Multiple sequence alignment - TraesCS4A01G165800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G165800 chr4A 100.000 2396 0 0 1 2396 396755874 396758269 0.000000e+00 4425.0
1 TraesCS4A01G165800 chr4A 96.429 84 3 0 1456 1539 58886789 58886872 3.210000e-29 139.0
2 TraesCS4A01G165800 chr4A 94.595 37 2 0 229 265 396756041 396756077 9.250000e-05 58.4
3 TraesCS4A01G165800 chr4A 94.595 37 2 0 168 204 396756102 396756138 9.250000e-05 58.4
4 TraesCS4A01G165800 chr4A 100.000 28 0 0 1360 1387 57438717 57438744 4.000000e-03 52.8
5 TraesCS4A01G165800 chr4D 92.734 812 25 10 666 1456 134686212 134687010 0.000000e+00 1142.0
6 TraesCS4A01G165800 chr4D 92.736 592 30 7 1538 2120 134687009 134687596 0.000000e+00 843.0
7 TraesCS4A01G165800 chr4D 93.158 190 11 2 288 476 12353063 12353251 6.520000e-71 278.0
8 TraesCS4A01G165800 chr4D 93.571 140 7 2 503 640 134686077 134686216 8.680000e-50 207.0
9 TraesCS4A01G165800 chr4D 94.444 126 6 1 2272 2396 134687678 134687803 2.430000e-45 193.0
10 TraesCS4A01G165800 chr4B 90.465 839 28 20 634 1456 193561928 193562730 0.000000e+00 1059.0
11 TraesCS4A01G165800 chr4B 93.583 561 33 3 1538 2096 193562729 193563288 0.000000e+00 833.0
12 TraesCS4A01G165800 chr4B 93.491 169 9 2 2090 2257 585609121 585609288 1.420000e-62 250.0
13 TraesCS4A01G165800 chr4B 93.082 159 10 1 479 637 193560035 193560192 5.150000e-57 231.0
14 TraesCS4A01G165800 chr4B 93.651 126 7 1 2272 2396 193563318 193563443 1.130000e-43 187.0
15 TraesCS4A01G165800 chr4B 88.462 104 10 2 1448 1550 351875009 351875111 8.990000e-25 124.0
16 TraesCS4A01G165800 chr3A 91.915 470 36 2 8 476 717290288 717289820 0.000000e+00 656.0
17 TraesCS4A01G165800 chr3A 92.090 177 14 0 301 477 522236588 522236412 1.420000e-62 250.0
18 TraesCS4A01G165800 chr3A 97.297 37 1 0 229 265 717290127 717290091 1.990000e-06 63.9
19 TraesCS4A01G165800 chr1A 91.702 470 32 4 8 476 180153750 180153287 0.000000e+00 645.0
20 TraesCS4A01G165800 chr1A 97.297 37 1 0 229 265 180153594 180153558 1.990000e-06 63.9
21 TraesCS4A01G165800 chr3D 92.021 188 12 3 290 476 463088122 463087937 6.570000e-66 261.0
22 TraesCS4A01G165800 chr3D 95.152 165 6 2 2095 2257 2113255 2113419 2.360000e-65 259.0
23 TraesCS4A01G165800 chr3D 90.761 184 12 5 2091 2271 7607391 7607572 8.560000e-60 241.0
24 TraesCS4A01G165800 chr3D 89.894 188 18 1 290 477 463115122 463115308 8.560000e-60 241.0
25 TraesCS4A01G165800 chr3D 85.714 147 17 4 8 152 182319005 182319149 4.130000e-33 152.0
26 TraesCS4A01G165800 chr1D 93.296 179 9 3 2091 2266 330534963 330535141 6.570000e-66 261.0
27 TraesCS4A01G165800 chr2A 93.064 173 10 2 2088 2258 746757161 746756989 3.950000e-63 252.0
28 TraesCS4A01G165800 chr2A 91.477 176 15 0 302 477 187949420 187949595 2.380000e-60 243.0
29 TraesCS4A01G165800 chr3B 93.939 165 8 2 2095 2257 655849585 655849421 5.110000e-62 248.0
30 TraesCS4A01G165800 chr3B 91.713 181 11 4 2080 2257 672963620 672963441 5.110000e-62 248.0
31 TraesCS4A01G165800 chr3B 91.160 181 12 4 2080 2257 673063480 673063301 2.380000e-60 243.0
32 TraesCS4A01G165800 chr3B 90.099 101 9 1 1455 1555 138269219 138269318 1.930000e-26 130.0
33 TraesCS4A01G165800 chr6D 91.620 179 13 2 2095 2271 270689510 270689332 1.840000e-61 246.0
34 TraesCS4A01G165800 chr5D 89.119 193 19 2 285 476 490522129 490521938 3.080000e-59 239.0
35 TraesCS4A01G165800 chr5D 94.318 88 5 0 1455 1542 545281894 545281807 4.150000e-28 135.0
36 TraesCS4A01G165800 chr7A 88.144 194 22 1 283 476 227966965 227967157 1.850000e-56 230.0
37 TraesCS4A01G165800 chr7A 87.958 191 22 1 284 474 148504645 148504456 8.620000e-55 224.0
38 TraesCS4A01G165800 chr7A 95.506 89 4 0 1453 1541 485195203 485195291 2.480000e-30 143.0
39 TraesCS4A01G165800 chr7A 85.211 142 14 5 7 142 148504744 148504884 3.210000e-29 139.0
40 TraesCS4A01G165800 chr5A 88.083 193 22 1 285 476 469278438 469278246 6.660000e-56 228.0
41 TraesCS4A01G165800 chr5A 93.407 91 6 0 1455 1545 687680330 687680420 4.150000e-28 135.0
42 TraesCS4A01G165800 chr5A 92.553 94 6 1 1453 1546 621541155 621541247 1.490000e-27 134.0
43 TraesCS4A01G165800 chr5A 92.473 93 6 1 1454 1546 458337343 458337252 5.370000e-27 132.0
44 TraesCS4A01G165800 chr2D 88.732 142 12 4 3 142 524928961 524928822 1.140000e-38 171.0
45 TraesCS4A01G165800 chr7D 86.452 155 17 4 2 154 588700958 588700806 1.470000e-37 167.0
46 TraesCS4A01G165800 chr5B 89.431 123 10 2 24 143 280430680 280430558 4.130000e-33 152.0
47 TraesCS4A01G165800 chr6B 84.211 152 22 2 4 154 626531946 626532096 1.920000e-31 147.0
48 TraesCS4A01G165800 chr6B 84.564 149 16 7 8 152 188704201 188704056 8.930000e-30 141.0
49 TraesCS4A01G165800 chr6A 92.473 93 6 1 1454 1545 1090283 1090375 5.370000e-27 132.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G165800 chr4A 396755874 396758269 2395 False 1513.933333 4425 96.396667 1 2396 3 chr4A.!!$F3 2395
1 TraesCS4A01G165800 chr4D 134686077 134687803 1726 False 596.250000 1142 93.371250 503 2396 4 chr4D.!!$F2 1893
2 TraesCS4A01G165800 chr4B 193560035 193563443 3408 False 577.500000 1059 92.695250 479 2396 4 chr4B.!!$F3 1917

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
104 105 0.109597 GTTGGTCCAAATGAGCTGCG 60.110 55.0 5.69 0.0 42.12 5.18 F
288 289 0.323999 TGCATCTCCAATGCTGCCTT 60.324 50.0 10.96 0.0 44.79 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1103 2863 1.108727 ATGGCGCAGAGAGAGAGAGG 61.109 60.0 10.83 0.0 0.00 3.69 R
2138 3989 0.901827 ACATCCGTATGTGGCAGTCA 59.098 50.0 0.00 0.0 44.79 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
64 65 6.870971 AAAAATCGAAGTAGCCAACTAACA 57.129 33.333 0.00 0.00 37.50 2.41
65 66 7.448748 AAAAATCGAAGTAGCCAACTAACAT 57.551 32.000 0.00 0.00 37.50 2.71
66 67 7.448748 AAAATCGAAGTAGCCAACTAACATT 57.551 32.000 0.00 0.00 37.50 2.71
67 68 8.556213 AAAATCGAAGTAGCCAACTAACATTA 57.444 30.769 0.00 0.00 37.50 1.90
68 69 7.535489 AATCGAAGTAGCCAACTAACATTAC 57.465 36.000 0.00 0.00 37.50 1.89
69 70 6.028146 TCGAAGTAGCCAACTAACATTACA 57.972 37.500 0.00 0.00 37.50 2.41
70 71 6.457355 TCGAAGTAGCCAACTAACATTACAA 58.543 36.000 0.00 0.00 37.50 2.41
71 72 6.930164 TCGAAGTAGCCAACTAACATTACAAA 59.070 34.615 0.00 0.00 37.50 2.83
72 73 7.604927 TCGAAGTAGCCAACTAACATTACAAAT 59.395 33.333 0.00 0.00 37.50 2.32
73 74 8.875803 CGAAGTAGCCAACTAACATTACAAATA 58.124 33.333 0.00 0.00 37.50 1.40
79 80 8.893727 AGCCAACTAACATTACAAATATCTCAC 58.106 33.333 0.00 0.00 0.00 3.51
80 81 8.673711 GCCAACTAACATTACAAATATCTCACA 58.326 33.333 0.00 0.00 0.00 3.58
88 89 9.897744 ACATTACAAATATCTCACAAACTGTTG 57.102 29.630 0.00 0.00 40.84 3.33
89 90 9.345517 CATTACAAATATCTCACAAACTGTTGG 57.654 33.333 0.00 0.00 39.22 3.77
90 91 6.959639 ACAAATATCTCACAAACTGTTGGT 57.040 33.333 0.00 0.00 39.22 3.67
91 92 6.970484 ACAAATATCTCACAAACTGTTGGTC 58.030 36.000 0.00 0.00 39.22 4.02
92 93 6.016276 ACAAATATCTCACAAACTGTTGGTCC 60.016 38.462 0.00 0.00 39.22 4.46
93 94 3.576078 ATCTCACAAACTGTTGGTCCA 57.424 42.857 0.00 0.00 39.22 4.02
94 95 3.358111 TCTCACAAACTGTTGGTCCAA 57.642 42.857 0.00 0.00 39.22 3.53
95 96 3.691575 TCTCACAAACTGTTGGTCCAAA 58.308 40.909 5.69 0.00 39.22 3.28
96 97 4.277476 TCTCACAAACTGTTGGTCCAAAT 58.723 39.130 5.69 0.00 39.22 2.32
97 98 4.097741 TCTCACAAACTGTTGGTCCAAATG 59.902 41.667 5.69 4.76 39.22 2.32
98 99 4.019858 TCACAAACTGTTGGTCCAAATGA 58.980 39.130 5.69 0.00 39.22 2.57
99 100 4.097741 TCACAAACTGTTGGTCCAAATGAG 59.902 41.667 5.69 5.51 39.22 2.90
100 101 3.181476 ACAAACTGTTGGTCCAAATGAGC 60.181 43.478 5.69 0.00 39.22 4.26
101 102 2.664402 ACTGTTGGTCCAAATGAGCT 57.336 45.000 5.69 0.00 42.12 4.09
102 103 2.233271 ACTGTTGGTCCAAATGAGCTG 58.767 47.619 5.69 0.40 42.12 4.24
103 104 0.961019 TGTTGGTCCAAATGAGCTGC 59.039 50.000 5.69 0.00 42.12 5.25
104 105 0.109597 GTTGGTCCAAATGAGCTGCG 60.110 55.000 5.69 0.00 42.12 5.18
105 106 0.537143 TTGGTCCAAATGAGCTGCGT 60.537 50.000 0.40 0.00 42.12 5.24
106 107 0.537143 TGGTCCAAATGAGCTGCGTT 60.537 50.000 0.00 0.00 42.12 4.84
107 108 0.598065 GGTCCAAATGAGCTGCGTTT 59.402 50.000 0.00 0.00 38.47 3.60
108 109 1.000274 GGTCCAAATGAGCTGCGTTTT 60.000 47.619 0.00 0.00 38.47 2.43
109 110 2.545742 GGTCCAAATGAGCTGCGTTTTT 60.546 45.455 0.00 0.00 38.47 1.94
146 147 7.987750 TGGATACATGTGTGCTTTACTTAAA 57.012 32.000 14.81 0.00 46.17 1.52
147 148 8.574251 TGGATACATGTGTGCTTTACTTAAAT 57.426 30.769 14.81 0.00 46.17 1.40
148 149 9.019656 TGGATACATGTGTGCTTTACTTAAATT 57.980 29.630 14.81 0.00 46.17 1.82
149 150 9.289303 GGATACATGTGTGCTTTACTTAAATTG 57.711 33.333 9.11 0.00 0.00 2.32
150 151 9.840427 GATACATGTGTGCTTTACTTAAATTGT 57.160 29.630 9.11 0.00 0.00 2.71
152 153 8.940768 ACATGTGTGCTTTACTTAAATTGTTT 57.059 26.923 0.00 0.00 0.00 2.83
153 154 9.377312 ACATGTGTGCTTTACTTAAATTGTTTT 57.623 25.926 0.00 0.00 0.00 2.43
154 155 9.848172 CATGTGTGCTTTACTTAAATTGTTTTC 57.152 29.630 0.00 0.00 0.00 2.29
155 156 8.413899 TGTGTGCTTTACTTAAATTGTTTTCC 57.586 30.769 0.00 0.00 0.00 3.13
156 157 7.221067 TGTGTGCTTTACTTAAATTGTTTTCCG 59.779 33.333 0.00 0.00 0.00 4.30
157 158 6.199342 TGTGCTTTACTTAAATTGTTTTCCGC 59.801 34.615 0.00 0.00 0.00 5.54
158 159 6.199342 GTGCTTTACTTAAATTGTTTTCCGCA 59.801 34.615 0.00 0.00 0.00 5.69
159 160 6.757010 TGCTTTACTTAAATTGTTTTCCGCAA 59.243 30.769 0.00 0.00 0.00 4.85
160 161 7.061027 GCTTTACTTAAATTGTTTTCCGCAAC 58.939 34.615 0.00 0.00 0.00 4.17
161 162 7.254151 GCTTTACTTAAATTGTTTTCCGCAACA 60.254 33.333 0.00 0.00 34.76 3.33
162 163 5.959652 ACTTAAATTGTTTTCCGCAACAC 57.040 34.783 0.00 0.00 36.36 3.32
163 164 4.806775 ACTTAAATTGTTTTCCGCAACACC 59.193 37.500 0.00 0.00 36.36 4.16
164 165 2.969628 AATTGTTTTCCGCAACACCA 57.030 40.000 0.00 0.00 36.36 4.17
165 166 3.467374 AATTGTTTTCCGCAACACCAT 57.533 38.095 0.00 0.00 36.36 3.55
166 167 2.215907 TTGTTTTCCGCAACACCATG 57.784 45.000 0.00 0.00 36.36 3.66
167 168 1.393603 TGTTTTCCGCAACACCATGA 58.606 45.000 0.00 0.00 31.48 3.07
168 169 1.751351 TGTTTTCCGCAACACCATGAA 59.249 42.857 0.00 0.00 31.48 2.57
169 170 2.166459 TGTTTTCCGCAACACCATGAAA 59.834 40.909 0.00 0.00 31.48 2.69
170 171 3.181471 TGTTTTCCGCAACACCATGAAAT 60.181 39.130 0.00 0.00 31.48 2.17
171 172 3.296322 TTTCCGCAACACCATGAAATC 57.704 42.857 0.00 0.00 0.00 2.17
172 173 2.198827 TCCGCAACACCATGAAATCT 57.801 45.000 0.00 0.00 0.00 2.40
173 174 2.083774 TCCGCAACACCATGAAATCTC 58.916 47.619 0.00 0.00 0.00 2.75
174 175 1.811965 CCGCAACACCATGAAATCTCA 59.188 47.619 0.00 0.00 35.56 3.27
175 176 2.424601 CCGCAACACCATGAAATCTCAT 59.575 45.455 0.00 0.00 43.40 2.90
196 197 9.399797 TCTCATGTGAAATAACATAAGATTGCT 57.600 29.630 0.00 0.00 38.75 3.91
201 202 9.225436 TGTGAAATAACATAAGATTGCTACACA 57.775 29.630 0.00 0.00 0.00 3.72
240 241 8.899427 TCAAAAATAGCCAAAATTTCATGTGA 57.101 26.923 0.00 0.00 0.00 3.58
241 242 9.334947 TCAAAAATAGCCAAAATTTCATGTGAA 57.665 25.926 0.00 0.00 0.00 3.18
242 243 9.947669 CAAAAATAGCCAAAATTTCATGTGAAA 57.052 25.926 10.29 10.29 46.60 2.69
283 284 4.546829 AAAATTGTGCATCTCCAATGCT 57.453 36.364 10.96 0.00 44.79 3.79
284 285 3.520290 AATTGTGCATCTCCAATGCTG 57.480 42.857 10.96 0.00 44.79 4.41
285 286 0.528924 TTGTGCATCTCCAATGCTGC 59.471 50.000 10.96 0.00 44.79 5.25
286 287 1.317431 TGTGCATCTCCAATGCTGCC 61.317 55.000 10.96 1.09 44.79 4.85
287 288 1.035932 GTGCATCTCCAATGCTGCCT 61.036 55.000 10.96 0.00 44.79 4.75
288 289 0.323999 TGCATCTCCAATGCTGCCTT 60.324 50.000 10.96 0.00 44.79 4.35
289 290 0.822164 GCATCTCCAATGCTGCCTTT 59.178 50.000 0.00 0.00 41.52 3.11
290 291 1.206371 GCATCTCCAATGCTGCCTTTT 59.794 47.619 0.00 0.00 41.52 2.27
291 292 2.354403 GCATCTCCAATGCTGCCTTTTT 60.354 45.455 0.00 0.00 41.52 1.94
311 312 4.752661 TTTTTACCACCGATGCACTTAC 57.247 40.909 0.00 0.00 0.00 2.34
312 313 3.404224 TTTACCACCGATGCACTTACA 57.596 42.857 0.00 0.00 0.00 2.41
313 314 3.404224 TTACCACCGATGCACTTACAA 57.596 42.857 0.00 0.00 0.00 2.41
314 315 2.264005 ACCACCGATGCACTTACAAA 57.736 45.000 0.00 0.00 0.00 2.83
315 316 1.877443 ACCACCGATGCACTTACAAAC 59.123 47.619 0.00 0.00 0.00 2.93
316 317 2.151202 CCACCGATGCACTTACAAACT 58.849 47.619 0.00 0.00 0.00 2.66
317 318 2.095768 CCACCGATGCACTTACAAACTG 60.096 50.000 0.00 0.00 0.00 3.16
318 319 2.095768 CACCGATGCACTTACAAACTGG 60.096 50.000 0.00 0.00 0.00 4.00
319 320 2.224426 ACCGATGCACTTACAAACTGGA 60.224 45.455 0.00 0.00 0.00 3.86
320 321 2.159627 CCGATGCACTTACAAACTGGAC 59.840 50.000 0.00 0.00 0.00 4.02
321 322 3.067106 CGATGCACTTACAAACTGGACT 58.933 45.455 0.00 0.00 0.00 3.85
322 323 3.123621 CGATGCACTTACAAACTGGACTC 59.876 47.826 0.00 0.00 0.00 3.36
323 324 3.552132 TGCACTTACAAACTGGACTCA 57.448 42.857 0.00 0.00 0.00 3.41
324 325 3.202906 TGCACTTACAAACTGGACTCAC 58.797 45.455 0.00 0.00 0.00 3.51
325 326 3.118408 TGCACTTACAAACTGGACTCACT 60.118 43.478 0.00 0.00 0.00 3.41
326 327 3.877508 GCACTTACAAACTGGACTCACTT 59.122 43.478 0.00 0.00 0.00 3.16
327 328 4.260784 GCACTTACAAACTGGACTCACTTG 60.261 45.833 0.00 0.00 0.00 3.16
328 329 4.876107 CACTTACAAACTGGACTCACTTGT 59.124 41.667 0.00 0.00 0.00 3.16
329 330 5.006746 CACTTACAAACTGGACTCACTTGTC 59.993 44.000 0.00 0.00 36.31 3.18
330 331 3.627395 ACAAACTGGACTCACTTGTCA 57.373 42.857 0.00 0.00 38.61 3.58
331 332 3.535561 ACAAACTGGACTCACTTGTCAG 58.464 45.455 0.00 0.00 38.61 3.51
332 333 2.874701 CAAACTGGACTCACTTGTCAGG 59.125 50.000 0.00 0.00 38.61 3.86
333 334 2.088104 ACTGGACTCACTTGTCAGGA 57.912 50.000 0.00 0.00 38.61 3.86
334 335 2.398588 ACTGGACTCACTTGTCAGGAA 58.601 47.619 0.00 0.00 38.61 3.36
335 336 2.975489 ACTGGACTCACTTGTCAGGAAT 59.025 45.455 0.00 0.00 38.61 3.01
336 337 3.007398 ACTGGACTCACTTGTCAGGAATC 59.993 47.826 0.00 0.00 38.61 2.52
337 338 2.972021 TGGACTCACTTGTCAGGAATCA 59.028 45.455 0.00 0.00 38.61 2.57
338 339 3.584406 TGGACTCACTTGTCAGGAATCAT 59.416 43.478 0.00 0.00 38.61 2.45
339 340 3.937706 GGACTCACTTGTCAGGAATCATG 59.062 47.826 0.00 0.00 38.61 3.07
340 341 4.564406 GGACTCACTTGTCAGGAATCATGT 60.564 45.833 0.00 0.00 38.61 3.21
341 342 4.573900 ACTCACTTGTCAGGAATCATGTC 58.426 43.478 0.00 0.00 0.00 3.06
342 343 4.040829 ACTCACTTGTCAGGAATCATGTCA 59.959 41.667 0.00 0.00 0.00 3.58
343 344 4.971939 TCACTTGTCAGGAATCATGTCAA 58.028 39.130 7.27 7.27 0.00 3.18
344 345 4.756642 TCACTTGTCAGGAATCATGTCAAC 59.243 41.667 3.72 0.00 0.00 3.18
345 346 4.074970 ACTTGTCAGGAATCATGTCAACC 58.925 43.478 3.72 0.00 0.00 3.77
346 347 3.071874 TGTCAGGAATCATGTCAACCC 57.928 47.619 0.00 0.00 0.00 4.11
347 348 2.374839 TGTCAGGAATCATGTCAACCCA 59.625 45.455 0.00 0.00 0.00 4.51
348 349 3.010472 TGTCAGGAATCATGTCAACCCAT 59.990 43.478 0.00 0.00 0.00 4.00
349 350 3.629398 GTCAGGAATCATGTCAACCCATC 59.371 47.826 0.00 0.00 0.00 3.51
350 351 3.524789 TCAGGAATCATGTCAACCCATCT 59.475 43.478 0.00 0.00 0.00 2.90
351 352 4.721274 TCAGGAATCATGTCAACCCATCTA 59.279 41.667 0.00 0.00 0.00 1.98
352 353 5.191522 TCAGGAATCATGTCAACCCATCTAA 59.808 40.000 0.00 0.00 0.00 2.10
353 354 5.887598 CAGGAATCATGTCAACCCATCTAAA 59.112 40.000 0.00 0.00 0.00 1.85
354 355 6.548622 CAGGAATCATGTCAACCCATCTAAAT 59.451 38.462 0.00 0.00 0.00 1.40
355 356 6.548622 AGGAATCATGTCAACCCATCTAAATG 59.451 38.462 0.00 0.00 0.00 2.32
356 357 6.547141 GGAATCATGTCAACCCATCTAAATGA 59.453 38.462 0.00 0.00 34.61 2.57
357 358 7.232127 GGAATCATGTCAACCCATCTAAATGAT 59.768 37.037 0.00 0.00 35.57 2.45
374 375 8.150945 TCTAAATGATGGATTAGACCTAACTGC 58.849 37.037 0.00 0.00 34.18 4.40
375 376 5.894298 ATGATGGATTAGACCTAACTGCA 57.106 39.130 0.00 0.00 0.00 4.41
376 377 5.692115 TGATGGATTAGACCTAACTGCAA 57.308 39.130 0.00 0.00 0.00 4.08
377 378 6.252599 TGATGGATTAGACCTAACTGCAAT 57.747 37.500 0.00 0.00 0.00 3.56
378 379 6.057533 TGATGGATTAGACCTAACTGCAATG 58.942 40.000 0.00 0.00 0.00 2.82
379 380 5.692115 TGGATTAGACCTAACTGCAATGA 57.308 39.130 0.00 0.00 0.00 2.57
380 381 6.061022 TGGATTAGACCTAACTGCAATGAA 57.939 37.500 0.00 0.00 0.00 2.57
381 382 6.662755 TGGATTAGACCTAACTGCAATGAAT 58.337 36.000 0.00 0.00 0.00 2.57
382 383 7.118723 TGGATTAGACCTAACTGCAATGAATT 58.881 34.615 0.00 0.00 0.00 2.17
383 384 8.271458 TGGATTAGACCTAACTGCAATGAATTA 58.729 33.333 0.00 0.00 0.00 1.40
384 385 8.560374 GGATTAGACCTAACTGCAATGAATTAC 58.440 37.037 0.00 0.00 0.00 1.89
385 386 7.859325 TTAGACCTAACTGCAATGAATTACC 57.141 36.000 0.00 0.00 0.00 2.85
386 387 5.193679 AGACCTAACTGCAATGAATTACCC 58.806 41.667 0.00 0.00 0.00 3.69
387 388 4.278310 ACCTAACTGCAATGAATTACCCC 58.722 43.478 0.00 0.00 0.00 4.95
388 389 4.264172 ACCTAACTGCAATGAATTACCCCA 60.264 41.667 0.00 0.00 0.00 4.96
389 390 4.709397 CCTAACTGCAATGAATTACCCCAA 59.291 41.667 0.00 0.00 0.00 4.12
390 391 5.363580 CCTAACTGCAATGAATTACCCCAAT 59.636 40.000 0.00 0.00 0.00 3.16
391 392 6.549364 CCTAACTGCAATGAATTACCCCAATA 59.451 38.462 0.00 0.00 0.00 1.90
392 393 7.233348 CCTAACTGCAATGAATTACCCCAATAT 59.767 37.037 0.00 0.00 0.00 1.28
393 394 6.409524 ACTGCAATGAATTACCCCAATATG 57.590 37.500 0.00 0.00 0.00 1.78
394 395 5.898972 ACTGCAATGAATTACCCCAATATGT 59.101 36.000 0.00 0.00 0.00 2.29
395 396 6.159299 TGCAATGAATTACCCCAATATGTG 57.841 37.500 0.00 0.00 0.00 3.21
409 410 6.645700 CCAATATGTGGTGTTTTATGCAAC 57.354 37.500 0.00 0.00 43.20 4.17
410 411 6.162079 CCAATATGTGGTGTTTTATGCAACA 58.838 36.000 0.00 0.00 43.20 3.33
411 412 6.648310 CCAATATGTGGTGTTTTATGCAACAA 59.352 34.615 0.00 0.00 43.20 2.83
412 413 7.172190 CCAATATGTGGTGTTTTATGCAACAAA 59.828 33.333 0.00 0.00 43.20 2.83
413 414 5.982465 ATGTGGTGTTTTATGCAACAAAC 57.018 34.783 14.36 14.36 38.40 2.93
414 415 5.078411 TGTGGTGTTTTATGCAACAAACT 57.922 34.783 19.41 0.00 38.40 2.66
415 416 5.482908 TGTGGTGTTTTATGCAACAAACTT 58.517 33.333 19.41 0.00 38.40 2.66
416 417 5.349817 TGTGGTGTTTTATGCAACAAACTTG 59.650 36.000 19.41 0.00 38.40 3.16
417 418 5.350091 GTGGTGTTTTATGCAACAAACTTGT 59.650 36.000 19.41 0.00 44.72 3.16
418 419 6.531948 GTGGTGTTTTATGCAACAAACTTGTA 59.468 34.615 19.41 2.99 41.31 2.41
419 420 7.063544 GTGGTGTTTTATGCAACAAACTTGTAA 59.936 33.333 19.41 2.71 41.31 2.41
420 421 7.602644 TGGTGTTTTATGCAACAAACTTGTAAA 59.397 29.630 19.41 3.27 41.31 2.01
421 422 8.113675 GGTGTTTTATGCAACAAACTTGTAAAG 58.886 33.333 19.41 0.00 43.40 1.85
422 423 8.652463 GTGTTTTATGCAACAAACTTGTAAAGT 58.348 29.630 19.41 0.00 44.95 2.66
423 424 9.856488 TGTTTTATGCAACAAACTTGTAAAGTA 57.144 25.926 19.41 0.51 43.93 2.24
438 439 8.502161 CTTGTAAAGTAGGTATTTTGTGCAAC 57.498 34.615 0.00 0.00 39.70 4.17
439 440 8.132362 CTTGTAAAGTAGGTATTTTGTGCAACA 58.868 33.333 0.00 0.00 42.57 3.33
453 454 2.374184 TGCAACACTAGCACCAAAAGT 58.626 42.857 0.00 0.00 37.02 2.66
454 455 3.546724 TGCAACACTAGCACCAAAAGTA 58.453 40.909 0.00 0.00 37.02 2.24
455 456 3.563808 TGCAACACTAGCACCAAAAGTAG 59.436 43.478 0.00 0.00 37.02 2.57
456 457 3.058224 GCAACACTAGCACCAAAAGTAGG 60.058 47.826 0.00 0.00 0.00 3.18
457 458 4.134563 CAACACTAGCACCAAAAGTAGGT 58.865 43.478 0.00 0.00 40.85 3.08
466 467 2.429250 ACCAAAAGTAGGTGGTTTGTGC 59.571 45.455 0.00 0.00 46.17 4.57
467 468 2.428890 CCAAAAGTAGGTGGTTTGTGCA 59.571 45.455 0.00 0.00 31.66 4.57
468 469 3.118956 CCAAAAGTAGGTGGTTTGTGCAA 60.119 43.478 0.00 0.00 31.66 4.08
469 470 4.442753 CCAAAAGTAGGTGGTTTGTGCAAT 60.443 41.667 0.00 0.00 31.66 3.56
470 471 5.115480 CAAAAGTAGGTGGTTTGTGCAATT 58.885 37.500 0.00 0.00 0.00 2.32
471 472 5.351948 AAAGTAGGTGGTTTGTGCAATTT 57.648 34.783 0.00 0.00 0.00 1.82
472 473 4.584327 AGTAGGTGGTTTGTGCAATTTC 57.416 40.909 0.00 0.00 0.00 2.17
473 474 2.908688 AGGTGGTTTGTGCAATTTCC 57.091 45.000 0.00 0.00 0.00 3.13
474 475 2.397597 AGGTGGTTTGTGCAATTTCCT 58.602 42.857 0.00 0.00 0.00 3.36
475 476 2.365293 AGGTGGTTTGTGCAATTTCCTC 59.635 45.455 0.00 0.00 0.00 3.71
476 477 2.393764 GTGGTTTGTGCAATTTCCTCG 58.606 47.619 0.00 0.00 0.00 4.63
477 478 1.339610 TGGTTTGTGCAATTTCCTCGG 59.660 47.619 0.00 0.00 0.00 4.63
495 496 4.987912 CCTCGGCTTATTTCTCAAGAGATC 59.012 45.833 0.00 0.00 37.29 2.75
497 498 3.738282 CGGCTTATTTCTCAAGAGATCGG 59.262 47.826 0.00 0.00 37.29 4.18
498 499 4.499865 CGGCTTATTTCTCAAGAGATCGGA 60.500 45.833 0.00 0.00 37.29 4.55
499 500 5.546526 GGCTTATTTCTCAAGAGATCGGAT 58.453 41.667 0.00 0.00 37.29 4.18
515 516 6.414732 AGATCGGATGGTTGAAATAGAACAA 58.585 36.000 0.00 0.00 0.00 2.83
686 2428 9.934190 CTTTTAGTACTAGTCGTAATTCTCTCC 57.066 37.037 0.00 0.00 0.00 3.71
755 2504 5.191426 ACTAGTCGTACCTTTGATCTAGCA 58.809 41.667 0.00 0.00 0.00 3.49
756 2505 5.651139 ACTAGTCGTACCTTTGATCTAGCAA 59.349 40.000 0.00 0.00 0.00 3.91
757 2506 4.745649 AGTCGTACCTTTGATCTAGCAAC 58.254 43.478 0.00 0.00 0.00 4.17
758 2507 4.463186 AGTCGTACCTTTGATCTAGCAACT 59.537 41.667 0.00 0.00 0.00 3.16
759 2508 5.651139 AGTCGTACCTTTGATCTAGCAACTA 59.349 40.000 0.00 0.00 0.00 2.24
809 2563 1.902508 TCTTGTGATCTTCTCCCGCTT 59.097 47.619 0.00 0.00 0.00 4.68
891 2650 1.572085 CTCTCGCAGGTTGGTTGCAG 61.572 60.000 0.00 0.00 41.59 4.41
907 2666 2.477245 TGCAGGAGGAGCCACTATAAA 58.523 47.619 0.00 0.00 40.02 1.40
938 2698 3.011821 ACTCCTACCACATCTCCTGAGAA 59.988 47.826 0.20 0.00 41.36 2.87
939 2699 4.026744 CTCCTACCACATCTCCTGAGAAA 58.973 47.826 0.20 0.00 41.36 2.52
940 2700 3.769844 TCCTACCACATCTCCTGAGAAAC 59.230 47.826 0.20 0.00 41.36 2.78
941 2701 3.118592 CCTACCACATCTCCTGAGAAACC 60.119 52.174 0.20 0.00 41.36 3.27
942 2702 1.630878 ACCACATCTCCTGAGAAACCC 59.369 52.381 0.20 0.00 41.36 4.11
982 2742 4.221703 ACGAGAGCTAATATCCATCCTTGG 59.778 45.833 0.00 0.00 45.15 3.61
1068 2828 2.084546 GCCGTCTTCTTACAAGGCAAT 58.915 47.619 0.00 0.00 43.65 3.56
1089 2849 2.238646 TCCTACATTGGTTTCAGCGGAT 59.761 45.455 0.00 0.00 0.00 4.18
1103 2863 1.068741 AGCGGATGGTTCGTAATCTCC 59.931 52.381 0.00 0.00 0.00 3.71
1208 2971 8.741101 ACTTACTGATCTACTAGTACGTATCG 57.259 38.462 0.00 3.11 32.29 2.92
1229 2992 3.502595 CGTCTGTGAACTTCAGAGGAGTA 59.497 47.826 14.32 0.00 45.03 2.59
1312 3075 3.612247 GAGGCCAAGCTCTTCCGCA 62.612 63.158 5.01 0.00 0.00 5.69
1320 3083 2.125912 CTCTTCCGCACCCGTCTG 60.126 66.667 0.00 0.00 0.00 3.51
1438 3201 2.549611 ATTTGCTCGCTCGCTCGTCT 62.550 55.000 0.00 0.00 0.00 4.18
1456 3219 4.818546 TCGTCTAGTAGGCATTACCACTAC 59.181 45.833 2.09 0.00 43.14 2.73
1457 3220 4.820716 CGTCTAGTAGGCATTACCACTACT 59.179 45.833 2.09 8.43 46.51 2.57
1458 3221 5.049543 CGTCTAGTAGGCATTACCACTACTC 60.050 48.000 6.84 0.00 44.46 2.59
1459 3222 5.241285 GTCTAGTAGGCATTACCACTACTCC 59.759 48.000 6.84 0.00 44.46 3.85
1460 3223 3.306613 AGTAGGCATTACCACTACTCCC 58.693 50.000 0.00 0.00 42.65 4.30
1461 3224 2.570386 AGGCATTACCACTACTCCCT 57.430 50.000 0.00 0.00 43.14 4.20
1462 3225 2.399580 AGGCATTACCACTACTCCCTC 58.600 52.381 0.00 0.00 43.14 4.30
1463 3226 1.416772 GGCATTACCACTACTCCCTCC 59.583 57.143 0.00 0.00 38.86 4.30
1464 3227 1.068741 GCATTACCACTACTCCCTCCG 59.931 57.143 0.00 0.00 0.00 4.63
1465 3228 2.385803 CATTACCACTACTCCCTCCGT 58.614 52.381 0.00 0.00 0.00 4.69
1466 3229 2.610438 TTACCACTACTCCCTCCGTT 57.390 50.000 0.00 0.00 0.00 4.44
1467 3230 2.134789 TACCACTACTCCCTCCGTTC 57.865 55.000 0.00 0.00 0.00 3.95
1468 3231 0.614134 ACCACTACTCCCTCCGTTCC 60.614 60.000 0.00 0.00 0.00 3.62
1469 3232 0.613853 CCACTACTCCCTCCGTTCCA 60.614 60.000 0.00 0.00 0.00 3.53
1470 3233 1.486211 CACTACTCCCTCCGTTCCAT 58.514 55.000 0.00 0.00 0.00 3.41
1471 3234 2.662866 CACTACTCCCTCCGTTCCATA 58.337 52.381 0.00 0.00 0.00 2.74
1472 3235 3.028850 CACTACTCCCTCCGTTCCATAA 58.971 50.000 0.00 0.00 0.00 1.90
1473 3236 3.641906 CACTACTCCCTCCGTTCCATAAT 59.358 47.826 0.00 0.00 0.00 1.28
1474 3237 4.831155 CACTACTCCCTCCGTTCCATAATA 59.169 45.833 0.00 0.00 0.00 0.98
1475 3238 5.480772 CACTACTCCCTCCGTTCCATAATAT 59.519 44.000 0.00 0.00 0.00 1.28
1476 3239 6.662234 CACTACTCCCTCCGTTCCATAATATA 59.338 42.308 0.00 0.00 0.00 0.86
1477 3240 7.177921 CACTACTCCCTCCGTTCCATAATATAA 59.822 40.741 0.00 0.00 0.00 0.98
1478 3241 6.607004 ACTCCCTCCGTTCCATAATATAAG 57.393 41.667 0.00 0.00 0.00 1.73
1479 3242 6.320518 ACTCCCTCCGTTCCATAATATAAGA 58.679 40.000 0.00 0.00 0.00 2.10
1480 3243 6.437793 ACTCCCTCCGTTCCATAATATAAGAG 59.562 42.308 0.00 0.00 0.00 2.85
1481 3244 5.187186 TCCCTCCGTTCCATAATATAAGAGC 59.813 44.000 0.00 0.00 0.00 4.09
1482 3245 5.103000 CCTCCGTTCCATAATATAAGAGCG 58.897 45.833 3.06 3.06 33.46 5.03
1483 3246 5.336531 CCTCCGTTCCATAATATAAGAGCGT 60.337 44.000 7.53 0.00 32.01 5.07
1484 3247 6.092955 TCCGTTCCATAATATAAGAGCGTT 57.907 37.500 7.53 0.00 32.01 4.84
1485 3248 6.518493 TCCGTTCCATAATATAAGAGCGTTT 58.482 36.000 7.53 0.00 32.01 3.60
1486 3249 6.987992 TCCGTTCCATAATATAAGAGCGTTTT 59.012 34.615 7.53 0.00 32.01 2.43
1487 3250 7.496591 TCCGTTCCATAATATAAGAGCGTTTTT 59.503 33.333 7.53 0.00 32.01 1.94
1488 3251 7.586300 CCGTTCCATAATATAAGAGCGTTTTTG 59.414 37.037 7.53 0.00 32.01 2.44
1489 3252 7.586300 CGTTCCATAATATAAGAGCGTTTTTGG 59.414 37.037 0.00 0.00 0.00 3.28
1490 3253 6.966021 TCCATAATATAAGAGCGTTTTTGGC 58.034 36.000 0.00 0.00 0.00 4.52
1491 3254 6.544197 TCCATAATATAAGAGCGTTTTTGGCA 59.456 34.615 0.00 0.00 0.00 4.92
1492 3255 6.636850 CCATAATATAAGAGCGTTTTTGGCAC 59.363 38.462 0.00 0.00 0.00 5.01
1493 3256 5.897377 AATATAAGAGCGTTTTTGGCACT 57.103 34.783 0.00 0.00 32.60 4.40
1494 3257 6.995511 AATATAAGAGCGTTTTTGGCACTA 57.004 33.333 0.00 0.00 31.01 2.74
1495 3258 4.680171 ATAAGAGCGTTTTTGGCACTAC 57.320 40.909 0.00 0.00 31.01 2.73
1496 3259 1.961793 AGAGCGTTTTTGGCACTACA 58.038 45.000 0.00 0.00 29.39 2.74
1497 3260 1.602377 AGAGCGTTTTTGGCACTACAC 59.398 47.619 0.00 0.00 29.39 2.90
1498 3261 1.602377 GAGCGTTTTTGGCACTACACT 59.398 47.619 0.00 0.00 0.00 3.55
1499 3262 2.803956 GAGCGTTTTTGGCACTACACTA 59.196 45.455 0.00 0.00 0.00 2.74
1500 3263 2.546789 AGCGTTTTTGGCACTACACTAC 59.453 45.455 0.00 0.00 0.00 2.73
1501 3264 2.546789 GCGTTTTTGGCACTACACTACT 59.453 45.455 0.00 0.00 0.00 2.57
1502 3265 3.606153 GCGTTTTTGGCACTACACTACTG 60.606 47.826 0.00 0.00 0.00 2.74
1503 3266 3.558418 CGTTTTTGGCACTACACTACTGT 59.442 43.478 0.00 0.00 0.00 3.55
1504 3267 4.746115 CGTTTTTGGCACTACACTACTGTA 59.254 41.667 0.00 0.00 0.00 2.74
1505 3268 5.234757 CGTTTTTGGCACTACACTACTGTAA 59.765 40.000 0.00 0.00 32.24 2.41
1506 3269 6.238157 CGTTTTTGGCACTACACTACTGTAAA 60.238 38.462 0.00 0.00 32.24 2.01
1507 3270 7.474190 GTTTTTGGCACTACACTACTGTAAAA 58.526 34.615 0.00 0.00 32.24 1.52
1508 3271 7.627298 TTTTGGCACTACACTACTGTAAAAA 57.373 32.000 0.00 0.00 32.24 1.94
1551 3314 6.660722 ACAGAGCGAGTAGTTATTTATCTCG 58.339 40.000 8.23 8.23 46.76 4.04
1705 3477 8.020244 GTCTCAGTTTGGAGATTGAATTCTTTC 58.980 37.037 7.05 3.74 45.08 2.62
1706 3478 7.941238 TCTCAGTTTGGAGATTGAATTCTTTCT 59.059 33.333 7.05 8.54 38.95 2.52
1707 3479 8.103948 TCAGTTTGGAGATTGAATTCTTTCTC 57.896 34.615 20.85 20.85 35.05 2.87
1766 3538 6.523201 CCGTGTAATGTCTTGCTTCAATTAAC 59.477 38.462 0.00 0.00 0.00 2.01
1928 3702 8.116753 CCTACGTGTCACTTCATCATAAAAATC 58.883 37.037 0.00 0.00 0.00 2.17
1995 3769 1.901159 CATGCCCTTGGAATCCAACAA 59.099 47.619 11.23 0.00 38.75 2.83
2096 3947 3.609644 CGGAGATCGACCATGCTACTTAC 60.610 52.174 11.37 0.00 42.43 2.34
2097 3948 3.570550 GGAGATCGACCATGCTACTTACT 59.429 47.826 7.03 0.00 0.00 2.24
2098 3949 4.320641 GGAGATCGACCATGCTACTTACTC 60.321 50.000 7.03 0.00 0.00 2.59
2099 3950 3.570550 AGATCGACCATGCTACTTACTCC 59.429 47.826 0.00 0.00 0.00 3.85
2100 3951 2.029623 TCGACCATGCTACTTACTCCC 58.970 52.381 0.00 0.00 0.00 4.30
2101 3952 2.032620 CGACCATGCTACTTACTCCCT 58.967 52.381 0.00 0.00 0.00 4.20
2102 3953 2.034812 CGACCATGCTACTTACTCCCTC 59.965 54.545 0.00 0.00 0.00 4.30
2103 3954 2.365941 GACCATGCTACTTACTCCCTCC 59.634 54.545 0.00 0.00 0.00 4.30
2104 3955 1.341531 CCATGCTACTTACTCCCTCCG 59.658 57.143 0.00 0.00 0.00 4.63
2105 3956 2.032620 CATGCTACTTACTCCCTCCGT 58.967 52.381 0.00 0.00 0.00 4.69
2106 3957 2.226962 TGCTACTTACTCCCTCCGTT 57.773 50.000 0.00 0.00 0.00 4.44
2107 3958 2.532843 TGCTACTTACTCCCTCCGTTT 58.467 47.619 0.00 0.00 0.00 3.60
2108 3959 2.494870 TGCTACTTACTCCCTCCGTTTC 59.505 50.000 0.00 0.00 0.00 2.78
2109 3960 2.759535 GCTACTTACTCCCTCCGTTTCT 59.240 50.000 0.00 0.00 0.00 2.52
2110 3961 3.950395 GCTACTTACTCCCTCCGTTTCTA 59.050 47.826 0.00 0.00 0.00 2.10
2111 3962 4.400567 GCTACTTACTCCCTCCGTTTCTAA 59.599 45.833 0.00 0.00 0.00 2.10
2112 3963 5.105595 GCTACTTACTCCCTCCGTTTCTAAA 60.106 44.000 0.00 0.00 0.00 1.85
2113 3964 6.406737 GCTACTTACTCCCTCCGTTTCTAAAT 60.407 42.308 0.00 0.00 0.00 1.40
2114 3965 7.201857 GCTACTTACTCCCTCCGTTTCTAAATA 60.202 40.741 0.00 0.00 0.00 1.40
2115 3966 7.672122 ACTTACTCCCTCCGTTTCTAAATAT 57.328 36.000 0.00 0.00 0.00 1.28
2116 3967 8.087303 ACTTACTCCCTCCGTTTCTAAATATT 57.913 34.615 0.00 0.00 0.00 1.28
2117 3968 8.546322 ACTTACTCCCTCCGTTTCTAAATATTT 58.454 33.333 5.89 5.89 0.00 1.40
2118 3969 8.726870 TTACTCCCTCCGTTTCTAAATATTTG 57.273 34.615 11.05 1.65 0.00 2.32
2119 3970 6.718294 ACTCCCTCCGTTTCTAAATATTTGT 58.282 36.000 11.05 0.00 0.00 2.83
2120 3971 7.173032 ACTCCCTCCGTTTCTAAATATTTGTT 58.827 34.615 11.05 0.00 0.00 2.83
2121 3972 7.668469 ACTCCCTCCGTTTCTAAATATTTGTTT 59.332 33.333 11.05 0.00 0.00 2.83
2122 3973 8.411991 TCCCTCCGTTTCTAAATATTTGTTTT 57.588 30.769 11.05 0.00 0.00 2.43
2123 3974 8.862085 TCCCTCCGTTTCTAAATATTTGTTTTT 58.138 29.630 11.05 0.00 0.00 1.94
2146 3997 7.523293 TTTTAGAGATTTCAAATGACTGCCA 57.477 32.000 0.00 0.00 0.00 4.92
2147 3998 6.500684 TTAGAGATTTCAAATGACTGCCAC 57.499 37.500 0.00 0.00 0.00 5.01
2148 3999 4.401022 AGAGATTTCAAATGACTGCCACA 58.599 39.130 0.00 0.00 0.00 4.17
2149 4000 5.014858 AGAGATTTCAAATGACTGCCACAT 58.985 37.500 0.00 0.00 0.00 3.21
2150 4001 6.182627 AGAGATTTCAAATGACTGCCACATA 58.817 36.000 0.00 0.00 0.00 2.29
2151 4002 6.094603 AGAGATTTCAAATGACTGCCACATAC 59.905 38.462 0.00 0.00 0.00 2.39
2152 4003 4.418013 TTTCAAATGACTGCCACATACG 57.582 40.909 0.00 0.00 0.00 3.06
2153 4004 2.355197 TCAAATGACTGCCACATACGG 58.645 47.619 0.00 0.00 0.00 4.02
2154 4005 2.027653 TCAAATGACTGCCACATACGGA 60.028 45.455 0.00 0.00 0.00 4.69
2155 4006 2.945008 CAAATGACTGCCACATACGGAT 59.055 45.455 0.00 0.00 0.00 4.18
2156 4007 2.245159 ATGACTGCCACATACGGATG 57.755 50.000 5.94 5.94 39.16 3.51
2158 4009 2.104170 TGACTGCCACATACGGATGTA 58.896 47.619 14.23 0.00 44.82 2.29
2159 4010 2.698274 TGACTGCCACATACGGATGTAT 59.302 45.455 14.23 0.00 44.82 2.29
2160 4011 3.892588 TGACTGCCACATACGGATGTATA 59.107 43.478 14.23 1.74 44.82 1.47
2161 4012 4.526650 TGACTGCCACATACGGATGTATAT 59.473 41.667 14.23 0.00 44.82 0.86
2162 4013 5.712917 TGACTGCCACATACGGATGTATATA 59.287 40.000 14.23 0.00 44.82 0.86
2163 4014 6.127730 TGACTGCCACATACGGATGTATATAG 60.128 42.308 14.23 11.73 44.82 1.31
2164 4015 5.949952 ACTGCCACATACGGATGTATATAGA 59.050 40.000 14.23 0.00 44.82 1.98
2165 4016 6.127703 ACTGCCACATACGGATGTATATAGAC 60.128 42.308 14.23 0.00 44.82 2.59
2166 4017 5.712917 TGCCACATACGGATGTATATAGACA 59.287 40.000 14.23 2.07 44.82 3.41
2167 4018 6.379988 TGCCACATACGGATGTATATAGACAT 59.620 38.462 14.23 12.70 44.82 3.06
2168 4019 7.558444 TGCCACATACGGATGTATATAGACATA 59.442 37.037 14.23 0.00 44.82 2.29
2169 4020 8.577296 GCCACATACGGATGTATATAGACATAT 58.423 37.037 14.23 5.08 44.82 1.78
2199 4050 7.138692 AGTGTAGATTCACTCATTTTGCTTC 57.861 36.000 0.00 0.00 44.07 3.86
2200 4051 6.017933 GTGTAGATTCACTCATTTTGCTTCG 58.982 40.000 0.00 0.00 35.68 3.79
2201 4052 4.691860 AGATTCACTCATTTTGCTTCGG 57.308 40.909 0.00 0.00 0.00 4.30
2202 4053 4.326826 AGATTCACTCATTTTGCTTCGGA 58.673 39.130 0.00 0.00 0.00 4.55
2203 4054 4.946157 AGATTCACTCATTTTGCTTCGGAT 59.054 37.500 0.00 0.00 0.00 4.18
2204 4055 4.424061 TTCACTCATTTTGCTTCGGATG 57.576 40.909 0.00 0.00 0.00 3.51
2205 4056 3.411446 TCACTCATTTTGCTTCGGATGT 58.589 40.909 0.00 0.00 0.00 3.06
2206 4057 3.189080 TCACTCATTTTGCTTCGGATGTG 59.811 43.478 0.00 0.00 0.00 3.21
2207 4058 3.058016 CACTCATTTTGCTTCGGATGTGT 60.058 43.478 0.00 0.00 0.00 3.72
2208 4059 3.189287 ACTCATTTTGCTTCGGATGTGTC 59.811 43.478 0.00 0.00 0.00 3.67
2209 4060 3.145286 TCATTTTGCTTCGGATGTGTCA 58.855 40.909 0.00 0.00 0.00 3.58
2210 4061 3.058293 TCATTTTGCTTCGGATGTGTCAC 60.058 43.478 0.00 0.00 0.00 3.67
2211 4062 2.254546 TTTGCTTCGGATGTGTCACT 57.745 45.000 4.27 0.00 0.00 3.41
2212 4063 2.254546 TTGCTTCGGATGTGTCACTT 57.745 45.000 4.27 0.00 0.00 3.16
2213 4064 1.511850 TGCTTCGGATGTGTCACTTG 58.488 50.000 4.27 0.00 0.00 3.16
2214 4065 1.202639 TGCTTCGGATGTGTCACTTGT 60.203 47.619 4.27 0.00 0.00 3.16
2215 4066 1.873591 GCTTCGGATGTGTCACTTGTT 59.126 47.619 4.27 0.00 0.00 2.83
2216 4067 2.349817 GCTTCGGATGTGTCACTTGTTG 60.350 50.000 4.27 0.00 0.00 3.33
2217 4068 2.900716 TCGGATGTGTCACTTGTTGA 57.099 45.000 4.27 0.00 0.00 3.18
2218 4069 3.186702 TCGGATGTGTCACTTGTTGAA 57.813 42.857 4.27 0.00 35.39 2.69
2219 4070 3.536570 TCGGATGTGTCACTTGTTGAAA 58.463 40.909 4.27 0.00 35.39 2.69
2220 4071 4.133820 TCGGATGTGTCACTTGTTGAAAT 58.866 39.130 4.27 0.00 35.39 2.17
2221 4072 4.578516 TCGGATGTGTCACTTGTTGAAATT 59.421 37.500 4.27 0.00 35.39 1.82
2222 4073 5.067153 TCGGATGTGTCACTTGTTGAAATTT 59.933 36.000 4.27 0.00 35.39 1.82
2223 4074 5.399301 CGGATGTGTCACTTGTTGAAATTTC 59.601 40.000 11.41 11.41 35.39 2.17
2224 4075 6.507023 GGATGTGTCACTTGTTGAAATTTCT 58.493 36.000 18.64 0.00 35.39 2.52
2225 4076 7.519809 CGGATGTGTCACTTGTTGAAATTTCTA 60.520 37.037 18.64 8.95 35.39 2.10
2226 4077 8.134895 GGATGTGTCACTTGTTGAAATTTCTAA 58.865 33.333 18.64 8.91 35.39 2.10
2227 4078 9.515020 GATGTGTCACTTGTTGAAATTTCTAAA 57.485 29.630 18.64 4.07 35.39 1.85
2228 4079 9.868277 ATGTGTCACTTGTTGAAATTTCTAAAA 57.132 25.926 18.64 11.65 35.39 1.52
2229 4080 9.698309 TGTGTCACTTGTTGAAATTTCTAAAAA 57.302 25.926 18.64 11.26 35.39 1.94
2251 4102 9.908152 AAAAAGACAAATATTTAAGAACGGAGG 57.092 29.630 0.00 0.00 0.00 4.30
2252 4103 8.857694 AAAGACAAATATTTAAGAACGGAGGA 57.142 30.769 0.00 0.00 0.00 3.71
2253 4104 8.857694 AAGACAAATATTTAAGAACGGAGGAA 57.142 30.769 0.00 0.00 0.00 3.36
2254 4105 8.494016 AGACAAATATTTAAGAACGGAGGAAG 57.506 34.615 0.00 0.00 0.00 3.46
2255 4106 8.101419 AGACAAATATTTAAGAACGGAGGAAGT 58.899 33.333 0.00 0.00 0.00 3.01
2256 4107 9.374838 GACAAATATTTAAGAACGGAGGAAGTA 57.625 33.333 0.00 0.00 0.00 2.24
2257 4108 9.159364 ACAAATATTTAAGAACGGAGGAAGTAC 57.841 33.333 0.00 0.00 0.00 2.73
2258 4109 9.379791 CAAATATTTAAGAACGGAGGAAGTACT 57.620 33.333 0.00 0.00 0.00 2.73
2259 4110 8.943909 AATATTTAAGAACGGAGGAAGTACTG 57.056 34.615 0.00 0.00 0.00 2.74
2290 4160 3.071874 ACCACCACATACAACAGATGG 57.928 47.619 0.00 0.00 36.46 3.51
2322 4192 6.581712 ACTTAAGGAAATTTTGCACACACAT 58.418 32.000 7.53 0.00 0.00 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 6.870971 TGTTAGTTGGCTACTTCGATTTTT 57.129 33.333 6.96 0.00 38.33 1.94
42 43 7.448748 AATGTTAGTTGGCTACTTCGATTTT 57.551 32.000 6.96 0.00 38.33 1.82
43 44 7.604927 TGTAATGTTAGTTGGCTACTTCGATTT 59.395 33.333 6.96 0.00 38.33 2.17
44 45 7.101054 TGTAATGTTAGTTGGCTACTTCGATT 58.899 34.615 6.96 5.82 38.33 3.34
45 46 6.636705 TGTAATGTTAGTTGGCTACTTCGAT 58.363 36.000 6.96 0.00 38.33 3.59
46 47 6.028146 TGTAATGTTAGTTGGCTACTTCGA 57.972 37.500 6.96 0.00 38.33 3.71
47 48 6.715344 TTGTAATGTTAGTTGGCTACTTCG 57.285 37.500 6.96 0.00 38.33 3.79
53 54 8.893727 GTGAGATATTTGTAATGTTAGTTGGCT 58.106 33.333 0.00 0.00 0.00 4.75
54 55 8.673711 TGTGAGATATTTGTAATGTTAGTTGGC 58.326 33.333 0.00 0.00 0.00 4.52
62 63 9.897744 CAACAGTTTGTGAGATATTTGTAATGT 57.102 29.630 0.00 0.00 0.00 2.71
63 64 9.345517 CCAACAGTTTGTGAGATATTTGTAATG 57.654 33.333 0.00 0.00 0.00 1.90
64 65 9.077885 ACCAACAGTTTGTGAGATATTTGTAAT 57.922 29.630 0.00 0.00 0.00 1.89
65 66 8.458573 ACCAACAGTTTGTGAGATATTTGTAA 57.541 30.769 0.00 0.00 0.00 2.41
66 67 7.174253 GGACCAACAGTTTGTGAGATATTTGTA 59.826 37.037 0.00 0.00 0.00 2.41
67 68 6.016276 GGACCAACAGTTTGTGAGATATTTGT 60.016 38.462 0.00 0.00 0.00 2.83
68 69 6.016360 TGGACCAACAGTTTGTGAGATATTTG 60.016 38.462 0.00 0.00 0.00 2.32
69 70 6.068010 TGGACCAACAGTTTGTGAGATATTT 58.932 36.000 0.00 0.00 0.00 1.40
70 71 5.630121 TGGACCAACAGTTTGTGAGATATT 58.370 37.500 0.00 0.00 0.00 1.28
71 72 5.241403 TGGACCAACAGTTTGTGAGATAT 57.759 39.130 0.00 0.00 0.00 1.63
72 73 4.698201 TGGACCAACAGTTTGTGAGATA 57.302 40.909 0.00 0.00 0.00 1.98
73 74 3.576078 TGGACCAACAGTTTGTGAGAT 57.424 42.857 0.00 0.00 0.00 2.75
74 75 3.358111 TTGGACCAACAGTTTGTGAGA 57.642 42.857 1.69 0.00 0.00 3.27
75 76 4.097741 TCATTTGGACCAACAGTTTGTGAG 59.902 41.667 6.36 0.00 0.00 3.51
76 77 4.019858 TCATTTGGACCAACAGTTTGTGA 58.980 39.130 6.36 0.73 0.00 3.58
77 78 4.362279 CTCATTTGGACCAACAGTTTGTG 58.638 43.478 6.36 0.00 0.00 3.33
78 79 3.181476 GCTCATTTGGACCAACAGTTTGT 60.181 43.478 6.36 0.00 0.00 2.83
79 80 3.068590 AGCTCATTTGGACCAACAGTTTG 59.931 43.478 6.36 0.59 0.00 2.93
80 81 3.068590 CAGCTCATTTGGACCAACAGTTT 59.931 43.478 6.36 0.00 0.00 2.66
81 82 2.624838 CAGCTCATTTGGACCAACAGTT 59.375 45.455 6.36 0.00 0.00 3.16
82 83 2.233271 CAGCTCATTTGGACCAACAGT 58.767 47.619 6.36 0.00 0.00 3.55
83 84 1.068055 GCAGCTCATTTGGACCAACAG 60.068 52.381 6.36 4.60 0.00 3.16
84 85 0.961019 GCAGCTCATTTGGACCAACA 59.039 50.000 6.36 0.00 0.00 3.33
85 86 0.109597 CGCAGCTCATTTGGACCAAC 60.110 55.000 6.36 0.00 0.00 3.77
86 87 0.537143 ACGCAGCTCATTTGGACCAA 60.537 50.000 1.69 1.69 0.00 3.67
87 88 0.537143 AACGCAGCTCATTTGGACCA 60.537 50.000 0.00 0.00 0.00 4.02
88 89 0.598065 AAACGCAGCTCATTTGGACC 59.402 50.000 0.00 0.00 0.00 4.46
89 90 2.422276 AAAACGCAGCTCATTTGGAC 57.578 45.000 0.00 0.00 0.00 4.02
110 111 9.489084 GCACACATGTATCCAATACTATTCTAA 57.511 33.333 0.00 0.00 36.70 2.10
111 112 8.870116 AGCACACATGTATCCAATACTATTCTA 58.130 33.333 0.00 0.00 36.70 2.10
112 113 7.739825 AGCACACATGTATCCAATACTATTCT 58.260 34.615 0.00 0.00 36.70 2.40
113 114 7.969536 AGCACACATGTATCCAATACTATTC 57.030 36.000 0.00 0.00 36.70 1.75
114 115 8.752005 AAAGCACACATGTATCCAATACTATT 57.248 30.769 0.00 0.00 36.70 1.73
115 116 9.273016 GTAAAGCACACATGTATCCAATACTAT 57.727 33.333 0.00 0.00 36.70 2.12
116 117 8.482943 AGTAAAGCACACATGTATCCAATACTA 58.517 33.333 0.00 0.00 36.70 1.82
117 118 7.338710 AGTAAAGCACACATGTATCCAATACT 58.661 34.615 0.00 1.56 36.70 2.12
118 119 7.553881 AGTAAAGCACACATGTATCCAATAC 57.446 36.000 0.00 0.00 36.29 1.89
119 120 9.674068 TTAAGTAAAGCACACATGTATCCAATA 57.326 29.630 0.00 0.00 0.00 1.90
120 121 8.574251 TTAAGTAAAGCACACATGTATCCAAT 57.426 30.769 0.00 0.00 0.00 3.16
121 122 7.987750 TTAAGTAAAGCACACATGTATCCAA 57.012 32.000 0.00 0.00 0.00 3.53
122 123 7.987750 TTTAAGTAAAGCACACATGTATCCA 57.012 32.000 0.00 0.00 0.00 3.41
123 124 9.289303 CAATTTAAGTAAAGCACACATGTATCC 57.711 33.333 0.00 0.00 0.00 2.59
124 125 9.840427 ACAATTTAAGTAAAGCACACATGTATC 57.160 29.630 0.00 0.00 0.00 2.24
127 128 8.940768 AAACAATTTAAGTAAAGCACACATGT 57.059 26.923 0.00 0.00 0.00 3.21
128 129 9.848172 GAAAACAATTTAAGTAAAGCACACATG 57.152 29.630 0.00 0.00 0.00 3.21
129 130 9.040939 GGAAAACAATTTAAGTAAAGCACACAT 57.959 29.630 0.00 0.00 0.00 3.21
130 131 7.221067 CGGAAAACAATTTAAGTAAAGCACACA 59.779 33.333 0.00 0.00 0.00 3.72
131 132 7.552187 CGGAAAACAATTTAAGTAAAGCACAC 58.448 34.615 0.00 0.00 0.00 3.82
132 133 6.199342 GCGGAAAACAATTTAAGTAAAGCACA 59.801 34.615 0.00 0.00 0.00 4.57
133 134 6.199342 TGCGGAAAACAATTTAAGTAAAGCAC 59.801 34.615 0.00 0.00 0.00 4.40
134 135 6.273825 TGCGGAAAACAATTTAAGTAAAGCA 58.726 32.000 0.00 0.00 0.00 3.91
135 136 6.757026 TGCGGAAAACAATTTAAGTAAAGC 57.243 33.333 0.00 0.00 0.00 3.51
136 137 8.053653 GTGTTGCGGAAAACAATTTAAGTAAAG 58.946 33.333 4.93 0.00 41.52 1.85
137 138 7.010275 GGTGTTGCGGAAAACAATTTAAGTAAA 59.990 33.333 12.38 0.00 41.52 2.01
138 139 6.476053 GGTGTTGCGGAAAACAATTTAAGTAA 59.524 34.615 12.38 0.00 41.52 2.24
139 140 5.978322 GGTGTTGCGGAAAACAATTTAAGTA 59.022 36.000 12.38 0.00 41.52 2.24
140 141 4.806775 GGTGTTGCGGAAAACAATTTAAGT 59.193 37.500 12.38 0.00 41.52 2.24
141 142 4.806247 TGGTGTTGCGGAAAACAATTTAAG 59.194 37.500 12.38 0.00 41.52 1.85
142 143 4.755411 TGGTGTTGCGGAAAACAATTTAA 58.245 34.783 12.38 0.00 41.52 1.52
143 144 4.386867 TGGTGTTGCGGAAAACAATTTA 57.613 36.364 12.38 0.00 41.52 1.40
144 145 3.252974 TGGTGTTGCGGAAAACAATTT 57.747 38.095 12.38 0.00 41.52 1.82
145 146 2.969628 TGGTGTTGCGGAAAACAATT 57.030 40.000 12.38 0.00 41.52 2.32
146 147 2.363680 TCATGGTGTTGCGGAAAACAAT 59.636 40.909 12.38 2.84 41.52 2.71
147 148 1.751351 TCATGGTGTTGCGGAAAACAA 59.249 42.857 12.38 0.00 41.52 2.83
148 149 1.393603 TCATGGTGTTGCGGAAAACA 58.606 45.000 12.38 2.37 37.71 2.83
149 150 2.500509 TTCATGGTGTTGCGGAAAAC 57.499 45.000 0.50 0.50 0.00 2.43
150 151 3.320541 AGATTTCATGGTGTTGCGGAAAA 59.679 39.130 0.00 0.00 31.98 2.29
151 152 2.890311 AGATTTCATGGTGTTGCGGAAA 59.110 40.909 0.00 0.00 32.66 3.13
152 153 2.487762 GAGATTTCATGGTGTTGCGGAA 59.512 45.455 0.00 0.00 0.00 4.30
153 154 2.083774 GAGATTTCATGGTGTTGCGGA 58.916 47.619 0.00 0.00 0.00 5.54
154 155 1.811965 TGAGATTTCATGGTGTTGCGG 59.188 47.619 0.00 0.00 0.00 5.69
155 156 3.770263 ATGAGATTTCATGGTGTTGCG 57.230 42.857 0.00 0.00 42.41 4.85
175 176 9.225436 TGTGTAGCAATCTTATGTTATTTCACA 57.775 29.630 0.00 0.00 0.00 3.58
214 215 9.334947 TCACATGAAATTTTGGCTATTTTTGAA 57.665 25.926 0.00 0.00 0.00 2.69
215 216 8.899427 TCACATGAAATTTTGGCTATTTTTGA 57.101 26.923 0.00 0.00 0.00 2.69
216 217 9.947669 TTTCACATGAAATTTTGGCTATTTTTG 57.052 25.926 0.00 0.00 38.94 2.44
261 262 4.693566 CAGCATTGGAGATGCACAATTTTT 59.306 37.500 12.87 0.00 46.77 1.94
262 263 4.250464 CAGCATTGGAGATGCACAATTTT 58.750 39.130 12.87 0.00 46.77 1.82
263 264 3.857052 CAGCATTGGAGATGCACAATTT 58.143 40.909 12.87 0.00 46.77 1.82
264 265 3.520290 CAGCATTGGAGATGCACAATT 57.480 42.857 12.87 0.00 46.77 2.32
271 272 3.604875 AAAAAGGCAGCATTGGAGATG 57.395 42.857 0.00 0.00 0.00 2.90
290 291 4.135306 TGTAAGTGCATCGGTGGTAAAAA 58.865 39.130 0.00 0.00 0.00 1.94
291 292 3.741249 TGTAAGTGCATCGGTGGTAAAA 58.259 40.909 0.00 0.00 0.00 1.52
292 293 3.404224 TGTAAGTGCATCGGTGGTAAA 57.596 42.857 0.00 0.00 0.00 2.01
293 294 3.404224 TTGTAAGTGCATCGGTGGTAA 57.596 42.857 0.00 0.00 0.00 2.85
294 295 3.068560 GTTTGTAAGTGCATCGGTGGTA 58.931 45.455 0.00 0.00 0.00 3.25
295 296 1.877443 GTTTGTAAGTGCATCGGTGGT 59.123 47.619 0.00 0.00 0.00 4.16
296 297 2.095768 CAGTTTGTAAGTGCATCGGTGG 60.096 50.000 0.00 0.00 0.00 4.61
297 298 2.095768 CCAGTTTGTAAGTGCATCGGTG 60.096 50.000 0.00 0.00 0.00 4.94
298 299 2.151202 CCAGTTTGTAAGTGCATCGGT 58.849 47.619 0.00 0.00 0.00 4.69
299 300 2.159627 GTCCAGTTTGTAAGTGCATCGG 59.840 50.000 0.00 0.00 0.00 4.18
300 301 3.067106 AGTCCAGTTTGTAAGTGCATCG 58.933 45.455 0.00 0.00 0.00 3.84
301 302 4.065088 TGAGTCCAGTTTGTAAGTGCATC 58.935 43.478 0.00 0.00 0.00 3.91
302 303 3.815401 GTGAGTCCAGTTTGTAAGTGCAT 59.185 43.478 0.00 0.00 0.00 3.96
303 304 3.118408 AGTGAGTCCAGTTTGTAAGTGCA 60.118 43.478 0.00 0.00 0.00 4.57
304 305 3.467803 AGTGAGTCCAGTTTGTAAGTGC 58.532 45.455 0.00 0.00 0.00 4.40
305 306 4.876107 ACAAGTGAGTCCAGTTTGTAAGTG 59.124 41.667 0.00 0.00 33.87 3.16
306 307 5.099042 ACAAGTGAGTCCAGTTTGTAAGT 57.901 39.130 0.00 0.00 33.87 2.24
307 308 5.116180 TGACAAGTGAGTCCAGTTTGTAAG 58.884 41.667 0.00 0.00 37.73 2.34
308 309 5.092554 TGACAAGTGAGTCCAGTTTGTAA 57.907 39.130 0.00 0.00 37.73 2.41
309 310 4.442893 CCTGACAAGTGAGTCCAGTTTGTA 60.443 45.833 0.00 0.00 37.73 2.41
310 311 3.535561 CTGACAAGTGAGTCCAGTTTGT 58.464 45.455 0.00 0.00 37.73 2.83
311 312 2.874701 CCTGACAAGTGAGTCCAGTTTG 59.125 50.000 0.00 0.00 37.73 2.93
312 313 2.771943 TCCTGACAAGTGAGTCCAGTTT 59.228 45.455 0.00 0.00 37.73 2.66
313 314 2.398588 TCCTGACAAGTGAGTCCAGTT 58.601 47.619 0.00 0.00 37.73 3.16
314 315 2.088104 TCCTGACAAGTGAGTCCAGT 57.912 50.000 0.00 0.00 37.73 4.00
315 316 3.007290 TGATTCCTGACAAGTGAGTCCAG 59.993 47.826 0.00 0.00 37.73 3.86
316 317 2.972021 TGATTCCTGACAAGTGAGTCCA 59.028 45.455 0.00 0.00 37.73 4.02
317 318 3.685139 TGATTCCTGACAAGTGAGTCC 57.315 47.619 0.00 0.00 37.73 3.85
318 319 4.573900 ACATGATTCCTGACAAGTGAGTC 58.426 43.478 0.00 0.00 38.99 3.36
319 320 4.040829 TGACATGATTCCTGACAAGTGAGT 59.959 41.667 0.00 0.00 0.00 3.41
320 321 4.572909 TGACATGATTCCTGACAAGTGAG 58.427 43.478 0.00 0.00 0.00 3.51
321 322 4.622260 TGACATGATTCCTGACAAGTGA 57.378 40.909 0.00 0.00 0.00 3.41
322 323 4.083110 GGTTGACATGATTCCTGACAAGTG 60.083 45.833 0.00 0.00 30.94 3.16
323 324 4.074970 GGTTGACATGATTCCTGACAAGT 58.925 43.478 0.00 0.00 30.94 3.16
324 325 3.441572 GGGTTGACATGATTCCTGACAAG 59.558 47.826 0.00 0.00 30.94 3.16
325 326 3.181435 TGGGTTGACATGATTCCTGACAA 60.181 43.478 0.00 3.55 0.00 3.18
326 327 2.374839 TGGGTTGACATGATTCCTGACA 59.625 45.455 0.00 0.00 0.00 3.58
327 328 3.071874 TGGGTTGACATGATTCCTGAC 57.928 47.619 0.00 0.00 0.00 3.51
328 329 3.524789 AGATGGGTTGACATGATTCCTGA 59.475 43.478 0.00 0.00 0.00 3.86
329 330 3.894759 AGATGGGTTGACATGATTCCTG 58.105 45.455 0.00 0.00 0.00 3.86
330 331 5.715439 TTAGATGGGTTGACATGATTCCT 57.285 39.130 0.00 0.00 0.00 3.36
331 332 6.547141 TCATTTAGATGGGTTGACATGATTCC 59.453 38.462 0.00 0.00 33.93 3.01
332 333 7.572523 TCATTTAGATGGGTTGACATGATTC 57.427 36.000 0.00 0.00 33.93 2.52
348 349 8.150945 GCAGTTAGGTCTAATCCATCATTTAGA 58.849 37.037 0.00 0.00 33.24 2.10
349 350 7.933577 TGCAGTTAGGTCTAATCCATCATTTAG 59.066 37.037 0.00 0.00 0.00 1.85
350 351 7.801104 TGCAGTTAGGTCTAATCCATCATTTA 58.199 34.615 0.00 0.00 0.00 1.40
351 352 6.662755 TGCAGTTAGGTCTAATCCATCATTT 58.337 36.000 0.00 0.00 0.00 2.32
352 353 6.252599 TGCAGTTAGGTCTAATCCATCATT 57.747 37.500 0.00 0.00 0.00 2.57
353 354 5.894298 TGCAGTTAGGTCTAATCCATCAT 57.106 39.130 0.00 0.00 0.00 2.45
354 355 5.692115 TTGCAGTTAGGTCTAATCCATCA 57.308 39.130 0.00 0.00 0.00 3.07
355 356 6.291377 TCATTGCAGTTAGGTCTAATCCATC 58.709 40.000 0.00 0.00 0.00 3.51
356 357 6.252599 TCATTGCAGTTAGGTCTAATCCAT 57.747 37.500 0.00 0.00 0.00 3.41
357 358 5.692115 TCATTGCAGTTAGGTCTAATCCA 57.308 39.130 0.00 0.00 0.00 3.41
358 359 7.573968 AATTCATTGCAGTTAGGTCTAATCC 57.426 36.000 0.00 0.00 0.00 3.01
359 360 8.560374 GGTAATTCATTGCAGTTAGGTCTAATC 58.440 37.037 0.00 0.00 0.00 1.75
360 361 7.502561 GGGTAATTCATTGCAGTTAGGTCTAAT 59.497 37.037 0.00 0.00 0.00 1.73
361 362 6.826741 GGGTAATTCATTGCAGTTAGGTCTAA 59.173 38.462 0.00 0.00 0.00 2.10
362 363 6.354130 GGGTAATTCATTGCAGTTAGGTCTA 58.646 40.000 0.00 0.00 0.00 2.59
363 364 5.193679 GGGTAATTCATTGCAGTTAGGTCT 58.806 41.667 0.00 0.00 0.00 3.85
364 365 4.338400 GGGGTAATTCATTGCAGTTAGGTC 59.662 45.833 0.00 0.00 0.00 3.85
365 366 4.264172 TGGGGTAATTCATTGCAGTTAGGT 60.264 41.667 0.00 0.00 0.00 3.08
366 367 4.277476 TGGGGTAATTCATTGCAGTTAGG 58.723 43.478 0.00 0.00 0.00 2.69
367 368 5.913137 TTGGGGTAATTCATTGCAGTTAG 57.087 39.130 0.00 0.00 0.00 2.34
368 369 7.563188 ACATATTGGGGTAATTCATTGCAGTTA 59.437 33.333 0.00 0.00 0.00 2.24
369 370 6.383726 ACATATTGGGGTAATTCATTGCAGTT 59.616 34.615 0.00 0.00 0.00 3.16
370 371 5.898972 ACATATTGGGGTAATTCATTGCAGT 59.101 36.000 0.00 0.00 0.00 4.40
371 372 6.218019 CACATATTGGGGTAATTCATTGCAG 58.782 40.000 0.00 0.00 0.00 4.41
372 373 5.070180 CCACATATTGGGGTAATTCATTGCA 59.930 40.000 0.00 0.00 42.54 4.08
373 374 5.540911 CCACATATTGGGGTAATTCATTGC 58.459 41.667 0.00 0.00 42.54 3.56
387 388 7.649370 TTGTTGCATAAAACACCACATATTG 57.351 32.000 0.00 0.00 39.70 1.90
388 389 7.930865 AGTTTGTTGCATAAAACACCACATATT 59.069 29.630 20.58 1.50 39.70 1.28
389 390 7.441017 AGTTTGTTGCATAAAACACCACATAT 58.559 30.769 20.58 2.04 39.70 1.78
390 391 6.810911 AGTTTGTTGCATAAAACACCACATA 58.189 32.000 20.58 0.00 39.70 2.29
391 392 5.669477 AGTTTGTTGCATAAAACACCACAT 58.331 33.333 20.58 3.13 39.70 3.21
392 393 5.078411 AGTTTGTTGCATAAAACACCACA 57.922 34.783 20.58 3.28 39.70 4.17
393 394 5.350091 ACAAGTTTGTTGCATAAAACACCAC 59.650 36.000 20.58 8.05 39.70 4.16
394 395 5.482908 ACAAGTTTGTTGCATAAAACACCA 58.517 33.333 20.58 0.00 39.70 4.17
395 396 7.527084 TTACAAGTTTGTTGCATAAAACACC 57.473 32.000 20.58 3.28 39.70 4.16
396 397 8.652463 ACTTTACAAGTTTGTTGCATAAAACAC 58.348 29.630 20.58 2.79 42.35 3.32
397 398 8.764524 ACTTTACAAGTTTGTTGCATAAAACA 57.235 26.923 20.58 6.24 42.35 2.83
399 400 9.522804 CCTACTTTACAAGTTTGTTGCATAAAA 57.477 29.630 2.46 0.00 42.81 1.52
400 401 8.688151 ACCTACTTTACAAGTTTGTTGCATAAA 58.312 29.630 2.46 0.00 42.81 1.40
401 402 8.228035 ACCTACTTTACAAGTTTGTTGCATAA 57.772 30.769 2.46 0.00 42.81 1.90
402 403 7.811117 ACCTACTTTACAAGTTTGTTGCATA 57.189 32.000 2.46 0.00 42.81 3.14
403 404 6.709018 ACCTACTTTACAAGTTTGTTGCAT 57.291 33.333 2.46 0.00 42.81 3.96
404 405 7.811117 ATACCTACTTTACAAGTTTGTTGCA 57.189 32.000 2.46 0.00 42.81 4.08
405 406 9.524106 AAAATACCTACTTTACAAGTTTGTTGC 57.476 29.630 2.46 0.00 42.81 4.17
409 410 8.964150 GCACAAAATACCTACTTTACAAGTTTG 58.036 33.333 0.00 0.00 42.81 2.93
410 411 8.688151 TGCACAAAATACCTACTTTACAAGTTT 58.312 29.630 0.00 0.00 42.81 2.66
411 412 8.228035 TGCACAAAATACCTACTTTACAAGTT 57.772 30.769 0.00 0.00 42.81 2.66
412 413 7.811117 TGCACAAAATACCTACTTTACAAGT 57.189 32.000 0.00 0.00 45.40 3.16
413 414 8.132362 TGTTGCACAAAATACCTACTTTACAAG 58.868 33.333 0.00 0.00 0.00 3.16
414 415 7.916450 GTGTTGCACAAAATACCTACTTTACAA 59.084 33.333 0.00 0.00 34.08 2.41
415 416 7.283580 AGTGTTGCACAAAATACCTACTTTACA 59.716 33.333 2.01 0.00 36.74 2.41
416 417 7.645402 AGTGTTGCACAAAATACCTACTTTAC 58.355 34.615 2.01 0.00 36.74 2.01
417 418 7.811117 AGTGTTGCACAAAATACCTACTTTA 57.189 32.000 2.01 0.00 36.74 1.85
418 419 6.709018 AGTGTTGCACAAAATACCTACTTT 57.291 33.333 2.01 0.00 36.74 2.66
419 420 6.072673 GCTAGTGTTGCACAAAATACCTACTT 60.073 38.462 2.01 0.00 36.74 2.24
420 421 5.411669 GCTAGTGTTGCACAAAATACCTACT 59.588 40.000 2.01 0.00 36.74 2.57
421 422 5.180492 TGCTAGTGTTGCACAAAATACCTAC 59.820 40.000 2.01 0.00 36.74 3.18
422 423 5.309638 TGCTAGTGTTGCACAAAATACCTA 58.690 37.500 2.01 0.00 36.74 3.08
423 424 4.141287 TGCTAGTGTTGCACAAAATACCT 58.859 39.130 2.01 0.00 36.74 3.08
424 425 4.497473 TGCTAGTGTTGCACAAAATACC 57.503 40.909 2.01 0.00 36.74 2.73
433 434 2.374184 ACTTTTGGTGCTAGTGTTGCA 58.626 42.857 0.00 0.00 38.19 4.08
434 435 3.058224 CCTACTTTTGGTGCTAGTGTTGC 60.058 47.826 0.00 0.00 0.00 4.17
435 436 4.024048 CACCTACTTTTGGTGCTAGTGTTG 60.024 45.833 0.00 0.00 46.73 3.33
436 437 4.134563 CACCTACTTTTGGTGCTAGTGTT 58.865 43.478 0.00 0.00 46.73 3.32
437 438 3.740115 CACCTACTTTTGGTGCTAGTGT 58.260 45.455 0.00 0.00 46.73 3.55
444 445 3.736740 GCACAAACCACCTACTTTTGGTG 60.737 47.826 5.98 5.98 45.84 4.17
446 447 2.428890 TGCACAAACCACCTACTTTTGG 59.571 45.455 0.00 0.00 39.00 3.28
447 448 3.791973 TGCACAAACCACCTACTTTTG 57.208 42.857 0.00 0.00 36.49 2.44
448 449 5.351948 AATTGCACAAACCACCTACTTTT 57.648 34.783 0.00 0.00 0.00 2.27
449 450 5.351948 AAATTGCACAAACCACCTACTTT 57.648 34.783 0.00 0.00 0.00 2.66
450 451 4.202212 GGAAATTGCACAAACCACCTACTT 60.202 41.667 0.00 0.00 0.00 2.24
451 452 3.320826 GGAAATTGCACAAACCACCTACT 59.679 43.478 0.00 0.00 0.00 2.57
452 453 3.320826 AGGAAATTGCACAAACCACCTAC 59.679 43.478 0.00 0.00 0.00 3.18
453 454 3.571590 AGGAAATTGCACAAACCACCTA 58.428 40.909 0.00 0.00 0.00 3.08
454 455 2.365293 GAGGAAATTGCACAAACCACCT 59.635 45.455 0.00 0.00 0.00 4.00
455 456 2.754472 GAGGAAATTGCACAAACCACC 58.246 47.619 0.00 0.00 0.00 4.61
456 457 2.393764 CGAGGAAATTGCACAAACCAC 58.606 47.619 0.00 0.00 0.00 4.16
457 458 1.339610 CCGAGGAAATTGCACAAACCA 59.660 47.619 0.00 0.00 0.00 3.67
458 459 1.934849 GCCGAGGAAATTGCACAAACC 60.935 52.381 0.00 0.00 0.00 3.27
459 460 1.000274 AGCCGAGGAAATTGCACAAAC 60.000 47.619 0.00 0.00 0.00 2.93
460 461 1.327303 AGCCGAGGAAATTGCACAAA 58.673 45.000 0.00 0.00 0.00 2.83
461 462 1.327303 AAGCCGAGGAAATTGCACAA 58.673 45.000 0.00 0.00 0.00 3.33
462 463 2.192664 TAAGCCGAGGAAATTGCACA 57.807 45.000 0.00 0.00 0.00 4.57
463 464 3.782889 AATAAGCCGAGGAAATTGCAC 57.217 42.857 0.00 0.00 0.00 4.57
464 465 4.016444 AGAAATAAGCCGAGGAAATTGCA 58.984 39.130 0.00 0.00 0.00 4.08
465 466 4.096382 TGAGAAATAAGCCGAGGAAATTGC 59.904 41.667 0.00 0.00 0.00 3.56
466 467 5.818136 TGAGAAATAAGCCGAGGAAATTG 57.182 39.130 0.00 0.00 0.00 2.32
467 468 6.180472 TCTTGAGAAATAAGCCGAGGAAATT 58.820 36.000 0.00 0.00 0.00 1.82
468 469 5.745227 TCTTGAGAAATAAGCCGAGGAAAT 58.255 37.500 0.00 0.00 0.00 2.17
469 470 5.046591 TCTCTTGAGAAATAAGCCGAGGAAA 60.047 40.000 0.00 0.00 0.00 3.13
470 471 4.466370 TCTCTTGAGAAATAAGCCGAGGAA 59.534 41.667 0.00 0.00 0.00 3.36
471 472 4.023980 TCTCTTGAGAAATAAGCCGAGGA 58.976 43.478 0.00 0.00 0.00 3.71
472 473 4.392921 TCTCTTGAGAAATAAGCCGAGG 57.607 45.455 0.00 0.00 0.00 4.63
473 474 4.679197 CGATCTCTTGAGAAATAAGCCGAG 59.321 45.833 4.33 0.00 0.00 4.63
474 475 4.499865 CCGATCTCTTGAGAAATAAGCCGA 60.500 45.833 4.33 0.00 0.00 5.54
475 476 3.738282 CCGATCTCTTGAGAAATAAGCCG 59.262 47.826 4.33 1.38 0.00 5.52
476 477 4.950050 TCCGATCTCTTGAGAAATAAGCC 58.050 43.478 4.33 0.00 0.00 4.35
477 478 5.407995 CCATCCGATCTCTTGAGAAATAAGC 59.592 44.000 4.33 0.00 0.00 3.09
495 496 8.532977 AAAAATTGTTCTATTTCAACCATCCG 57.467 30.769 0.00 0.00 0.00 4.18
521 524 4.676196 GCACGAGGGAAAACGTTCTATCTA 60.676 45.833 0.00 0.00 40.76 1.98
624 627 2.364780 GCGGTACTAAGGGCCCAGT 61.365 63.158 27.56 22.24 0.00 4.00
664 2406 8.248904 AGAGGAGAGAATTACGACTAGTACTA 57.751 38.462 1.89 1.89 34.56 1.82
723 2472 7.211573 TCAAAGGTACGACTAGTCAAATCAAA 58.788 34.615 22.37 0.00 0.00 2.69
755 2504 3.553096 CGCGGCCAAGAATCTATCTAGTT 60.553 47.826 2.24 0.00 37.42 2.24
756 2505 2.029828 CGCGGCCAAGAATCTATCTAGT 60.030 50.000 2.24 0.00 37.42 2.57
757 2506 2.229062 TCGCGGCCAAGAATCTATCTAG 59.771 50.000 6.13 0.00 37.42 2.43
758 2507 2.235891 TCGCGGCCAAGAATCTATCTA 58.764 47.619 6.13 0.00 37.42 1.98
759 2508 1.040646 TCGCGGCCAAGAATCTATCT 58.959 50.000 6.13 0.00 41.32 1.98
769 2518 2.612212 GAGAATAAAGAATCGCGGCCAA 59.388 45.455 6.13 0.00 0.00 4.52
770 2519 2.158957 AGAGAATAAAGAATCGCGGCCA 60.159 45.455 6.13 0.00 0.00 5.36
809 2563 1.045407 AACTGTCAACTACCTGCCGA 58.955 50.000 0.00 0.00 0.00 5.54
891 2650 4.081365 GGCTCTATTTATAGTGGCTCCTCC 60.081 50.000 14.48 0.00 42.54 4.30
907 2666 4.355588 AGATGTGGTAGGAGTAGGCTCTAT 59.644 45.833 0.00 0.00 41.38 1.98
938 2698 1.383386 GGTTGGGTTGGGTTGGGTT 60.383 57.895 0.00 0.00 0.00 4.11
939 2699 2.284151 GGTTGGGTTGGGTTGGGT 59.716 61.111 0.00 0.00 0.00 4.51
940 2700 2.525629 GGGTTGGGTTGGGTTGGG 60.526 66.667 0.00 0.00 0.00 4.12
941 2701 1.383248 TTGGGTTGGGTTGGGTTGG 60.383 57.895 0.00 0.00 0.00 3.77
942 2702 1.826709 GTTGGGTTGGGTTGGGTTG 59.173 57.895 0.00 0.00 0.00 3.77
982 2742 3.583806 CCATGATCTGATCGGTTAGCTC 58.416 50.000 12.65 0.00 0.00 4.09
1068 2828 1.626321 TCCGCTGAAACCAATGTAGGA 59.374 47.619 0.00 0.00 0.00 2.94
1089 2849 3.053544 AGAGAGAGGGAGATTACGAACCA 60.054 47.826 0.00 0.00 0.00 3.67
1103 2863 1.108727 ATGGCGCAGAGAGAGAGAGG 61.109 60.000 10.83 0.00 0.00 3.69
1193 2956 6.475076 AGTTCACAGACGATACGTACTAGTAG 59.525 42.308 1.87 0.00 41.37 2.57
1194 2957 6.333416 AGTTCACAGACGATACGTACTAGTA 58.667 40.000 0.00 0.00 41.37 1.82
1195 2958 5.174395 AGTTCACAGACGATACGTACTAGT 58.826 41.667 0.00 0.00 41.37 2.57
1208 2971 4.278669 TGTACTCCTCTGAAGTTCACAGAC 59.721 45.833 9.50 1.19 39.10 3.51
1229 2992 6.210185 GGGTACATACGGAATCCTATACTTGT 59.790 42.308 0.00 0.00 0.00 3.16
1320 3083 3.392595 GATGCACTTGCGCTCCTGC 62.393 63.158 9.73 12.70 45.83 4.85
1328 3091 3.818787 CGCCCCTGATGCACTTGC 61.819 66.667 0.00 0.00 42.50 4.01
1438 3201 4.169461 AGGGAGTAGTGGTAATGCCTACTA 59.831 45.833 0.00 0.00 42.67 1.82
1456 3219 6.628398 GCTCTTATATTATGGAACGGAGGGAG 60.628 46.154 0.00 0.00 0.00 4.30
1457 3220 5.187186 GCTCTTATATTATGGAACGGAGGGA 59.813 44.000 0.00 0.00 0.00 4.20
1458 3221 5.420409 GCTCTTATATTATGGAACGGAGGG 58.580 45.833 0.00 0.00 0.00 4.30
1459 3222 5.103000 CGCTCTTATATTATGGAACGGAGG 58.897 45.833 0.00 0.00 0.00 4.30
1460 3223 5.710984 ACGCTCTTATATTATGGAACGGAG 58.289 41.667 0.00 0.00 0.00 4.63
1461 3224 5.717078 ACGCTCTTATATTATGGAACGGA 57.283 39.130 0.00 0.00 0.00 4.69
1462 3225 6.780706 AAACGCTCTTATATTATGGAACGG 57.219 37.500 0.00 0.00 0.00 4.44
1463 3226 7.586300 CCAAAAACGCTCTTATATTATGGAACG 59.414 37.037 0.00 0.00 0.00 3.95
1464 3227 7.378728 GCCAAAAACGCTCTTATATTATGGAAC 59.621 37.037 0.00 0.00 0.00 3.62
1465 3228 7.067615 TGCCAAAAACGCTCTTATATTATGGAA 59.932 33.333 0.00 0.00 0.00 3.53
1466 3229 6.544197 TGCCAAAAACGCTCTTATATTATGGA 59.456 34.615 0.00 0.00 0.00 3.41
1467 3230 6.636850 GTGCCAAAAACGCTCTTATATTATGG 59.363 38.462 0.00 0.00 0.00 2.74
1468 3231 7.417612 AGTGCCAAAAACGCTCTTATATTATG 58.582 34.615 0.00 0.00 0.00 1.90
1469 3232 7.568199 AGTGCCAAAAACGCTCTTATATTAT 57.432 32.000 0.00 0.00 0.00 1.28
1470 3233 6.995511 AGTGCCAAAAACGCTCTTATATTA 57.004 33.333 0.00 0.00 0.00 0.98
1471 3234 5.897377 AGTGCCAAAAACGCTCTTATATT 57.103 34.783 0.00 0.00 0.00 1.28
1472 3235 5.878116 TGTAGTGCCAAAAACGCTCTTATAT 59.122 36.000 0.00 0.00 32.65 0.86
1473 3236 5.121142 GTGTAGTGCCAAAAACGCTCTTATA 59.879 40.000 0.00 0.00 32.65 0.98
1474 3237 4.069304 TGTAGTGCCAAAAACGCTCTTAT 58.931 39.130 0.00 0.00 32.65 1.73
1475 3238 3.249080 GTGTAGTGCCAAAAACGCTCTTA 59.751 43.478 0.00 0.00 32.65 2.10
1476 3239 2.032924 GTGTAGTGCCAAAAACGCTCTT 59.967 45.455 0.00 0.00 32.65 2.85
1477 3240 1.602377 GTGTAGTGCCAAAAACGCTCT 59.398 47.619 0.00 0.00 34.63 4.09
1478 3241 1.602377 AGTGTAGTGCCAAAAACGCTC 59.398 47.619 0.00 0.00 0.00 5.03
1479 3242 1.675552 AGTGTAGTGCCAAAAACGCT 58.324 45.000 0.00 0.00 0.00 5.07
1480 3243 2.546789 AGTAGTGTAGTGCCAAAAACGC 59.453 45.455 0.00 0.00 0.00 4.84
1481 3244 3.558418 ACAGTAGTGTAGTGCCAAAAACG 59.442 43.478 0.00 0.00 34.05 3.60
1482 3245 6.607735 TTACAGTAGTGTAGTGCCAAAAAC 57.392 37.500 10.25 0.00 40.33 2.43
1483 3246 7.627298 TTTTACAGTAGTGTAGTGCCAAAAA 57.373 32.000 10.25 5.98 40.33 1.94
1484 3247 7.627298 TTTTTACAGTAGTGTAGTGCCAAAA 57.373 32.000 10.25 10.64 40.33 2.44
1505 3268 9.675464 TCTGTCCCATAATATAAGAACGTTTTT 57.325 29.630 9.22 9.22 0.00 1.94
1506 3269 9.326413 CTCTGTCCCATAATATAAGAACGTTTT 57.674 33.333 0.46 0.00 0.00 2.43
1507 3270 7.441458 GCTCTGTCCCATAATATAAGAACGTTT 59.559 37.037 0.46 0.00 0.00 3.60
1508 3271 6.929606 GCTCTGTCCCATAATATAAGAACGTT 59.070 38.462 0.00 0.00 0.00 3.99
1509 3272 6.456501 GCTCTGTCCCATAATATAAGAACGT 58.543 40.000 0.00 0.00 0.00 3.99
1510 3273 5.573282 CGCTCTGTCCCATAATATAAGAACG 59.427 44.000 0.00 0.00 0.00 3.95
1511 3274 6.688578 TCGCTCTGTCCCATAATATAAGAAC 58.311 40.000 0.00 0.00 0.00 3.01
1512 3275 6.493802 ACTCGCTCTGTCCCATAATATAAGAA 59.506 38.462 0.00 0.00 0.00 2.52
1513 3276 6.010850 ACTCGCTCTGTCCCATAATATAAGA 58.989 40.000 0.00 0.00 0.00 2.10
1514 3277 6.274157 ACTCGCTCTGTCCCATAATATAAG 57.726 41.667 0.00 0.00 0.00 1.73
1515 3278 6.946583 ACTACTCGCTCTGTCCCATAATATAA 59.053 38.462 0.00 0.00 0.00 0.98
1516 3279 6.482524 ACTACTCGCTCTGTCCCATAATATA 58.517 40.000 0.00 0.00 0.00 0.86
1517 3280 5.326069 ACTACTCGCTCTGTCCCATAATAT 58.674 41.667 0.00 0.00 0.00 1.28
1518 3281 4.726583 ACTACTCGCTCTGTCCCATAATA 58.273 43.478 0.00 0.00 0.00 0.98
1519 3282 3.567397 ACTACTCGCTCTGTCCCATAAT 58.433 45.455 0.00 0.00 0.00 1.28
1520 3283 3.014304 ACTACTCGCTCTGTCCCATAA 57.986 47.619 0.00 0.00 0.00 1.90
1521 3284 2.730934 ACTACTCGCTCTGTCCCATA 57.269 50.000 0.00 0.00 0.00 2.74
1522 3285 1.853963 AACTACTCGCTCTGTCCCAT 58.146 50.000 0.00 0.00 0.00 4.00
1523 3286 2.502142 TAACTACTCGCTCTGTCCCA 57.498 50.000 0.00 0.00 0.00 4.37
1524 3287 4.388378 AAATAACTACTCGCTCTGTCCC 57.612 45.455 0.00 0.00 0.00 4.46
1525 3288 6.972722 AGATAAATAACTACTCGCTCTGTCC 58.027 40.000 0.00 0.00 0.00 4.02
1526 3289 6.793203 CGAGATAAATAACTACTCGCTCTGTC 59.207 42.308 0.00 0.00 42.39 3.51
1527 3290 6.482641 TCGAGATAAATAACTACTCGCTCTGT 59.517 38.462 0.00 0.00 46.20 3.41
1528 3291 6.889494 TCGAGATAAATAACTACTCGCTCTG 58.111 40.000 0.00 0.00 46.20 3.35
1529 3292 7.227116 ACTTCGAGATAAATAACTACTCGCTCT 59.773 37.037 0.00 0.00 46.20 4.09
1530 3293 7.354257 ACTTCGAGATAAATAACTACTCGCTC 58.646 38.462 0.00 0.00 46.20 5.03
1531 3294 7.261829 ACTTCGAGATAAATAACTACTCGCT 57.738 36.000 0.00 0.00 46.20 4.93
1532 3295 7.113264 GGAACTTCGAGATAAATAACTACTCGC 59.887 40.741 0.00 0.00 46.20 5.03
1534 3297 9.667989 GAGGAACTTCGAGATAAATAACTACTC 57.332 37.037 0.00 0.00 41.55 2.59
1535 3298 9.186837 TGAGGAACTTCGAGATAAATAACTACT 57.813 33.333 0.00 0.00 41.55 2.57
1536 3299 9.968870 ATGAGGAACTTCGAGATAAATAACTAC 57.031 33.333 0.00 0.00 41.55 2.73
1538 3301 8.145122 GGATGAGGAACTTCGAGATAAATAACT 58.855 37.037 0.00 0.00 41.55 2.24
1551 3314 1.993370 CGAACGTGGATGAGGAACTTC 59.007 52.381 0.00 0.00 41.55 3.01
1734 3506 3.671433 GCAAGACATTACACGGTCGTAGA 60.671 47.826 0.00 0.00 39.01 2.59
1787 3559 5.116225 CAGTTACGCGAAGATCATCATACAG 59.884 44.000 15.93 0.00 0.00 2.74
1801 3573 1.992667 CTGAGCATTTCAGTTACGCGA 59.007 47.619 15.93 0.00 46.77 5.87
1802 3574 2.425989 CTGAGCATTTCAGTTACGCG 57.574 50.000 3.53 3.53 46.77 6.01
1995 3769 8.968242 GCTGAAGATATTTTGAAACGTTTCTTT 58.032 29.630 33.94 20.76 38.02 2.52
2096 3947 7.625828 AACAAATATTTAGAAACGGAGGGAG 57.374 36.000 0.00 0.00 0.00 4.30
2097 3948 8.411991 AAAACAAATATTTAGAAACGGAGGGA 57.588 30.769 0.00 0.00 0.00 4.20
2121 3972 7.867403 GTGGCAGTCATTTGAAATCTCTAAAAA 59.133 33.333 0.00 0.00 0.00 1.94
2122 3973 7.014134 TGTGGCAGTCATTTGAAATCTCTAAAA 59.986 33.333 0.00 0.00 0.00 1.52
2123 3974 6.489700 TGTGGCAGTCATTTGAAATCTCTAAA 59.510 34.615 0.00 0.00 0.00 1.85
2124 3975 6.003326 TGTGGCAGTCATTTGAAATCTCTAA 58.997 36.000 0.00 0.00 0.00 2.10
2125 3976 5.559770 TGTGGCAGTCATTTGAAATCTCTA 58.440 37.500 0.00 0.00 0.00 2.43
2126 3977 4.401022 TGTGGCAGTCATTTGAAATCTCT 58.599 39.130 0.00 0.00 0.00 3.10
2127 3978 4.771590 TGTGGCAGTCATTTGAAATCTC 57.228 40.909 0.00 0.00 0.00 2.75
2128 3979 5.163723 CGTATGTGGCAGTCATTTGAAATCT 60.164 40.000 0.00 0.00 0.00 2.40
2129 3980 5.030295 CGTATGTGGCAGTCATTTGAAATC 58.970 41.667 0.00 0.00 0.00 2.17
2130 3981 4.142403 CCGTATGTGGCAGTCATTTGAAAT 60.142 41.667 0.00 0.00 0.00 2.17
2131 3982 3.190327 CCGTATGTGGCAGTCATTTGAAA 59.810 43.478 0.00 0.00 0.00 2.69
2132 3983 2.746904 CCGTATGTGGCAGTCATTTGAA 59.253 45.455 0.00 0.00 0.00 2.69
2133 3984 2.027653 TCCGTATGTGGCAGTCATTTGA 60.028 45.455 0.00 0.00 0.00 2.69
2134 3985 2.355197 TCCGTATGTGGCAGTCATTTG 58.645 47.619 0.00 0.00 0.00 2.32
2135 3986 2.779755 TCCGTATGTGGCAGTCATTT 57.220 45.000 0.00 0.00 0.00 2.32
2136 3987 2.092968 ACATCCGTATGTGGCAGTCATT 60.093 45.455 0.00 0.00 44.79 2.57
2137 3988 1.486310 ACATCCGTATGTGGCAGTCAT 59.514 47.619 0.00 0.00 44.79 3.06
2138 3989 0.901827 ACATCCGTATGTGGCAGTCA 59.098 50.000 0.00 0.00 44.79 3.41
2139 3990 2.882927 TACATCCGTATGTGGCAGTC 57.117 50.000 3.56 0.00 45.99 3.51
2140 3991 5.949952 TCTATATACATCCGTATGTGGCAGT 59.050 40.000 3.56 0.00 45.99 4.40
2141 3992 6.127730 TGTCTATATACATCCGTATGTGGCAG 60.128 42.308 3.56 0.00 45.99 4.85
2142 3993 5.712917 TGTCTATATACATCCGTATGTGGCA 59.287 40.000 3.56 0.00 45.99 4.92
2143 3994 6.203808 TGTCTATATACATCCGTATGTGGC 57.796 41.667 3.56 0.00 45.99 5.01
2176 4027 6.017933 CGAAGCAAAATGAGTGAATCTACAC 58.982 40.000 0.00 0.00 40.60 2.90
2177 4028 5.122239 CCGAAGCAAAATGAGTGAATCTACA 59.878 40.000 0.00 0.00 0.00 2.74
2178 4029 5.351465 TCCGAAGCAAAATGAGTGAATCTAC 59.649 40.000 0.00 0.00 0.00 2.59
2179 4030 5.487433 TCCGAAGCAAAATGAGTGAATCTA 58.513 37.500 0.00 0.00 0.00 1.98
2180 4031 4.326826 TCCGAAGCAAAATGAGTGAATCT 58.673 39.130 0.00 0.00 0.00 2.40
2181 4032 4.685169 TCCGAAGCAAAATGAGTGAATC 57.315 40.909 0.00 0.00 0.00 2.52
2182 4033 4.460382 ACATCCGAAGCAAAATGAGTGAAT 59.540 37.500 0.00 0.00 0.00 2.57
2183 4034 3.820467 ACATCCGAAGCAAAATGAGTGAA 59.180 39.130 0.00 0.00 0.00 3.18
2184 4035 3.189080 CACATCCGAAGCAAAATGAGTGA 59.811 43.478 0.00 0.00 0.00 3.41
2185 4036 3.058016 ACACATCCGAAGCAAAATGAGTG 60.058 43.478 0.00 0.00 0.00 3.51
2186 4037 3.149196 ACACATCCGAAGCAAAATGAGT 58.851 40.909 0.00 0.00 0.00 3.41
2187 4038 3.189080 TGACACATCCGAAGCAAAATGAG 59.811 43.478 0.00 0.00 0.00 2.90
2188 4039 3.058293 GTGACACATCCGAAGCAAAATGA 60.058 43.478 0.00 0.00 0.00 2.57
2189 4040 3.058016 AGTGACACATCCGAAGCAAAATG 60.058 43.478 8.59 0.00 0.00 2.32
2190 4041 3.149196 AGTGACACATCCGAAGCAAAAT 58.851 40.909 8.59 0.00 0.00 1.82
2191 4042 2.571212 AGTGACACATCCGAAGCAAAA 58.429 42.857 8.59 0.00 0.00 2.44
2192 4043 2.254546 AGTGACACATCCGAAGCAAA 57.745 45.000 8.59 0.00 0.00 3.68
2193 4044 1.872952 CAAGTGACACATCCGAAGCAA 59.127 47.619 8.59 0.00 0.00 3.91
2194 4045 1.202639 ACAAGTGACACATCCGAAGCA 60.203 47.619 8.59 0.00 0.00 3.91
2195 4046 1.512926 ACAAGTGACACATCCGAAGC 58.487 50.000 8.59 0.00 0.00 3.86
2196 4047 3.130633 TCAACAAGTGACACATCCGAAG 58.869 45.455 8.59 0.00 0.00 3.79
2197 4048 3.186702 TCAACAAGTGACACATCCGAA 57.813 42.857 8.59 0.00 0.00 4.30
2198 4049 2.900716 TCAACAAGTGACACATCCGA 57.099 45.000 8.59 0.00 0.00 4.55
2199 4050 3.961477 TTTCAACAAGTGACACATCCG 57.039 42.857 8.59 0.00 35.39 4.18
2200 4051 6.507023 AGAAATTTCAACAAGTGACACATCC 58.493 36.000 19.99 0.00 35.39 3.51
2201 4052 9.515020 TTTAGAAATTTCAACAAGTGACACATC 57.485 29.630 19.99 0.00 35.39 3.06
2202 4053 9.868277 TTTTAGAAATTTCAACAAGTGACACAT 57.132 25.926 19.99 0.00 35.39 3.21
2203 4054 9.698309 TTTTTAGAAATTTCAACAAGTGACACA 57.302 25.926 19.99 0.00 35.39 3.72
2225 4076 9.908152 CCTCCGTTCTTAAATATTTGTCTTTTT 57.092 29.630 11.05 0.00 0.00 1.94
2226 4077 9.292195 TCCTCCGTTCTTAAATATTTGTCTTTT 57.708 29.630 11.05 0.00 0.00 2.27
2227 4078 8.857694 TCCTCCGTTCTTAAATATTTGTCTTT 57.142 30.769 11.05 0.00 0.00 2.52
2228 4079 8.857694 TTCCTCCGTTCTTAAATATTTGTCTT 57.142 30.769 11.05 0.00 0.00 3.01
2229 4080 8.101419 ACTTCCTCCGTTCTTAAATATTTGTCT 58.899 33.333 11.05 0.00 0.00 3.41
2230 4081 8.265165 ACTTCCTCCGTTCTTAAATATTTGTC 57.735 34.615 11.05 0.00 0.00 3.18
2231 4082 9.159364 GTACTTCCTCCGTTCTTAAATATTTGT 57.841 33.333 11.05 0.00 0.00 2.83
2232 4083 9.379791 AGTACTTCCTCCGTTCTTAAATATTTG 57.620 33.333 11.05 0.00 0.00 2.32
2233 4084 9.379791 CAGTACTTCCTCCGTTCTTAAATATTT 57.620 33.333 5.89 5.89 0.00 1.40
2234 4085 7.985752 CCAGTACTTCCTCCGTTCTTAAATATT 59.014 37.037 0.00 0.00 0.00 1.28
2235 4086 7.125356 ACCAGTACTTCCTCCGTTCTTAAATAT 59.875 37.037 0.00 0.00 0.00 1.28
2236 4087 6.438425 ACCAGTACTTCCTCCGTTCTTAAATA 59.562 38.462 0.00 0.00 0.00 1.40
2237 4088 5.247792 ACCAGTACTTCCTCCGTTCTTAAAT 59.752 40.000 0.00 0.00 0.00 1.40
2238 4089 4.590222 ACCAGTACTTCCTCCGTTCTTAAA 59.410 41.667 0.00 0.00 0.00 1.52
2239 4090 4.154942 ACCAGTACTTCCTCCGTTCTTAA 58.845 43.478 0.00 0.00 0.00 1.85
2240 4091 3.771216 ACCAGTACTTCCTCCGTTCTTA 58.229 45.455 0.00 0.00 0.00 2.10
2241 4092 2.606378 ACCAGTACTTCCTCCGTTCTT 58.394 47.619 0.00 0.00 0.00 2.52
2242 4093 2.305858 ACCAGTACTTCCTCCGTTCT 57.694 50.000 0.00 0.00 0.00 3.01
2243 4094 3.509184 AGTAACCAGTACTTCCTCCGTTC 59.491 47.826 0.00 0.00 40.33 3.95
2244 4095 3.257624 CAGTAACCAGTACTTCCTCCGTT 59.742 47.826 0.00 0.00 41.37 4.44
2245 4096 2.824341 CAGTAACCAGTACTTCCTCCGT 59.176 50.000 0.00 0.00 41.37 4.69
2246 4097 2.416972 GCAGTAACCAGTACTTCCTCCG 60.417 54.545 0.00 0.00 41.37 4.63
2247 4098 2.832733 AGCAGTAACCAGTACTTCCTCC 59.167 50.000 0.00 0.00 41.37 4.30
2248 4099 4.538746 AAGCAGTAACCAGTACTTCCTC 57.461 45.455 0.00 0.00 41.37 3.71
2249 4100 4.222366 GGTAAGCAGTAACCAGTACTTCCT 59.778 45.833 0.00 0.00 41.37 3.36
2250 4101 4.020839 TGGTAAGCAGTAACCAGTACTTCC 60.021 45.833 0.00 0.00 41.37 3.46
2251 4102 4.928020 GTGGTAAGCAGTAACCAGTACTTC 59.072 45.833 0.00 0.00 46.19 3.01
2252 4103 4.262765 GGTGGTAAGCAGTAACCAGTACTT 60.263 45.833 0.00 0.00 46.19 2.24
2253 4104 3.260128 GGTGGTAAGCAGTAACCAGTACT 59.740 47.826 0.00 0.00 46.19 2.73
2254 4105 3.007182 TGGTGGTAAGCAGTAACCAGTAC 59.993 47.826 0.00 0.00 46.19 2.73
2255 4106 3.007182 GTGGTGGTAAGCAGTAACCAGTA 59.993 47.826 0.00 0.00 46.19 2.74
2256 4107 2.051692 TGGTGGTAAGCAGTAACCAGT 58.948 47.619 0.00 0.00 46.19 4.00
2257 4108 2.224426 TGTGGTGGTAAGCAGTAACCAG 60.224 50.000 0.00 0.00 46.19 4.00
2258 4109 1.769465 TGTGGTGGTAAGCAGTAACCA 59.231 47.619 0.00 0.00 43.47 3.67
2259 4110 2.554370 TGTGGTGGTAAGCAGTAACC 57.446 50.000 0.00 0.00 33.61 2.85
2300 4170 7.439655 GGTAATGTGTGTGCAAAATTTCCTTAA 59.560 33.333 0.00 0.00 0.00 1.85
2322 4192 6.449041 ACCATAGACCCCTTATTTCTTGGTAA 59.551 38.462 0.00 0.00 33.11 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.