0.000000e+00 1286.0
19 TraesCS4A01G166500 chr2D 85.220 954 96 24 2218 3155 603789817 603788893 0.000000e+00 939.0
20 TraesCS4A01G166500 chr2D 81.910 1183 116 55 3257 4368 603788896 603787741 0.000000e+00 909.0
21 TraesCS4A01G166500 chr2D 85.027 748 65 22 4356 5070 603787679 603786946 0.000000e+00 717.0
22 TraesCS4A01G166500 chr2D 91.304 184 15 1 6048 6230 634989466 634989283 3.730000e-62 250.0
23 TraesCS4A01G166500 chr2D 96.552 116 4 0 3146 3261 65564833 65564718 6.380000e-45 193.0
24 TraesCS4A01G166500 chr2D 83.425 181 23 5 3827 4004 603788514 603788338 1.800000e-35 161.0
25 TraesCS4A01G166500 chr2A 87.020 1171 91 29 776 1912 735869737 735868594 0.000000e+00 1264.0
26 TraesCS4A01G166500 chr2A 84.607 955 94 32 2217 3155 735868522 735867605 0.000000e+00 900.0
27 TraesCS4A01G166500 chr2A 82.222 1125 116 51 3312 4368 735867566 735866458 0.000000e+00 893.0
28 TraesCS4A01G166500 chr2A 80.389 668 61 30 4538 5176 735866080 735865454 1.590000e-120 444.0
29 TraesCS4A01G166500 chr2A 77.795 644 99 23 111 719 111795294 111795928 2.140000e-94 357.0
30 TraesCS4A01G166500 chr2A 87.685 203 19 5 4356 4554 735866394 735866194 1.350000e-56 231.0
31 TraesCS4A01G166500 chr2A 96.694 121 3 1 3154 3274 722814113 722813994 3.810000e-47 200.0
32 TraesCS4A01G166500 chr2A 96.581 117 2 2 3154 3269 576870530 576870415 6.380000e-45 193.0
33 TraesCS4A01G166500 chr2A 84.118 170 17 7 3840 4004 735867218 735867054 8.370000e-34 156.0
34 TraesCS4A01G166500 chr2A 89.091 55 6 0 433 487 40552429 40552375 1.120000e-07 69.4
35 TraesCS4A01G166500 chr2B 90.198 908 56 20 776 1670 734500086 734499199 0.000000e+00 1153.0
36 TraesCS4A01G166500 chr2B 88.177 812 79 12 2355 3155 734498986 734498181 0.000000e+00 952.0
37 TraesCS4A01G166500 chr2B 82.388 846 78 30 4363 5176 734496106 734495300 0.000000e+00 671.0
38 TraesCS4A01G166500 chr2B 86.822 516 52 12 3720 4226 734497729 734497221 4.220000e-156 562.0
39 TraesCS4A01G166500 chr2B 92.571 175 11 2 3520 3693 523785622 523785795 3.730000e-62 250.0
40 TraesCS4A01G166500 chr2B 89.286 196 17 3 4363 4554 734496764 734496569 6.240000e-60 243.0
41 TraesCS4A01G166500 chr2B 100.000 110 0 0 3154 3263 567582016 567581907 2.950000e-48 204.0
42 TraesCS4A01G166500 chr2B 85.294 170 17 6 3840 4004 734497823 734497657 1.070000e-37 169.0
43 TraesCS4A01G166500 chr2B 92.157 102 8 0 4453 4554 734496298 734496197 1.810000e-30 145.0
44 TraesCS4A01G166500 chr2B 80.531 113 15 7 5635 5744 13773704 13773812 5.180000e-11 80.5
45 TraesCS4A01G166500 chr3D 80.103 774 103 25 1 750 442760141 442760887 4.280000e-146 529.0
46 TraesCS4A01G166500 chr3D 79.756 410 51 19 111 499 8687794 8688192 1.030000e-67 268.0
47 TraesCS4A01G166500 chr3D 95.798 119 4 1 3145 3262 419583118 419583000 2.290000e-44 191.0
48 TraesCS4A01G166500 chr3A 79.087 789 106 34 4 750 601550083 601549312 7.260000e-134 488.0
49 TraesCS4A01G166500 chr3A 76.022 734 125 29 58 750 77426548 77427271 3.600000e-87 333.0
50 TraesCS4A01G166500 chr3A 96.639 119 2 2 3150 3267 105947178 105947061 4.930000e-46 196.0
51 TraesCS4A01G166500 chr3A 95.161 124 3 3 3154 3275 585501068 585500946 6.380000e-45 193.0
52 TraesCS4A01G166500 chr7D 80.560 679 90 28 103 750 14555301 14554634 9.390000e-133 484.0
53 TraesCS4A01G166500 chr7D 77.239 681 103 31 111 750 560290868 560290199 9.940000e-93 351.0
54 TraesCS4A01G166500 chr6A 78.639 735 107 32 61 762 543537142 543536425 5.730000e-120 442.0
55 TraesCS4A01G166500 chr6A 91.304 184 15 1 6048 6230 597220858 597221041 3.730000e-62 250.0
56 TraesCS4A01G166500 chr6A 90.000 50 4 1 5685 5733 553919424 553919473 5.220000e-06 63.9
57 TraesCS4A01G166500 chr6D 77.735 786 119 34 1 750 420194218 420194983 1.240000e-116 431.0
58 TraesCS4A01G166500 chr6D 82.439 410 49 13 111 500 396538334 396538740 2.780000e-88 337.0
59 TraesCS4A01G166500 chr6D 93.143 175 10 2 3520 3693 87095679 87095506 8.020000e-64 255.0
60 TraesCS4A01G166500 chr5D 77.899 733 104 29 61 754 409439445 409438732 2.710000e-108 403.0
61 TraesCS4A01G166500 chr5D 76.923 715 108 35 58 750 418943866 418944545 2.760000e-93 353.0
62 TraesCS4A01G166500 chr5D 90.256 195 16 3 6038 6230 555229698 555229891 1.040000e-62 252.0
63 TraesCS4A01G166500 chr1B 82.488 434 55 15 1 415 26858672 26858241 1.650000e-95 361.0
64 TraesCS4A01G166500 chr1B 82.701 422 54 14 8 412 62536500 62536081 2.140000e-94 357.0
65 TraesCS4A01G166500 chr1A 76.322 794 119 29 1 750 571790405 571791173 1.650000e-95 361.0
66 TraesCS4A01G166500 chr1A 76.149 457 89 10 308 750 104887902 104888352 8.130000e-54 222.0
67 TraesCS4A01G166500 chr3B 83.333 312 40 10 111 412 726139925 726139616 1.710000e-70 278.0
68 TraesCS4A01G166500 chr3B 97.368 114 3 0 3154 3267 773046036 773046149 1.770000e-45 195.0
69 TraesCS4A01G166500 chr3B 90.196 51 5 0 5681 5731 744364133 744364183 4.030000e-07 67.6
70 TraesCS4A01G166500 chr5A 81.902 326 49 9 103 422 375220752 375220431 3.700000e-67 267.0
71 TraesCS4A01G166500 chr5B 92.571 175 11 2 3520 3693 588174038 588174211 3.730000e-62 250.0
72 TraesCS4A01G166500 chr5B 92.571 175 11 2 3520 3693 588178132 588178305 3.730000e-62 250.0
73 TraesCS4A01G166500 chr5B 90.811 185 15 2 6048 6230 695891420 695891604 4.830000e-61 246.0
74 TraesCS4A01G166500 chr5B 90.811 185 15 2 6048 6230 713120814 713120630 4.830000e-61 246.0
75 TraesCS4A01G166500 chr1D 91.257 183 15 1 6048 6229 350971096 350971278 1.340000e-61 248.0
76 TraesCS4A01G166500 chrUn 90.811 185 15 2 6048 6230 206792201 206792017 4.830000e-61 246.0
77 TraesCS4A01G166500 chrUn 90.811 185 15 2 6048 6230 246704845 246704661 4.830000e-61 246.0
78 TraesCS4A01G166500 chr7A 77.294 436 74 20 331 750 451514019 451513593 3.760000e-57 233.0
79 TraesCS4A01G166500 chr7A 100.000 107 0 0 3154 3260 609518903 609519009 1.370000e-46 198.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G166500 chr4A 403382616 403388848 6232 False 5476.500000 7422 100.000000 1 6233 2 chr4A.!!$F2 6232
1 TraesCS4A01G166500 chr4A 678883121 678883870 749 False 486.000000 486 79.610000 1 719 1 chr4A.!!$F1 718
2 TraesCS4A01G166500 chr4D 161254680 161264556 9876 True 1384.600000 3144 92.777000 767 6074 5 chr4D.!!$R2 5307
3 TraesCS4A01G166500 chr4D 77230160 77230830 670 True 405.000000 405 78.571000 102 750 1 chr4D.!!$R1 648
4 TraesCS4A01G166500 chr4D 441260320 441260971 651 False 351.000000 351 77.347000 111 750 1 chr4D.!!$F1 639
5 TraesCS4A01G166500 chr4B 340637934 340642319 4385 False 1589.250000 2139 94.437000 754 5419 4 chr4B.!!$F1 4665
6 TraesCS4A01G166500 chr4B 340651549 340652559 1010 False 245.000000 411 91.120333 5432 6230 3 chr4B.!!$F2 798
7 TraesCS4A01G166500 chr2D 603786946 603791064 4118 True 802.400000 1286 84.491000 754 5070 5 chr2D.!!$R3 4316
8 TraesCS4A01G166500 chr2A 735865454 735869737 4283 True 648.000000 1264 84.340167 776 5176 6 chr2A.!!$R4 4400
9 TraesCS4A01G166500 chr2A 111795294 111795928 634 False 357.000000 357 77.795000 111 719 1 chr2A.!!$F1 608
10 TraesCS4A01G166500 chr2B 734495300 734500086 4786 True 556.428571 1153 87.760286 776 5176 7 chr2B.!!$R2 4400
11 TraesCS4A01G166500 chr3D 442760141 442760887 746 False 529.000000 529 80.103000 1 750 1 chr3D.!!$F2 749
12 TraesCS4A01G166500 chr3A 601549312 601550083 771 True 488.000000 488 79.087000 4 750 1 chr3A.!!$R3 746
13 TraesCS4A01G166500 chr3A 77426548 77427271 723 False 333.000000 333 76.022000 58 750 1 chr3A.!!$F1 692
14 TraesCS4A01G166500 chr7D 14554634 14555301 667 True 484.000000 484 80.560000 103 750 1 chr7D.!!$R1 647
15 TraesCS4A01G166500 chr7D 560290199 560290868 669 True 351.000000 351 77.239000 111 750 1 chr7D.!!$R2 639
16 TraesCS4A01G166500 chr6A 543536425 543537142 717 True 442.000000 442 78.639000 61 762 1 chr6A.!!$R1 701
17 TraesCS4A01G166500 chr6D 420194218 420194983 765 False 431.000000 431 77.735000 1 750 1 chr6D.!!$F2 749
18 TraesCS4A01G166500 chr5D 409438732 409439445 713 True 403.000000 403 77.899000 61 754 1 chr5D.!!$R1 693
19 TraesCS4A01G166500 chr5D 418943866 418944545 679 False 353.000000 353 76.923000 58 750 1 chr5D.!!$F1 692
20 TraesCS4A01G166500 chr1A 571790405 571791173 768 False 361.000000 361 76.322000 1 750 1 chr1A.!!$F2 749
21 TraesCS4A01G166500 chr5B 588174038 588178305 4267 False 250.000000 250 92.571000 3520 3693 2 chr5B.!!$F2 173

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
631 880 0.042535 TCGAAAACGCGTGCAGAAAG 60.043 50.0 14.98 0.84 0.00 2.62 F
721 1003 0.523072 GTGACGCTGATTGTTGCCAT 59.477 50.0 0.00 0.00 0.00 4.40 F
1635 1947 0.468958 TTAGCACCCCAAGCTTGCAA 60.469 50.0 21.43 0.00 43.25 4.08 F
3164 5388 0.112412 AAATTGGCACTCCCTCCGTT 59.888 50.0 0.00 0.00 0.00 4.44 F
3171 5395 0.249398 CACTCCCTCCGTTCGGAATT 59.751 55.0 14.79 0.00 33.41 2.17 F
4164 7106 0.953727 TGGCTTGTCACACATTGCTC 59.046 50.0 0.00 0.00 31.65 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1488 1799 0.605589 CAAGAGCTGACTCCTCCGTT 59.394 55.000 0.00 0.00 44.65 4.44 R
1809 2152 1.202879 TGACAAGGAAATTCAGGGCGT 60.203 47.619 0.00 0.00 0.00 5.68 R
3242 5466 0.033796 ATGTACTCCCTCCGTTCGGA 60.034 55.000 13.34 13.34 0.00 4.55 R
4144 6746 1.542915 GAGCAATGTGTGACAAGCCAT 59.457 47.619 0.00 0.00 34.90 4.40 R
4368 7876 3.256383 TGTGCTCAAACAGATGGAAATGG 59.744 43.478 0.00 0.00 0.00 3.16 R
5471 14356 0.450983 GGCTCAGCGTCTAAGTACGT 59.549 55.000 0.00 0.00 44.64 3.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 31 0.748729 AAAAACGAACCGGGAGCACA 60.749 50.000 6.32 0.00 0.00 4.57
59 62 4.697756 CCGAAAGAGGCACGCCCA 62.698 66.667 3.95 0.00 36.58 5.36
160 178 1.134521 ACTCTCGTGAAAGCACAACCA 60.135 47.619 0.00 0.00 45.41 3.67
161 291 1.261619 CTCTCGTGAAAGCACAACCAC 59.738 52.381 0.00 0.00 45.41 4.16
300 437 0.234884 GGAAGCAAAACCGTGACTCG 59.765 55.000 0.00 0.00 39.52 4.18
303 440 0.179094 AGCAAAACCGTGACTCGTGA 60.179 50.000 0.00 0.00 37.94 4.35
389 553 5.668558 GTGTATCTCACGGAAACAAAACT 57.331 39.130 0.00 0.00 37.31 2.66
394 558 4.196193 TCTCACGGAAACAAAACTGTGAT 58.804 39.130 0.00 0.00 46.57 3.06
440 626 2.559698 TTCCATTTTCGAGAGGCACA 57.440 45.000 0.00 0.00 0.00 4.57
478 664 1.279271 AGTAAAACCATGCCTCTCGCT 59.721 47.619 0.00 0.00 38.78 4.93
488 675 0.593128 GCCTCTCGCTGAAGCAAAAA 59.407 50.000 2.79 0.00 42.21 1.94
573 814 6.775594 AAAGCTAAGGAACAGTGAAAAACT 57.224 33.333 0.00 0.00 40.93 2.66
631 880 0.042535 TCGAAAACGCGTGCAGAAAG 60.043 50.000 14.98 0.84 0.00 2.62
638 887 3.455619 ACGCGTGCAGAAAGATAAAAG 57.544 42.857 12.93 0.00 0.00 2.27
639 888 2.159627 ACGCGTGCAGAAAGATAAAAGG 59.840 45.455 12.93 0.00 0.00 3.11
668 950 5.712152 AATTTGAAGGAAGCGTTCAGAAT 57.288 34.783 0.00 0.00 38.99 2.40
719 1001 0.593128 AAGTGACGCTGATTGTTGCC 59.407 50.000 0.00 0.00 0.00 4.52
721 1003 0.523072 GTGACGCTGATTGTTGCCAT 59.477 50.000 0.00 0.00 0.00 4.40
722 1004 1.068333 GTGACGCTGATTGTTGCCATT 60.068 47.619 0.00 0.00 0.00 3.16
725 1007 1.200716 ACGCTGATTGTTGCCATTCTG 59.799 47.619 0.00 0.00 0.00 3.02
739 1021 1.808945 CATTCTGTTGAAGGAGCGCTT 59.191 47.619 13.26 0.00 36.20 4.68
745 1027 2.946329 TGTTGAAGGAGCGCTTGTTAAA 59.054 40.909 13.26 4.76 0.00 1.52
751 1033 3.532542 AGGAGCGCTTGTTAAATAGTCC 58.467 45.455 13.26 3.14 0.00 3.85
752 1034 3.197983 AGGAGCGCTTGTTAAATAGTCCT 59.802 43.478 13.26 5.91 0.00 3.85
774 1056 2.254051 CGAACGTTGGGCGCATTT 59.746 55.556 10.83 0.00 46.11 2.32
878 1165 2.024414 ACACAAAGCCTCTTGTCCAAC 58.976 47.619 0.00 0.00 37.43 3.77
920 1208 1.695893 CGCAACGCACGATCCAGATT 61.696 55.000 0.00 0.00 0.00 2.40
950 1238 0.916809 CCTAACCCTACCCAACCCTG 59.083 60.000 0.00 0.00 0.00 4.45
1192 1492 3.432051 GATGTCTCCCGCCACTCCG 62.432 68.421 0.00 0.00 0.00 4.63
1419 1728 2.751806 CCGTACGGTTTACTCTTCTCCT 59.248 50.000 26.39 0.00 0.00 3.69
1468 1777 7.674471 TGTGACGTGAATGTGGATTTTATAA 57.326 32.000 0.00 0.00 0.00 0.98
1488 1799 3.883830 ATGTGTTTGTGGTTTGCAGAA 57.116 38.095 0.00 0.00 0.00 3.02
1503 1814 0.605589 CAGAAACGGAGGAGTCAGCT 59.394 55.000 0.00 0.00 0.00 4.24
1635 1947 0.468958 TTAGCACCCCAAGCTTGCAA 60.469 50.000 21.43 0.00 43.25 4.08
1663 1975 0.654683 GTTGAGTCATGCTGGCGATC 59.345 55.000 0.00 0.00 0.00 3.69
1697 2009 0.618458 TTAGGGTGTCTGGTGCCATC 59.382 55.000 0.00 0.00 0.00 3.51
1726 2039 2.424956 GGCAATTTGCTCTTGGTAGGAG 59.575 50.000 20.06 0.00 44.28 3.69
1759 2072 9.565090 ACTATTGTTGCATGATTGTAGATGTAT 57.435 29.630 0.00 0.00 0.00 2.29
1809 2152 6.182039 GCTCAGTGCTTTATATTTCACACA 57.818 37.500 0.00 0.00 38.95 3.72
1812 2155 4.788100 CAGTGCTTTATATTTCACACACGC 59.212 41.667 0.00 0.00 32.25 5.34
1862 2205 4.119442 TCCGTGAGTTTCTTATAGCCAC 57.881 45.455 0.00 0.00 0.00 5.01
2338 4545 5.637006 TGTACATGCCAGGTGTTTAATTC 57.363 39.130 0.00 0.00 0.00 2.17
2352 4559 8.879759 AGGTGTTTAATTCAATCAGTATGTACG 58.120 33.333 0.00 0.00 37.40 3.67
2367 4574 1.206132 TGTACGATGTCGCTTTCCCAT 59.794 47.619 1.77 0.00 44.43 4.00
2549 4758 5.499004 TCTGCTAAGGTGATACTTTTGGT 57.501 39.130 0.00 0.00 32.02 3.67
2572 4781 1.075374 TGCTGCCCTGATAACCTGTTT 59.925 47.619 0.00 0.00 0.00 2.83
2816 5033 2.554032 CACATGGGGTTGTCTCTTGAAC 59.446 50.000 0.00 0.00 0.00 3.18
2852 5075 5.986004 ACAAGCTAAGTGTATATTTCCGC 57.014 39.130 0.00 0.00 0.00 5.54
2855 5078 3.069158 AGCTAAGTGTATATTTCCGCGGT 59.931 43.478 27.15 8.80 0.00 5.68
2913 5137 2.157738 GAATGTGCTTCCTTGCAGTCT 58.842 47.619 0.00 0.00 44.20 3.24
2991 5215 6.792250 GTCTTGAGTGTCACATATTTTTGTCG 59.208 38.462 5.62 0.00 0.00 4.35
3013 5237 4.511826 CGTGCCCATCTATTTCCTAACTTC 59.488 45.833 0.00 0.00 0.00 3.01
3023 5247 9.892130 ATCTATTTCCTAACTTCGATTTCTTGT 57.108 29.630 0.00 0.00 0.00 3.16
3053 5277 8.495148 CATTAATTAAGGCCAAGTTTGTCAAAC 58.505 33.333 18.90 18.90 41.69 2.93
3151 5375 9.806203 TGCATTCATGATTCTAAACTAAATTGG 57.194 29.630 0.00 0.00 0.00 3.16
3152 5376 8.758715 GCATTCATGATTCTAAACTAAATTGGC 58.241 33.333 0.00 0.00 0.00 4.52
3153 5377 9.806203 CATTCATGATTCTAAACTAAATTGGCA 57.194 29.630 0.00 0.00 0.00 4.92
3154 5378 9.807649 ATTCATGATTCTAAACTAAATTGGCAC 57.192 29.630 0.00 0.00 0.00 5.01
3155 5379 8.579850 TCATGATTCTAAACTAAATTGGCACT 57.420 30.769 0.00 0.00 0.00 4.40
3156 5380 8.677300 TCATGATTCTAAACTAAATTGGCACTC 58.323 33.333 0.00 0.00 0.00 3.51
3157 5381 7.391148 TGATTCTAAACTAAATTGGCACTCC 57.609 36.000 0.00 0.00 0.00 3.85
3158 5382 6.377146 TGATTCTAAACTAAATTGGCACTCCC 59.623 38.462 0.00 0.00 0.00 4.30
3159 5383 5.514500 TCTAAACTAAATTGGCACTCCCT 57.486 39.130 0.00 0.00 0.00 4.20
3160 5384 5.497474 TCTAAACTAAATTGGCACTCCCTC 58.503 41.667 0.00 0.00 0.00 4.30
3161 5385 2.808906 ACTAAATTGGCACTCCCTCC 57.191 50.000 0.00 0.00 0.00 4.30
3162 5386 1.065418 ACTAAATTGGCACTCCCTCCG 60.065 52.381 0.00 0.00 0.00 4.63
3163 5387 0.988832 TAAATTGGCACTCCCTCCGT 59.011 50.000 0.00 0.00 0.00 4.69
3164 5388 0.112412 AAATTGGCACTCCCTCCGTT 59.888 50.000 0.00 0.00 0.00 4.44
3165 5389 0.322546 AATTGGCACTCCCTCCGTTC 60.323 55.000 0.00 0.00 0.00 3.95
3166 5390 2.521958 ATTGGCACTCCCTCCGTTCG 62.522 60.000 0.00 0.00 0.00 3.95
3167 5391 4.452733 GGCACTCCCTCCGTTCGG 62.453 72.222 4.74 4.74 0.00 4.30
3168 5392 3.379445 GCACTCCCTCCGTTCGGA 61.379 66.667 13.34 13.34 0.00 4.55
3169 5393 2.939261 GCACTCCCTCCGTTCGGAA 61.939 63.158 14.79 0.04 33.41 4.30
3170 5394 1.898154 CACTCCCTCCGTTCGGAAT 59.102 57.895 14.79 0.00 33.41 3.01
3171 5395 0.249398 CACTCCCTCCGTTCGGAATT 59.751 55.000 14.79 0.00 33.41 2.17
3172 5396 1.479323 CACTCCCTCCGTTCGGAATTA 59.521 52.381 14.79 2.82 33.41 1.40
3173 5397 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
3174 5398 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
3175 5399 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
3176 5400 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
3177 5401 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
3178 5402 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
3179 5403 3.368116 CCTCCGTTCGGAATTACTTGTCT 60.368 47.826 14.79 0.00 33.41 3.41
3180 5404 3.841643 TCCGTTCGGAATTACTTGTCTC 58.158 45.455 11.66 0.00 0.00 3.36
3181 5405 2.597305 CCGTTCGGAATTACTTGTCTCG 59.403 50.000 5.19 0.00 0.00 4.04
3182 5406 2.597305 CGTTCGGAATTACTTGTCTCGG 59.403 50.000 0.00 0.00 0.00 4.63
3183 5407 3.671433 CGTTCGGAATTACTTGTCTCGGA 60.671 47.826 0.00 0.00 0.00 4.55
3184 5408 4.430908 GTTCGGAATTACTTGTCTCGGAT 58.569 43.478 0.00 0.00 0.00 4.18
3185 5409 5.585390 GTTCGGAATTACTTGTCTCGGATA 58.415 41.667 0.00 0.00 0.00 2.59
3186 5410 6.214399 GTTCGGAATTACTTGTCTCGGATAT 58.786 40.000 0.00 0.00 0.00 1.63
3187 5411 5.769367 TCGGAATTACTTGTCTCGGATATG 58.231 41.667 0.00 0.00 0.00 1.78
3188 5412 4.923871 CGGAATTACTTGTCTCGGATATGG 59.076 45.833 0.00 0.00 0.00 2.74
3189 5413 5.278808 CGGAATTACTTGTCTCGGATATGGA 60.279 44.000 0.00 0.00 0.00 3.41
3190 5414 6.572509 CGGAATTACTTGTCTCGGATATGGAT 60.573 42.308 0.00 0.00 0.00 3.41
3191 5415 6.591834 GGAATTACTTGTCTCGGATATGGATG 59.408 42.308 0.00 0.00 0.00 3.51
3192 5416 6.672266 ATTACTTGTCTCGGATATGGATGT 57.328 37.500 0.00 0.00 0.00 3.06
3193 5417 7.776618 ATTACTTGTCTCGGATATGGATGTA 57.223 36.000 0.00 0.00 0.00 2.29
3194 5418 7.776618 TTACTTGTCTCGGATATGGATGTAT 57.223 36.000 0.00 0.00 0.00 2.29
3195 5419 6.274157 ACTTGTCTCGGATATGGATGTATC 57.726 41.667 0.00 0.00 0.00 2.24
3196 5420 6.013379 ACTTGTCTCGGATATGGATGTATCT 58.987 40.000 0.00 0.00 32.78 1.98
3197 5421 7.175797 ACTTGTCTCGGATATGGATGTATCTA 58.824 38.462 0.00 0.00 32.78 1.98
3198 5422 7.338196 ACTTGTCTCGGATATGGATGTATCTAG 59.662 40.741 0.00 0.00 32.78 2.43
3199 5423 6.958767 TGTCTCGGATATGGATGTATCTAGA 58.041 40.000 0.00 0.00 32.78 2.43
3200 5424 7.402862 TGTCTCGGATATGGATGTATCTAGAA 58.597 38.462 0.00 0.00 31.35 2.10
3201 5425 7.337184 TGTCTCGGATATGGATGTATCTAGAAC 59.663 40.741 0.00 0.00 31.35 3.01
3202 5426 7.554835 GTCTCGGATATGGATGTATCTAGAACT 59.445 40.741 0.00 0.00 31.35 3.01
3203 5427 8.769359 TCTCGGATATGGATGTATCTAGAACTA 58.231 37.037 0.00 0.00 32.78 2.24
3204 5428 9.397280 CTCGGATATGGATGTATCTAGAACTAA 57.603 37.037 0.00 0.00 32.78 2.24
3205 5429 9.749340 TCGGATATGGATGTATCTAGAACTAAA 57.251 33.333 0.00 0.00 32.78 1.85
3231 5455 9.664332 AATACATCTAGATACATCCATTTCTGC 57.336 33.333 4.54 0.00 0.00 4.26
3232 5456 6.162079 ACATCTAGATACATCCATTTCTGCG 58.838 40.000 4.54 0.00 0.00 5.18
3233 5457 6.015095 ACATCTAGATACATCCATTTCTGCGA 60.015 38.462 4.54 0.00 0.00 5.10
3234 5458 5.773575 TCTAGATACATCCATTTCTGCGAC 58.226 41.667 0.00 0.00 0.00 5.19
3235 5459 4.406648 AGATACATCCATTTCTGCGACA 57.593 40.909 0.00 0.00 0.00 4.35
3236 5460 4.769688 AGATACATCCATTTCTGCGACAA 58.230 39.130 0.00 0.00 0.00 3.18
3237 5461 4.813161 AGATACATCCATTTCTGCGACAAG 59.187 41.667 0.00 0.00 0.00 3.16
3238 5462 2.783135 ACATCCATTTCTGCGACAAGT 58.217 42.857 0.00 0.00 0.00 3.16
3239 5463 3.937814 ACATCCATTTCTGCGACAAGTA 58.062 40.909 0.00 0.00 0.00 2.24
3240 5464 4.323417 ACATCCATTTCTGCGACAAGTAA 58.677 39.130 0.00 0.00 0.00 2.24
3241 5465 4.943705 ACATCCATTTCTGCGACAAGTAAT 59.056 37.500 0.00 0.00 0.00 1.89
3242 5466 5.415701 ACATCCATTTCTGCGACAAGTAATT 59.584 36.000 0.00 0.00 0.00 1.40
3243 5467 5.545658 TCCATTTCTGCGACAAGTAATTC 57.454 39.130 0.00 0.00 0.00 2.17
3244 5468 4.394920 TCCATTTCTGCGACAAGTAATTCC 59.605 41.667 0.00 0.00 0.00 3.01
3245 5469 4.334443 CATTTCTGCGACAAGTAATTCCG 58.666 43.478 0.00 0.00 0.00 4.30
3246 5470 3.306917 TTCTGCGACAAGTAATTCCGA 57.693 42.857 0.00 0.00 0.00 4.55
3247 5471 3.306917 TCTGCGACAAGTAATTCCGAA 57.693 42.857 0.00 0.00 0.00 4.30
3248 5472 2.991190 TCTGCGACAAGTAATTCCGAAC 59.009 45.455 0.00 0.00 0.00 3.95
3249 5473 1.722464 TGCGACAAGTAATTCCGAACG 59.278 47.619 0.00 0.00 0.00 3.95
3250 5474 1.060122 GCGACAAGTAATTCCGAACGG 59.940 52.381 6.94 6.94 0.00 4.44
3251 5475 2.598589 CGACAAGTAATTCCGAACGGA 58.401 47.619 12.04 12.04 43.52 4.69
3252 5476 2.597305 CGACAAGTAATTCCGAACGGAG 59.403 50.000 15.34 5.60 46.06 4.63
3253 5477 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
3254 5478 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
3255 5479 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
3402 5628 7.810282 GCTATGAATGTTACTATGACAGATCGT 59.190 37.037 0.00 0.00 0.00 3.73
3443 5669 4.195416 GCCAAATTTTTCCACAAGGTGAA 58.805 39.130 0.00 0.00 35.23 3.18
3494 5721 1.141858 GGCTCTTGACTTCCTATGGGG 59.858 57.143 0.00 0.00 0.00 4.96
3518 5745 9.477484 GGGAGTTACTTTCTGTATGTGTATATG 57.523 37.037 0.00 0.00 0.00 1.78
3537 5764 9.549078 TGTATATGTTGTCAACTTCTGTAACAA 57.451 29.630 16.45 0.00 37.03 2.83
3742 6007 9.113838 GTTCCATTTAGATTCATGGCGATATAT 57.886 33.333 0.00 0.00 40.03 0.86
3774 6039 7.542477 TCTGAGTCTTTAGAATGTCGTCAAATC 59.458 37.037 0.00 0.00 0.00 2.17
3896 6298 3.514645 GGTTTGCAATATGCCTCTGTTG 58.485 45.455 0.00 0.00 44.23 3.33
3986 6388 7.561356 TCTGAGTCTTTAGGATGTCATCACATA 59.439 37.037 14.72 1.95 43.79 2.29
3998 6400 9.445878 GGATGTCATCACATATTATGAGAACAT 57.554 33.333 14.72 15.42 43.79 2.71
4144 6746 8.815565 TTAAATTCTACATGGGCATTGACTTA 57.184 30.769 0.00 0.00 0.00 2.24
4164 7106 0.953727 TGGCTTGTCACACATTGCTC 59.046 50.000 0.00 0.00 31.65 4.26
4353 7788 7.890515 TGAGAGCTACATGAAGTAATCCTATG 58.109 38.462 0.00 0.00 30.92 2.23
4368 7876 9.712305 AGTAATCCTATGTCACATTATACTTGC 57.288 33.333 0.00 0.00 0.00 4.01
4442 8619 9.219603 CTTATCTTCACACCTTTTATCTTGTGA 57.780 33.333 0.00 0.00 45.08 3.58
4557 9406 8.049117 TGAAAAGTTGGATATGAGAGCTATGTT 58.951 33.333 0.00 0.00 0.00 2.71
4591 9469 7.961326 ATTTATTTTGGCAGATCTAACCTGT 57.039 32.000 13.60 2.47 34.29 4.00
4675 10842 7.308830 GCTCAGTGATTTCAGTCCAATACTTTT 60.309 37.037 0.00 0.00 35.76 2.27
4808 11013 5.779771 TCCAAATGCTTTTGAGAAATAGGGT 59.220 36.000 22.76 0.00 44.11 4.34
4815 11020 7.209475 TGCTTTTGAGAAATAGGGTTTTTCAG 58.791 34.615 0.00 0.00 35.90 3.02
5062 11279 7.009540 GCAACTTAATACATTGTTCATTCAGGC 59.990 37.037 0.00 0.00 0.00 4.85
5064 11281 8.353423 ACTTAATACATTGTTCATTCAGGCTT 57.647 30.769 0.00 0.00 0.00 4.35
5065 11282 9.461312 ACTTAATACATTGTTCATTCAGGCTTA 57.539 29.630 0.00 0.00 0.00 3.09
5070 11287 6.996509 ACATTGTTCATTCAGGCTTATGTTT 58.003 32.000 6.33 0.00 0.00 2.83
5071 11288 8.121305 ACATTGTTCATTCAGGCTTATGTTTA 57.879 30.769 6.33 0.00 0.00 2.01
5072 11289 8.752187 ACATTGTTCATTCAGGCTTATGTTTAT 58.248 29.630 6.33 0.00 0.00 1.40
5075 11292 8.800370 TGTTCATTCAGGCTTATGTTTATACA 57.200 30.769 6.33 0.00 38.95 2.29
5076 11293 9.407380 TGTTCATTCAGGCTTATGTTTATACAT 57.593 29.630 4.19 4.19 46.49 2.29
5079 11296 9.407380 TCATTCAGGCTTATGTTTATACATTGT 57.593 29.630 4.06 0.00 42.29 2.71
5082 11299 8.800370 TCAGGCTTATGTTTATACATTGTTCA 57.200 30.769 4.06 0.00 42.29 3.18
5083 11300 9.407380 TCAGGCTTATGTTTATACATTGTTCAT 57.593 29.630 4.06 0.00 42.29 2.57
5196 11413 3.084039 CCTATCTTGTTTCAGGCTGCAA 58.916 45.455 10.34 1.53 0.00 4.08
5343 11562 4.037208 GGAGATGCTTAAATGGGTGACATG 59.963 45.833 0.00 0.00 40.44 3.21
5351 11570 0.112995 ATGGGTGACATGGTGTTGCT 59.887 50.000 0.00 0.00 38.70 3.91
5368 11591 4.881273 TGTTGCTCTGTCAGTGTTGTTTAT 59.119 37.500 0.00 0.00 0.00 1.40
5421 11644 6.018425 GTCCATTCTGCTGAACATAGTACATG 60.018 42.308 8.32 0.00 34.71 3.21
5427 11650 3.185188 GCTGAACATAGTACATGGATGCG 59.815 47.826 0.00 0.00 0.00 4.73
5460 14345 5.163663 TGTTGTAGTTTTGTCAAGCTCAAGG 60.164 40.000 0.00 0.00 0.00 3.61
5465 14350 7.665559 TGTAGTTTTGTCAAGCTCAAGGATTAT 59.334 33.333 0.00 0.00 0.00 1.28
5470 14355 8.579850 TTTGTCAAGCTCAAGGATTATATGTT 57.420 30.769 0.00 0.00 0.00 2.71
5471 14356 9.679661 TTTGTCAAGCTCAAGGATTATATGTTA 57.320 29.630 0.00 0.00 0.00 2.41
5472 14357 8.662781 TGTCAAGCTCAAGGATTATATGTTAC 57.337 34.615 0.00 0.00 0.00 2.50
5473 14358 7.438160 TGTCAAGCTCAAGGATTATATGTTACG 59.562 37.037 0.00 0.00 0.00 3.18
5506 14391 1.577736 AGCCTACTGAGACATTGGCT 58.422 50.000 0.00 0.00 44.90 4.75
5549 14434 8.853077 TGGATTTCCAGTCATATAAATGCTAG 57.147 34.615 0.00 0.00 42.01 3.42
5551 14436 8.725148 GGATTTCCAGTCATATAAATGCTAGTG 58.275 37.037 0.00 0.00 35.64 2.74
5565 14535 7.814264 AAATGCTAGTGTATAGGTACGTACT 57.186 36.000 24.07 13.10 33.36 2.73
5570 14540 3.629398 AGTGTATAGGTACGTACTGCCAC 59.371 47.826 24.07 20.40 33.36 5.01
5580 14550 4.281898 ACGTACTGCCACCTTCTAAAAT 57.718 40.909 0.00 0.00 0.00 1.82
5630 14601 5.069648 TGGATTCCAAACTTACATGTGCAAA 59.930 36.000 9.11 0.00 0.00 3.68
5774 14842 5.063564 CCTTTTCTAAAGCGTCATGGTCTAC 59.936 44.000 0.00 0.00 0.00 2.59
5776 14844 2.751259 TCTAAAGCGTCATGGTCTACGT 59.249 45.455 6.54 0.00 41.10 3.57
5777 14845 1.710013 AAAGCGTCATGGTCTACGTG 58.290 50.000 0.00 0.00 41.10 4.49
5778 14846 0.108804 AAGCGTCATGGTCTACGTGG 60.109 55.000 0.00 0.00 41.10 4.94
5779 14847 1.518572 GCGTCATGGTCTACGTGGG 60.519 63.158 0.00 0.00 41.10 4.61
5780 14848 1.518572 CGTCATGGTCTACGTGGGC 60.519 63.158 0.00 0.00 36.71 5.36
5781 14849 1.518572 GTCATGGTCTACGTGGGCG 60.519 63.158 0.00 0.00 44.93 6.13
5791 14859 2.943653 CGTGGGCGTTTCCAAGTC 59.056 61.111 0.00 0.00 38.72 3.01
5802 14870 3.203716 GTTTCCAAGTCGAAGTCCAGTT 58.796 45.455 0.00 0.00 0.00 3.16
5811 14881 4.941873 AGTCGAAGTCCAGTTTTCACTTTT 59.058 37.500 0.00 0.00 30.32 2.27
5827 14897 4.458989 TCACTTTTCCATCATCCCTTTTCG 59.541 41.667 0.00 0.00 0.00 3.46
5887 15001 5.072129 TCTCCATGACCTGAGATCACTAT 57.928 43.478 0.00 0.00 32.84 2.12
5897 15011 7.819415 TGACCTGAGATCACTATACAAAAACAG 59.181 37.037 0.00 0.00 0.00 3.16
5966 15080 9.835389 ATGAAACTTCCTTTGAAATGAATGAAA 57.165 25.926 0.00 0.00 0.00 2.69
5967 15081 9.835389 TGAAACTTCCTTTGAAATGAATGAAAT 57.165 25.926 0.00 0.00 0.00 2.17
5976 15090 9.654417 CTTTGAAATGAATGAAATGAAAACCAC 57.346 29.630 0.00 0.00 0.00 4.16
5979 15093 7.871973 TGAAATGAATGAAATGAAAACCACGAT 59.128 29.630 0.00 0.00 0.00 3.73
5990 15104 0.327924 AACCACGATCATGCCTCCAA 59.672 50.000 0.00 0.00 0.00 3.53
6007 15121 5.132897 CTCCAATAGGAAGATCGAGGAAG 57.867 47.826 0.00 0.00 45.19 3.46
6008 15122 4.547671 TCCAATAGGAAGATCGAGGAAGT 58.452 43.478 0.00 0.00 42.23 3.01
6032 15146 2.268920 GGCGCTCCTGGTTCATGA 59.731 61.111 7.64 0.00 0.00 3.07
6041 15155 4.222336 CTCCTGGTTCATGAGATCCTAGT 58.778 47.826 12.55 0.00 35.14 2.57
6046 15161 3.898123 GGTTCATGAGATCCTAGTGGCTA 59.102 47.826 0.00 0.00 32.00 3.93
6069 15184 2.117423 CAAAGAAAGGGGGCGGGT 59.883 61.111 0.00 0.00 0.00 5.28
6079 15194 1.596408 GGGGCGGGTCGTTTACTTA 59.404 57.895 0.00 0.00 0.00 2.24
6094 15209 6.629649 TCGTTTACTTAAAAATGACAACTGCG 59.370 34.615 0.00 0.00 31.13 5.18
6097 15212 4.041723 ACTTAAAAATGACAACTGCGTGC 58.958 39.130 0.00 0.00 0.00 5.34
6134 15249 0.863144 GCACGAAAGCAAACCTACGA 59.137 50.000 0.00 0.00 0.00 3.43
6165 15280 1.620323 GTTGCTTTCTTTGATGGGCCT 59.380 47.619 4.53 0.00 0.00 5.19
6167 15282 3.168035 TGCTTTCTTTGATGGGCCTAA 57.832 42.857 4.53 0.00 0.00 2.69
6172 15287 3.582998 TCTTTGATGGGCCTAATGAGG 57.417 47.619 4.53 0.00 46.93 3.86
6203 15318 5.390387 TGCCCATTAGTTCTTACCAACTTT 58.610 37.500 0.00 0.00 37.75 2.66
6212 15327 7.128234 AGTTCTTACCAACTTTAGGTGTGTA 57.872 36.000 0.00 0.00 40.26 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 40 0.949105 GCGTGCCTCTTTCGGAAAGA 60.949 55.000 26.61 26.61 44.82 2.52
59 62 2.744202 GTTGTGATTTCGTGAGAGGCAT 59.256 45.455 0.00 0.00 43.69 4.40
160 178 2.734591 TGCTTCCGCAAGAGTCGT 59.265 55.556 0.00 0.00 44.62 4.34
180 310 1.209383 CTTTCGCGAGAGTCACGGA 59.791 57.895 17.92 4.81 43.69 4.69
247 384 2.871182 TATGCTTTCGCGAGAGTCAT 57.129 45.000 26.73 26.73 43.69 3.06
325 488 1.218316 GGTCGTGCCTCTCGGAAAT 59.782 57.895 0.00 0.00 0.00 2.17
341 504 2.222592 CTTTCGCGAAAGTCACGGT 58.777 52.632 40.16 0.00 42.02 4.83
371 535 4.196193 TCACAGTTTTGTTTCCGTGAGAT 58.804 39.130 0.00 0.00 34.62 2.75
376 540 4.260620 CGAGAATCACAGTTTTGTTTCCGT 60.261 41.667 0.00 0.00 34.62 4.69
382 546 5.584649 TCTTTCACGAGAATCACAGTTTTGT 59.415 36.000 0.00 0.00 33.68 2.83
448 634 4.464112 GCATGGTTTTACTTTCGTGAGAC 58.536 43.478 0.00 0.00 41.84 3.36
478 664 6.483974 TCATAAGAGTTACGGTTTTTGCTTCA 59.516 34.615 0.00 0.00 0.00 3.02
488 675 5.750352 TTCCCTTTCATAAGAGTTACGGT 57.250 39.130 0.00 0.00 32.92 4.83
545 783 9.930693 TTTTTCACTGTTCCTTAGCTTTTTAAA 57.069 25.926 0.00 0.00 0.00 1.52
638 887 4.808895 ACGCTTCCTTCAAATTTTGTTTCC 59.191 37.500 8.89 0.00 0.00 3.13
639 888 5.966636 ACGCTTCCTTCAAATTTTGTTTC 57.033 34.783 8.89 0.00 0.00 2.78
668 950 1.958715 CCATTCGCCACGTGTCACA 60.959 57.895 15.65 0.00 0.00 3.58
719 1001 1.446907 AGCGCTCCTTCAACAGAATG 58.553 50.000 2.64 0.00 46.00 2.67
721 1003 1.229428 CAAGCGCTCCTTCAACAGAA 58.771 50.000 12.06 0.00 0.00 3.02
722 1004 0.106708 ACAAGCGCTCCTTCAACAGA 59.893 50.000 12.06 0.00 0.00 3.41
725 1007 3.619233 TTTAACAAGCGCTCCTTCAAC 57.381 42.857 12.06 0.00 0.00 3.18
739 1021 3.853831 TCGCACGAGGACTATTTAACA 57.146 42.857 0.00 0.00 0.00 2.41
773 1055 3.202829 AGAACTACGGGCTGAAACAAA 57.797 42.857 0.00 0.00 0.00 2.83
774 1056 2.875933 CAAGAACTACGGGCTGAAACAA 59.124 45.455 0.00 0.00 0.00 2.83
878 1165 1.648467 GAGCAAAACCCTAGCTGCGG 61.648 60.000 0.00 0.00 39.02 5.69
920 1208 3.310141 GGTAGGGTTAGGGAAGTGTAGGA 60.310 52.174 0.00 0.00 0.00 2.94
983 1271 1.744368 ATCTTGCCGCTGACTGCTG 60.744 57.895 2.66 0.00 40.11 4.41
1419 1728 6.494952 ACTAGACATCTAGAAACTTCCAGGA 58.505 40.000 20.37 0.00 46.80 3.86
1468 1777 3.883830 TTCTGCAAACCACAAACACAT 57.116 38.095 0.00 0.00 0.00 3.21
1488 1799 0.605589 CAAGAGCTGACTCCTCCGTT 59.394 55.000 0.00 0.00 44.65 4.44
1503 1814 1.134699 GTGATGCCGGAGATCACAAGA 60.135 52.381 28.92 4.98 46.10 3.02
1635 1947 4.562347 CCAGCATGACTCAACAAGACTACT 60.562 45.833 0.00 0.00 39.69 2.57
1663 1975 2.505819 ACCCTAATAGGCCACAGAACTG 59.494 50.000 5.01 0.00 32.73 3.16
1697 2009 2.440409 AGAGCAAATTGCCACAGGTAG 58.560 47.619 15.04 0.00 46.52 3.18
1809 2152 1.202879 TGACAAGGAAATTCAGGGCGT 60.203 47.619 0.00 0.00 0.00 5.68
1812 2155 3.194116 CCACATGACAAGGAAATTCAGGG 59.806 47.826 0.00 0.00 0.00 4.45
1862 2205 4.278170 TGCTGTGTTAATTCAAGGAGTTGG 59.722 41.667 0.00 0.00 34.09 3.77
2263 4467 6.127897 GCATGTAAACTTTGCAGGAGATAACT 60.128 38.462 8.24 0.00 36.40 2.24
2338 4545 4.290969 AGCGACATCGTACATACTGATTG 58.709 43.478 2.85 0.00 42.22 2.67
2352 4559 3.913089 ACAAAAATGGGAAAGCGACATC 58.087 40.909 0.00 0.00 0.00 3.06
2357 4564 5.410067 ACATCATACAAAAATGGGAAAGCG 58.590 37.500 0.00 0.00 0.00 4.68
2367 4574 9.486497 ACATAAATGCACAACATCATACAAAAA 57.514 25.926 0.00 0.00 38.34 1.94
2549 4758 2.509548 ACAGGTTATCAGGGCAGCAATA 59.490 45.455 0.00 0.00 0.00 1.90
2816 5033 7.012421 ACACTTAGCTTGTAAAAAGACCAAGAG 59.988 37.037 0.00 0.00 38.23 2.85
2852 5075 6.747280 GTCAATCCAAACTTCATAATTGACCG 59.253 38.462 12.67 0.00 43.38 4.79
2887 5110 1.466167 CAAGGAAGCACATTCTGGACG 59.534 52.381 0.00 0.00 38.07 4.79
2913 5137 8.527810 CAACTTCATTAATTACCAAAAGGGCTA 58.472 33.333 0.00 0.00 42.05 3.93
2991 5215 4.511826 CGAAGTTAGGAAATAGATGGGCAC 59.488 45.833 0.00 0.00 0.00 5.01
3013 5237 9.226345 GCCTTAATTAATGAGAACAAGAAATCG 57.774 33.333 4.83 0.00 0.00 3.34
3023 5247 8.189119 ACAAACTTGGCCTTAATTAATGAGAA 57.811 30.769 3.32 0.00 0.00 2.87
3053 5277 5.163513 GCAAAGGAATCATGGTTTACACAG 58.836 41.667 0.00 0.00 0.00 3.66
3140 5364 3.431415 GGAGGGAGTGCCAATTTAGTTT 58.569 45.455 2.50 0.00 35.15 2.66
3151 5375 2.240162 ATTCCGAACGGAGGGAGTGC 62.240 60.000 15.34 0.00 46.06 4.40
3152 5376 0.249398 AATTCCGAACGGAGGGAGTG 59.751 55.000 15.34 0.00 46.06 3.51
3153 5377 1.479730 GTAATTCCGAACGGAGGGAGT 59.520 52.381 15.34 4.12 46.06 3.85
3154 5378 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
3155 5379 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
3156 5380 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
3157 5381 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
3158 5382 3.846360 AGACAAGTAATTCCGAACGGAG 58.154 45.455 15.34 5.60 46.06 4.63
3159 5383 3.671433 CGAGACAAGTAATTCCGAACGGA 60.671 47.826 12.04 12.04 43.52 4.69
3160 5384 2.597305 CGAGACAAGTAATTCCGAACGG 59.403 50.000 6.94 6.94 0.00 4.44
3161 5385 2.597305 CCGAGACAAGTAATTCCGAACG 59.403 50.000 0.00 0.00 0.00 3.95
3162 5386 3.841643 TCCGAGACAAGTAATTCCGAAC 58.158 45.455 0.00 0.00 0.00 3.95
3163 5387 4.730949 ATCCGAGACAAGTAATTCCGAA 57.269 40.909 0.00 0.00 0.00 4.30
3164 5388 5.278808 CCATATCCGAGACAAGTAATTCCGA 60.279 44.000 0.00 0.00 0.00 4.55
3165 5389 4.923871 CCATATCCGAGACAAGTAATTCCG 59.076 45.833 0.00 0.00 0.00 4.30
3166 5390 6.097915 TCCATATCCGAGACAAGTAATTCC 57.902 41.667 0.00 0.00 0.00 3.01
3167 5391 7.155328 ACATCCATATCCGAGACAAGTAATTC 58.845 38.462 0.00 0.00 0.00 2.17
3168 5392 7.067496 ACATCCATATCCGAGACAAGTAATT 57.933 36.000 0.00 0.00 0.00 1.40
3169 5393 6.672266 ACATCCATATCCGAGACAAGTAAT 57.328 37.500 0.00 0.00 0.00 1.89
3170 5394 7.670140 AGATACATCCATATCCGAGACAAGTAA 59.330 37.037 0.00 0.00 32.76 2.24
3171 5395 7.175797 AGATACATCCATATCCGAGACAAGTA 58.824 38.462 0.00 0.00 32.76 2.24
3172 5396 6.013379 AGATACATCCATATCCGAGACAAGT 58.987 40.000 0.00 0.00 32.76 3.16
3173 5397 6.522625 AGATACATCCATATCCGAGACAAG 57.477 41.667 0.00 0.00 32.76 3.16
3174 5398 7.402862 TCTAGATACATCCATATCCGAGACAA 58.597 38.462 0.00 0.00 32.76 3.18
3175 5399 6.958767 TCTAGATACATCCATATCCGAGACA 58.041 40.000 0.00 0.00 32.76 3.41
3176 5400 7.554835 AGTTCTAGATACATCCATATCCGAGAC 59.445 40.741 0.00 0.00 32.76 3.36
3177 5401 7.634718 AGTTCTAGATACATCCATATCCGAGA 58.365 38.462 0.00 0.00 32.76 4.04
3178 5402 7.873719 AGTTCTAGATACATCCATATCCGAG 57.126 40.000 0.00 0.00 32.76 4.63
3179 5403 9.749340 TTTAGTTCTAGATACATCCATATCCGA 57.251 33.333 0.00 0.00 32.76 4.55
3205 5429 9.664332 GCAGAAATGGATGTATCTAGATGTATT 57.336 33.333 15.79 4.32 0.00 1.89
3206 5430 7.978414 CGCAGAAATGGATGTATCTAGATGTAT 59.022 37.037 15.79 9.11 0.00 2.29
3207 5431 7.176690 TCGCAGAAATGGATGTATCTAGATGTA 59.823 37.037 15.79 4.44 0.00 2.29
3208 5432 6.015095 TCGCAGAAATGGATGTATCTAGATGT 60.015 38.462 15.79 1.25 0.00 3.06
3209 5433 6.309980 GTCGCAGAAATGGATGTATCTAGATG 59.690 42.308 15.79 0.00 39.69 2.90
3210 5434 6.015095 TGTCGCAGAAATGGATGTATCTAGAT 60.015 38.462 10.73 10.73 39.69 1.98
3211 5435 5.301805 TGTCGCAGAAATGGATGTATCTAGA 59.698 40.000 0.00 0.00 39.69 2.43
3212 5436 5.532557 TGTCGCAGAAATGGATGTATCTAG 58.467 41.667 0.00 0.00 39.69 2.43
3213 5437 5.529581 TGTCGCAGAAATGGATGTATCTA 57.470 39.130 0.00 0.00 39.69 1.98
3214 5438 4.406648 TGTCGCAGAAATGGATGTATCT 57.593 40.909 0.00 0.00 39.69 1.98
3215 5439 4.572389 ACTTGTCGCAGAAATGGATGTATC 59.428 41.667 0.00 0.00 39.69 2.24
3216 5440 4.517285 ACTTGTCGCAGAAATGGATGTAT 58.483 39.130 0.00 0.00 39.69 2.29
3217 5441 3.937814 ACTTGTCGCAGAAATGGATGTA 58.062 40.909 0.00 0.00 39.69 2.29
3218 5442 2.783135 ACTTGTCGCAGAAATGGATGT 58.217 42.857 0.00 0.00 39.69 3.06
3219 5443 4.944962 TTACTTGTCGCAGAAATGGATG 57.055 40.909 0.00 0.00 39.69 3.51
3220 5444 5.066505 GGAATTACTTGTCGCAGAAATGGAT 59.933 40.000 0.00 0.00 39.69 3.41
3221 5445 4.394920 GGAATTACTTGTCGCAGAAATGGA 59.605 41.667 0.00 0.00 39.69 3.41
3222 5446 4.662145 GGAATTACTTGTCGCAGAAATGG 58.338 43.478 0.00 0.00 39.69 3.16
3223 5447 4.092821 TCGGAATTACTTGTCGCAGAAATG 59.907 41.667 0.00 0.00 39.69 2.32
3224 5448 4.250464 TCGGAATTACTTGTCGCAGAAAT 58.750 39.130 0.00 0.00 39.69 2.17
3225 5449 3.655486 TCGGAATTACTTGTCGCAGAAA 58.345 40.909 0.00 0.00 39.69 2.52
3226 5450 3.306917 TCGGAATTACTTGTCGCAGAA 57.693 42.857 0.00 0.00 39.69 3.02
3227 5451 2.991190 GTTCGGAATTACTTGTCGCAGA 59.009 45.455 0.00 0.00 0.00 4.26
3228 5452 2.222508 CGTTCGGAATTACTTGTCGCAG 60.223 50.000 0.00 0.00 0.00 5.18
3229 5453 1.722464 CGTTCGGAATTACTTGTCGCA 59.278 47.619 0.00 0.00 0.00 5.10
3230 5454 1.060122 CCGTTCGGAATTACTTGTCGC 59.940 52.381 5.19 0.00 0.00 5.19
3231 5455 2.597305 CTCCGTTCGGAATTACTTGTCG 59.403 50.000 14.79 0.00 33.41 4.35
3232 5456 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
3233 5457 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
3234 5458 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
3235 5459 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
3236 5460 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
3237 5461 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
3238 5462 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
3239 5463 1.479730 GTACTCCCTCCGTTCGGAATT 59.520 52.381 14.79 0.00 33.41 2.17
3240 5464 1.109609 GTACTCCCTCCGTTCGGAAT 58.890 55.000 14.79 2.09 33.41 3.01
3241 5465 0.251297 TGTACTCCCTCCGTTCGGAA 60.251 55.000 14.79 0.04 33.41 4.30
3242 5466 0.033796 ATGTACTCCCTCCGTTCGGA 60.034 55.000 13.34 13.34 0.00 4.55
3243 5467 0.822164 AATGTACTCCCTCCGTTCGG 59.178 55.000 4.74 4.74 0.00 4.30
3244 5468 5.443185 TTATAATGTACTCCCTCCGTTCG 57.557 43.478 0.00 0.00 0.00 3.95
3245 5469 6.164176 CCATTATAATGTACTCCCTCCGTTC 58.836 44.000 21.20 0.00 34.60 3.95
3246 5470 5.605488 ACCATTATAATGTACTCCCTCCGTT 59.395 40.000 21.20 0.00 34.60 4.44
3247 5471 5.152934 ACCATTATAATGTACTCCCTCCGT 58.847 41.667 21.20 7.53 34.60 4.69
3248 5472 5.480772 AGACCATTATAATGTACTCCCTCCG 59.519 44.000 21.20 6.99 34.60 4.63
3249 5473 6.936968 AGACCATTATAATGTACTCCCTCC 57.063 41.667 21.20 3.17 34.60 4.30
3402 5628 1.810151 GCCTCAAATTTACCAGCACGA 59.190 47.619 0.00 0.00 0.00 4.35
3518 5745 8.798153 CAAAATCTTGTTACAGAAGTTGACAAC 58.202 33.333 10.47 10.47 32.64 3.32
3742 6007 6.975197 CGACATTCTAAAGACTCAGAATAGCA 59.025 38.462 10.43 0.00 39.02 3.49
3761 6026 9.166173 TCTGATTTCATAAGATTTGACGACATT 57.834 29.630 0.00 0.00 0.00 2.71
3864 6265 1.464734 TTGCAAACCCAACGTGAGAA 58.535 45.000 0.00 0.00 0.00 2.87
3896 6298 4.574013 AGCAGATTTTAGCATACTCAGTGC 59.426 41.667 0.00 0.00 42.81 4.40
4144 6746 1.542915 GAGCAATGTGTGACAAGCCAT 59.457 47.619 0.00 0.00 34.90 4.40
4164 7106 4.211164 TGTCACAAACAGATAGCAAAGACG 59.789 41.667 0.00 0.00 32.81 4.18
4353 7788 6.449635 TGGAAATGGCAAGTATAATGTGAC 57.550 37.500 0.00 0.00 0.00 3.67
4368 7876 3.256383 TGTGCTCAAACAGATGGAAATGG 59.744 43.478 0.00 0.00 0.00 3.16
4591 9469 6.809689 CACAAGAAAGCATGATCAAGCAATTA 59.190 34.615 23.62 0.00 0.00 1.40
4983 11200 5.819991 TGAGCCTTACCTTGAGAAATTCAT 58.180 37.500 0.00 0.00 35.27 2.57
5067 11284 8.970691 AAGCACTGAATGAACAATGTATAAAC 57.029 30.769 0.00 0.00 0.00 2.01
5070 11287 9.624697 GAAAAAGCACTGAATGAACAATGTATA 57.375 29.630 0.00 0.00 0.00 1.47
5071 11288 8.362639 AGAAAAAGCACTGAATGAACAATGTAT 58.637 29.630 0.00 0.00 0.00 2.29
5072 11289 7.715657 AGAAAAAGCACTGAATGAACAATGTA 58.284 30.769 0.00 0.00 0.00 2.29
5073 11290 6.576185 AGAAAAAGCACTGAATGAACAATGT 58.424 32.000 0.00 0.00 0.00 2.71
5074 11291 7.223193 TCAAGAAAAAGCACTGAATGAACAATG 59.777 33.333 0.00 0.00 0.00 2.82
5075 11292 7.267128 TCAAGAAAAAGCACTGAATGAACAAT 58.733 30.769 0.00 0.00 0.00 2.71
5076 11293 6.629128 TCAAGAAAAAGCACTGAATGAACAA 58.371 32.000 0.00 0.00 0.00 2.83
5077 11294 6.206395 TCAAGAAAAAGCACTGAATGAACA 57.794 33.333 0.00 0.00 0.00 3.18
5078 11295 5.174579 GCTCAAGAAAAAGCACTGAATGAAC 59.825 40.000 0.00 0.00 38.42 3.18
5079 11296 5.163530 TGCTCAAGAAAAAGCACTGAATGAA 60.164 36.000 0.00 0.00 43.30 2.57
5080 11297 4.338964 TGCTCAAGAAAAAGCACTGAATGA 59.661 37.500 0.00 0.00 43.30 2.57
5081 11298 4.613944 TGCTCAAGAAAAAGCACTGAATG 58.386 39.130 0.00 0.00 43.30 2.67
5082 11299 4.924305 TGCTCAAGAAAAAGCACTGAAT 57.076 36.364 0.00 0.00 43.30 2.57
5114 11331 6.448053 TTTCGAAACAACATAGAAGACGAG 57.552 37.500 6.47 0.00 0.00 4.18
5196 11413 3.117054 GGGTACTAGGGAGGTCTCTCAAT 60.117 52.174 0.32 0.00 41.69 2.57
5267 11484 5.900123 ACATAGTAGACCATCCAGCTAAGTT 59.100 40.000 0.00 0.00 0.00 2.66
5343 11562 1.331756 CAACACTGACAGAGCAACACC 59.668 52.381 10.08 0.00 0.00 4.16
5351 11570 7.094162 TGTTTTGGAATAAACAACACTGACAGA 60.094 33.333 10.08 0.00 43.07 3.41
5368 11591 8.625651 TCGAATCAAAAGTAGAATGTTTTGGAA 58.374 29.630 7.49 0.00 41.82 3.53
5421 11644 1.450312 AACACCTAGCTGCGCATCC 60.450 57.895 12.24 5.12 0.00 3.51
5427 11650 3.564225 ACAAAACTACAACACCTAGCTGC 59.436 43.478 0.00 0.00 0.00 5.25
5460 14345 9.048922 CAGCGTCTAAGTACGTAACATATAATC 57.951 37.037 0.00 0.00 44.64 1.75
5465 14350 5.503031 GCTCAGCGTCTAAGTACGTAACATA 60.503 44.000 0.00 0.00 44.64 2.29
5470 14355 1.667724 GGCTCAGCGTCTAAGTACGTA 59.332 52.381 0.00 0.00 44.64 3.57
5471 14356 0.450983 GGCTCAGCGTCTAAGTACGT 59.549 55.000 0.00 0.00 44.64 3.57
5472 14357 0.733729 AGGCTCAGCGTCTAAGTACG 59.266 55.000 0.00 0.00 45.58 3.67
5473 14358 2.944349 AGTAGGCTCAGCGTCTAAGTAC 59.056 50.000 0.00 0.00 0.00 2.73
5481 14366 0.609406 TGTCTCAGTAGGCTCAGCGT 60.609 55.000 0.00 0.00 0.00 5.07
5506 14391 2.304470 TCCAATCGTGTCAATCCAAGGA 59.696 45.455 0.00 0.00 0.00 3.36
5549 14434 3.243201 GGTGGCAGTACGTACCTATACAC 60.243 52.174 21.80 20.41 0.00 2.90
5551 14436 3.217626 AGGTGGCAGTACGTACCTATAC 58.782 50.000 21.80 15.20 41.54 1.47
5555 14525 0.893447 GAAGGTGGCAGTACGTACCT 59.107 55.000 21.80 10.88 45.07 3.08
5570 14540 5.011023 AGTTTTGGACTGCCATTTTAGAAGG 59.989 40.000 0.00 0.00 45.46 3.46
5580 14550 3.482436 ACGAATAAGTTTTGGACTGCCA 58.518 40.909 0.00 0.00 44.17 4.92
5593 14563 7.538575 AGTTTGGAATCCAATGAACGAATAAG 58.461 34.615 16.30 0.00 43.55 1.73
5776 14844 0.882927 CTTCGACTTGGAAACGCCCA 60.883 55.000 0.00 0.00 34.97 5.36
5777 14845 0.883370 ACTTCGACTTGGAAACGCCC 60.883 55.000 0.00 0.00 34.97 6.13
5778 14846 0.511653 GACTTCGACTTGGAAACGCC 59.488 55.000 0.00 0.00 37.10 5.68
5779 14847 0.511653 GGACTTCGACTTGGAAACGC 59.488 55.000 0.00 0.00 0.00 4.84
5780 14848 1.792949 CTGGACTTCGACTTGGAAACG 59.207 52.381 0.00 0.00 0.00 3.60
5781 14849 2.835027 ACTGGACTTCGACTTGGAAAC 58.165 47.619 0.00 0.00 0.00 2.78
5782 14850 3.553828 AACTGGACTTCGACTTGGAAA 57.446 42.857 0.00 0.00 0.00 3.13
5784 14852 3.118555 TGAAAACTGGACTTCGACTTGGA 60.119 43.478 0.00 0.00 0.00 3.53
5787 14855 4.138487 AGTGAAAACTGGACTTCGACTT 57.862 40.909 0.00 0.00 0.00 3.01
5791 14859 4.095782 TGGAAAAGTGAAAACTGGACTTCG 59.904 41.667 0.00 0.00 0.00 3.79
5802 14870 6.516527 CGAAAAGGGATGATGGAAAAGTGAAA 60.517 38.462 0.00 0.00 0.00 2.69
5811 14881 4.568072 TCTTTCGAAAAGGGATGATGGA 57.432 40.909 12.41 0.00 0.00 3.41
5827 14897 8.406297 GTGGGGATTTATCACATAGTTTCTTTC 58.594 37.037 0.00 0.00 0.00 2.62
5845 14915 0.982852 TCTCGAGGCATGTGGGGATT 60.983 55.000 13.56 0.00 0.00 3.01
5847 14917 1.383109 ATCTCGAGGCATGTGGGGA 60.383 57.895 13.56 0.00 0.00 4.81
5848 14918 1.070445 GATCTCGAGGCATGTGGGG 59.930 63.158 13.56 0.00 0.00 4.96
5897 15011 6.569179 TCCCTTCACTTTGTAAACATAAGC 57.431 37.500 0.00 0.00 0.00 3.09
5962 15076 4.484236 GCATGATCGTGGTTTTCATTTCA 58.516 39.130 16.59 0.00 0.00 2.69
5964 15078 3.511146 AGGCATGATCGTGGTTTTCATTT 59.489 39.130 16.59 0.00 0.00 2.32
5965 15079 3.091545 AGGCATGATCGTGGTTTTCATT 58.908 40.909 16.59 0.00 0.00 2.57
5966 15080 2.684881 GAGGCATGATCGTGGTTTTCAT 59.315 45.455 16.59 0.00 0.00 2.57
5967 15081 2.083774 GAGGCATGATCGTGGTTTTCA 58.916 47.619 16.59 0.00 0.00 2.69
5968 15082 1.401905 GGAGGCATGATCGTGGTTTTC 59.598 52.381 16.59 0.00 0.00 2.29
5976 15090 3.007290 TCTTCCTATTGGAGGCATGATCG 59.993 47.826 0.00 0.00 46.25 3.69
5979 15093 3.007290 CGATCTTCCTATTGGAGGCATGA 59.993 47.826 0.00 0.00 46.25 3.07
5990 15104 3.639094 CACCACTTCCTCGATCTTCCTAT 59.361 47.826 0.00 0.00 0.00 2.57
6032 15146 0.540830 CCCGCTAGCCACTAGGATCT 60.541 60.000 9.66 0.00 34.88 2.75
6041 15155 0.960364 CTTTCTTTGCCCGCTAGCCA 60.960 55.000 9.66 0.00 0.00 4.75
6046 15161 2.283173 CCCCTTTCTTTGCCCGCT 60.283 61.111 0.00 0.00 0.00 5.52
6069 15184 6.629649 CGCAGTTGTCATTTTTAAGTAAACGA 59.370 34.615 0.00 0.00 0.00 3.85
6079 15194 2.543653 GGAGCACGCAGTTGTCATTTTT 60.544 45.455 0.00 0.00 41.61 1.94
6109 15224 2.727544 TTGCTTTCGTGCAAGGCC 59.272 55.556 0.00 0.00 46.43 5.19
6118 15233 5.526010 ACTTAATCGTAGGTTTGCTTTCG 57.474 39.130 0.00 0.00 0.00 3.46
6154 15269 1.217689 CCCCTCATTAGGCCCATCAAA 59.782 52.381 0.00 0.00 42.14 2.69
6155 15270 0.852842 CCCCTCATTAGGCCCATCAA 59.147 55.000 0.00 0.00 42.14 2.57
6181 15296 5.977489 AAAGTTGGTAAGAACTAATGGGC 57.023 39.130 0.00 0.00 35.01 5.36
6182 15297 7.120726 CACCTAAAGTTGGTAAGAACTAATGGG 59.879 40.741 0.00 0.00 35.01 4.00
6184 15299 8.504005 CACACCTAAAGTTGGTAAGAACTAATG 58.496 37.037 0.00 0.00 35.01 1.90
6185 15300 8.215736 ACACACCTAAAGTTGGTAAGAACTAAT 58.784 33.333 0.00 0.00 35.01 1.73
6186 15301 7.567458 ACACACCTAAAGTTGGTAAGAACTAA 58.433 34.615 0.00 0.00 35.01 2.24
6187 15302 7.128234 ACACACCTAAAGTTGGTAAGAACTA 57.872 36.000 0.00 0.00 35.01 2.24
6192 15307 7.159372 AGATGTACACACCTAAAGTTGGTAAG 58.841 38.462 0.00 0.00 35.80 2.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.