Multiple sequence alignment - TraesCS4A01G166300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G166300 chr4A 100.000 1824 0 0 633 2456 400852168 400850345 0.000000e+00 3369
1 TraesCS4A01G166300 chr4A 92.384 906 65 1 969 1874 400914796 400913895 0.000000e+00 1288
2 TraesCS4A01G166300 chr4A 92.316 898 64 1 971 1868 400846048 400845156 0.000000e+00 1271
3 TraesCS4A01G166300 chr4A 96.021 578 22 1 1880 2456 346715595 346715018 0.000000e+00 939
4 TraesCS4A01G166300 chr4A 95.855 579 22 1 1880 2456 186217389 186217967 0.000000e+00 935
5 TraesCS4A01G166300 chr4A 90.328 548 34 3 1346 1874 332356763 332356216 0.000000e+00 701
6 TraesCS4A01G166300 chr4A 89.225 529 46 4 1346 1874 332364544 332364027 0.000000e+00 651
7 TraesCS4A01G166300 chr4A 92.254 426 32 1 971 1395 386413089 386412664 9.720000e-169 603
8 TraesCS4A01G166300 chr4A 91.607 417 33 2 980 1395 386405057 386404642 2.120000e-160 575
9 TraesCS4A01G166300 chr4A 93.548 341 22 0 633 973 400869344 400869004 2.180000e-140 508
10 TraesCS4A01G166300 chr4A 100.000 264 0 0 1 264 400852800 400852537 2.840000e-134 488
11 TraesCS4A01G166300 chr4A 92.727 330 20 3 642 970 217718611 217718285 7.950000e-130 473
12 TraesCS4A01G166300 chr4A 94.318 264 15 0 1 264 451340915 451340652 2.940000e-109 405
13 TraesCS4A01G166300 chr4A 92.279 272 21 0 1346 1617 485501539 485501268 1.070000e-103 387
14 TraesCS4A01G166300 chr4A 92.045 264 19 1 1 264 451328636 451328375 1.070000e-98 370
15 TraesCS4A01G166300 chr4A 91.667 264 22 0 1 264 451262186 451261923 1.390000e-97 366
16 TraesCS4A01G166300 chr4A 95.755 212 9 0 1 212 400884529 400884318 2.340000e-90 342
17 TraesCS4A01G166300 chr4A 84.932 219 29 4 1653 1871 126664753 126664539 4.110000e-53 219
18 TraesCS4A01G166300 chr1A 96.028 579 21 1 1880 2456 267197978 267197400 0.000000e+00 941
19 TraesCS4A01G166300 chr1A 95.841 577 24 0 1880 2456 415824318 415823742 0.000000e+00 933
20 TraesCS4A01G166300 chr1A 91.150 339 26 1 633 971 364362730 364362396 8.000000e-125 457
21 TraesCS4A01G166300 chr1A 84.018 219 29 5 1654 1871 121189464 121189251 3.200000e-49 206
22 TraesCS4A01G166300 chr1A 82.427 239 33 6 1636 1872 42703126 42703357 1.490000e-47 200
23 TraesCS4A01G166300 chr7A 96.021 578 21 1 1880 2455 517471270 517470693 0.000000e+00 939
24 TraesCS4A01G166300 chr7A 95.869 581 20 4 1880 2456 492327935 492327355 0.000000e+00 937
25 TraesCS4A01G166300 chr7A 91.818 330 24 1 642 971 541860278 541859952 8.000000e-125 457
26 TraesCS4A01G166300 chr7A 87.243 243 24 6 25 264 254694956 254695194 1.120000e-68 270
27 TraesCS4A01G166300 chr7A 86.321 212 19 8 1662 1868 195856056 195856262 3.180000e-54 222
28 TraesCS4A01G166300 chr7A 89.655 116 12 0 1430 1545 75983746 75983631 5.470000e-32 148
29 TraesCS4A01G166300 chr6A 96.021 578 21 2 1880 2456 214467302 214467878 0.000000e+00 939
30 TraesCS4A01G166300 chr6A 95.690 580 25 0 1877 2456 386789688 386790267 0.000000e+00 933
31 TraesCS4A01G166300 chr6A 92.254 426 31 2 971 1395 273121584 273122008 9.720000e-169 603
32 TraesCS4A01G166300 chr6A 84.630 540 67 10 1346 1871 286434093 286433556 7.780000e-145 523
33 TraesCS4A01G166300 chr6A 92.035 339 22 2 633 971 317330073 317329740 2.860000e-129 472
34 TraesCS4A01G166300 chr6A 92.097 329 23 1 642 970 431686926 431686601 6.190000e-126 460
35 TraesCS4A01G166300 chr6A 86.818 220 19 8 1661 1871 560991330 560991548 1.140000e-58 237
36 TraesCS4A01G166300 chr3A 95.855 579 22 1 1880 2456 283736722 283737300 0.000000e+00 935
37 TraesCS4A01G166300 chr3A 91.204 432 33 5 969 1395 495426519 495426950 1.270000e-162 582
38 TraesCS4A01G166300 chr3A 91.716 338 24 1 633 970 509060151 509060484 1.330000e-127 466
39 TraesCS4A01G166300 chr3A 91.420 338 25 1 633 970 192445845 192446178 6.190000e-126 460
40 TraesCS4A01G166300 chrUn 93.473 429 26 2 969 1395 73010473 73010045 9.580000e-179 636
41 TraesCS4A01G166300 chrUn 93.473 429 26 2 969 1395 319768845 319769273 9.580000e-179 636
42 TraesCS4A01G166300 chr5A 90.610 426 39 1 971 1395 239996130 239996555 4.580000e-157 564
43 TraesCS4A01G166300 chr5A 91.445 339 24 3 633 970 593558101 593558435 6.190000e-126 460
44 TraesCS4A01G166300 chr5A 85.577 416 43 8 1346 1744 182860770 182860355 1.050000e-113 420
45 TraesCS4A01G166300 chr5A 89.300 243 26 0 1375 1617 182852412 182852170 3.070000e-79 305
46 TraesCS4A01G166300 chr5A 89.655 116 12 0 1430 1545 286133325 286133440 5.470000e-32 148
47 TraesCS4A01G166300 chr2A 92.424 264 20 0 1 264 509532298 509532561 6.410000e-101 377
48 TraesCS4A01G166300 chr2A 87.448 239 26 4 26 262 202168054 202168290 3.110000e-69 272
49 TraesCS4A01G166300 chr2A 87.243 243 26 5 25 264 480363177 480363417 3.110000e-69 272
50 TraesCS4A01G166300 chr2A 85.338 266 34 5 1 264 248669612 248669350 1.120000e-68 270


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G166300 chr4A 400850345 400852800 2455 True 1928.5 3369 100.000 1 2456 2 chr4A.!!$R16 2455
1 TraesCS4A01G166300 chr4A 400913895 400914796 901 True 1288.0 1288 92.384 969 1874 1 chr4A.!!$R11 905
2 TraesCS4A01G166300 chr4A 400845156 400846048 892 True 1271.0 1271 92.316 971 1868 1 chr4A.!!$R8 897
3 TraesCS4A01G166300 chr4A 346715018 346715595 577 True 939.0 939 96.021 1880 2456 1 chr4A.!!$R5 576
4 TraesCS4A01G166300 chr4A 186217389 186217967 578 False 935.0 935 95.855 1880 2456 1 chr4A.!!$F1 576
5 TraesCS4A01G166300 chr4A 332356216 332356763 547 True 701.0 701 90.328 1346 1874 1 chr4A.!!$R3 528
6 TraesCS4A01G166300 chr4A 332364027 332364544 517 True 651.0 651 89.225 1346 1874 1 chr4A.!!$R4 528
7 TraesCS4A01G166300 chr1A 267197400 267197978 578 True 941.0 941 96.028 1880 2456 1 chr1A.!!$R2 576
8 TraesCS4A01G166300 chr1A 415823742 415824318 576 True 933.0 933 95.841 1880 2456 1 chr1A.!!$R4 576
9 TraesCS4A01G166300 chr7A 517470693 517471270 577 True 939.0 939 96.021 1880 2455 1 chr7A.!!$R3 575
10 TraesCS4A01G166300 chr7A 492327355 492327935 580 True 937.0 937 95.869 1880 2456 1 chr7A.!!$R2 576
11 TraesCS4A01G166300 chr6A 214467302 214467878 576 False 939.0 939 96.021 1880 2456 1 chr6A.!!$F1 576
12 TraesCS4A01G166300 chr6A 386789688 386790267 579 False 933.0 933 95.690 1877 2456 1 chr6A.!!$F3 579
13 TraesCS4A01G166300 chr6A 286433556 286434093 537 True 523.0 523 84.630 1346 1871 1 chr6A.!!$R1 525
14 TraesCS4A01G166300 chr3A 283736722 283737300 578 False 935.0 935 95.855 1880 2456 1 chr3A.!!$F2 576

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
813 814 0.036388 GGCTCAGAATGGACAACGGA 60.036 55.0 0.0 0.0 36.16 4.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1875 1907 0.321919 CCGCATAGTAGGCATGGCAT 60.322 55.0 22.64 9.36 0.0 4.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.335711 GGTTGCTGCCTAGGGGAT 58.664 61.111 11.72 0.00 33.58 3.85
18 19 1.615262 GGTTGCTGCCTAGGGGATT 59.385 57.895 11.72 0.00 33.58 3.01
19 20 0.753111 GGTTGCTGCCTAGGGGATTG 60.753 60.000 11.72 0.00 33.58 2.67
20 21 0.753111 GTTGCTGCCTAGGGGATTGG 60.753 60.000 11.72 0.00 33.58 3.16
21 22 1.214305 TTGCTGCCTAGGGGATTGGT 61.214 55.000 11.72 0.00 33.58 3.67
22 23 1.149401 GCTGCCTAGGGGATTGGTC 59.851 63.158 11.72 0.00 33.58 4.02
23 24 1.348775 GCTGCCTAGGGGATTGGTCT 61.349 60.000 11.72 0.00 33.58 3.85
24 25 2.040144 GCTGCCTAGGGGATTGGTCTA 61.040 57.143 11.72 0.00 33.58 2.59
25 26 2.625639 CTGCCTAGGGGATTGGTCTAT 58.374 52.381 11.72 0.00 33.58 1.98
26 27 3.791320 CTGCCTAGGGGATTGGTCTATA 58.209 50.000 11.72 0.00 33.58 1.31
27 28 4.366267 CTGCCTAGGGGATTGGTCTATAT 58.634 47.826 11.72 0.00 33.58 0.86
28 29 5.529289 CTGCCTAGGGGATTGGTCTATATA 58.471 45.833 11.72 0.00 33.58 0.86
29 30 6.118042 TGCCTAGGGGATTGGTCTATATAT 57.882 41.667 11.72 0.00 33.58 0.86
30 31 7.246960 TGCCTAGGGGATTGGTCTATATATA 57.753 40.000 11.72 0.00 33.58 0.86
31 32 7.847744 TGCCTAGGGGATTGGTCTATATATAT 58.152 38.462 11.72 0.00 33.58 0.86
32 33 8.977315 TGCCTAGGGGATTGGTCTATATATATA 58.023 37.037 11.72 2.49 33.58 0.86
33 34 9.482175 GCCTAGGGGATTGGTCTATATATATAG 57.518 40.741 19.79 19.79 34.84 1.31
34 35 9.482175 CCTAGGGGATTGGTCTATATATATAGC 57.518 40.741 20.69 16.04 34.18 2.97
37 38 9.920230 AGGGGATTGGTCTATATATATAGCATT 57.080 33.333 20.69 12.16 36.47 3.56
38 39 9.950496 GGGGATTGGTCTATATATATAGCATTG 57.050 37.037 20.69 3.01 36.47 2.82
39 40 9.950496 GGGATTGGTCTATATATATAGCATTGG 57.050 37.037 20.69 2.40 36.47 3.16
52 53 7.781324 ATATAGCATTGGATTTTGGTTAGGG 57.219 36.000 0.00 0.00 0.00 3.53
53 54 3.106827 AGCATTGGATTTTGGTTAGGGG 58.893 45.455 0.00 0.00 0.00 4.79
54 55 2.419990 GCATTGGATTTTGGTTAGGGGC 60.420 50.000 0.00 0.00 0.00 5.80
55 56 3.106827 CATTGGATTTTGGTTAGGGGCT 58.893 45.455 0.00 0.00 0.00 5.19
56 57 4.285863 CATTGGATTTTGGTTAGGGGCTA 58.714 43.478 0.00 0.00 0.00 3.93
57 58 4.618378 TTGGATTTTGGTTAGGGGCTAT 57.382 40.909 0.00 0.00 0.00 2.97
58 59 4.618378 TGGATTTTGGTTAGGGGCTATT 57.382 40.909 0.00 0.00 0.00 1.73
59 60 4.542697 TGGATTTTGGTTAGGGGCTATTC 58.457 43.478 0.00 0.00 0.00 1.75
60 61 3.568430 GGATTTTGGTTAGGGGCTATTCG 59.432 47.826 0.00 0.00 0.00 3.34
61 62 2.721425 TTTGGTTAGGGGCTATTCGG 57.279 50.000 0.00 0.00 0.00 4.30
62 63 1.587066 TTGGTTAGGGGCTATTCGGT 58.413 50.000 0.00 0.00 0.00 4.69
63 64 1.125633 TGGTTAGGGGCTATTCGGTC 58.874 55.000 0.00 0.00 0.00 4.79
64 65 0.395686 GGTTAGGGGCTATTCGGTCC 59.604 60.000 0.00 0.00 0.00 4.46
65 66 1.125633 GTTAGGGGCTATTCGGTCCA 58.874 55.000 0.00 0.00 31.57 4.02
66 67 1.697982 GTTAGGGGCTATTCGGTCCAT 59.302 52.381 0.00 0.00 31.57 3.41
67 68 1.640917 TAGGGGCTATTCGGTCCATC 58.359 55.000 0.00 0.00 31.57 3.51
68 69 1.128188 AGGGGCTATTCGGTCCATCC 61.128 60.000 0.00 0.00 31.57 3.51
98 99 3.146618 CGGACGATCCCGGATAATTAG 57.853 52.381 0.73 0.00 45.43 1.73
99 100 2.159282 CGGACGATCCCGGATAATTAGG 60.159 54.545 0.73 0.00 45.43 2.69
100 101 2.830321 GGACGATCCCGGATAATTAGGT 59.170 50.000 0.73 0.00 40.78 3.08
101 102 3.260128 GGACGATCCCGGATAATTAGGTT 59.740 47.826 0.73 0.00 40.78 3.50
102 103 4.463891 GGACGATCCCGGATAATTAGGTTA 59.536 45.833 0.73 0.00 40.78 2.85
103 104 5.393896 GGACGATCCCGGATAATTAGGTTAG 60.394 48.000 0.73 0.00 40.78 2.34
104 105 4.465305 ACGATCCCGGATAATTAGGTTAGG 59.535 45.833 0.73 0.00 40.78 2.69
105 106 4.142004 CGATCCCGGATAATTAGGTTAGGG 60.142 50.000 0.73 7.55 38.95 3.53
106 107 3.523792 TCCCGGATAATTAGGTTAGGGG 58.476 50.000 0.73 7.19 38.19 4.79
107 108 3.144509 TCCCGGATAATTAGGTTAGGGGA 59.855 47.826 0.73 8.86 37.65 4.81
108 109 3.262660 CCCGGATAATTAGGTTAGGGGAC 59.737 52.174 0.73 0.00 35.09 4.46
124 125 3.306917 GGGACCCAATTAACAAAACGG 57.693 47.619 5.33 0.00 0.00 4.44
125 126 2.892215 GGGACCCAATTAACAAAACGGA 59.108 45.455 5.33 0.00 0.00 4.69
126 127 3.057104 GGGACCCAATTAACAAAACGGAG 60.057 47.826 5.33 0.00 0.00 4.63
127 128 3.822167 GGACCCAATTAACAAAACGGAGA 59.178 43.478 0.00 0.00 0.00 3.71
128 129 4.320714 GGACCCAATTAACAAAACGGAGAC 60.321 45.833 0.00 0.00 0.00 3.36
146 147 6.359480 GGAGACGTTTTATAGATGTTTGGG 57.641 41.667 0.00 0.00 0.00 4.12
147 148 5.296035 GGAGACGTTTTATAGATGTTTGGGG 59.704 44.000 0.00 0.00 0.00 4.96
148 149 6.057321 AGACGTTTTATAGATGTTTGGGGA 57.943 37.500 0.00 0.00 0.00 4.81
149 150 6.659824 AGACGTTTTATAGATGTTTGGGGAT 58.340 36.000 0.00 0.00 0.00 3.85
150 151 6.542370 AGACGTTTTATAGATGTTTGGGGATG 59.458 38.462 0.00 0.00 0.00 3.51
151 152 6.419791 ACGTTTTATAGATGTTTGGGGATGA 58.580 36.000 0.00 0.00 0.00 2.92
152 153 7.060421 ACGTTTTATAGATGTTTGGGGATGAT 58.940 34.615 0.00 0.00 0.00 2.45
153 154 7.228706 ACGTTTTATAGATGTTTGGGGATGATC 59.771 37.037 0.00 0.00 0.00 2.92
154 155 7.308589 CGTTTTATAGATGTTTGGGGATGATCC 60.309 40.741 1.94 1.94 35.23 3.36
155 156 2.645838 AGATGTTTGGGGATGATCCG 57.354 50.000 5.22 0.00 37.43 4.18
156 157 1.143684 AGATGTTTGGGGATGATCCGG 59.856 52.381 5.22 0.00 37.43 5.14
157 158 1.142870 GATGTTTGGGGATGATCCGGA 59.857 52.381 6.61 6.61 37.43 5.14
158 159 0.254747 TGTTTGGGGATGATCCGGAC 59.745 55.000 6.12 0.90 37.43 4.79
159 160 0.254747 GTTTGGGGATGATCCGGACA 59.745 55.000 6.12 7.86 37.43 4.02
160 161 0.254747 TTTGGGGATGATCCGGACAC 59.745 55.000 6.12 4.66 37.43 3.67
161 162 0.912006 TTGGGGATGATCCGGACACA 60.912 55.000 6.12 11.37 37.43 3.72
162 163 0.912006 TGGGGATGATCCGGACACAA 60.912 55.000 6.12 0.00 37.43 3.33
163 164 0.474184 GGGGATGATCCGGACACAAT 59.526 55.000 6.12 0.00 37.43 2.71
164 165 1.597742 GGGATGATCCGGACACAATG 58.402 55.000 6.12 0.00 37.43 2.82
165 166 0.947244 GGATGATCCGGACACAATGC 59.053 55.000 6.12 0.00 0.00 3.56
166 167 1.475751 GGATGATCCGGACACAATGCT 60.476 52.381 6.12 0.00 0.00 3.79
167 168 1.600957 GATGATCCGGACACAATGCTG 59.399 52.381 6.12 0.00 0.00 4.41
168 169 0.612744 TGATCCGGACACAATGCTGA 59.387 50.000 6.12 0.00 0.00 4.26
169 170 1.009829 GATCCGGACACAATGCTGAC 58.990 55.000 6.12 0.00 0.00 3.51
170 171 0.740868 ATCCGGACACAATGCTGACG 60.741 55.000 6.12 0.00 0.00 4.35
171 172 1.374125 CCGGACACAATGCTGACGA 60.374 57.895 0.00 0.00 0.00 4.20
172 173 1.626654 CCGGACACAATGCTGACGAC 61.627 60.000 0.00 0.00 0.00 4.34
173 174 0.667487 CGGACACAATGCTGACGACT 60.667 55.000 0.00 0.00 0.00 4.18
174 175 0.792640 GGACACAATGCTGACGACTG 59.207 55.000 0.00 0.00 0.00 3.51
175 176 0.164647 GACACAATGCTGACGACTGC 59.835 55.000 9.60 9.60 40.53 4.40
176 177 1.230635 ACACAATGCTGACGACTGCC 61.231 55.000 13.40 0.00 39.63 4.85
177 178 1.672356 ACAATGCTGACGACTGCCC 60.672 57.895 13.40 0.00 39.63 5.36
178 179 2.434884 AATGCTGACGACTGCCCG 60.435 61.111 13.40 0.00 39.63 6.13
179 180 3.958147 AATGCTGACGACTGCCCGG 62.958 63.158 13.40 0.00 39.63 5.73
182 183 4.436998 CTGACGACTGCCCGGGTC 62.437 72.222 24.63 15.35 0.00 4.46
197 198 3.316760 GTCGGGTCCGGGGAAGTT 61.317 66.667 9.68 0.00 40.25 2.66
198 199 2.527374 TCGGGTCCGGGGAAGTTT 60.527 61.111 9.68 0.00 40.25 2.66
199 200 2.046604 CGGGTCCGGGGAAGTTTC 60.047 66.667 0.00 0.00 35.56 2.78
200 201 2.886134 CGGGTCCGGGGAAGTTTCA 61.886 63.158 0.00 0.00 35.56 2.69
201 202 1.002502 GGGTCCGGGGAAGTTTCAG 60.003 63.158 0.00 0.00 0.00 3.02
202 203 1.486145 GGGTCCGGGGAAGTTTCAGA 61.486 60.000 0.00 0.00 0.00 3.27
203 204 0.321387 GGTCCGGGGAAGTTTCAGAC 60.321 60.000 0.00 0.00 0.00 3.51
204 205 0.669625 GTCCGGGGAAGTTTCAGACG 60.670 60.000 0.00 0.00 0.00 4.18
205 206 2.033194 CCGGGGAAGTTTCAGACGC 61.033 63.158 0.00 0.00 0.00 5.19
206 207 2.380410 CGGGGAAGTTTCAGACGCG 61.380 63.158 3.53 3.53 0.00 6.01
207 208 2.677979 GGGGAAGTTTCAGACGCGC 61.678 63.158 5.73 0.00 0.00 6.86
208 209 1.959226 GGGAAGTTTCAGACGCGCA 60.959 57.895 5.73 0.00 0.00 6.09
209 210 1.204312 GGAAGTTTCAGACGCGCAC 59.796 57.895 5.73 0.00 0.00 5.34
223 224 4.309950 GCACGTGAGGGGTCGGTT 62.310 66.667 22.23 0.00 32.68 4.44
224 225 2.357034 CACGTGAGGGGTCGGTTG 60.357 66.667 10.90 0.00 0.00 3.77
225 226 3.622826 ACGTGAGGGGTCGGTTGG 61.623 66.667 0.00 0.00 0.00 3.77
226 227 3.307906 CGTGAGGGGTCGGTTGGA 61.308 66.667 0.00 0.00 0.00 3.53
227 228 2.874664 CGTGAGGGGTCGGTTGGAA 61.875 63.158 0.00 0.00 0.00 3.53
228 229 1.302271 GTGAGGGGTCGGTTGGAAC 60.302 63.158 0.00 0.00 0.00 3.62
229 230 1.460689 TGAGGGGTCGGTTGGAACT 60.461 57.895 0.00 0.00 31.06 3.01
230 231 1.057851 TGAGGGGTCGGTTGGAACTT 61.058 55.000 0.00 0.00 31.06 2.66
231 232 0.605589 GAGGGGTCGGTTGGAACTTG 60.606 60.000 0.00 0.00 31.06 3.16
232 233 1.149854 GGGGTCGGTTGGAACTTGT 59.850 57.895 0.00 0.00 31.06 3.16
233 234 1.170290 GGGGTCGGTTGGAACTTGTG 61.170 60.000 0.00 0.00 31.06 3.33
234 235 1.170290 GGGTCGGTTGGAACTTGTGG 61.170 60.000 0.00 0.00 31.06 4.17
235 236 1.170290 GGTCGGTTGGAACTTGTGGG 61.170 60.000 0.00 0.00 0.00 4.61
236 237 1.527380 TCGGTTGGAACTTGTGGGC 60.527 57.895 0.00 0.00 0.00 5.36
237 238 1.528309 CGGTTGGAACTTGTGGGCT 60.528 57.895 0.00 0.00 0.00 5.19
238 239 1.795170 CGGTTGGAACTTGTGGGCTG 61.795 60.000 0.00 0.00 0.00 4.85
239 240 0.755327 GGTTGGAACTTGTGGGCTGT 60.755 55.000 0.00 0.00 0.00 4.40
240 241 0.385390 GTTGGAACTTGTGGGCTGTG 59.615 55.000 0.00 0.00 0.00 3.66
241 242 1.391157 TTGGAACTTGTGGGCTGTGC 61.391 55.000 0.00 0.00 0.00 4.57
242 243 1.827789 GGAACTTGTGGGCTGTGCA 60.828 57.895 0.00 0.00 0.00 4.57
243 244 1.656441 GAACTTGTGGGCTGTGCAG 59.344 57.895 0.00 0.00 0.00 4.41
244 245 0.819259 GAACTTGTGGGCTGTGCAGA 60.819 55.000 3.02 0.00 0.00 4.26
245 246 0.395586 AACTTGTGGGCTGTGCAGAA 60.396 50.000 3.02 0.00 0.00 3.02
246 247 0.820891 ACTTGTGGGCTGTGCAGAAG 60.821 55.000 3.02 0.00 0.00 2.85
247 248 1.521450 CTTGTGGGCTGTGCAGAAGG 61.521 60.000 3.02 0.00 0.00 3.46
248 249 2.674380 GTGGGCTGTGCAGAAGGG 60.674 66.667 3.02 0.00 0.00 3.95
249 250 4.666253 TGGGCTGTGCAGAAGGGC 62.666 66.667 3.02 0.00 0.00 5.19
250 251 4.357279 GGGCTGTGCAGAAGGGCT 62.357 66.667 3.02 0.00 34.04 5.19
251 252 2.749441 GGCTGTGCAGAAGGGCTC 60.749 66.667 3.02 0.00 34.04 4.70
252 253 3.123620 GCTGTGCAGAAGGGCTCG 61.124 66.667 3.02 0.00 34.04 5.03
253 254 2.659016 CTGTGCAGAAGGGCTCGA 59.341 61.111 0.00 0.00 34.04 4.04
254 255 1.447489 CTGTGCAGAAGGGCTCGAG 60.447 63.158 8.45 8.45 34.04 4.04
255 256 2.817396 GTGCAGAAGGGCTCGAGC 60.817 66.667 29.38 29.38 41.14 5.03
256 257 2.999648 TGCAGAAGGGCTCGAGCT 61.000 61.111 34.46 17.49 41.70 4.09
257 258 2.511145 GCAGAAGGGCTCGAGCTG 60.511 66.667 34.46 25.12 41.70 4.24
258 259 3.011635 GCAGAAGGGCTCGAGCTGA 62.012 63.158 34.46 0.00 41.70 4.26
649 650 3.423179 GTTGGGGCGTCAAACGAA 58.577 55.556 3.28 0.00 46.05 3.85
650 651 1.009335 GTTGGGGCGTCAAACGAAC 60.009 57.895 3.28 0.00 46.05 3.95
651 652 1.153127 TTGGGGCGTCAAACGAACT 60.153 52.632 3.28 0.00 46.05 3.01
652 653 1.161563 TTGGGGCGTCAAACGAACTC 61.162 55.000 3.28 0.00 46.05 3.01
653 654 2.322830 GGGGCGTCAAACGAACTCC 61.323 63.158 3.28 0.00 46.05 3.85
654 655 2.664436 GGGCGTCAAACGAACTCCG 61.664 63.158 3.28 0.00 46.05 4.63
655 656 1.662446 GGCGTCAAACGAACTCCGA 60.662 57.895 3.28 0.00 46.05 4.55
656 657 1.216941 GGCGTCAAACGAACTCCGAA 61.217 55.000 3.28 0.00 46.05 4.30
657 658 0.788391 GCGTCAAACGAACTCCGAAT 59.212 50.000 3.28 0.00 46.05 3.34
658 659 1.461888 GCGTCAAACGAACTCCGAATG 60.462 52.381 3.28 0.00 46.05 2.67
659 660 1.461888 CGTCAAACGAACTCCGAATGC 60.462 52.381 0.00 0.00 46.05 3.56
660 661 0.787787 TCAAACGAACTCCGAATGCG 59.212 50.000 0.00 0.00 41.76 4.73
661 662 0.787787 CAAACGAACTCCGAATGCGA 59.212 50.000 0.00 0.00 41.76 5.10
662 663 1.393539 CAAACGAACTCCGAATGCGAT 59.606 47.619 0.00 0.00 41.76 4.58
663 664 0.999406 AACGAACTCCGAATGCGATG 59.001 50.000 0.00 0.00 41.76 3.84
664 665 0.172578 ACGAACTCCGAATGCGATGA 59.827 50.000 0.00 0.00 41.76 2.92
665 666 1.277326 CGAACTCCGAATGCGATGAA 58.723 50.000 0.00 0.00 41.76 2.57
666 667 1.658596 CGAACTCCGAATGCGATGAAA 59.341 47.619 0.00 0.00 41.76 2.69
667 668 2.285220 CGAACTCCGAATGCGATGAAAT 59.715 45.455 0.00 0.00 41.76 2.17
668 669 3.242413 CGAACTCCGAATGCGATGAAATT 60.242 43.478 0.00 0.00 41.76 1.82
669 670 4.662145 GAACTCCGAATGCGATGAAATTT 58.338 39.130 0.00 0.00 40.82 1.82
670 671 4.019919 ACTCCGAATGCGATGAAATTTG 57.980 40.909 0.00 0.00 40.82 2.32
671 672 3.689161 ACTCCGAATGCGATGAAATTTGA 59.311 39.130 0.00 0.00 40.82 2.69
672 673 4.014847 TCCGAATGCGATGAAATTTGAC 57.985 40.909 0.00 0.00 40.82 3.18
673 674 3.438434 TCCGAATGCGATGAAATTTGACA 59.562 39.130 0.00 0.00 40.82 3.58
674 675 3.787634 CCGAATGCGATGAAATTTGACAG 59.212 43.478 0.00 0.00 40.82 3.51
675 676 3.787634 CGAATGCGATGAAATTTGACAGG 59.212 43.478 0.00 0.00 40.82 4.00
676 677 4.437255 CGAATGCGATGAAATTTGACAGGA 60.437 41.667 0.00 0.00 40.82 3.86
677 678 4.627611 ATGCGATGAAATTTGACAGGAG 57.372 40.909 0.00 0.00 0.00 3.69
678 679 2.749076 TGCGATGAAATTTGACAGGAGG 59.251 45.455 0.00 0.00 0.00 4.30
679 680 2.749621 GCGATGAAATTTGACAGGAGGT 59.250 45.455 0.00 0.00 0.00 3.85
707 708 6.732154 TCTACACTATAATAAGACCACACGC 58.268 40.000 0.00 0.00 0.00 5.34
708 709 4.690122 ACACTATAATAAGACCACACGCC 58.310 43.478 0.00 0.00 0.00 5.68
709 710 4.160814 ACACTATAATAAGACCACACGCCA 59.839 41.667 0.00 0.00 0.00 5.69
710 711 5.113383 CACTATAATAAGACCACACGCCAA 58.887 41.667 0.00 0.00 0.00 4.52
711 712 5.006358 CACTATAATAAGACCACACGCCAAC 59.994 44.000 0.00 0.00 0.00 3.77
712 713 2.561478 AATAAGACCACACGCCAACT 57.439 45.000 0.00 0.00 0.00 3.16
713 714 2.561478 ATAAGACCACACGCCAACTT 57.439 45.000 0.00 0.00 0.00 2.66
714 715 2.335316 TAAGACCACACGCCAACTTT 57.665 45.000 0.00 0.00 0.00 2.66
715 716 1.021968 AAGACCACACGCCAACTTTC 58.978 50.000 0.00 0.00 0.00 2.62
716 717 0.107410 AGACCACACGCCAACTTTCA 60.107 50.000 0.00 0.00 0.00 2.69
717 718 0.736053 GACCACACGCCAACTTTCAA 59.264 50.000 0.00 0.00 0.00 2.69
718 719 0.454196 ACCACACGCCAACTTTCAAC 59.546 50.000 0.00 0.00 0.00 3.18
719 720 0.248866 CCACACGCCAACTTTCAACC 60.249 55.000 0.00 0.00 0.00 3.77
720 721 0.248866 CACACGCCAACTTTCAACCC 60.249 55.000 0.00 0.00 0.00 4.11
721 722 0.681564 ACACGCCAACTTTCAACCCA 60.682 50.000 0.00 0.00 0.00 4.51
722 723 0.673437 CACGCCAACTTTCAACCCAT 59.327 50.000 0.00 0.00 0.00 4.00
723 724 1.068434 CACGCCAACTTTCAACCCATT 59.932 47.619 0.00 0.00 0.00 3.16
724 725 1.339929 ACGCCAACTTTCAACCCATTC 59.660 47.619 0.00 0.00 0.00 2.67
725 726 1.336795 CGCCAACTTTCAACCCATTCC 60.337 52.381 0.00 0.00 0.00 3.01
726 727 1.336795 GCCAACTTTCAACCCATTCCG 60.337 52.381 0.00 0.00 0.00 4.30
727 728 2.235016 CCAACTTTCAACCCATTCCGA 58.765 47.619 0.00 0.00 0.00 4.55
728 729 2.228822 CCAACTTTCAACCCATTCCGAG 59.771 50.000 0.00 0.00 0.00 4.63
729 730 3.146066 CAACTTTCAACCCATTCCGAGA 58.854 45.455 0.00 0.00 0.00 4.04
730 731 3.502123 ACTTTCAACCCATTCCGAGAA 57.498 42.857 0.00 0.00 0.00 2.87
731 732 3.146847 ACTTTCAACCCATTCCGAGAAC 58.853 45.455 0.00 0.00 0.00 3.01
732 733 2.940994 TTCAACCCATTCCGAGAACA 57.059 45.000 0.00 0.00 0.00 3.18
733 734 3.433306 TTCAACCCATTCCGAGAACAT 57.567 42.857 0.00 0.00 0.00 2.71
734 735 3.433306 TCAACCCATTCCGAGAACATT 57.567 42.857 0.00 0.00 0.00 2.71
735 736 3.761897 TCAACCCATTCCGAGAACATTT 58.238 40.909 0.00 0.00 0.00 2.32
736 737 4.148838 TCAACCCATTCCGAGAACATTTT 58.851 39.130 0.00 0.00 0.00 1.82
737 738 4.217550 TCAACCCATTCCGAGAACATTTTC 59.782 41.667 0.00 0.00 0.00 2.29
738 739 4.034285 ACCCATTCCGAGAACATTTTCT 57.966 40.909 0.00 0.00 45.35 2.52
739 740 3.758554 ACCCATTCCGAGAACATTTTCTG 59.241 43.478 0.00 0.00 42.53 3.02
740 741 3.129287 CCCATTCCGAGAACATTTTCTGG 59.871 47.826 0.00 0.00 42.53 3.86
741 742 3.428045 CCATTCCGAGAACATTTTCTGGC 60.428 47.826 0.00 0.00 42.53 4.85
742 743 1.821216 TCCGAGAACATTTTCTGGCC 58.179 50.000 0.00 0.00 42.53 5.36
743 744 1.073125 TCCGAGAACATTTTCTGGCCA 59.927 47.619 4.71 4.71 42.53 5.36
744 745 1.200020 CCGAGAACATTTTCTGGCCAC 59.800 52.381 0.00 0.00 42.53 5.01
745 746 2.154462 CGAGAACATTTTCTGGCCACT 58.846 47.619 0.00 0.00 42.53 4.00
746 747 2.554032 CGAGAACATTTTCTGGCCACTT 59.446 45.455 0.00 0.00 42.53 3.16
747 748 3.751175 CGAGAACATTTTCTGGCCACTTA 59.249 43.478 0.00 0.00 42.53 2.24
748 749 4.396166 CGAGAACATTTTCTGGCCACTTAT 59.604 41.667 0.00 0.00 42.53 1.73
749 750 5.584649 CGAGAACATTTTCTGGCCACTTATA 59.415 40.000 0.00 0.00 42.53 0.98
750 751 6.093495 CGAGAACATTTTCTGGCCACTTATAA 59.907 38.462 0.00 0.00 42.53 0.98
751 752 7.361713 CGAGAACATTTTCTGGCCACTTATAAA 60.362 37.037 0.00 0.00 42.53 1.40
752 753 8.189119 AGAACATTTTCTGGCCACTTATAAAA 57.811 30.769 0.00 4.56 40.82 1.52
753 754 8.815912 AGAACATTTTCTGGCCACTTATAAAAT 58.184 29.630 0.00 6.74 40.82 1.82
772 773 6.747659 AAAATAATATTTCGAACATGCCGC 57.252 33.333 0.00 0.00 0.00 6.53
773 774 2.383298 AATATTTCGAACATGCCGCG 57.617 45.000 0.00 0.00 0.00 6.46
774 775 0.586319 ATATTTCGAACATGCCGCGG 59.414 50.000 24.05 24.05 0.00 6.46
775 776 0.460459 TATTTCGAACATGCCGCGGA 60.460 50.000 33.48 15.19 0.00 5.54
776 777 1.977594 ATTTCGAACATGCCGCGGAC 61.978 55.000 33.48 21.14 0.00 4.79
789 790 4.354212 CGGACGCGTGCAAGTGTG 62.354 66.667 30.05 9.14 34.67 3.82
790 791 3.269347 GGACGCGTGCAAGTGTGT 61.269 61.111 26.60 11.94 34.67 3.72
791 792 2.245532 GACGCGTGCAAGTGTGTC 59.754 61.111 23.42 16.57 38.30 3.67
792 793 2.202878 ACGCGTGCAAGTGTGTCT 60.203 55.556 18.10 0.00 33.08 3.41
793 794 2.246397 CGCGTGCAAGTGTGTCTG 59.754 61.111 4.93 0.00 0.00 3.51
794 795 2.633657 GCGTGCAAGTGTGTCTGG 59.366 61.111 0.59 0.00 0.00 3.86
795 796 2.896801 GCGTGCAAGTGTGTCTGGG 61.897 63.158 0.59 0.00 0.00 4.45
796 797 2.896801 CGTGCAAGTGTGTCTGGGC 61.897 63.158 0.00 0.00 0.00 5.36
797 798 1.526917 GTGCAAGTGTGTCTGGGCT 60.527 57.895 0.00 0.00 0.00 5.19
798 799 1.227943 TGCAAGTGTGTCTGGGCTC 60.228 57.895 0.00 0.00 0.00 4.70
799 800 1.227943 GCAAGTGTGTCTGGGCTCA 60.228 57.895 0.00 0.00 0.00 4.26
800 801 1.233285 GCAAGTGTGTCTGGGCTCAG 61.233 60.000 7.48 7.48 42.21 3.35
801 802 0.394192 CAAGTGTGTCTGGGCTCAGA 59.606 55.000 13.72 13.72 46.81 3.27
808 809 3.087343 TCTGGGCTCAGAATGGACA 57.913 52.632 15.68 0.00 46.08 4.02
809 810 1.361204 TCTGGGCTCAGAATGGACAA 58.639 50.000 15.68 0.00 46.08 3.18
810 811 1.003580 TCTGGGCTCAGAATGGACAAC 59.996 52.381 15.68 0.00 46.08 3.32
811 812 0.321564 TGGGCTCAGAATGGACAACG 60.322 55.000 0.00 0.00 36.16 4.10
812 813 1.026718 GGGCTCAGAATGGACAACGG 61.027 60.000 0.00 0.00 36.16 4.44
813 814 0.036388 GGCTCAGAATGGACAACGGA 60.036 55.000 0.00 0.00 36.16 4.69
814 815 1.079503 GCTCAGAATGGACAACGGAC 58.920 55.000 0.00 0.00 36.16 4.79
815 816 1.350193 CTCAGAATGGACAACGGACG 58.650 55.000 0.00 0.00 36.16 4.79
816 817 0.037697 TCAGAATGGACAACGGACGG 60.038 55.000 0.00 0.00 36.16 4.79
817 818 0.037697 CAGAATGGACAACGGACGGA 60.038 55.000 0.00 0.00 0.00 4.69
818 819 0.682852 AGAATGGACAACGGACGGAA 59.317 50.000 0.00 0.00 0.00 4.30
819 820 0.794473 GAATGGACAACGGACGGAAC 59.206 55.000 0.00 0.00 0.00 3.62
820 821 0.395312 AATGGACAACGGACGGAACT 59.605 50.000 0.00 0.00 0.00 3.01
821 822 0.320421 ATGGACAACGGACGGAACTG 60.320 55.000 0.00 0.00 0.00 3.16
822 823 1.666872 GGACAACGGACGGAACTGG 60.667 63.158 0.00 0.00 0.00 4.00
823 824 1.666872 GACAACGGACGGAACTGGG 60.667 63.158 0.00 0.00 0.00 4.45
824 825 2.358247 CAACGGACGGAACTGGGG 60.358 66.667 0.00 0.00 0.00 4.96
825 826 3.633116 AACGGACGGAACTGGGGG 61.633 66.667 0.00 0.00 0.00 5.40
841 842 2.672908 GGGAAAACCCGGACGGAT 59.327 61.111 13.13 0.00 37.50 4.18
842 843 1.747745 GGGAAAACCCGGACGGATG 60.748 63.158 13.13 0.00 37.50 3.51
843 844 2.404186 GGAAAACCCGGACGGATGC 61.404 63.158 13.13 0.00 37.50 3.91
844 845 1.673009 GAAAACCCGGACGGATGCA 60.673 57.895 13.13 0.00 37.50 3.96
845 846 1.228306 AAAACCCGGACGGATGCAA 60.228 52.632 13.13 0.00 37.50 4.08
846 847 1.241315 AAAACCCGGACGGATGCAAG 61.241 55.000 13.13 0.00 37.50 4.01
847 848 2.406002 AAACCCGGACGGATGCAAGT 62.406 55.000 13.13 0.00 37.50 3.16
848 849 2.046314 CCCGGACGGATGCAAGTT 60.046 61.111 13.13 0.00 37.50 2.66
849 850 1.674322 CCCGGACGGATGCAAGTTT 60.674 57.895 13.13 0.00 37.50 2.66
850 851 1.241315 CCCGGACGGATGCAAGTTTT 61.241 55.000 13.13 0.00 37.50 2.43
851 852 0.109781 CCGGACGGATGCAAGTTTTG 60.110 55.000 4.40 0.00 37.50 2.44
852 853 0.871722 CGGACGGATGCAAGTTTTGA 59.128 50.000 0.00 0.00 0.00 2.69
853 854 1.265635 CGGACGGATGCAAGTTTTGAA 59.734 47.619 0.00 0.00 0.00 2.69
854 855 2.287308 CGGACGGATGCAAGTTTTGAAA 60.287 45.455 0.00 0.00 0.00 2.69
855 856 3.712187 GGACGGATGCAAGTTTTGAAAA 58.288 40.909 0.00 0.00 0.00 2.29
856 857 3.489416 GGACGGATGCAAGTTTTGAAAAC 59.511 43.478 12.62 12.62 0.00 2.43
857 858 4.109050 GACGGATGCAAGTTTTGAAAACA 58.891 39.130 21.34 2.60 0.00 2.83
858 859 4.692228 ACGGATGCAAGTTTTGAAAACAT 58.308 34.783 21.34 8.10 0.00 2.71
859 860 4.507388 ACGGATGCAAGTTTTGAAAACATG 59.493 37.500 21.34 19.83 0.00 3.21
860 861 4.608890 CGGATGCAAGTTTTGAAAACATGC 60.609 41.667 31.90 31.90 42.95 4.06
862 863 4.861389 TGCAAGTTTTGAAAACATGCAG 57.139 36.364 35.21 17.00 45.89 4.41
863 864 4.502016 TGCAAGTTTTGAAAACATGCAGA 58.498 34.783 35.21 21.89 45.89 4.26
864 865 5.117584 TGCAAGTTTTGAAAACATGCAGAT 58.882 33.333 35.21 9.51 45.89 2.90
865 866 5.006844 TGCAAGTTTTGAAAACATGCAGATG 59.993 36.000 35.21 17.92 45.89 2.90
866 867 5.437263 CAAGTTTTGAAAACATGCAGATGC 58.563 37.500 21.34 0.00 42.50 3.91
881 882 4.982999 GCAGATGCAATATGGATGATGAC 58.017 43.478 0.00 0.00 35.72 3.06
882 883 4.457949 GCAGATGCAATATGGATGATGACA 59.542 41.667 0.00 0.00 35.72 3.58
883 884 5.125578 GCAGATGCAATATGGATGATGACAT 59.874 40.000 0.00 0.00 35.72 3.06
884 885 6.555315 CAGATGCAATATGGATGATGACATG 58.445 40.000 0.00 0.00 36.82 3.21
885 886 5.652452 AGATGCAATATGGATGATGACATGG 59.348 40.000 0.00 0.00 36.82 3.66
886 887 3.508402 TGCAATATGGATGATGACATGGC 59.492 43.478 0.00 0.00 36.82 4.40
887 888 3.508402 GCAATATGGATGATGACATGGCA 59.492 43.478 2.18 2.18 36.82 4.92
888 889 4.021807 GCAATATGGATGATGACATGGCAA 60.022 41.667 4.70 0.00 36.82 4.52
889 890 5.709966 CAATATGGATGATGACATGGCAAG 58.290 41.667 4.70 0.00 36.82 4.01
890 891 3.588210 ATGGATGATGACATGGCAAGA 57.412 42.857 4.70 0.00 36.82 3.02
891 892 3.588210 TGGATGATGACATGGCAAGAT 57.412 42.857 4.70 0.00 36.82 2.40
892 893 3.219281 TGGATGATGACATGGCAAGATG 58.781 45.455 4.70 0.00 36.82 2.90
893 894 2.030185 GGATGATGACATGGCAAGATGC 60.030 50.000 4.70 1.61 38.66 3.91
894 895 2.621526 GATGATGACATGGCAAGATGCA 59.378 45.455 4.70 0.00 40.11 3.96
895 896 3.067601 GATGATGACATGGCAAGATGCAA 59.932 43.478 4.70 0.00 40.11 4.08
896 897 5.027394 GATGATGACATGGCAAGATGCAAC 61.027 45.833 4.70 0.00 40.11 4.17
897 898 7.398380 GATGATGACATGGCAAGATGCAACA 62.398 44.000 4.70 0.00 40.11 3.33
909 910 3.440267 GCAACACGCAAGCGAATG 58.560 55.556 22.30 16.05 42.83 2.67
910 911 1.082169 GCAACACGCAAGCGAATGA 60.082 52.632 22.30 0.00 42.83 2.57
911 912 1.330080 GCAACACGCAAGCGAATGAC 61.330 55.000 22.30 3.77 42.83 3.06
912 913 0.041400 CAACACGCAAGCGAATGACA 60.041 50.000 22.30 0.00 42.83 3.58
913 914 0.874390 AACACGCAAGCGAATGACAT 59.126 45.000 22.30 0.00 42.83 3.06
914 915 0.166597 ACACGCAAGCGAATGACATG 59.833 50.000 22.30 9.30 42.83 3.21
915 916 0.521867 CACGCAAGCGAATGACATGG 60.522 55.000 22.30 0.00 42.83 3.66
916 917 1.584483 CGCAAGCGAATGACATGGC 60.584 57.895 9.11 0.00 42.83 4.40
917 918 1.507630 GCAAGCGAATGACATGGCA 59.492 52.632 2.18 2.18 0.00 4.92
918 919 0.109179 GCAAGCGAATGACATGGCAA 60.109 50.000 4.70 0.00 0.00 4.52
919 920 1.621107 CAAGCGAATGACATGGCAAC 58.379 50.000 4.70 1.62 0.00 4.17
920 921 0.168788 AAGCGAATGACATGGCAACG 59.831 50.000 21.68 21.68 42.51 4.10
921 922 1.869132 GCGAATGACATGGCAACGC 60.869 57.895 30.05 30.05 39.12 4.84
936 937 2.202824 CGCCGGCGAATAACTGGA 60.203 61.111 44.86 0.00 42.83 3.86
937 938 1.812093 CGCCGGCGAATAACTGGAA 60.812 57.895 44.86 0.00 42.83 3.53
938 939 1.762222 CGCCGGCGAATAACTGGAAG 61.762 60.000 44.86 9.17 42.83 3.46
939 940 0.461339 GCCGGCGAATAACTGGAAGA 60.461 55.000 12.58 0.00 37.43 2.87
940 941 1.287425 CCGGCGAATAACTGGAAGAC 58.713 55.000 9.30 0.00 37.43 3.01
941 942 1.404986 CCGGCGAATAACTGGAAGACA 60.405 52.381 9.30 0.00 37.43 3.41
942 943 1.659098 CGGCGAATAACTGGAAGACAC 59.341 52.381 0.00 0.00 37.43 3.67
943 944 2.674177 CGGCGAATAACTGGAAGACACT 60.674 50.000 0.00 0.00 37.43 3.55
944 945 3.335579 GGCGAATAACTGGAAGACACTT 58.664 45.455 0.00 0.00 37.43 3.16
945 946 3.125316 GGCGAATAACTGGAAGACACTTG 59.875 47.826 0.00 0.00 37.43 3.16
946 947 3.125316 GCGAATAACTGGAAGACACTTGG 59.875 47.826 0.00 0.00 37.43 3.61
947 948 3.125316 CGAATAACTGGAAGACACTTGGC 59.875 47.826 0.00 0.00 37.43 4.52
948 949 3.788227 ATAACTGGAAGACACTTGGCA 57.212 42.857 0.00 0.00 37.43 4.92
949 950 1.680338 AACTGGAAGACACTTGGCAC 58.320 50.000 0.00 0.00 37.43 5.01
950 951 0.546122 ACTGGAAGACACTTGGCACA 59.454 50.000 0.00 0.00 37.43 4.57
951 952 1.064758 ACTGGAAGACACTTGGCACAA 60.065 47.619 0.00 0.00 40.76 3.33
952 953 1.334869 CTGGAAGACACTTGGCACAAC 59.665 52.381 0.00 0.00 39.97 3.32
953 954 4.194305 CTGGAAGACACTTGGCACAACG 62.194 54.545 0.00 0.00 39.97 4.10
961 962 4.308458 TGGCACAACGGTCTCGGG 62.308 66.667 0.00 0.00 41.39 5.14
966 967 4.675029 CAACGGTCTCGGGGCGTT 62.675 66.667 0.00 0.00 41.39 4.84
967 968 2.990967 AACGGTCTCGGGGCGTTA 60.991 61.111 0.00 0.00 41.39 3.18
976 977 2.353573 GGGGCGTTACACCATGGT 59.646 61.111 13.00 13.00 0.00 3.55
1065 1066 1.123861 TGACCTCAAGCTCCTGTGCT 61.124 55.000 0.00 0.00 46.40 4.40
1071 1072 0.035630 CAAGCTCCTGTGCTAGCCTT 60.036 55.000 13.29 3.19 43.24 4.35
1091 1092 1.662044 CCTTCCTGCACCACTTTGC 59.338 57.895 0.00 0.00 43.31 3.68
1125 1126 2.249535 CCAAGCCATCCTCGCATCG 61.250 63.158 0.00 0.00 0.00 3.84
1161 1162 0.472471 AGGACGCCAAGACCTTTTCA 59.528 50.000 0.00 0.00 42.25 2.69
1169 1170 2.159338 CCAAGACCTTTTCATGGATGCG 60.159 50.000 0.00 0.00 44.71 4.73
1230 1231 0.591170 CTGCGATGACCGGTGTTTTT 59.409 50.000 14.63 0.00 39.04 1.94
1259 1260 4.406456 TGCCAAGTACCATTTTGTCAGAT 58.594 39.130 0.00 0.00 0.00 2.90
1284 1285 0.971386 AACGACTACCACACCGGAAT 59.029 50.000 9.46 0.00 38.63 3.01
1324 1325 1.469940 CGAGTTCCTCTCCGAATGTGG 60.470 57.143 0.00 0.00 39.84 4.17
1328 1329 2.434702 GTTCCTCTCCGAATGTGGGTAT 59.565 50.000 0.00 0.00 0.00 2.73
1369 1370 1.079405 TTGGATGCCCGAACGAGTC 60.079 57.895 0.00 0.00 34.29 3.36
1383 1384 3.278592 GAGTCCGGACCGAAACGCT 62.279 63.158 30.82 9.91 0.00 5.07
1404 1405 5.241949 CGCTAAGTACCACTATCCATCTTCT 59.758 44.000 0.00 0.00 0.00 2.85
1453 1473 3.873361 CGCCAAGTACAATGATGATCAGT 59.127 43.478 0.09 0.00 0.00 3.41
1485 1505 0.944311 TGCGTCAAGTTCCTCTTCGC 60.944 55.000 0.00 0.00 44.26 4.70
1523 1543 0.036388 TGCATTCCTCAAGTCCGACC 60.036 55.000 0.00 0.00 0.00 4.79
1636 1666 3.013921 ACTTTCACCATGTCGTTGTGTT 58.986 40.909 0.00 0.00 0.00 3.32
1659 1689 1.408340 TCTACCGTCACCGTGAACAAA 59.592 47.619 1.88 0.00 0.00 2.83
1713 1743 4.601084 TCTTCCCTCTACGAACTTGATCT 58.399 43.478 0.00 0.00 0.00 2.75
1811 1843 8.959548 TGAGATGCATGTTTAGATGTTGTATTT 58.040 29.630 2.46 0.00 0.00 1.40
1850 1882 1.607178 CCTCCTTGTTGCCATGCCA 60.607 57.895 0.00 0.00 0.00 4.92
1878 1910 3.758931 GGAACCCGGTTGCCATGC 61.759 66.667 7.78 0.00 0.00 4.06
2001 2034 0.846427 AGGAACCCCCTGCTTGATCA 60.846 55.000 0.00 0.00 45.61 2.92
2113 2150 3.695606 GTCGCTCTGGTGAGGCCA 61.696 66.667 5.01 0.00 46.95 5.36
2333 2377 0.892755 ATACCTGAGTTCGCCGACAA 59.107 50.000 0.00 0.00 0.00 3.18
2409 2453 2.493501 GCGGGAGTTCGGGAGTAC 59.506 66.667 0.00 0.00 0.00 2.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.753111 CAATCCCCTAGGCAGCAACC 60.753 60.000 2.05 0.00 0.00 3.77
1 2 0.753111 CCAATCCCCTAGGCAGCAAC 60.753 60.000 2.05 0.00 0.00 4.17
2 3 1.214305 ACCAATCCCCTAGGCAGCAA 61.214 55.000 2.05 0.00 0.00 3.91
3 4 1.619363 ACCAATCCCCTAGGCAGCA 60.619 57.895 2.05 0.00 0.00 4.41
4 5 1.149401 GACCAATCCCCTAGGCAGC 59.851 63.158 2.05 0.00 0.00 5.25
5 6 2.103153 TAGACCAATCCCCTAGGCAG 57.897 55.000 2.05 0.00 0.00 4.85
6 7 2.815357 ATAGACCAATCCCCTAGGCA 57.185 50.000 2.05 0.00 0.00 4.75
7 8 9.482175 CTATATATATAGACCAATCCCCTAGGC 57.518 40.741 20.84 0.00 38.30 3.93
8 9 9.482175 GCTATATATATAGACCAATCCCCTAGG 57.518 40.741 27.09 0.06 38.30 3.02
11 12 9.920230 AATGCTATATATATAGACCAATCCCCT 57.080 33.333 27.09 4.34 38.30 4.79
12 13 9.950496 CAATGCTATATATATAGACCAATCCCC 57.050 37.037 27.09 10.97 38.30 4.81
13 14 9.950496 CCAATGCTATATATATAGACCAATCCC 57.050 37.037 27.09 11.53 38.30 3.85
26 27 9.479549 CCCTAACCAAAATCCAATGCTATATAT 57.520 33.333 0.00 0.00 0.00 0.86
27 28 7.893302 CCCCTAACCAAAATCCAATGCTATATA 59.107 37.037 0.00 0.00 0.00 0.86
28 29 6.725834 CCCCTAACCAAAATCCAATGCTATAT 59.274 38.462 0.00 0.00 0.00 0.86
29 30 6.074648 CCCCTAACCAAAATCCAATGCTATA 58.925 40.000 0.00 0.00 0.00 1.31
30 31 4.901250 CCCCTAACCAAAATCCAATGCTAT 59.099 41.667 0.00 0.00 0.00 2.97
31 32 4.285863 CCCCTAACCAAAATCCAATGCTA 58.714 43.478 0.00 0.00 0.00 3.49
32 33 3.106827 CCCCTAACCAAAATCCAATGCT 58.893 45.455 0.00 0.00 0.00 3.79
33 34 2.419990 GCCCCTAACCAAAATCCAATGC 60.420 50.000 0.00 0.00 0.00 3.56
34 35 3.106827 AGCCCCTAACCAAAATCCAATG 58.893 45.455 0.00 0.00 0.00 2.82
35 36 3.490060 AGCCCCTAACCAAAATCCAAT 57.510 42.857 0.00 0.00 0.00 3.16
36 37 4.618378 ATAGCCCCTAACCAAAATCCAA 57.382 40.909 0.00 0.00 0.00 3.53
37 38 4.542697 GAATAGCCCCTAACCAAAATCCA 58.457 43.478 0.00 0.00 0.00 3.41
38 39 3.568430 CGAATAGCCCCTAACCAAAATCC 59.432 47.826 0.00 0.00 0.00 3.01
39 40 3.568430 CCGAATAGCCCCTAACCAAAATC 59.432 47.826 0.00 0.00 0.00 2.17
40 41 3.053170 ACCGAATAGCCCCTAACCAAAAT 60.053 43.478 0.00 0.00 0.00 1.82
41 42 2.309458 ACCGAATAGCCCCTAACCAAAA 59.691 45.455 0.00 0.00 0.00 2.44
42 43 1.917568 ACCGAATAGCCCCTAACCAAA 59.082 47.619 0.00 0.00 0.00 3.28
43 44 1.487558 GACCGAATAGCCCCTAACCAA 59.512 52.381 0.00 0.00 0.00 3.67
44 45 1.125633 GACCGAATAGCCCCTAACCA 58.874 55.000 0.00 0.00 0.00 3.67
45 46 0.395686 GGACCGAATAGCCCCTAACC 59.604 60.000 0.00 0.00 0.00 2.85
46 47 1.125633 TGGACCGAATAGCCCCTAAC 58.874 55.000 0.00 0.00 0.00 2.34
47 48 1.975680 GATGGACCGAATAGCCCCTAA 59.024 52.381 0.00 0.00 0.00 2.69
48 49 1.640917 GATGGACCGAATAGCCCCTA 58.359 55.000 0.00 0.00 0.00 3.53
49 50 1.128188 GGATGGACCGAATAGCCCCT 61.128 60.000 0.00 0.00 0.00 4.79
50 51 1.375326 GGATGGACCGAATAGCCCC 59.625 63.158 0.00 0.00 0.00 5.80
79 80 2.830321 ACCTAATTATCCGGGATCGTCC 59.170 50.000 13.97 0.00 35.23 4.79
80 81 4.532314 AACCTAATTATCCGGGATCGTC 57.468 45.455 13.97 0.00 33.95 4.20
81 82 4.465305 CCTAACCTAATTATCCGGGATCGT 59.535 45.833 13.97 0.13 33.95 3.73
82 83 4.142004 CCCTAACCTAATTATCCGGGATCG 60.142 50.000 13.97 0.00 30.39 3.69
83 84 4.163649 CCCCTAACCTAATTATCCGGGATC 59.836 50.000 13.97 0.00 30.39 3.36
84 85 4.109320 CCCCTAACCTAATTATCCGGGAT 58.891 47.826 15.04 15.04 30.39 3.85
85 86 3.144509 TCCCCTAACCTAATTATCCGGGA 59.855 47.826 0.00 0.00 33.28 5.14
86 87 3.262660 GTCCCCTAACCTAATTATCCGGG 59.737 52.174 0.00 0.00 0.00 5.73
87 88 3.262660 GGTCCCCTAACCTAATTATCCGG 59.737 52.174 0.00 0.00 36.32 5.14
88 89 3.262660 GGGTCCCCTAACCTAATTATCCG 59.737 52.174 0.00 0.00 39.42 4.18
89 90 4.245308 TGGGTCCCCTAACCTAATTATCC 58.755 47.826 5.13 0.00 39.42 2.59
90 91 5.917545 TTGGGTCCCCTAACCTAATTATC 57.082 43.478 5.13 0.00 39.42 1.75
95 96 4.856765 TGTTAATTGGGTCCCCTAACCTAA 59.143 41.667 5.13 0.00 43.01 2.69
96 97 4.446519 TGTTAATTGGGTCCCCTAACCTA 58.553 43.478 5.13 0.00 39.42 3.08
97 98 3.270812 TGTTAATTGGGTCCCCTAACCT 58.729 45.455 5.13 0.00 39.42 3.50
98 99 3.743092 TGTTAATTGGGTCCCCTAACC 57.257 47.619 5.13 0.00 38.69 2.85
99 100 5.565242 CGTTTTGTTAATTGGGTCCCCTAAC 60.565 44.000 5.13 10.94 36.94 2.34
100 101 4.523558 CGTTTTGTTAATTGGGTCCCCTAA 59.476 41.667 5.13 0.00 36.94 2.69
101 102 4.080687 CGTTTTGTTAATTGGGTCCCCTA 58.919 43.478 5.13 0.00 36.94 3.53
102 103 2.894765 CGTTTTGTTAATTGGGTCCCCT 59.105 45.455 5.13 0.00 36.94 4.79
103 104 2.028839 CCGTTTTGTTAATTGGGTCCCC 60.029 50.000 5.13 0.00 0.00 4.81
104 105 2.892215 TCCGTTTTGTTAATTGGGTCCC 59.108 45.455 0.00 0.00 0.00 4.46
105 106 3.822167 TCTCCGTTTTGTTAATTGGGTCC 59.178 43.478 0.00 0.00 0.00 4.46
106 107 4.612033 CGTCTCCGTTTTGTTAATTGGGTC 60.612 45.833 0.00 0.00 0.00 4.46
107 108 3.251487 CGTCTCCGTTTTGTTAATTGGGT 59.749 43.478 0.00 0.00 0.00 4.51
108 109 3.817238 CGTCTCCGTTTTGTTAATTGGG 58.183 45.455 0.00 0.00 0.00 4.12
122 123 5.006358 CCCAAACATCTATAAAACGTCTCCG 59.994 44.000 0.00 0.00 40.83 4.63
123 124 5.296035 CCCCAAACATCTATAAAACGTCTCC 59.704 44.000 0.00 0.00 0.00 3.71
124 125 6.110707 TCCCCAAACATCTATAAAACGTCTC 58.889 40.000 0.00 0.00 0.00 3.36
125 126 6.057321 TCCCCAAACATCTATAAAACGTCT 57.943 37.500 0.00 0.00 0.00 4.18
126 127 6.540914 TCATCCCCAAACATCTATAAAACGTC 59.459 38.462 0.00 0.00 0.00 4.34
127 128 6.419791 TCATCCCCAAACATCTATAAAACGT 58.580 36.000 0.00 0.00 0.00 3.99
128 129 6.935741 TCATCCCCAAACATCTATAAAACG 57.064 37.500 0.00 0.00 0.00 3.60
129 130 7.308589 CGGATCATCCCCAAACATCTATAAAAC 60.309 40.741 0.00 0.00 31.13 2.43
130 131 6.714810 CGGATCATCCCCAAACATCTATAAAA 59.285 38.462 0.00 0.00 31.13 1.52
131 132 6.237901 CGGATCATCCCCAAACATCTATAAA 58.762 40.000 0.00 0.00 31.13 1.40
132 133 5.280470 CCGGATCATCCCCAAACATCTATAA 60.280 44.000 0.00 0.00 31.13 0.98
133 134 4.225042 CCGGATCATCCCCAAACATCTATA 59.775 45.833 0.00 0.00 31.13 1.31
134 135 3.009473 CCGGATCATCCCCAAACATCTAT 59.991 47.826 0.00 0.00 31.13 1.98
135 136 2.371841 CCGGATCATCCCCAAACATCTA 59.628 50.000 0.00 0.00 31.13 1.98
136 137 1.143684 CCGGATCATCCCCAAACATCT 59.856 52.381 0.00 0.00 31.13 2.90
137 138 1.142870 TCCGGATCATCCCCAAACATC 59.857 52.381 0.00 0.00 31.13 3.06
138 139 1.133792 GTCCGGATCATCCCCAAACAT 60.134 52.381 7.81 0.00 31.13 2.71
139 140 0.254747 GTCCGGATCATCCCCAAACA 59.745 55.000 7.81 0.00 31.13 2.83
140 141 0.254747 TGTCCGGATCATCCCCAAAC 59.745 55.000 7.81 0.00 31.13 2.93
141 142 0.254747 GTGTCCGGATCATCCCCAAA 59.745 55.000 7.81 0.00 31.13 3.28
142 143 0.912006 TGTGTCCGGATCATCCCCAA 60.912 55.000 7.81 0.00 31.13 4.12
143 144 0.912006 TTGTGTCCGGATCATCCCCA 60.912 55.000 7.81 0.00 31.13 4.96
144 145 0.474184 ATTGTGTCCGGATCATCCCC 59.526 55.000 7.81 0.00 31.13 4.81
145 146 1.597742 CATTGTGTCCGGATCATCCC 58.402 55.000 7.81 0.00 31.13 3.85
146 147 0.947244 GCATTGTGTCCGGATCATCC 59.053 55.000 7.81 0.00 0.00 3.51
147 148 1.600957 CAGCATTGTGTCCGGATCATC 59.399 52.381 7.81 0.00 0.00 2.92
148 149 1.210234 TCAGCATTGTGTCCGGATCAT 59.790 47.619 7.81 0.00 0.00 2.45
149 150 0.612744 TCAGCATTGTGTCCGGATCA 59.387 50.000 7.81 7.91 0.00 2.92
150 151 1.009829 GTCAGCATTGTGTCCGGATC 58.990 55.000 7.81 4.89 0.00 3.36
151 152 0.740868 CGTCAGCATTGTGTCCGGAT 60.741 55.000 7.81 0.00 0.00 4.18
152 153 1.374125 CGTCAGCATTGTGTCCGGA 60.374 57.895 0.00 0.00 0.00 5.14
153 154 1.374125 TCGTCAGCATTGTGTCCGG 60.374 57.895 0.00 0.00 0.00 5.14
154 155 0.667487 AGTCGTCAGCATTGTGTCCG 60.667 55.000 0.00 0.00 0.00 4.79
155 156 0.792640 CAGTCGTCAGCATTGTGTCC 59.207 55.000 0.00 0.00 0.00 4.02
156 157 0.164647 GCAGTCGTCAGCATTGTGTC 59.835 55.000 0.00 0.00 0.00 3.67
157 158 1.230635 GGCAGTCGTCAGCATTGTGT 61.231 55.000 0.00 0.00 0.00 3.72
158 159 1.499056 GGCAGTCGTCAGCATTGTG 59.501 57.895 0.00 0.00 0.00 3.33
159 160 1.672356 GGGCAGTCGTCAGCATTGT 60.672 57.895 0.00 0.00 0.00 2.71
160 161 2.743752 CGGGCAGTCGTCAGCATTG 61.744 63.158 0.00 0.00 0.00 2.82
161 162 2.434884 CGGGCAGTCGTCAGCATT 60.435 61.111 0.00 0.00 0.00 3.56
162 163 4.457496 CCGGGCAGTCGTCAGCAT 62.457 66.667 0.00 0.00 0.00 3.79
165 166 4.436998 GACCCGGGCAGTCGTCAG 62.437 72.222 24.08 0.00 0.00 3.51
180 181 2.793160 GAAACTTCCCCGGACCCGAC 62.793 65.000 10.42 0.00 42.83 4.79
181 182 2.527374 AAACTTCCCCGGACCCGA 60.527 61.111 10.42 0.00 42.83 5.14
182 183 2.046604 GAAACTTCCCCGGACCCG 60.047 66.667 0.73 0.66 39.44 5.28
183 184 1.002502 CTGAAACTTCCCCGGACCC 60.003 63.158 0.73 0.00 0.00 4.46
184 185 0.321387 GTCTGAAACTTCCCCGGACC 60.321 60.000 0.73 0.00 0.00 4.46
185 186 0.669625 CGTCTGAAACTTCCCCGGAC 60.670 60.000 0.73 0.00 0.00 4.79
186 187 1.669440 CGTCTGAAACTTCCCCGGA 59.331 57.895 0.73 0.00 0.00 5.14
187 188 2.033194 GCGTCTGAAACTTCCCCGG 61.033 63.158 0.00 0.00 0.00 5.73
188 189 2.380410 CGCGTCTGAAACTTCCCCG 61.380 63.158 0.00 0.00 0.00 5.73
189 190 2.677979 GCGCGTCTGAAACTTCCCC 61.678 63.158 8.43 0.00 0.00 4.81
190 191 1.959226 TGCGCGTCTGAAACTTCCC 60.959 57.895 8.43 0.00 0.00 3.97
191 192 1.204312 GTGCGCGTCTGAAACTTCC 59.796 57.895 8.43 0.00 0.00 3.46
192 193 1.154836 CGTGCGCGTCTGAAACTTC 60.155 57.895 12.43 0.00 0.00 3.01
193 194 2.928361 CGTGCGCGTCTGAAACTT 59.072 55.556 12.43 0.00 0.00 2.66
206 207 4.309950 AACCGACCCCTCACGTGC 62.310 66.667 11.67 0.00 0.00 5.34
207 208 2.357034 CAACCGACCCCTCACGTG 60.357 66.667 9.94 9.94 0.00 4.49
208 209 3.622826 CCAACCGACCCCTCACGT 61.623 66.667 0.00 0.00 0.00 4.49
209 210 2.874664 TTCCAACCGACCCCTCACG 61.875 63.158 0.00 0.00 0.00 4.35
210 211 1.302271 GTTCCAACCGACCCCTCAC 60.302 63.158 0.00 0.00 0.00 3.51
211 212 1.057851 AAGTTCCAACCGACCCCTCA 61.058 55.000 0.00 0.00 0.00 3.86
212 213 0.605589 CAAGTTCCAACCGACCCCTC 60.606 60.000 0.00 0.00 0.00 4.30
213 214 1.350310 ACAAGTTCCAACCGACCCCT 61.350 55.000 0.00 0.00 0.00 4.79
214 215 1.149854 ACAAGTTCCAACCGACCCC 59.850 57.895 0.00 0.00 0.00 4.95
215 216 1.170290 CCACAAGTTCCAACCGACCC 61.170 60.000 0.00 0.00 0.00 4.46
216 217 1.170290 CCCACAAGTTCCAACCGACC 61.170 60.000 0.00 0.00 0.00 4.79
217 218 1.792118 GCCCACAAGTTCCAACCGAC 61.792 60.000 0.00 0.00 0.00 4.79
218 219 1.527380 GCCCACAAGTTCCAACCGA 60.527 57.895 0.00 0.00 0.00 4.69
219 220 1.528309 AGCCCACAAGTTCCAACCG 60.528 57.895 0.00 0.00 0.00 4.44
220 221 0.755327 ACAGCCCACAAGTTCCAACC 60.755 55.000 0.00 0.00 0.00 3.77
221 222 0.385390 CACAGCCCACAAGTTCCAAC 59.615 55.000 0.00 0.00 0.00 3.77
222 223 1.391157 GCACAGCCCACAAGTTCCAA 61.391 55.000 0.00 0.00 0.00 3.53
223 224 1.827789 GCACAGCCCACAAGTTCCA 60.828 57.895 0.00 0.00 0.00 3.53
224 225 1.799258 CTGCACAGCCCACAAGTTCC 61.799 60.000 0.00 0.00 0.00 3.62
225 226 0.819259 TCTGCACAGCCCACAAGTTC 60.819 55.000 0.00 0.00 0.00 3.01
226 227 0.395586 TTCTGCACAGCCCACAAGTT 60.396 50.000 0.00 0.00 0.00 2.66
227 228 0.820891 CTTCTGCACAGCCCACAAGT 60.821 55.000 0.00 0.00 0.00 3.16
228 229 1.521450 CCTTCTGCACAGCCCACAAG 61.521 60.000 0.00 0.00 0.00 3.16
229 230 1.529010 CCTTCTGCACAGCCCACAA 60.529 57.895 0.00 0.00 0.00 3.33
230 231 2.113774 CCTTCTGCACAGCCCACA 59.886 61.111 0.00 0.00 0.00 4.17
231 232 2.674380 CCCTTCTGCACAGCCCAC 60.674 66.667 0.00 0.00 0.00 4.61
232 233 4.666253 GCCCTTCTGCACAGCCCA 62.666 66.667 0.00 0.00 0.00 5.36
233 234 4.357279 AGCCCTTCTGCACAGCCC 62.357 66.667 0.00 0.00 0.00 5.19
234 235 2.749441 GAGCCCTTCTGCACAGCC 60.749 66.667 0.00 0.00 0.00 4.85
235 236 3.123620 CGAGCCCTTCTGCACAGC 61.124 66.667 0.00 0.00 0.00 4.40
236 237 1.447489 CTCGAGCCCTTCTGCACAG 60.447 63.158 0.00 0.00 0.00 3.66
237 238 2.659016 CTCGAGCCCTTCTGCACA 59.341 61.111 0.00 0.00 0.00 4.57
238 239 2.817396 GCTCGAGCCCTTCTGCAC 60.817 66.667 27.22 0.00 34.31 4.57
239 240 2.999648 AGCTCGAGCCCTTCTGCA 61.000 61.111 32.94 0.00 43.38 4.41
240 241 2.511145 CAGCTCGAGCCCTTCTGC 60.511 66.667 32.94 7.40 43.38 4.26
241 242 1.141449 CTCAGCTCGAGCCCTTCTG 59.859 63.158 32.94 23.46 43.38 3.02
242 243 1.000270 TCTCAGCTCGAGCCCTTCT 60.000 57.895 32.94 12.34 41.98 2.85
243 244 1.034838 TCTCTCAGCTCGAGCCCTTC 61.035 60.000 32.94 6.32 41.98 3.46
244 245 0.613292 TTCTCTCAGCTCGAGCCCTT 60.613 55.000 32.94 13.17 41.98 3.95
245 246 1.000270 TTCTCTCAGCTCGAGCCCT 60.000 57.895 32.94 13.99 41.98 5.19
246 247 3.609703 TTCTCTCAGCTCGAGCCC 58.390 61.111 32.94 7.95 41.98 5.19
632 633 1.009335 GTTCGTTTGACGCCCCAAC 60.009 57.895 0.00 0.00 42.21 3.77
633 634 1.153127 AGTTCGTTTGACGCCCCAA 60.153 52.632 0.00 0.00 42.21 4.12
634 635 1.595929 GAGTTCGTTTGACGCCCCA 60.596 57.895 0.00 0.00 42.21 4.96
635 636 2.322830 GGAGTTCGTTTGACGCCCC 61.323 63.158 0.00 0.00 42.21 5.80
636 637 2.664436 CGGAGTTCGTTTGACGCCC 61.664 63.158 0.00 0.00 42.21 6.13
637 638 1.216941 TTCGGAGTTCGTTTGACGCC 61.217 55.000 0.00 0.00 42.21 5.68
638 639 0.788391 ATTCGGAGTTCGTTTGACGC 59.212 50.000 0.00 0.00 42.21 5.19
639 640 1.461888 GCATTCGGAGTTCGTTTGACG 60.462 52.381 0.00 0.00 44.19 4.35
640 641 1.461888 CGCATTCGGAGTTCGTTTGAC 60.462 52.381 0.00 0.00 40.32 3.18
641 642 0.787787 CGCATTCGGAGTTCGTTTGA 59.212 50.000 0.00 0.00 40.32 2.69
642 643 0.787787 TCGCATTCGGAGTTCGTTTG 59.212 50.000 0.00 0.00 40.32 2.93
643 644 1.393539 CATCGCATTCGGAGTTCGTTT 59.606 47.619 0.00 0.00 40.32 3.60
644 645 0.999406 CATCGCATTCGGAGTTCGTT 59.001 50.000 0.00 0.00 40.32 3.85
645 646 0.172578 TCATCGCATTCGGAGTTCGT 59.827 50.000 0.00 0.00 40.32 3.85
646 647 1.277326 TTCATCGCATTCGGAGTTCG 58.723 50.000 0.00 0.00 40.90 3.95
647 648 3.951979 ATTTCATCGCATTCGGAGTTC 57.048 42.857 0.00 0.00 36.13 3.01
648 649 4.155826 TCAAATTTCATCGCATTCGGAGTT 59.844 37.500 0.00 0.00 36.13 3.01
649 650 3.689161 TCAAATTTCATCGCATTCGGAGT 59.311 39.130 0.00 0.00 36.13 3.85
650 651 4.031028 GTCAAATTTCATCGCATTCGGAG 58.969 43.478 0.00 0.00 36.13 4.63
651 652 3.438434 TGTCAAATTTCATCGCATTCGGA 59.562 39.130 0.00 0.00 36.13 4.55
652 653 3.757184 TGTCAAATTTCATCGCATTCGG 58.243 40.909 0.00 0.00 36.13 4.30
653 654 3.787634 CCTGTCAAATTTCATCGCATTCG 59.212 43.478 0.00 0.00 0.00 3.34
654 655 4.985413 TCCTGTCAAATTTCATCGCATTC 58.015 39.130 0.00 0.00 0.00 2.67
655 656 4.142315 CCTCCTGTCAAATTTCATCGCATT 60.142 41.667 0.00 0.00 0.00 3.56
656 657 3.379372 CCTCCTGTCAAATTTCATCGCAT 59.621 43.478 0.00 0.00 0.00 4.73
657 658 2.749076 CCTCCTGTCAAATTTCATCGCA 59.251 45.455 0.00 0.00 0.00 5.10
658 659 2.749621 ACCTCCTGTCAAATTTCATCGC 59.250 45.455 0.00 0.00 0.00 4.58
659 660 4.606457 GACCTCCTGTCAAATTTCATCG 57.394 45.455 0.00 0.00 43.85 3.84
681 682 8.509690 GCGTGTGGTCTTATTATAGTGTAGATA 58.490 37.037 0.00 0.00 0.00 1.98
682 683 7.368833 GCGTGTGGTCTTATTATAGTGTAGAT 58.631 38.462 0.00 0.00 0.00 1.98
683 684 6.238842 GGCGTGTGGTCTTATTATAGTGTAGA 60.239 42.308 0.00 0.00 0.00 2.59
684 685 5.919141 GGCGTGTGGTCTTATTATAGTGTAG 59.081 44.000 0.00 0.00 0.00 2.74
685 686 5.360429 TGGCGTGTGGTCTTATTATAGTGTA 59.640 40.000 0.00 0.00 0.00 2.90
686 687 4.160814 TGGCGTGTGGTCTTATTATAGTGT 59.839 41.667 0.00 0.00 0.00 3.55
687 688 4.689071 TGGCGTGTGGTCTTATTATAGTG 58.311 43.478 0.00 0.00 0.00 2.74
688 689 5.105064 AGTTGGCGTGTGGTCTTATTATAGT 60.105 40.000 0.00 0.00 0.00 2.12
689 690 5.357257 AGTTGGCGTGTGGTCTTATTATAG 58.643 41.667 0.00 0.00 0.00 1.31
690 691 5.347620 AGTTGGCGTGTGGTCTTATTATA 57.652 39.130 0.00 0.00 0.00 0.98
691 692 4.216411 AGTTGGCGTGTGGTCTTATTAT 57.784 40.909 0.00 0.00 0.00 1.28
692 693 3.688694 AGTTGGCGTGTGGTCTTATTA 57.311 42.857 0.00 0.00 0.00 0.98
693 694 2.561478 AGTTGGCGTGTGGTCTTATT 57.439 45.000 0.00 0.00 0.00 1.40
694 695 2.561478 AAGTTGGCGTGTGGTCTTAT 57.439 45.000 0.00 0.00 0.00 1.73
695 696 2.215196 GAAAGTTGGCGTGTGGTCTTA 58.785 47.619 0.00 0.00 0.00 2.10
696 697 1.021968 GAAAGTTGGCGTGTGGTCTT 58.978 50.000 0.00 0.00 0.00 3.01
697 698 0.107410 TGAAAGTTGGCGTGTGGTCT 60.107 50.000 0.00 0.00 0.00 3.85
698 699 0.736053 TTGAAAGTTGGCGTGTGGTC 59.264 50.000 0.00 0.00 0.00 4.02
699 700 0.454196 GTTGAAAGTTGGCGTGTGGT 59.546 50.000 0.00 0.00 0.00 4.16
700 701 0.248866 GGTTGAAAGTTGGCGTGTGG 60.249 55.000 0.00 0.00 0.00 4.17
701 702 0.248866 GGGTTGAAAGTTGGCGTGTG 60.249 55.000 0.00 0.00 0.00 3.82
702 703 0.681564 TGGGTTGAAAGTTGGCGTGT 60.682 50.000 0.00 0.00 0.00 4.49
703 704 0.673437 ATGGGTTGAAAGTTGGCGTG 59.327 50.000 0.00 0.00 0.00 5.34
704 705 1.339929 GAATGGGTTGAAAGTTGGCGT 59.660 47.619 0.00 0.00 0.00 5.68
705 706 1.336795 GGAATGGGTTGAAAGTTGGCG 60.337 52.381 0.00 0.00 0.00 5.69
706 707 1.336795 CGGAATGGGTTGAAAGTTGGC 60.337 52.381 0.00 0.00 0.00 4.52
707 708 2.228822 CTCGGAATGGGTTGAAAGTTGG 59.771 50.000 0.00 0.00 0.00 3.77
708 709 3.146066 TCTCGGAATGGGTTGAAAGTTG 58.854 45.455 0.00 0.00 0.00 3.16
709 710 3.502123 TCTCGGAATGGGTTGAAAGTT 57.498 42.857 0.00 0.00 0.00 2.66
710 711 3.146847 GTTCTCGGAATGGGTTGAAAGT 58.853 45.455 0.00 0.00 0.00 2.66
711 712 3.146066 TGTTCTCGGAATGGGTTGAAAG 58.854 45.455 0.00 0.00 0.00 2.62
712 713 3.216187 TGTTCTCGGAATGGGTTGAAA 57.784 42.857 0.00 0.00 0.00 2.69
713 714 2.940994 TGTTCTCGGAATGGGTTGAA 57.059 45.000 0.00 0.00 0.00 2.69
714 715 3.433306 AATGTTCTCGGAATGGGTTGA 57.567 42.857 0.00 0.00 0.00 3.18
715 716 4.218417 AGAAAATGTTCTCGGAATGGGTTG 59.782 41.667 0.00 0.00 40.18 3.77
716 717 4.218417 CAGAAAATGTTCTCGGAATGGGTT 59.782 41.667 0.00 0.00 42.45 4.11
717 718 3.758554 CAGAAAATGTTCTCGGAATGGGT 59.241 43.478 0.00 0.00 42.45 4.51
718 719 3.129287 CCAGAAAATGTTCTCGGAATGGG 59.871 47.826 0.00 0.00 42.45 4.00
719 720 3.428045 GCCAGAAAATGTTCTCGGAATGG 60.428 47.826 14.76 6.63 42.45 3.16
720 721 3.428045 GGCCAGAAAATGTTCTCGGAATG 60.428 47.826 14.76 0.00 42.45 2.67
721 722 2.755103 GGCCAGAAAATGTTCTCGGAAT 59.245 45.455 14.76 0.00 42.45 3.01
722 723 2.159382 GGCCAGAAAATGTTCTCGGAA 58.841 47.619 14.76 0.00 42.45 4.30
723 724 1.073125 TGGCCAGAAAATGTTCTCGGA 59.927 47.619 0.00 0.00 42.45 4.55
724 725 1.200020 GTGGCCAGAAAATGTTCTCGG 59.800 52.381 5.11 2.75 42.45 4.63
725 726 2.154462 AGTGGCCAGAAAATGTTCTCG 58.846 47.619 5.11 0.00 42.45 4.04
726 727 5.904362 ATAAGTGGCCAGAAAATGTTCTC 57.096 39.130 5.11 0.00 42.45 2.87
727 728 7.775053 TTTATAAGTGGCCAGAAAATGTTCT 57.225 32.000 5.11 0.00 45.36 3.01
746 747 9.549509 GCGGCATGTTCGAAATATTATTTTATA 57.450 29.630 0.00 0.00 0.00 0.98
747 748 7.270365 CGCGGCATGTTCGAAATATTATTTTAT 59.730 33.333 0.00 0.00 0.00 1.40
748 749 6.575572 CGCGGCATGTTCGAAATATTATTTTA 59.424 34.615 0.00 0.00 0.00 1.52
749 750 5.398122 CGCGGCATGTTCGAAATATTATTTT 59.602 36.000 0.00 0.00 0.00 1.82
750 751 4.909305 CGCGGCATGTTCGAAATATTATTT 59.091 37.500 0.00 1.25 0.00 1.40
751 752 4.463209 CGCGGCATGTTCGAAATATTATT 58.537 39.130 0.00 0.00 0.00 1.40
752 753 3.120338 CCGCGGCATGTTCGAAATATTAT 60.120 43.478 14.67 0.00 0.00 1.28
753 754 2.222213 CCGCGGCATGTTCGAAATATTA 59.778 45.455 14.67 0.00 0.00 0.98
754 755 1.002900 CCGCGGCATGTTCGAAATATT 60.003 47.619 14.67 0.00 0.00 1.28
755 756 0.586319 CCGCGGCATGTTCGAAATAT 59.414 50.000 14.67 0.00 0.00 1.28
756 757 0.460459 TCCGCGGCATGTTCGAAATA 60.460 50.000 23.51 0.00 0.00 1.40
757 758 1.743623 TCCGCGGCATGTTCGAAAT 60.744 52.632 23.51 0.00 0.00 2.17
758 759 2.357638 TCCGCGGCATGTTCGAAA 60.358 55.556 23.51 0.00 0.00 3.46
759 760 3.115892 GTCCGCGGCATGTTCGAA 61.116 61.111 23.51 0.00 0.00 3.71
772 773 4.354212 CACACTTGCACGCGTCCG 62.354 66.667 9.86 0.00 41.14 4.79
773 774 3.223435 GACACACTTGCACGCGTCC 62.223 63.158 9.86 0.00 0.00 4.79
774 775 2.237751 AGACACACTTGCACGCGTC 61.238 57.895 9.86 5.12 0.00 5.19
775 776 2.202878 AGACACACTTGCACGCGT 60.203 55.556 5.58 5.58 0.00 6.01
776 777 2.246397 CAGACACACTTGCACGCG 59.754 61.111 3.53 3.53 0.00 6.01
777 778 2.633657 CCAGACACACTTGCACGC 59.366 61.111 0.00 0.00 0.00 5.34
778 779 2.896801 GCCCAGACACACTTGCACG 61.897 63.158 0.00 0.00 0.00 5.34
779 780 1.510480 GAGCCCAGACACACTTGCAC 61.510 60.000 0.00 0.00 0.00 4.57
780 781 1.227943 GAGCCCAGACACACTTGCA 60.228 57.895 0.00 0.00 0.00 4.08
781 782 1.227943 TGAGCCCAGACACACTTGC 60.228 57.895 0.00 0.00 0.00 4.01
782 783 0.394192 TCTGAGCCCAGACACACTTG 59.606 55.000 0.00 0.00 44.01 3.16
783 784 2.840199 TCTGAGCCCAGACACACTT 58.160 52.632 0.00 0.00 44.01 3.16
784 785 4.627394 TCTGAGCCCAGACACACT 57.373 55.556 0.00 0.00 44.01 3.55
790 791 1.003580 GTTGTCCATTCTGAGCCCAGA 59.996 52.381 0.00 0.00 46.95 3.86
791 792 1.457346 GTTGTCCATTCTGAGCCCAG 58.543 55.000 0.00 0.00 41.74 4.45
792 793 0.321564 CGTTGTCCATTCTGAGCCCA 60.322 55.000 0.00 0.00 0.00 5.36
793 794 1.026718 CCGTTGTCCATTCTGAGCCC 61.027 60.000 0.00 0.00 0.00 5.19
794 795 0.036388 TCCGTTGTCCATTCTGAGCC 60.036 55.000 0.00 0.00 0.00 4.70
795 796 1.079503 GTCCGTTGTCCATTCTGAGC 58.920 55.000 0.00 0.00 0.00 4.26
796 797 1.350193 CGTCCGTTGTCCATTCTGAG 58.650 55.000 0.00 0.00 0.00 3.35
797 798 0.037697 CCGTCCGTTGTCCATTCTGA 60.038 55.000 0.00 0.00 0.00 3.27
798 799 0.037697 TCCGTCCGTTGTCCATTCTG 60.038 55.000 0.00 0.00 0.00 3.02
799 800 0.682852 TTCCGTCCGTTGTCCATTCT 59.317 50.000 0.00 0.00 0.00 2.40
800 801 0.794473 GTTCCGTCCGTTGTCCATTC 59.206 55.000 0.00 0.00 0.00 2.67
801 802 0.395312 AGTTCCGTCCGTTGTCCATT 59.605 50.000 0.00 0.00 0.00 3.16
802 803 0.320421 CAGTTCCGTCCGTTGTCCAT 60.320 55.000 0.00 0.00 0.00 3.41
803 804 1.068417 CAGTTCCGTCCGTTGTCCA 59.932 57.895 0.00 0.00 0.00 4.02
804 805 1.666872 CCAGTTCCGTCCGTTGTCC 60.667 63.158 0.00 0.00 0.00 4.02
805 806 1.666872 CCCAGTTCCGTCCGTTGTC 60.667 63.158 0.00 0.00 0.00 3.18
806 807 2.424302 CCCAGTTCCGTCCGTTGT 59.576 61.111 0.00 0.00 0.00 3.32
807 808 2.358247 CCCCAGTTCCGTCCGTTG 60.358 66.667 0.00 0.00 0.00 4.10
808 809 3.633116 CCCCCAGTTCCGTCCGTT 61.633 66.667 0.00 0.00 0.00 4.44
825 826 2.404186 GCATCCGTCCGGGTTTTCC 61.404 63.158 0.00 0.00 37.00 3.13
826 827 1.238625 TTGCATCCGTCCGGGTTTTC 61.239 55.000 0.00 0.00 37.00 2.29
827 828 1.228306 TTGCATCCGTCCGGGTTTT 60.228 52.632 0.00 0.00 37.00 2.43
828 829 1.674322 CTTGCATCCGTCCGGGTTT 60.674 57.895 0.00 0.00 37.00 3.27
829 830 2.046314 CTTGCATCCGTCCGGGTT 60.046 61.111 0.00 0.00 37.00 4.11
830 831 2.406002 AAACTTGCATCCGTCCGGGT 62.406 55.000 0.00 0.00 37.00 5.28
831 832 1.241315 AAAACTTGCATCCGTCCGGG 61.241 55.000 0.00 0.00 35.59 5.73
832 833 0.109781 CAAAACTTGCATCCGTCCGG 60.110 55.000 0.00 0.00 0.00 5.14
833 834 0.871722 TCAAAACTTGCATCCGTCCG 59.128 50.000 0.00 0.00 0.00 4.79
834 835 3.363341 TTTCAAAACTTGCATCCGTCC 57.637 42.857 0.00 0.00 0.00 4.79
835 836 4.109050 TGTTTTCAAAACTTGCATCCGTC 58.891 39.130 14.10 0.00 0.00 4.79
836 837 4.116747 TGTTTTCAAAACTTGCATCCGT 57.883 36.364 14.10 0.00 0.00 4.69
837 838 4.608890 GCATGTTTTCAAAACTTGCATCCG 60.609 41.667 33.12 11.26 45.19 4.18
838 839 4.775664 GCATGTTTTCAAAACTTGCATCC 58.224 39.130 33.12 14.86 45.19 3.51
842 843 5.437263 CATCTGCATGTTTTCAAAACTTGC 58.563 37.500 32.19 32.19 45.70 4.01
843 844 5.437263 GCATCTGCATGTTTTCAAAACTTG 58.563 37.500 19.73 19.73 41.59 3.16
844 845 5.662211 GCATCTGCATGTTTTCAAAACTT 57.338 34.783 14.10 5.11 41.59 2.66
858 859 9.180551 CATGTCATCATCCATATTGCATCTGCA 62.181 40.741 0.00 0.00 39.80 4.41
859 860 4.457949 TGTCATCATCCATATTGCATCTGC 59.542 41.667 0.00 0.00 42.50 4.26
860 861 6.404734 CCATGTCATCATCCATATTGCATCTG 60.405 42.308 0.00 0.00 31.15 2.90
861 862 5.652452 CCATGTCATCATCCATATTGCATCT 59.348 40.000 0.00 0.00 31.15 2.90
862 863 5.678871 GCCATGTCATCATCCATATTGCATC 60.679 44.000 0.00 0.00 31.15 3.91
863 864 4.159693 GCCATGTCATCATCCATATTGCAT 59.840 41.667 0.00 0.00 31.15 3.96
864 865 3.508402 GCCATGTCATCATCCATATTGCA 59.492 43.478 0.00 0.00 31.15 4.08
865 866 3.508402 TGCCATGTCATCATCCATATTGC 59.492 43.478 0.00 0.00 31.15 3.56
866 867 5.475564 TCTTGCCATGTCATCATCCATATTG 59.524 40.000 0.00 0.00 31.15 1.90
867 868 5.637127 TCTTGCCATGTCATCATCCATATT 58.363 37.500 0.00 0.00 31.15 1.28
868 869 5.251182 TCTTGCCATGTCATCATCCATAT 57.749 39.130 0.00 0.00 31.15 1.78
869 870 4.710313 TCTTGCCATGTCATCATCCATA 57.290 40.909 0.00 0.00 31.15 2.74
870 871 3.588210 TCTTGCCATGTCATCATCCAT 57.412 42.857 0.00 0.00 31.15 3.41
871 872 3.219281 CATCTTGCCATGTCATCATCCA 58.781 45.455 0.00 0.00 31.15 3.41
872 873 2.030185 GCATCTTGCCATGTCATCATCC 60.030 50.000 0.00 0.00 37.42 3.51
873 874 2.621526 TGCATCTTGCCATGTCATCATC 59.378 45.455 0.00 0.00 44.23 2.92
874 875 2.661718 TGCATCTTGCCATGTCATCAT 58.338 42.857 0.00 0.00 44.23 2.45
875 876 2.131776 TGCATCTTGCCATGTCATCA 57.868 45.000 0.00 0.00 44.23 3.07
876 877 2.164827 TGTTGCATCTTGCCATGTCATC 59.835 45.455 0.00 0.00 44.23 2.92
877 878 2.094390 GTGTTGCATCTTGCCATGTCAT 60.094 45.455 0.00 0.00 44.23 3.06
878 879 1.270274 GTGTTGCATCTTGCCATGTCA 59.730 47.619 0.00 0.00 44.23 3.58
879 880 1.730121 CGTGTTGCATCTTGCCATGTC 60.730 52.381 0.00 0.00 44.23 3.06
880 881 0.241749 CGTGTTGCATCTTGCCATGT 59.758 50.000 0.00 0.00 44.23 3.21
881 882 1.074319 GCGTGTTGCATCTTGCCATG 61.074 55.000 0.00 0.00 44.23 3.66
882 883 1.213537 GCGTGTTGCATCTTGCCAT 59.786 52.632 0.00 0.00 44.23 4.40
883 884 2.644418 GCGTGTTGCATCTTGCCA 59.356 55.556 0.00 0.00 44.23 4.92
892 893 1.082169 TCATTCGCTTGCGTGTTGC 60.082 52.632 14.70 0.00 46.70 4.17
893 894 0.041400 TGTCATTCGCTTGCGTGTTG 60.041 50.000 14.70 10.59 0.00 3.33
894 895 0.874390 ATGTCATTCGCTTGCGTGTT 59.126 45.000 14.70 0.00 0.00 3.32
895 896 0.166597 CATGTCATTCGCTTGCGTGT 59.833 50.000 14.70 2.31 0.00 4.49
896 897 0.521867 CCATGTCATTCGCTTGCGTG 60.522 55.000 14.70 7.05 0.00 5.34
897 898 1.796151 CCATGTCATTCGCTTGCGT 59.204 52.632 14.70 0.00 0.00 5.24
898 899 1.584483 GCCATGTCATTCGCTTGCG 60.584 57.895 8.87 8.87 0.00 4.85
899 900 0.109179 TTGCCATGTCATTCGCTTGC 60.109 50.000 0.00 0.00 0.00 4.01
900 901 1.621107 GTTGCCATGTCATTCGCTTG 58.379 50.000 0.00 0.00 0.00 4.01
901 902 0.168788 CGTTGCCATGTCATTCGCTT 59.831 50.000 0.00 0.00 0.00 4.68
902 903 1.796151 CGTTGCCATGTCATTCGCT 59.204 52.632 0.00 0.00 0.00 4.93
903 904 1.869132 GCGTTGCCATGTCATTCGC 60.869 57.895 10.06 10.06 34.62 4.70
904 905 4.365287 GCGTTGCCATGTCATTCG 57.635 55.556 0.00 0.00 0.00 3.34
914 915 3.501548 TTATTCGCCGGCGTTGCC 61.502 61.111 44.16 6.58 46.75 4.52
915 916 2.277057 GTTATTCGCCGGCGTTGC 60.277 61.111 44.16 27.09 40.74 4.17
916 917 1.060308 CAGTTATTCGCCGGCGTTG 59.940 57.895 44.16 28.14 40.74 4.10
917 918 2.104253 CCAGTTATTCGCCGGCGTT 61.104 57.895 44.16 33.87 40.74 4.84
918 919 2.510064 TTCCAGTTATTCGCCGGCGT 62.510 55.000 44.16 30.82 40.74 5.68
919 920 1.762222 CTTCCAGTTATTCGCCGGCG 61.762 60.000 42.13 42.13 41.35 6.46
920 921 0.461339 TCTTCCAGTTATTCGCCGGC 60.461 55.000 19.07 19.07 0.00 6.13
921 922 1.287425 GTCTTCCAGTTATTCGCCGG 58.713 55.000 0.00 0.00 0.00 6.13
922 923 1.659098 GTGTCTTCCAGTTATTCGCCG 59.341 52.381 0.00 0.00 0.00 6.46
923 924 2.973945 AGTGTCTTCCAGTTATTCGCC 58.026 47.619 0.00 0.00 0.00 5.54
924 925 3.125316 CCAAGTGTCTTCCAGTTATTCGC 59.875 47.826 0.00 0.00 34.89 4.70
925 926 3.125316 GCCAAGTGTCTTCCAGTTATTCG 59.875 47.826 0.00 0.00 34.89 3.34
926 927 4.072131 TGCCAAGTGTCTTCCAGTTATTC 58.928 43.478 0.00 0.00 34.89 1.75
927 928 3.821033 GTGCCAAGTGTCTTCCAGTTATT 59.179 43.478 0.00 0.00 34.89 1.40
928 929 3.181445 TGTGCCAAGTGTCTTCCAGTTAT 60.181 43.478 0.00 0.00 34.89 1.89
929 930 2.171659 TGTGCCAAGTGTCTTCCAGTTA 59.828 45.455 0.00 0.00 34.89 2.24
930 931 1.064758 TGTGCCAAGTGTCTTCCAGTT 60.065 47.619 0.00 0.00 37.18 3.16
931 932 0.546122 TGTGCCAAGTGTCTTCCAGT 59.454 50.000 0.00 0.00 0.00 4.00
932 933 1.334869 GTTGTGCCAAGTGTCTTCCAG 59.665 52.381 0.00 0.00 0.00 3.86
933 934 1.388547 GTTGTGCCAAGTGTCTTCCA 58.611 50.000 0.00 0.00 0.00 3.53
934 935 0.307760 CGTTGTGCCAAGTGTCTTCC 59.692 55.000 0.00 0.00 0.00 3.46
935 936 0.307760 CCGTTGTGCCAAGTGTCTTC 59.692 55.000 0.00 0.00 0.00 2.87
936 937 0.393808 ACCGTTGTGCCAAGTGTCTT 60.394 50.000 0.00 0.00 0.00 3.01
937 938 0.814010 GACCGTTGTGCCAAGTGTCT 60.814 55.000 8.35 0.00 0.00 3.41
938 939 0.814010 AGACCGTTGTGCCAAGTGTC 60.814 55.000 7.87 7.87 0.00 3.67
939 940 0.814010 GAGACCGTTGTGCCAAGTGT 60.814 55.000 0.00 0.00 0.00 3.55
940 941 1.831389 CGAGACCGTTGTGCCAAGTG 61.831 60.000 0.00 0.00 0.00 3.16
941 942 1.594293 CGAGACCGTTGTGCCAAGT 60.594 57.895 0.00 0.00 0.00 3.16
942 943 2.317609 CCGAGACCGTTGTGCCAAG 61.318 63.158 0.00 0.00 0.00 3.61
943 944 2.280524 CCGAGACCGTTGTGCCAA 60.281 61.111 0.00 0.00 0.00 4.52
944 945 4.308458 CCCGAGACCGTTGTGCCA 62.308 66.667 0.00 0.00 0.00 4.92
949 950 3.285523 TAACGCCCCGAGACCGTTG 62.286 63.158 7.77 0.00 43.93 4.10
950 951 2.990967 TAACGCCCCGAGACCGTT 60.991 61.111 3.17 3.17 45.72 4.44
951 952 3.752339 GTAACGCCCCGAGACCGT 61.752 66.667 0.00 0.00 36.68 4.83
952 953 3.751246 TGTAACGCCCCGAGACCG 61.751 66.667 0.00 0.00 0.00 4.79
953 954 2.125793 GTGTAACGCCCCGAGACC 60.126 66.667 0.00 0.00 0.00 3.85
954 955 2.125793 GGTGTAACGCCCCGAGAC 60.126 66.667 0.00 0.00 38.12 3.36
955 956 1.985662 ATGGTGTAACGCCCCGAGA 60.986 57.895 0.00 0.00 38.12 4.04
956 957 1.813753 CATGGTGTAACGCCCCGAG 60.814 63.158 0.00 0.00 38.12 4.63
957 958 2.266372 CATGGTGTAACGCCCCGA 59.734 61.111 0.00 0.00 38.12 5.14
958 959 2.822255 CCATGGTGTAACGCCCCG 60.822 66.667 2.57 0.00 38.12 5.73
959 960 1.747745 GACCATGGTGTAACGCCCC 60.748 63.158 25.52 0.00 38.12 5.80
960 961 2.104253 CGACCATGGTGTAACGCCC 61.104 63.158 25.52 3.72 38.12 6.13
961 962 2.104253 CCGACCATGGTGTAACGCC 61.104 63.158 25.52 4.57 38.12 5.68
962 963 2.746803 GCCGACCATGGTGTAACGC 61.747 63.158 25.52 12.06 38.12 4.84
963 964 2.104253 GGCCGACCATGGTGTAACG 61.104 63.158 25.52 19.22 34.19 3.18
964 965 1.747745 GGGCCGACCATGGTGTAAC 60.748 63.158 25.52 6.68 39.85 2.50
965 966 2.672295 GGGCCGACCATGGTGTAA 59.328 61.111 25.52 0.00 39.85 2.41
966 967 3.404438 GGGGCCGACCATGGTGTA 61.404 66.667 25.52 0.00 42.91 2.90
1065 1066 1.002134 GTGCAGGAAGGCAAGGCTA 60.002 57.895 0.00 0.00 46.93 3.93
1071 1072 1.108727 CAAAGTGGTGCAGGAAGGCA 61.109 55.000 0.00 0.00 42.53 4.75
1125 1126 1.372087 CCTTGGCAGATGAAGACCGC 61.372 60.000 0.00 0.00 0.00 5.68
1161 1162 1.134401 CAGGGTACTTGACGCATCCAT 60.134 52.381 0.00 0.00 43.40 3.41
1169 1170 1.377333 GGGCAGCAGGGTACTTGAC 60.377 63.158 0.00 0.00 0.00 3.18
1212 1213 0.309302 CAAAAACACCGGTCATCGCA 59.691 50.000 2.59 0.00 37.59 5.10
1214 1215 2.350388 CCTTCAAAAACACCGGTCATCG 60.350 50.000 2.59 0.00 38.88 3.84
1217 1218 0.741915 GCCTTCAAAAACACCGGTCA 59.258 50.000 2.59 0.00 0.00 4.02
1230 1231 0.698238 ATGGTACTTGGCAGCCTTCA 59.302 50.000 14.15 2.41 0.00 3.02
1259 1260 2.201708 TGTGGTAGTCGTTCGGGCA 61.202 57.895 0.00 0.00 0.00 5.36
1284 1285 1.606994 GGCGTGTCCATGTACTTGACA 60.607 52.381 10.20 9.02 43.97 3.58
1328 1329 1.005097 TCTTCGGTGCTAGGGTAGTCA 59.995 52.381 0.00 0.00 0.00 3.41
1336 1337 0.895530 TCCAAGGTCTTCGGTGCTAG 59.104 55.000 0.00 0.00 0.00 3.42
1341 1342 1.299976 GGCATCCAAGGTCTTCGGT 59.700 57.895 0.00 0.00 0.00 4.69
1369 1370 0.171007 TACTTAGCGTTTCGGTCCGG 59.829 55.000 12.29 0.00 38.83 5.14
1383 1384 8.053776 TCCTAGAAGATGGATAGTGGTACTTA 57.946 38.462 0.00 0.00 0.00 2.24
1404 1405 4.263156 GGTGTGGTACTTGGTGAAATCCTA 60.263 45.833 0.00 0.00 0.00 2.94
1453 1473 3.258372 ACTTGACGCAACTAGGATCTTCA 59.742 43.478 0.00 0.00 0.00 3.02
1485 1505 0.318120 ACCGGTAGTTGTACGTTGGG 59.682 55.000 4.49 0.00 0.00 4.12
1556 1576 3.307906 CCTTGACGTCCACGGGGA 61.308 66.667 14.12 0.00 44.95 4.81
1659 1689 2.034305 GCGACGATGGTAGTGGAAGTAT 59.966 50.000 0.00 0.00 0.00 2.12
1713 1743 1.199789 GAAGCATGCATTGTCGGAACA 59.800 47.619 21.98 0.00 0.00 3.18
1811 1843 2.319136 ACAACTAACGTTCACAGGCA 57.681 45.000 2.82 0.00 0.00 4.75
1874 1906 0.800631 CGCATAGTAGGCATGGCATG 59.199 55.000 22.99 22.99 0.00 4.06
1875 1907 0.321919 CCGCATAGTAGGCATGGCAT 60.322 55.000 22.64 9.36 0.00 4.40
1878 1910 2.831685 TAACCGCATAGTAGGCATGG 57.168 50.000 7.67 3.48 0.00 3.66
1986 2018 1.683011 CGATTTGATCAAGCAGGGGGT 60.683 52.381 8.41 0.00 0.00 4.95
2001 2034 2.210116 ACTCAACAACGTCAGCGATTT 58.790 42.857 0.00 0.00 42.00 2.17
2333 2377 6.970484 ACAACTGCATAAAAGAGATTTTCGT 58.030 32.000 0.00 0.00 32.27 3.85
2409 2453 4.233123 TCCGTTATACGAGTTATGGCAG 57.767 45.455 0.05 0.00 46.05 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.