Multiple sequence alignment - TraesCS4A01G165700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G165700 chr4A 100.000 4574 0 0 1 4574 396755826 396751253 0.000000e+00 8447.0
1 TraesCS4A01G165700 chr4D 94.104 3443 146 22 246 3637 134638779 134635343 0.000000e+00 5180.0
2 TraesCS4A01G165700 chr4D 91.720 157 13 0 3848 4004 4865179 4865335 7.700000e-53 219.0
3 TraesCS4A01G165700 chr4D 90.798 163 15 0 3848 4010 4888307 4888469 7.700000e-53 219.0
4 TraesCS4A01G165700 chr4D 82.573 241 39 3 3 242 11881861 11882099 4.640000e-50 209.0
5 TraesCS4A01G165700 chr4D 93.571 140 6 1 3711 3847 134635330 134635191 6.000000e-49 206.0
6 TraesCS4A01G165700 chr4D 85.227 176 26 0 67 242 11879325 11879150 1.010000e-41 182.0
7 TraesCS4A01G165700 chr4B 93.397 1575 46 16 2139 3704 193546146 193544621 0.000000e+00 2279.0
8 TraesCS4A01G165700 chr4B 95.345 1246 27 10 885 2109 193547473 193546238 0.000000e+00 1951.0
9 TraesCS4A01G165700 chr4B 90.311 578 43 9 4002 4574 591269332 591269901 0.000000e+00 745.0
10 TraesCS4A01G165700 chr4B 88.558 437 49 1 246 681 193548535 193548099 3.130000e-146 529.0
11 TraesCS4A01G165700 chr4B 91.515 165 12 2 726 890 193548114 193547952 4.600000e-55 226.0
12 TraesCS4A01G165700 chr4B 92.035 113 9 0 3735 3847 193544489 193544377 4.740000e-35 159.0
13 TraesCS4A01G165700 chr7D 94.533 567 23 6 4010 4574 8874237 8873677 0.000000e+00 869.0
14 TraesCS4A01G165700 chr1D 93.322 569 29 4 4008 4574 19037878 19037317 0.000000e+00 832.0
15 TraesCS4A01G165700 chr1D 84.892 139 21 0 104 242 435804399 435804261 1.720000e-29 141.0
16 TraesCS4A01G165700 chr6D 93.122 567 29 4 4010 4574 346275756 346275198 0.000000e+00 822.0
17 TraesCS4A01G165700 chr6B 92.456 570 32 6 4008 4574 569888484 569889045 0.000000e+00 804.0
18 TraesCS4A01G165700 chr5B 92.443 569 34 5 4008 4574 511343551 511344112 0.000000e+00 804.0
19 TraesCS4A01G165700 chr5B 89.600 250 25 1 4003 4251 693198747 693198498 2.660000e-82 316.0
20 TraesCS4A01G165700 chr1A 92.416 567 38 4 4010 4574 28766067 28765504 0.000000e+00 804.0
21 TraesCS4A01G165700 chr5A 92.416 567 35 5 4010 4574 705600136 705600696 0.000000e+00 802.0
22 TraesCS4A01G165700 chr5A 89.492 571 48 4 4006 4574 119847346 119846786 0.000000e+00 712.0
23 TraesCS4A01G165700 chr7B 91.986 574 38 7 4007 4574 579479636 579480207 0.000000e+00 798.0
24 TraesCS4A01G165700 chr7B 75.000 244 54 5 3 242 75510266 75510026 6.260000e-19 106.0
25 TraesCS4A01G165700 chr3A 90.451 576 43 4 4002 4574 678321189 678321755 0.000000e+00 749.0
26 TraesCS4A01G165700 chr3A 90.303 165 14 2 3848 4010 565814004 565813840 9.970000e-52 215.0
27 TraesCS4A01G165700 chr3A 82.128 235 42 0 8 242 522237416 522237650 7.760000e-48 202.0
28 TraesCS4A01G165700 chr3B 90.068 584 44 7 3993 4574 27230139 27230710 0.000000e+00 745.0
29 TraesCS4A01G165700 chr7A 89.501 581 45 6 4001 4574 133624517 133623946 0.000000e+00 721.0
30 TraesCS4A01G165700 chr7A 89.697 165 15 2 3848 4010 357962866 357963030 4.640000e-50 209.0
31 TraesCS4A01G165700 chrUn 89.199 574 50 11 4007 4574 1911776 1911209 0.000000e+00 706.0
32 TraesCS4A01G165700 chrUn 83.419 585 76 10 4001 4574 17893110 17893684 1.460000e-144 523.0
33 TraesCS4A01G165700 chr1B 82.253 586 79 12 3987 4558 573388708 573389282 2.470000e-132 483.0
34 TraesCS4A01G165700 chr6A 92.121 165 11 2 3848 4010 322165458 322165294 9.900000e-57 231.0
35 TraesCS4A01G165700 chr6A 82.845 239 35 5 8 242 73382058 73382294 4.640000e-50 209.0
36 TraesCS4A01G165700 chr6A 89.697 165 15 1 3848 4010 199429209 199429045 4.640000e-50 209.0
37 TraesCS4A01G165700 chr6A 82.845 239 35 5 8 242 597332460 597332696 4.640000e-50 209.0
38 TraesCS4A01G165700 chr6A 80.597 134 25 1 92 225 255713889 255714021 8.100000e-18 102.0
39 TraesCS4A01G165700 chr5D 90.909 165 12 3 3848 4010 467859362 467859525 7.700000e-53 219.0
40 TraesCS4A01G165700 chr5D 100.000 28 0 0 857 884 498686149 498686122 8.000000e-03 52.8
41 TraesCS4A01G165700 chr2A 89.881 168 13 3 3847 4010 569814559 569814726 3.580000e-51 213.0
42 TraesCS4A01G165700 chr2A 82.427 239 36 6 8 242 187948587 187948351 2.160000e-48 204.0
43 TraesCS4A01G165700 chr2D 89.820 167 12 5 3848 4010 192650046 192650211 4.640000e-50 209.0
44 TraesCS4A01G165700 chr2D 79.577 142 23 5 104 242 350767857 350767719 3.770000e-16 97.1
45 TraesCS4A01G165700 chr3D 81.377 247 38 5 3 243 463088180 463087936 1.300000e-45 195.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G165700 chr4A 396751253 396755826 4573 True 8447.0 8447 100.0000 1 4574 1 chr4A.!!$R1 4573
1 TraesCS4A01G165700 chr4D 134635191 134638779 3588 True 2693.0 5180 93.8375 246 3847 2 chr4D.!!$R2 3601
2 TraesCS4A01G165700 chr4B 193544377 193548535 4158 True 1028.8 2279 92.1700 246 3847 5 chr4B.!!$R1 3601
3 TraesCS4A01G165700 chr4B 591269332 591269901 569 False 745.0 745 90.3110 4002 4574 1 chr4B.!!$F1 572
4 TraesCS4A01G165700 chr7D 8873677 8874237 560 True 869.0 869 94.5330 4010 4574 1 chr7D.!!$R1 564
5 TraesCS4A01G165700 chr1D 19037317 19037878 561 True 832.0 832 93.3220 4008 4574 1 chr1D.!!$R1 566
6 TraesCS4A01G165700 chr6D 346275198 346275756 558 True 822.0 822 93.1220 4010 4574 1 chr6D.!!$R1 564
7 TraesCS4A01G165700 chr6B 569888484 569889045 561 False 804.0 804 92.4560 4008 4574 1 chr6B.!!$F1 566
8 TraesCS4A01G165700 chr5B 511343551 511344112 561 False 804.0 804 92.4430 4008 4574 1 chr5B.!!$F1 566
9 TraesCS4A01G165700 chr1A 28765504 28766067 563 True 804.0 804 92.4160 4010 4574 1 chr1A.!!$R1 564
10 TraesCS4A01G165700 chr5A 705600136 705600696 560 False 802.0 802 92.4160 4010 4574 1 chr5A.!!$F1 564
11 TraesCS4A01G165700 chr5A 119846786 119847346 560 True 712.0 712 89.4920 4006 4574 1 chr5A.!!$R1 568
12 TraesCS4A01G165700 chr7B 579479636 579480207 571 False 798.0 798 91.9860 4007 4574 1 chr7B.!!$F1 567
13 TraesCS4A01G165700 chr3A 678321189 678321755 566 False 749.0 749 90.4510 4002 4574 1 chr3A.!!$F2 572
14 TraesCS4A01G165700 chr3B 27230139 27230710 571 False 745.0 745 90.0680 3993 4574 1 chr3B.!!$F1 581
15 TraesCS4A01G165700 chr7A 133623946 133624517 571 True 721.0 721 89.5010 4001 4574 1 chr7A.!!$R1 573
16 TraesCS4A01G165700 chrUn 1911209 1911776 567 True 706.0 706 89.1990 4007 4574 1 chrUn.!!$R1 567
17 TraesCS4A01G165700 chrUn 17893110 17893684 574 False 523.0 523 83.4190 4001 4574 1 chrUn.!!$F1 573
18 TraesCS4A01G165700 chr1B 573388708 573389282 574 False 483.0 483 82.2530 3987 4558 1 chr1B.!!$F1 571

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
475 476 0.027455 CGAAGTTGTTGTTGCTGCGA 59.973 50.0 0.00 0.00 33.38 5.10 F
840 845 0.179032 AATGCAGTGTCGTTGGTCCA 60.179 50.0 0.00 0.00 0.00 4.02 F
883 888 0.308993 GATGATTTGTAGCAGCGCCC 59.691 55.0 2.29 0.00 0.00 6.13 F
2305 2879 0.390472 GCCGAAGTAAGCTGCTGTCT 60.390 55.0 1.35 1.65 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1872 2381 0.550914 ACAACTGCAAACCTCTCCCA 59.449 50.000 0.0 0.0 0.00 4.37 R
2572 3155 0.250727 GCAAGAACCACTAGCCCACA 60.251 55.000 0.0 0.0 0.00 4.17 R
2724 3307 3.181437 ACCGTAATCAGAAAAACCAGGGT 60.181 43.478 0.0 0.0 0.00 4.34 R
3975 4685 0.105607 GAACCCTAGATCCCCTCGGT 60.106 60.000 0.0 0.0 31.07 4.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.751047 CCAGCAAAAGAATTGTGAGATATTG 57.249 36.000 0.00 0.00 0.00 1.90
25 26 7.541162 CCAGCAAAAGAATTGTGAGATATTGA 58.459 34.615 0.00 0.00 0.00 2.57
26 27 8.195436 CCAGCAAAAGAATTGTGAGATATTGAT 58.805 33.333 0.00 0.00 0.00 2.57
48 49 9.725019 TTGATAGTTCTAATTGACTGTTGATGT 57.275 29.630 0.00 0.00 0.00 3.06
49 50 9.154847 TGATAGTTCTAATTGACTGTTGATGTG 57.845 33.333 0.00 0.00 0.00 3.21
50 51 6.808008 AGTTCTAATTGACTGTTGATGTGG 57.192 37.500 0.00 0.00 0.00 4.17
51 52 5.182001 AGTTCTAATTGACTGTTGATGTGGC 59.818 40.000 0.00 0.00 0.00 5.01
52 53 4.009675 TCTAATTGACTGTTGATGTGGCC 58.990 43.478 0.00 0.00 0.00 5.36
53 54 1.167851 ATTGACTGTTGATGTGGCCG 58.832 50.000 0.00 0.00 0.00 6.13
54 55 0.179032 TTGACTGTTGATGTGGCCGT 60.179 50.000 0.00 0.00 0.00 5.68
55 56 0.179032 TGACTGTTGATGTGGCCGTT 60.179 50.000 0.00 0.00 0.00 4.44
56 57 0.951558 GACTGTTGATGTGGCCGTTT 59.048 50.000 0.00 0.00 0.00 3.60
57 58 1.336755 GACTGTTGATGTGGCCGTTTT 59.663 47.619 0.00 0.00 0.00 2.43
58 59 1.754226 ACTGTTGATGTGGCCGTTTTT 59.246 42.857 0.00 0.00 0.00 1.94
78 79 5.769484 TTTTTGCCATCGGTGTACTTAAA 57.231 34.783 0.00 0.00 0.00 1.52
79 80 5.769484 TTTTGCCATCGGTGTACTTAAAA 57.231 34.783 0.00 0.00 0.00 1.52
80 81 5.769484 TTTGCCATCGGTGTACTTAAAAA 57.231 34.783 0.00 0.00 0.00 1.94
81 82 4.752661 TGCCATCGGTGTACTTAAAAAC 57.247 40.909 0.00 0.00 0.00 2.43
82 83 4.391155 TGCCATCGGTGTACTTAAAAACT 58.609 39.130 0.00 0.00 0.00 2.66
83 84 4.214545 TGCCATCGGTGTACTTAAAAACTG 59.785 41.667 0.00 0.00 0.00 3.16
84 85 4.379082 GCCATCGGTGTACTTAAAAACTGG 60.379 45.833 0.00 0.00 0.00 4.00
85 86 4.998672 CCATCGGTGTACTTAAAAACTGGA 59.001 41.667 0.00 0.00 0.00 3.86
86 87 5.646360 CCATCGGTGTACTTAAAAACTGGAT 59.354 40.000 0.00 0.00 0.00 3.41
87 88 6.183360 CCATCGGTGTACTTAAAAACTGGATC 60.183 42.308 0.00 0.00 0.00 3.36
88 89 5.856156 TCGGTGTACTTAAAAACTGGATCA 58.144 37.500 0.00 0.00 0.00 2.92
89 90 6.289834 TCGGTGTACTTAAAAACTGGATCAA 58.710 36.000 0.00 0.00 0.00 2.57
90 91 6.425721 TCGGTGTACTTAAAAACTGGATCAAG 59.574 38.462 0.00 0.00 0.00 3.02
91 92 6.204108 CGGTGTACTTAAAAACTGGATCAAGT 59.796 38.462 0.00 0.00 0.00 3.16
92 93 7.255001 CGGTGTACTTAAAAACTGGATCAAGTT 60.255 37.037 9.87 9.87 42.21 2.66
93 94 7.860872 GGTGTACTTAAAAACTGGATCAAGTTG 59.139 37.037 16.39 6.03 40.28 3.16
94 95 8.403236 GTGTACTTAAAAACTGGATCAAGTTGT 58.597 33.333 16.39 8.14 40.28 3.32
95 96 8.962679 TGTACTTAAAAACTGGATCAAGTTGTT 58.037 29.630 20.09 20.09 40.28 2.83
98 99 8.630037 ACTTAAAAACTGGATCAAGTTGTTAGG 58.370 33.333 23.97 23.97 39.73 2.69
99 100 8.754991 TTAAAAACTGGATCAAGTTGTTAGGA 57.245 30.769 20.31 8.77 39.73 2.94
100 101 7.654022 AAAAACTGGATCAAGTTGTTAGGAA 57.346 32.000 15.70 0.00 40.28 3.36
101 102 7.839680 AAAACTGGATCAAGTTGTTAGGAAT 57.160 32.000 16.39 0.00 40.28 3.01
102 103 7.454260 AAACTGGATCAAGTTGTTAGGAATC 57.546 36.000 16.39 0.00 40.28 2.52
103 104 5.178797 ACTGGATCAAGTTGTTAGGAATCG 58.821 41.667 0.00 0.00 0.00 3.34
104 105 5.160607 TGGATCAAGTTGTTAGGAATCGT 57.839 39.130 2.11 0.00 0.00 3.73
105 106 4.935205 TGGATCAAGTTGTTAGGAATCGTG 59.065 41.667 2.11 0.00 0.00 4.35
106 107 4.935808 GGATCAAGTTGTTAGGAATCGTGT 59.064 41.667 2.11 0.00 0.00 4.49
107 108 5.063564 GGATCAAGTTGTTAGGAATCGTGTC 59.936 44.000 2.11 0.00 0.00 3.67
108 109 4.951254 TCAAGTTGTTAGGAATCGTGTCA 58.049 39.130 2.11 0.00 0.00 3.58
109 110 5.361427 TCAAGTTGTTAGGAATCGTGTCAA 58.639 37.500 2.11 0.00 0.00 3.18
110 111 5.235616 TCAAGTTGTTAGGAATCGTGTCAAC 59.764 40.000 2.11 13.00 35.45 3.18
111 112 4.699637 AGTTGTTAGGAATCGTGTCAACA 58.300 39.130 18.68 6.71 36.97 3.33
112 113 4.510340 AGTTGTTAGGAATCGTGTCAACAC 59.490 41.667 18.68 3.13 43.15 3.32
113 114 4.061357 TGTTAGGAATCGTGTCAACACA 57.939 40.909 13.30 1.74 46.75 3.72
170 171 3.988459 GCGATATGCGGTGTTTTGT 57.012 47.368 0.00 0.00 41.29 2.83
171 172 1.534028 GCGATATGCGGTGTTTTGTG 58.466 50.000 0.00 0.00 41.29 3.33
172 173 1.534028 CGATATGCGGTGTTTTGTGC 58.466 50.000 0.00 0.00 36.03 4.57
173 174 1.135831 CGATATGCGGTGTTTTGTGCA 60.136 47.619 0.00 0.00 42.22 4.57
174 175 2.666895 CGATATGCGGTGTTTTGTGCAA 60.667 45.455 0.00 0.00 41.22 4.08
175 176 2.126914 TATGCGGTGTTTTGTGCAAC 57.873 45.000 0.00 0.00 41.22 4.17
190 191 4.104696 GTGCAACAAACCTGTAAAGTGT 57.895 40.909 0.00 0.00 33.45 3.55
191 192 3.857093 GTGCAACAAACCTGTAAAGTGTG 59.143 43.478 0.00 0.00 33.45 3.82
192 193 2.857748 GCAACAAACCTGTAAAGTGTGC 59.142 45.455 0.00 0.00 33.45 4.57
193 194 3.674682 GCAACAAACCTGTAAAGTGTGCA 60.675 43.478 0.00 0.00 33.45 4.57
194 195 4.681744 CAACAAACCTGTAAAGTGTGCAT 58.318 39.130 0.00 0.00 33.45 3.96
195 196 5.108517 CAACAAACCTGTAAAGTGTGCATT 58.891 37.500 0.00 0.00 33.45 3.56
196 197 5.337578 ACAAACCTGTAAAGTGTGCATTT 57.662 34.783 0.00 0.00 32.54 2.32
197 198 5.729510 ACAAACCTGTAAAGTGTGCATTTT 58.270 33.333 0.00 0.00 32.54 1.82
198 199 6.868622 ACAAACCTGTAAAGTGTGCATTTTA 58.131 32.000 0.00 0.00 32.54 1.52
199 200 7.496747 ACAAACCTGTAAAGTGTGCATTTTAT 58.503 30.769 0.00 0.00 32.54 1.40
200 201 7.437862 ACAAACCTGTAAAGTGTGCATTTTATG 59.562 33.333 0.00 1.03 32.54 1.90
223 224 8.807948 ATGCAACACTAGTATCAAAAATAGGT 57.192 30.769 0.00 0.00 0.00 3.08
224 225 8.039603 TGCAACACTAGTATCAAAAATAGGTG 57.960 34.615 0.00 0.00 0.00 4.00
225 226 7.120579 TGCAACACTAGTATCAAAAATAGGTGG 59.879 37.037 0.00 0.00 0.00 4.61
226 227 7.120726 GCAACACTAGTATCAAAAATAGGTGGT 59.879 37.037 0.00 0.00 0.00 4.16
227 228 9.010029 CAACACTAGTATCAAAAATAGGTGGTT 57.990 33.333 0.00 0.00 0.00 3.67
228 229 9.582648 AACACTAGTATCAAAAATAGGTGGTTT 57.417 29.630 0.00 0.00 0.00 3.27
229 230 9.010029 ACACTAGTATCAAAAATAGGTGGTTTG 57.990 33.333 0.00 0.00 34.29 2.93
230 231 9.010029 CACTAGTATCAAAAATAGGTGGTTTGT 57.990 33.333 0.00 0.00 34.55 2.83
231 232 9.010029 ACTAGTATCAAAAATAGGTGGTTTGTG 57.990 33.333 0.00 0.00 34.55 3.33
232 233 6.687604 AGTATCAAAAATAGGTGGTTTGTGC 58.312 36.000 0.00 0.00 34.55 4.57
233 234 5.543507 ATCAAAAATAGGTGGTTTGTGCA 57.456 34.783 0.00 0.00 34.55 4.57
234 235 5.344743 TCAAAAATAGGTGGTTTGTGCAA 57.655 34.783 0.00 0.00 34.55 4.08
235 236 5.923204 TCAAAAATAGGTGGTTTGTGCAAT 58.077 33.333 0.00 0.00 34.55 3.56
236 237 6.352516 TCAAAAATAGGTGGTTTGTGCAATT 58.647 32.000 0.00 0.00 34.55 2.32
237 238 6.825721 TCAAAAATAGGTGGTTTGTGCAATTT 59.174 30.769 0.00 0.00 34.55 1.82
238 239 7.337942 TCAAAAATAGGTGGTTTGTGCAATTTT 59.662 29.630 0.00 0.00 34.55 1.82
239 240 6.859420 AAATAGGTGGTTTGTGCAATTTTC 57.141 33.333 0.00 0.00 0.00 2.29
240 241 5.806654 ATAGGTGGTTTGTGCAATTTTCT 57.193 34.783 0.00 0.00 0.00 2.52
241 242 4.058721 AGGTGGTTTGTGCAATTTTCTC 57.941 40.909 0.00 0.00 0.00 2.87
242 243 3.450457 AGGTGGTTTGTGCAATTTTCTCA 59.550 39.130 0.00 0.00 0.00 3.27
243 244 4.081198 AGGTGGTTTGTGCAATTTTCTCAA 60.081 37.500 0.00 0.00 0.00 3.02
244 245 4.633565 GGTGGTTTGTGCAATTTTCTCAAA 59.366 37.500 0.00 0.00 0.00 2.69
260 261 0.254747 CAAATAAGCCCCGTCCCTCA 59.745 55.000 0.00 0.00 0.00 3.86
301 302 3.657350 CCCACCCCACCGTCCATT 61.657 66.667 0.00 0.00 0.00 3.16
331 332 0.528470 CTTTTCTCTCTCGGCCGAGT 59.472 55.000 44.61 0.00 42.49 4.18
355 356 3.835395 AGTCGTCTTCTTCCTTCCAATCT 59.165 43.478 0.00 0.00 0.00 2.40
384 385 1.650528 CCTGACACCCTTCTCCTCTT 58.349 55.000 0.00 0.00 0.00 2.85
385 386 1.552792 CCTGACACCCTTCTCCTCTTC 59.447 57.143 0.00 0.00 0.00 2.87
411 412 3.054948 CCAAAATCCAATCAGCAACCCAT 60.055 43.478 0.00 0.00 0.00 4.00
421 422 1.005215 CAGCAACCCATCTCTTCCCTT 59.995 52.381 0.00 0.00 0.00 3.95
432 433 1.560146 CTCTTCCCTTTCCCCTACACC 59.440 57.143 0.00 0.00 0.00 4.16
434 435 0.847758 TTCCCTTTCCCCTACACCCC 60.848 60.000 0.00 0.00 0.00 4.95
464 465 3.883744 CTCCCAGCGGCGAAGTTGT 62.884 63.158 12.98 0.00 0.00 3.32
467 468 2.542907 CCAGCGGCGAAGTTGTTGT 61.543 57.895 12.98 0.00 0.00 3.32
471 472 1.355210 CGGCGAAGTTGTTGTTGCT 59.645 52.632 0.00 0.00 0.00 3.91
475 476 0.027455 CGAAGTTGTTGTTGCTGCGA 59.973 50.000 0.00 0.00 33.38 5.10
477 478 0.808125 AAGTTGTTGTTGCTGCGACA 59.192 45.000 18.49 18.49 0.00 4.35
526 527 1.658686 GGGGTTGTTGCGTTGTGACA 61.659 55.000 0.00 0.00 0.00 3.58
533 534 2.742589 TGTTGCGTTGTGACAACTGTTA 59.257 40.909 24.09 6.77 45.07 2.41
549 551 6.145048 ACAACTGTTATTTTTAGGACGACGAG 59.855 38.462 0.00 0.00 0.00 4.18
554 556 4.923264 ATTTTTAGGACGACGAGAAAGC 57.077 40.909 0.00 0.00 0.00 3.51
582 584 2.222027 GATGTTCCAATTAGGGGCTCG 58.778 52.381 0.00 0.00 38.24 5.03
592 596 0.322187 TAGGGGCTCGCCAGTTTTTC 60.322 55.000 10.51 0.00 37.98 2.29
598 602 1.336240 GCTCGCCAGTTTTTCTTGCAT 60.336 47.619 0.00 0.00 34.93 3.96
606 610 5.716094 CCAGTTTTTCTTGCATCATCATCA 58.284 37.500 0.00 0.00 0.00 3.07
610 614 7.330946 CAGTTTTTCTTGCATCATCATCATTGT 59.669 33.333 0.00 0.00 0.00 2.71
774 779 0.320683 CCAGTCCGACAACATGAGCA 60.321 55.000 0.00 0.00 0.00 4.26
811 816 1.482182 TGGCGACTATTCTGCTGTGAT 59.518 47.619 0.00 0.00 0.00 3.06
840 845 0.179032 AATGCAGTGTCGTTGGTCCA 60.179 50.000 0.00 0.00 0.00 4.02
849 854 2.589442 GTTGGTCCAACGGCGTGA 60.589 61.111 18.84 4.21 34.63 4.35
852 857 2.029964 GGTCCAACGGCGTGAGAA 59.970 61.111 15.70 0.00 0.00 2.87
883 888 0.308993 GATGATTTGTAGCAGCGCCC 59.691 55.000 2.29 0.00 0.00 6.13
997 1486 0.482887 CAAAACCCAGGAACCCCTCT 59.517 55.000 0.00 0.00 42.02 3.69
1541 2042 2.094752 CGTAGCTTTGGTTGATTTGGGG 60.095 50.000 0.00 0.00 0.00 4.96
1544 2045 1.336795 GCTTTGGTTGATTTGGGGACG 60.337 52.381 0.00 0.00 0.00 4.79
1602 2103 7.710044 TGTTGACGAGTTTGTAGGTTTACATTA 59.290 33.333 0.00 0.00 39.43 1.90
1618 2119 7.488150 GGTTTACATTATGCTTTGCTTCTTACC 59.512 37.037 0.00 0.00 0.00 2.85
1682 2183 8.504005 GCTTCTTTCAAATAGTGCTGTAGTTTA 58.496 33.333 0.00 0.00 0.00 2.01
1685 2194 9.332502 TCTTTCAAATAGTGCTGTAGTTTAACA 57.667 29.630 0.00 0.00 0.00 2.41
1691 2200 5.399604 AGTGCTGTAGTTTAACAACGTTC 57.600 39.130 0.00 0.00 38.03 3.95
1829 2338 1.094785 CCACGGGTCCAATTTGCTAG 58.905 55.000 0.00 0.00 0.00 3.42
1850 2359 7.286087 TGCTAGAATAAGCCATTGATGATTTGT 59.714 33.333 0.00 0.00 42.05 2.83
1862 2371 6.421377 TTGATGATTTGTGTGTATCCGAAG 57.579 37.500 0.00 0.00 0.00 3.79
1872 2381 5.359860 TGTGTGTATCCGAAGATCATGTAGT 59.640 40.000 0.00 0.00 33.67 2.73
1964 2473 7.283329 CCAGCCTTGTCTTCTATTTTAGGTAT 58.717 38.462 0.00 0.00 0.00 2.73
2029 2538 1.699634 ACTTGGTTAGAGGCTGCAAGA 59.300 47.619 0.50 0.00 34.07 3.02
2094 2606 9.726232 CTACGCTATGAAGTTTATGTTGTACTA 57.274 33.333 0.00 0.00 0.00 1.82
2173 2747 8.782137 AGCAGATAATTGTGGGGTTAAATTAT 57.218 30.769 0.00 0.00 38.54 1.28
2175 2749 9.830975 GCAGATAATTGTGGGGTTAAATTATTT 57.169 29.630 0.00 0.00 36.88 1.40
2261 2835 7.145932 ACTTACATAGTCCACATTTGAAAGC 57.854 36.000 0.00 0.00 28.23 3.51
2300 2874 0.804989 AATGTGCCGAAGTAAGCTGC 59.195 50.000 0.00 0.00 0.00 5.25
2305 2879 0.390472 GCCGAAGTAAGCTGCTGTCT 60.390 55.000 1.35 1.65 0.00 3.41
2412 2992 1.597742 TCACTGCTTCTTGCTGGAAC 58.402 50.000 0.00 0.00 43.66 3.62
2490 3070 7.724305 ACGAATGTGTACTTTACTTTGACAT 57.276 32.000 0.00 0.00 0.00 3.06
2563 3146 9.219603 ACATGATTTTATTCCATATACAGTCGG 57.780 33.333 0.00 0.00 0.00 4.79
2587 3170 5.914898 ATATTTTTGTGGGCTAGTGGTTC 57.085 39.130 0.00 0.00 0.00 3.62
2640 3223 6.183360 CGTAATCAACATATGCCACTTTGTCT 60.183 38.462 1.58 0.00 0.00 3.41
2659 3242 9.653287 CTTTGTCTGAAACCTTGACTATGTATA 57.347 33.333 0.00 0.00 0.00 1.47
2724 3307 7.989416 ACGAAGGAAACCTGTGAATTAATTA 57.011 32.000 0.00 0.00 32.13 1.40
2762 3354 7.702386 TGATTACGGTGGAATCAATTTGTATG 58.298 34.615 2.00 0.00 39.71 2.39
2786 3392 7.660112 TGCACTTGTCAAATAACAGATGAATT 58.340 30.769 0.00 0.00 0.00 2.17
3480 4086 2.416547 CCTCTGTTATTGCCGTCTGTTG 59.583 50.000 0.00 0.00 0.00 3.33
3521 4127 0.530744 ACGATGCTGACTAAAGCCGA 59.469 50.000 0.00 0.00 42.83 5.54
3639 4245 1.282875 GCCTCTTGCGTGGTTTGTC 59.717 57.895 0.00 0.00 0.00 3.18
3647 4253 0.025001 GCGTGGTTTGTCGATCATCG 59.975 55.000 0.00 0.00 42.10 3.84
3670 4276 4.389687 GGAACTTACCGCACGAATTTAAGA 59.610 41.667 0.00 0.00 0.00 2.10
3671 4277 4.916099 ACTTACCGCACGAATTTAAGAC 57.084 40.909 0.00 0.00 0.00 3.01
3672 4278 4.563061 ACTTACCGCACGAATTTAAGACT 58.437 39.130 0.00 0.00 0.00 3.24
3673 4279 5.713025 ACTTACCGCACGAATTTAAGACTA 58.287 37.500 0.00 0.00 0.00 2.59
3674 4280 6.158598 ACTTACCGCACGAATTTAAGACTAA 58.841 36.000 0.00 0.00 0.00 2.24
3675 4281 6.309737 ACTTACCGCACGAATTTAAGACTAAG 59.690 38.462 0.00 0.00 0.00 2.18
3680 4286 7.332678 ACCGCACGAATTTAAGACTAAGTTATT 59.667 33.333 0.00 0.00 0.00 1.40
3682 4288 9.537848 CGCACGAATTTAAGACTAAGTTATTTT 57.462 29.630 0.00 0.00 0.00 1.82
3744 4420 4.699925 TTAGCTCAGTTAACACCCACTT 57.300 40.909 8.61 0.00 0.00 3.16
3822 4532 2.113139 CCGTGGGGTTTGTCAGCT 59.887 61.111 0.00 0.00 0.00 4.24
3847 4557 1.196766 TGCTCTCCATGTGGCAGAGT 61.197 55.000 20.00 0.00 36.75 3.24
3848 4558 0.035630 GCTCTCCATGTGGCAGAGTT 60.036 55.000 20.00 0.00 36.75 3.01
3849 4559 1.735386 CTCTCCATGTGGCAGAGTTG 58.265 55.000 14.91 0.00 34.44 3.16
3850 4560 1.277273 CTCTCCATGTGGCAGAGTTGA 59.723 52.381 14.91 0.00 34.44 3.18
3851 4561 1.911357 TCTCCATGTGGCAGAGTTGAT 59.089 47.619 0.00 0.00 34.44 2.57
3852 4562 2.014857 CTCCATGTGGCAGAGTTGATG 58.985 52.381 0.00 0.00 34.44 3.07
3853 4563 1.629861 TCCATGTGGCAGAGTTGATGA 59.370 47.619 0.00 0.00 34.44 2.92
3854 4564 2.040145 TCCATGTGGCAGAGTTGATGAA 59.960 45.455 0.00 0.00 34.44 2.57
3855 4565 3.021695 CCATGTGGCAGAGTTGATGAAT 58.978 45.455 0.00 0.00 0.00 2.57
3856 4566 4.080413 TCCATGTGGCAGAGTTGATGAATA 60.080 41.667 0.00 0.00 34.44 1.75
3857 4567 4.825634 CCATGTGGCAGAGTTGATGAATAT 59.174 41.667 0.00 0.00 0.00 1.28
3858 4568 5.278315 CCATGTGGCAGAGTTGATGAATATG 60.278 44.000 0.00 0.00 0.00 1.78
3859 4569 5.101648 TGTGGCAGAGTTGATGAATATGA 57.898 39.130 0.00 0.00 0.00 2.15
3860 4570 5.121105 TGTGGCAGAGTTGATGAATATGAG 58.879 41.667 0.00 0.00 0.00 2.90
3861 4571 5.121811 GTGGCAGAGTTGATGAATATGAGT 58.878 41.667 0.00 0.00 0.00 3.41
3862 4572 5.007430 GTGGCAGAGTTGATGAATATGAGTG 59.993 44.000 0.00 0.00 0.00 3.51
3863 4573 5.121811 GGCAGAGTTGATGAATATGAGTGT 58.878 41.667 0.00 0.00 0.00 3.55
3864 4574 5.587844 GGCAGAGTTGATGAATATGAGTGTT 59.412 40.000 0.00 0.00 0.00 3.32
3865 4575 6.763135 GGCAGAGTTGATGAATATGAGTGTTA 59.237 38.462 0.00 0.00 0.00 2.41
3866 4576 7.443575 GGCAGAGTTGATGAATATGAGTGTTAT 59.556 37.037 0.00 0.00 0.00 1.89
3867 4577 9.481340 GCAGAGTTGATGAATATGAGTGTTATA 57.519 33.333 0.00 0.00 0.00 0.98
3882 4592 8.589701 TGAGTGTTATAAGAGTTCATCTACCA 57.410 34.615 0.00 0.00 37.23 3.25
3883 4593 8.467598 TGAGTGTTATAAGAGTTCATCTACCAC 58.532 37.037 0.00 0.00 37.23 4.16
3884 4594 7.481642 AGTGTTATAAGAGTTCATCTACCACG 58.518 38.462 0.00 0.00 37.23 4.94
3885 4595 7.338703 AGTGTTATAAGAGTTCATCTACCACGA 59.661 37.037 0.00 0.00 37.23 4.35
3886 4596 7.644551 GTGTTATAAGAGTTCATCTACCACGAG 59.355 40.741 0.00 0.00 37.23 4.18
3887 4597 7.555195 TGTTATAAGAGTTCATCTACCACGAGA 59.445 37.037 0.00 0.00 37.23 4.04
3888 4598 8.569641 GTTATAAGAGTTCATCTACCACGAGAT 58.430 37.037 0.00 0.00 37.23 2.75
3889 4599 5.508200 AAGAGTTCATCTACCACGAGATC 57.492 43.478 0.00 0.00 37.23 2.75
3890 4600 3.562141 AGAGTTCATCTACCACGAGATCG 59.438 47.826 0.00 0.00 40.24 3.69
3891 4601 4.924134 AGAGTTCATCTACCACGAGATCGT 60.924 45.833 1.23 1.23 45.34 3.73
3892 4602 5.684291 AGAGTTCATCTACCACGAGATCGTA 60.684 44.000 7.67 0.00 43.62 3.43
3893 4603 7.129539 AGAGTTCATCTACCACGAGATCGTAA 61.130 42.308 7.67 0.00 43.62 3.18
3894 4604 8.384685 AGAGTTCATCTACCACGAGATCGTAAT 61.385 40.741 7.67 1.90 43.62 1.89
3907 4617 7.499438 CGAGATCGTAATGGCTAAAATCTAG 57.501 40.000 0.00 0.00 34.11 2.43
3908 4618 7.306213 CGAGATCGTAATGGCTAAAATCTAGA 58.694 38.462 0.00 0.00 34.11 2.43
3909 4619 7.808381 CGAGATCGTAATGGCTAAAATCTAGAA 59.192 37.037 0.00 0.00 34.11 2.10
3910 4620 9.134734 GAGATCGTAATGGCTAAAATCTAGAAG 57.865 37.037 0.00 0.00 0.00 2.85
3911 4621 8.643324 AGATCGTAATGGCTAAAATCTAGAAGT 58.357 33.333 0.00 0.00 0.00 3.01
3912 4622 8.819643 ATCGTAATGGCTAAAATCTAGAAGTC 57.180 34.615 0.00 0.00 0.00 3.01
3913 4623 8.008513 TCGTAATGGCTAAAATCTAGAAGTCT 57.991 34.615 0.00 0.00 0.00 3.24
3914 4624 9.128404 TCGTAATGGCTAAAATCTAGAAGTCTA 57.872 33.333 0.00 0.00 0.00 2.59
3915 4625 9.400638 CGTAATGGCTAAAATCTAGAAGTCTAG 57.599 37.037 8.79 8.79 45.57 2.43
3930 4640 9.214957 CTAGAAGTCTAGACTGTATGACTATGG 57.785 40.741 25.83 4.29 46.80 2.74
3931 4641 7.579105 AGAAGTCTAGACTGTATGACTATGGT 58.421 38.462 25.83 5.38 41.58 3.55
3932 4642 7.717875 AGAAGTCTAGACTGTATGACTATGGTC 59.282 40.741 25.83 13.98 41.58 4.02
3933 4643 6.901300 AGTCTAGACTGTATGACTATGGTCA 58.099 40.000 24.62 14.80 46.78 4.02
3963 4673 2.572209 TTTCAAACTAACCCCTCCGG 57.428 50.000 0.00 0.00 37.81 5.14
3974 4684 2.263545 ACCCCTCCGGTTTATATAGGC 58.736 52.381 0.00 0.00 45.36 3.93
3975 4685 2.262637 CCCCTCCGGTTTATATAGGCA 58.737 52.381 0.00 0.00 0.00 4.75
3976 4686 2.027469 CCCCTCCGGTTTATATAGGCAC 60.027 54.545 0.00 0.00 0.00 5.01
3977 4687 2.027469 CCCTCCGGTTTATATAGGCACC 60.027 54.545 0.00 0.00 0.00 5.01
3982 4692 3.329929 GGTTTATATAGGCACCGAGGG 57.670 52.381 0.00 0.00 0.00 4.30
3983 4693 2.027469 GGTTTATATAGGCACCGAGGGG 60.027 54.545 0.00 0.00 40.11 4.79
3984 4694 2.901839 GTTTATATAGGCACCGAGGGGA 59.098 50.000 0.00 0.00 36.97 4.81
3985 4695 3.484953 TTATATAGGCACCGAGGGGAT 57.515 47.619 0.00 0.00 36.97 3.85
3992 4702 1.233369 CACCGAGGGGATCTAGGGT 59.767 63.158 0.00 0.00 41.84 4.34
3996 4706 1.041437 CGAGGGGATCTAGGGTTCAC 58.959 60.000 0.00 0.00 0.00 3.18
3999 4709 3.754172 CGAGGGGATCTAGGGTTCACATA 60.754 52.174 0.00 0.00 0.00 2.29
4045 4756 1.457831 GACCCTATCCTGTCCGCCT 60.458 63.158 0.00 0.00 0.00 5.52
4284 5015 0.904394 ACCCATTTGGCGCCATTTCT 60.904 50.000 33.25 12.50 37.83 2.52
4446 5203 0.744874 CGGAGGAGATCGCCAAGTTA 59.255 55.000 18.44 0.00 34.79 2.24
4454 5211 2.427453 AGATCGCCAAGTTAGACGTGAT 59.573 45.455 0.00 0.00 28.78 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.541162 TCAATATCTCACAATTCTTTTGCTGG 58.459 34.615 0.00 0.00 0.00 4.85
22 23 9.725019 ACATCAACAGTCAATTAGAACTATCAA 57.275 29.630 0.00 0.00 0.00 2.57
23 24 9.154847 CACATCAACAGTCAATTAGAACTATCA 57.845 33.333 0.00 0.00 0.00 2.15
24 25 8.607459 CCACATCAACAGTCAATTAGAACTATC 58.393 37.037 0.00 0.00 0.00 2.08
25 26 7.066284 GCCACATCAACAGTCAATTAGAACTAT 59.934 37.037 0.00 0.00 0.00 2.12
26 27 6.371548 GCCACATCAACAGTCAATTAGAACTA 59.628 38.462 0.00 0.00 0.00 2.24
27 28 5.182001 GCCACATCAACAGTCAATTAGAACT 59.818 40.000 0.00 0.00 0.00 3.01
28 29 5.393962 GCCACATCAACAGTCAATTAGAAC 58.606 41.667 0.00 0.00 0.00 3.01
29 30 4.458989 GGCCACATCAACAGTCAATTAGAA 59.541 41.667 0.00 0.00 0.00 2.10
30 31 4.009675 GGCCACATCAACAGTCAATTAGA 58.990 43.478 0.00 0.00 0.00 2.10
31 32 3.181507 CGGCCACATCAACAGTCAATTAG 60.182 47.826 2.24 0.00 0.00 1.73
32 33 2.746904 CGGCCACATCAACAGTCAATTA 59.253 45.455 2.24 0.00 0.00 1.40
33 34 1.541147 CGGCCACATCAACAGTCAATT 59.459 47.619 2.24 0.00 0.00 2.32
34 35 1.167851 CGGCCACATCAACAGTCAAT 58.832 50.000 2.24 0.00 0.00 2.57
35 36 0.179032 ACGGCCACATCAACAGTCAA 60.179 50.000 2.24 0.00 0.00 3.18
36 37 0.179032 AACGGCCACATCAACAGTCA 60.179 50.000 2.24 0.00 0.00 3.41
37 38 0.951558 AAACGGCCACATCAACAGTC 59.048 50.000 2.24 0.00 0.00 3.51
38 39 1.398692 AAAACGGCCACATCAACAGT 58.601 45.000 2.24 0.00 0.00 3.55
39 40 2.507339 AAAAACGGCCACATCAACAG 57.493 45.000 2.24 0.00 0.00 3.16
56 57 5.769484 TTTAAGTACACCGATGGCAAAAA 57.231 34.783 0.00 0.00 0.00 1.94
57 58 5.769484 TTTTAAGTACACCGATGGCAAAA 57.231 34.783 0.00 0.00 0.00 2.44
58 59 5.299782 AGTTTTTAAGTACACCGATGGCAAA 59.700 36.000 0.00 0.00 0.00 3.68
59 60 4.822896 AGTTTTTAAGTACACCGATGGCAA 59.177 37.500 0.00 0.00 0.00 4.52
60 61 4.214545 CAGTTTTTAAGTACACCGATGGCA 59.785 41.667 0.00 0.00 0.00 4.92
61 62 4.379082 CCAGTTTTTAAGTACACCGATGGC 60.379 45.833 0.00 0.00 0.00 4.40
62 63 4.998672 TCCAGTTTTTAAGTACACCGATGG 59.001 41.667 0.00 0.00 0.00 3.51
63 64 6.370442 TGATCCAGTTTTTAAGTACACCGATG 59.630 38.462 0.00 0.00 0.00 3.84
64 65 6.469410 TGATCCAGTTTTTAAGTACACCGAT 58.531 36.000 0.00 0.00 0.00 4.18
65 66 5.856156 TGATCCAGTTTTTAAGTACACCGA 58.144 37.500 0.00 0.00 0.00 4.69
66 67 6.204108 ACTTGATCCAGTTTTTAAGTACACCG 59.796 38.462 0.00 0.00 0.00 4.94
67 68 7.506328 ACTTGATCCAGTTTTTAAGTACACC 57.494 36.000 0.00 0.00 0.00 4.16
68 69 8.403236 ACAACTTGATCCAGTTTTTAAGTACAC 58.597 33.333 9.39 0.00 34.60 2.90
69 70 8.514330 ACAACTTGATCCAGTTTTTAAGTACA 57.486 30.769 9.39 0.00 34.60 2.90
72 73 8.630037 CCTAACAACTTGATCCAGTTTTTAAGT 58.370 33.333 15.31 6.72 34.60 2.24
73 74 8.846211 TCCTAACAACTTGATCCAGTTTTTAAG 58.154 33.333 15.31 11.37 34.60 1.85
74 75 8.754991 TCCTAACAACTTGATCCAGTTTTTAA 57.245 30.769 15.31 3.96 34.60 1.52
75 76 8.754991 TTCCTAACAACTTGATCCAGTTTTTA 57.245 30.769 9.39 12.29 34.60 1.52
76 77 7.654022 TTCCTAACAACTTGATCCAGTTTTT 57.346 32.000 9.39 11.84 34.60 1.94
77 78 7.308589 CGATTCCTAACAACTTGATCCAGTTTT 60.309 37.037 9.39 9.78 34.60 2.43
78 79 6.149474 CGATTCCTAACAACTTGATCCAGTTT 59.851 38.462 9.39 0.00 34.60 2.66
79 80 5.643777 CGATTCCTAACAACTTGATCCAGTT 59.356 40.000 6.37 6.37 37.49 3.16
80 81 5.178797 CGATTCCTAACAACTTGATCCAGT 58.821 41.667 0.00 0.00 0.00 4.00
81 82 5.063944 CACGATTCCTAACAACTTGATCCAG 59.936 44.000 0.00 0.00 0.00 3.86
82 83 4.935205 CACGATTCCTAACAACTTGATCCA 59.065 41.667 0.00 0.00 0.00 3.41
83 84 4.935808 ACACGATTCCTAACAACTTGATCC 59.064 41.667 0.00 0.00 0.00 3.36
84 85 5.637810 TGACACGATTCCTAACAACTTGATC 59.362 40.000 0.00 0.00 0.00 2.92
85 86 5.547465 TGACACGATTCCTAACAACTTGAT 58.453 37.500 0.00 0.00 0.00 2.57
86 87 4.951254 TGACACGATTCCTAACAACTTGA 58.049 39.130 0.00 0.00 0.00 3.02
87 88 5.007234 TGTTGACACGATTCCTAACAACTTG 59.993 40.000 0.00 0.00 37.56 3.16
88 89 5.007332 GTGTTGACACGATTCCTAACAACTT 59.993 40.000 0.00 0.00 37.10 2.66
89 90 4.510340 GTGTTGACACGATTCCTAACAACT 59.490 41.667 0.00 0.00 37.10 3.16
90 91 4.769215 GTGTTGACACGATTCCTAACAAC 58.231 43.478 0.00 0.00 37.10 3.32
152 153 1.534028 CACAAAACACCGCATATCGC 58.466 50.000 0.00 0.00 36.73 4.58
153 154 1.135831 TGCACAAAACACCGCATATCG 60.136 47.619 0.00 0.00 38.08 2.92
154 155 2.627863 TGCACAAAACACCGCATATC 57.372 45.000 0.00 0.00 0.00 1.63
155 156 2.035193 TGTTGCACAAAACACCGCATAT 59.965 40.909 0.00 0.00 35.16 1.78
156 157 1.405463 TGTTGCACAAAACACCGCATA 59.595 42.857 0.00 0.00 35.16 3.14
157 158 0.174389 TGTTGCACAAAACACCGCAT 59.826 45.000 0.00 0.00 35.16 4.73
158 159 0.038251 TTGTTGCACAAAACACCGCA 60.038 45.000 0.00 0.00 39.70 5.69
159 160 1.071605 TTTGTTGCACAAAACACCGC 58.928 45.000 10.67 0.00 44.23 5.68
166 167 4.926238 CACTTTACAGGTTTGTTGCACAAA 59.074 37.500 9.46 9.46 44.91 2.83
167 168 4.021894 ACACTTTACAGGTTTGTTGCACAA 60.022 37.500 0.00 0.00 38.76 3.33
168 169 3.508012 ACACTTTACAGGTTTGTTGCACA 59.492 39.130 0.00 0.00 38.76 4.57
169 170 3.857093 CACACTTTACAGGTTTGTTGCAC 59.143 43.478 0.00 0.00 38.76 4.57
170 171 3.674682 GCACACTTTACAGGTTTGTTGCA 60.675 43.478 0.00 0.00 38.76 4.08
171 172 2.857748 GCACACTTTACAGGTTTGTTGC 59.142 45.455 0.00 0.00 38.76 4.17
172 173 4.103365 TGCACACTTTACAGGTTTGTTG 57.897 40.909 0.00 0.00 38.76 3.33
173 174 5.337578 AATGCACACTTTACAGGTTTGTT 57.662 34.783 0.00 0.00 38.76 2.83
174 175 5.337578 AAATGCACACTTTACAGGTTTGT 57.662 34.783 0.00 0.00 41.39 2.83
175 176 7.786114 CATAAAATGCACACTTTACAGGTTTG 58.214 34.615 0.00 0.00 0.00 2.93
176 177 7.945033 CATAAAATGCACACTTTACAGGTTT 57.055 32.000 0.00 0.00 0.00 3.27
197 198 9.899661 ACCTATTTTTGATACTAGTGTTGCATA 57.100 29.630 5.39 0.00 0.00 3.14
198 199 8.677300 CACCTATTTTTGATACTAGTGTTGCAT 58.323 33.333 5.39 0.00 0.00 3.96
199 200 7.120579 CCACCTATTTTTGATACTAGTGTTGCA 59.879 37.037 5.39 0.00 0.00 4.08
200 201 7.120726 ACCACCTATTTTTGATACTAGTGTTGC 59.879 37.037 5.39 0.00 0.00 4.17
201 202 8.561738 ACCACCTATTTTTGATACTAGTGTTG 57.438 34.615 5.39 0.00 0.00 3.33
202 203 9.582648 AAACCACCTATTTTTGATACTAGTGTT 57.417 29.630 5.39 0.00 0.00 3.32
203 204 9.010029 CAAACCACCTATTTTTGATACTAGTGT 57.990 33.333 5.39 0.00 32.91 3.55
204 205 9.010029 ACAAACCACCTATTTTTGATACTAGTG 57.990 33.333 5.39 0.00 34.84 2.74
205 206 9.010029 CACAAACCACCTATTTTTGATACTAGT 57.990 33.333 0.00 0.00 34.84 2.57
206 207 7.968405 GCACAAACCACCTATTTTTGATACTAG 59.032 37.037 0.52 0.00 34.84 2.57
207 208 7.448777 TGCACAAACCACCTATTTTTGATACTA 59.551 33.333 0.52 0.00 34.84 1.82
208 209 6.266558 TGCACAAACCACCTATTTTTGATACT 59.733 34.615 0.52 0.00 34.84 2.12
209 210 6.451393 TGCACAAACCACCTATTTTTGATAC 58.549 36.000 0.52 0.00 34.84 2.24
210 211 6.656632 TGCACAAACCACCTATTTTTGATA 57.343 33.333 0.52 0.00 34.84 2.15
211 212 5.543507 TGCACAAACCACCTATTTTTGAT 57.456 34.783 0.52 0.00 34.84 2.57
212 213 5.344743 TTGCACAAACCACCTATTTTTGA 57.655 34.783 0.00 0.00 34.84 2.69
213 214 6.616774 AATTGCACAAACCACCTATTTTTG 57.383 33.333 0.00 0.00 36.49 2.44
214 215 7.555914 AGAAAATTGCACAAACCACCTATTTTT 59.444 29.630 0.00 0.00 0.00 1.94
215 216 7.053498 AGAAAATTGCACAAACCACCTATTTT 58.947 30.769 0.00 0.00 0.00 1.82
216 217 6.591001 AGAAAATTGCACAAACCACCTATTT 58.409 32.000 0.00 0.00 0.00 1.40
217 218 6.173427 AGAAAATTGCACAAACCACCTATT 57.827 33.333 0.00 0.00 0.00 1.73
218 219 5.304101 TGAGAAAATTGCACAAACCACCTAT 59.696 36.000 0.00 0.00 0.00 2.57
219 220 4.646945 TGAGAAAATTGCACAAACCACCTA 59.353 37.500 0.00 0.00 0.00 3.08
220 221 3.450457 TGAGAAAATTGCACAAACCACCT 59.550 39.130 0.00 0.00 0.00 4.00
221 222 3.791245 TGAGAAAATTGCACAAACCACC 58.209 40.909 0.00 0.00 0.00 4.61
222 223 5.793026 TTTGAGAAAATTGCACAAACCAC 57.207 34.783 0.00 0.00 0.00 4.16
223 224 7.254727 GCTTATTTGAGAAAATTGCACAAACCA 60.255 33.333 0.00 0.00 34.21 3.67
224 225 7.071414 GCTTATTTGAGAAAATTGCACAAACC 58.929 34.615 0.00 0.00 34.21 3.27
225 226 7.071414 GGCTTATTTGAGAAAATTGCACAAAC 58.929 34.615 0.00 0.00 34.21 2.93
226 227 6.204495 GGGCTTATTTGAGAAAATTGCACAAA 59.796 34.615 0.00 0.00 35.49 2.83
227 228 5.700373 GGGCTTATTTGAGAAAATTGCACAA 59.300 36.000 0.00 0.00 0.00 3.33
228 229 5.237048 GGGCTTATTTGAGAAAATTGCACA 58.763 37.500 0.00 0.00 0.00 4.57
229 230 4.631377 GGGGCTTATTTGAGAAAATTGCAC 59.369 41.667 0.00 6.78 0.00 4.57
230 231 4.620332 CGGGGCTTATTTGAGAAAATTGCA 60.620 41.667 0.00 0.00 0.00 4.08
231 232 3.865164 CGGGGCTTATTTGAGAAAATTGC 59.135 43.478 0.00 0.00 0.00 3.56
232 233 5.072040 ACGGGGCTTATTTGAGAAAATTG 57.928 39.130 0.00 0.00 0.00 2.32
233 234 4.159693 GGACGGGGCTTATTTGAGAAAATT 59.840 41.667 0.00 0.00 0.00 1.82
234 235 3.699538 GGACGGGGCTTATTTGAGAAAAT 59.300 43.478 0.00 0.00 0.00 1.82
235 236 3.086282 GGACGGGGCTTATTTGAGAAAA 58.914 45.455 0.00 0.00 0.00 2.29
236 237 2.619590 GGGACGGGGCTTATTTGAGAAA 60.620 50.000 0.00 0.00 0.00 2.52
237 238 1.064979 GGGACGGGGCTTATTTGAGAA 60.065 52.381 0.00 0.00 0.00 2.87
238 239 0.544697 GGGACGGGGCTTATTTGAGA 59.455 55.000 0.00 0.00 0.00 3.27
239 240 0.546598 AGGGACGGGGCTTATTTGAG 59.453 55.000 0.00 0.00 0.00 3.02
240 241 0.544697 GAGGGACGGGGCTTATTTGA 59.455 55.000 0.00 0.00 0.00 2.69
241 242 0.254747 TGAGGGACGGGGCTTATTTG 59.745 55.000 0.00 0.00 0.00 2.32
242 243 0.255033 GTGAGGGACGGGGCTTATTT 59.745 55.000 0.00 0.00 0.00 1.40
243 244 1.912971 GTGAGGGACGGGGCTTATT 59.087 57.895 0.00 0.00 0.00 1.40
244 245 2.432300 CGTGAGGGACGGGGCTTAT 61.432 63.158 0.00 0.00 44.85 1.73
301 302 4.402793 CGAGAGAGAAAAGGGATAAGGTGA 59.597 45.833 0.00 0.00 0.00 4.02
331 332 2.594131 TGGAAGGAAGAAGACGACTCA 58.406 47.619 0.00 0.00 0.00 3.41
355 356 2.217038 GGTGTCAGGGGACTCTGCA 61.217 63.158 0.00 0.00 44.61 4.41
384 385 2.178580 GCTGATTGGATTTTGGTGGGA 58.821 47.619 0.00 0.00 0.00 4.37
385 386 1.901159 TGCTGATTGGATTTTGGTGGG 59.099 47.619 0.00 0.00 0.00 4.61
411 412 2.547990 GTGTAGGGGAAAGGGAAGAGA 58.452 52.381 0.00 0.00 0.00 3.10
464 465 2.594303 CCCCTGTCGCAGCAACAA 60.594 61.111 0.00 0.00 0.00 2.83
502 503 3.802852 AACGCAACAACCCCCTCCC 62.803 63.158 0.00 0.00 0.00 4.30
511 512 1.537638 ACAGTTGTCACAACGCAACAA 59.462 42.857 15.05 0.00 45.16 2.83
514 515 4.624336 AATAACAGTTGTCACAACGCAA 57.376 36.364 15.05 3.03 0.00 4.85
526 527 6.449698 TCTCGTCGTCCTAAAAATAACAGTT 58.550 36.000 0.00 0.00 0.00 3.16
533 534 4.389077 CAGCTTTCTCGTCGTCCTAAAAAT 59.611 41.667 0.00 0.00 0.00 1.82
549 551 2.087646 GGAACATCCACTCCAGCTTTC 58.912 52.381 0.00 0.00 36.28 2.62
573 575 0.322187 GAAAAACTGGCGAGCCCCTA 60.322 55.000 12.05 0.00 34.56 3.53
582 584 3.916761 TGATGATGCAAGAAAAACTGGC 58.083 40.909 0.00 0.00 45.24 4.85
592 596 4.803613 CCACAACAATGATGATGATGCAAG 59.196 41.667 0.00 0.00 33.82 4.01
598 602 2.492881 GCCACCACAACAATGATGATGA 59.507 45.455 0.00 0.00 33.82 2.92
606 610 2.732289 GTGAGGCCACCACAACAAT 58.268 52.632 19.54 0.00 37.33 2.71
636 640 0.718904 CCGACGATGTTTCATCGCAA 59.281 50.000 25.15 0.00 44.60 4.85
693 697 2.740714 GATGTTCCGTCGCTGTGCC 61.741 63.158 0.00 0.00 0.00 5.01
695 699 3.072598 CGATGTTCCGTCGCTGTG 58.927 61.111 0.00 0.00 36.11 3.66
716 721 3.952675 CAACGCAACGTGCAGCCT 61.953 61.111 9.95 0.00 45.36 4.58
794 799 6.006759 TGATCTATCACAGCAGAATAGTCG 57.993 41.667 0.00 0.00 0.00 4.18
799 804 5.268118 TCGTTGATCTATCACAGCAGAAT 57.732 39.130 0.00 0.00 36.36 2.40
811 816 3.179048 CGACACTGCATTCGTTGATCTA 58.821 45.455 0.00 0.00 0.00 1.98
834 839 2.709125 CTTCTCACGCCGTTGGACCA 62.709 60.000 0.00 0.00 0.00 4.02
840 845 0.892755 TGATACCTTCTCACGCCGTT 59.107 50.000 0.00 0.00 0.00 4.44
849 854 5.129485 ACAAATCATCCGACTGATACCTTCT 59.871 40.000 0.88 0.00 34.79 2.85
852 857 5.509840 GCTACAAATCATCCGACTGATACCT 60.510 44.000 0.88 0.00 34.79 3.08
883 888 1.812922 GCTGGACCTCTCGTGCATG 60.813 63.158 0.00 0.00 42.55 4.06
951 1440 8.913487 AAGAGGTTTATTAGAAAAACGAAGGA 57.087 30.769 0.00 0.00 37.64 3.36
997 1486 0.986527 TTTGATCTGGCTGCTGAGGA 59.013 50.000 0.00 0.00 0.00 3.71
1541 2042 2.808543 GGTTCTATCATGGCATTCCGTC 59.191 50.000 0.00 0.00 34.14 4.79
1544 2045 1.537202 GCGGTTCTATCATGGCATTCC 59.463 52.381 0.00 0.00 0.00 3.01
1602 2103 4.401925 AGACTTGGTAAGAAGCAAAGCAT 58.598 39.130 0.00 0.00 42.24 3.79
1618 2119 5.042905 GGTTTCACCCCTCAAGTAGACTTG 61.043 50.000 14.97 14.97 42.47 3.16
1682 2183 4.634443 GGCATTCTATACTGGAACGTTGTT 59.366 41.667 5.00 0.00 0.00 2.83
1685 2194 3.454812 AGGGCATTCTATACTGGAACGTT 59.545 43.478 0.00 0.00 0.00 3.99
1691 2200 2.338809 TCCCAGGGCATTCTATACTGG 58.661 52.381 0.00 0.00 46.36 4.00
1829 2338 7.037438 ACACACAAATCATCAATGGCTTATTC 58.963 34.615 0.00 0.00 0.00 1.75
1850 2359 5.221244 CCACTACATGATCTTCGGATACACA 60.221 44.000 0.00 0.00 34.38 3.72
1862 2371 4.446371 CAAACCTCTCCCACTACATGATC 58.554 47.826 0.00 0.00 0.00 2.92
1872 2381 0.550914 ACAACTGCAAACCTCTCCCA 59.449 50.000 0.00 0.00 0.00 4.37
2029 2538 4.879545 AGGTTGAATCACAAAACGTACACT 59.120 37.500 0.00 0.00 40.36 3.55
2173 2747 7.394077 TGCAGAAAGATGAACTCCAATCATAAA 59.606 33.333 0.00 0.00 37.64 1.40
2175 2749 6.417258 TGCAGAAAGATGAACTCCAATCATA 58.583 36.000 0.00 0.00 37.64 2.15
2261 2835 9.443283 GCACATTATTTCTTCTAGCAATACTTG 57.557 33.333 0.00 0.00 0.00 3.16
2276 2850 5.266242 CAGCTTACTTCGGCACATTATTTC 58.734 41.667 0.00 0.00 0.00 2.17
2300 2874 6.219473 ACAAGAGATGTAACAGAACAGACAG 58.781 40.000 0.00 0.00 41.63 3.51
2305 2879 9.554395 TTCATAAACAAGAGATGTAACAGAACA 57.446 29.630 0.00 0.00 42.99 3.18
2412 2992 3.126858 ACACTATACGCCATTGTTGCAAG 59.873 43.478 0.00 0.00 0.00 4.01
2509 3091 8.923609 AACTAGATATAGATCATGCATGTTCG 57.076 34.615 25.43 13.24 34.17 3.95
2556 3139 3.692593 GCCCACAAAAATATACCGACTGT 59.307 43.478 0.00 0.00 0.00 3.55
2563 3146 6.602009 AGAACCACTAGCCCACAAAAATATAC 59.398 38.462 0.00 0.00 0.00 1.47
2572 3155 0.250727 GCAAGAACCACTAGCCCACA 60.251 55.000 0.00 0.00 0.00 4.17
2587 3170 5.237996 TCAGATCACAAAAGACTCAAGCAAG 59.762 40.000 0.00 0.00 0.00 4.01
2724 3307 3.181437 ACCGTAATCAGAAAAACCAGGGT 60.181 43.478 0.00 0.00 0.00 4.34
2762 3354 9.624697 TTAATTCATCTGTTATTTGACAAGTGC 57.375 29.630 0.00 0.00 0.00 4.40
2912 3518 1.062525 GCCTGTTTTATCAGCGCGG 59.937 57.895 8.83 0.00 34.47 6.46
2916 3522 0.099436 CCGCTGCCTGTTTTATCAGC 59.901 55.000 3.24 3.24 46.01 4.26
2918 3524 0.607762 TGCCGCTGCCTGTTTTATCA 60.608 50.000 0.00 0.00 36.33 2.15
3480 4086 2.565834 ACAGTGGTACAGGTCATGGTAC 59.434 50.000 0.00 0.00 41.80 3.34
3521 4127 1.447317 CCCGCTCAACTTGCAAGTGT 61.447 55.000 31.73 18.60 39.66 3.55
3647 4253 4.389687 TCTTAAATTCGTGCGGTAAGTTCC 59.610 41.667 0.00 0.00 0.00 3.62
3670 4276 9.073475 TGTGGCTTTGTGATAAAATAACTTAGT 57.927 29.630 0.00 0.00 0.00 2.24
3671 4277 9.906660 TTGTGGCTTTGTGATAAAATAACTTAG 57.093 29.630 0.00 0.00 0.00 2.18
3672 4278 9.685828 GTTGTGGCTTTGTGATAAAATAACTTA 57.314 29.630 0.00 0.00 0.00 2.24
3673 4279 8.421002 AGTTGTGGCTTTGTGATAAAATAACTT 58.579 29.630 0.00 0.00 0.00 2.66
3674 4280 7.951591 AGTTGTGGCTTTGTGATAAAATAACT 58.048 30.769 0.00 0.00 0.00 2.24
3675 4281 8.587952 AAGTTGTGGCTTTGTGATAAAATAAC 57.412 30.769 0.00 0.00 0.00 1.89
3680 4286 5.735922 GCTGAAGTTGTGGCTTTGTGATAAA 60.736 40.000 0.00 0.00 0.00 1.40
3682 4288 3.253188 GCTGAAGTTGTGGCTTTGTGATA 59.747 43.478 0.00 0.00 0.00 2.15
3744 4420 5.280945 GCAAGCAGAAAAGTAACATGTTGA 58.719 37.500 21.42 2.67 0.00 3.18
3817 4527 2.514129 GGAGAGCATCCTCAGCTGA 58.486 57.895 17.19 17.19 45.64 4.26
3856 4566 9.201989 TGGTAGATGAACTCTTATAACACTCAT 57.798 33.333 0.00 0.00 35.28 2.90
3857 4567 8.467598 GTGGTAGATGAACTCTTATAACACTCA 58.532 37.037 7.72 0.00 34.54 3.41
3858 4568 7.644551 CGTGGTAGATGAACTCTTATAACACTC 59.355 40.741 11.41 0.00 34.94 3.51
3859 4569 7.338703 TCGTGGTAGATGAACTCTTATAACACT 59.661 37.037 11.41 0.00 34.94 3.55
3860 4570 7.478322 TCGTGGTAGATGAACTCTTATAACAC 58.522 38.462 5.71 5.71 34.24 3.32
3861 4571 7.555195 TCTCGTGGTAGATGAACTCTTATAACA 59.445 37.037 0.00 0.00 35.28 2.41
3862 4572 7.928103 TCTCGTGGTAGATGAACTCTTATAAC 58.072 38.462 0.00 0.00 35.28 1.89
3863 4573 8.693120 ATCTCGTGGTAGATGAACTCTTATAA 57.307 34.615 0.00 0.00 34.87 0.98
3864 4574 7.117956 CGATCTCGTGGTAGATGAACTCTTATA 59.882 40.741 0.00 0.00 36.33 0.98
3865 4575 6.072948 CGATCTCGTGGTAGATGAACTCTTAT 60.073 42.308 0.00 0.00 36.33 1.73
3866 4576 5.236695 CGATCTCGTGGTAGATGAACTCTTA 59.763 44.000 0.00 0.00 36.33 2.10
3867 4577 4.035792 CGATCTCGTGGTAGATGAACTCTT 59.964 45.833 0.00 0.00 36.33 2.85
3868 4578 3.562141 CGATCTCGTGGTAGATGAACTCT 59.438 47.826 0.00 0.00 36.33 3.24
3869 4579 3.879427 CGATCTCGTGGTAGATGAACTC 58.121 50.000 0.00 0.00 36.33 3.01
3870 4580 3.972950 CGATCTCGTGGTAGATGAACT 57.027 47.619 0.00 0.00 36.33 3.01
3883 4593 7.306213 TCTAGATTTTAGCCATTACGATCTCG 58.694 38.462 0.00 0.00 46.33 4.04
3884 4594 9.134734 CTTCTAGATTTTAGCCATTACGATCTC 57.865 37.037 0.00 0.00 0.00 2.75
3885 4595 8.643324 ACTTCTAGATTTTAGCCATTACGATCT 58.357 33.333 0.00 0.00 0.00 2.75
3886 4596 8.819643 ACTTCTAGATTTTAGCCATTACGATC 57.180 34.615 0.00 0.00 0.00 3.69
3887 4597 8.643324 AGACTTCTAGATTTTAGCCATTACGAT 58.357 33.333 0.00 0.00 0.00 3.73
3888 4598 8.008513 AGACTTCTAGATTTTAGCCATTACGA 57.991 34.615 0.00 0.00 0.00 3.43
3889 4599 9.400638 CTAGACTTCTAGATTTTAGCCATTACG 57.599 37.037 7.42 0.00 46.80 3.18
3904 4614 9.214957 CCATAGTCATACAGTCTAGACTTCTAG 57.785 40.741 23.01 13.86 45.57 2.43
3905 4615 8.715842 ACCATAGTCATACAGTCTAGACTTCTA 58.284 37.037 23.01 14.80 41.27 2.10
3906 4616 7.579105 ACCATAGTCATACAGTCTAGACTTCT 58.421 38.462 23.01 13.11 41.27 2.85
3907 4617 7.811117 ACCATAGTCATACAGTCTAGACTTC 57.189 40.000 23.01 9.17 41.27 3.01
3908 4618 7.811117 GACCATAGTCATACAGTCTAGACTT 57.189 40.000 23.01 15.81 42.99 3.01
3962 4672 2.027469 CCCCTCGGTGCCTATATAAACC 60.027 54.545 0.00 0.68 0.00 3.27
3963 4673 2.901839 TCCCCTCGGTGCCTATATAAAC 59.098 50.000 0.00 0.00 0.00 2.01
3964 4674 3.263369 TCCCCTCGGTGCCTATATAAA 57.737 47.619 0.00 0.00 0.00 1.40
3965 4675 3.012502 AGATCCCCTCGGTGCCTATATAA 59.987 47.826 0.00 0.00 0.00 0.98
3966 4676 2.585900 AGATCCCCTCGGTGCCTATATA 59.414 50.000 0.00 0.00 0.00 0.86
3967 4677 1.362932 AGATCCCCTCGGTGCCTATAT 59.637 52.381 0.00 0.00 0.00 0.86
3968 4678 0.784495 AGATCCCCTCGGTGCCTATA 59.216 55.000 0.00 0.00 0.00 1.31
3969 4679 0.784495 TAGATCCCCTCGGTGCCTAT 59.216 55.000 0.00 0.00 0.00 2.57
3970 4680 0.112606 CTAGATCCCCTCGGTGCCTA 59.887 60.000 0.00 0.00 0.00 3.93
3971 4681 1.152440 CTAGATCCCCTCGGTGCCT 60.152 63.158 0.00 0.00 0.00 4.75
3972 4682 2.210711 CCTAGATCCCCTCGGTGCC 61.211 68.421 0.00 0.00 0.00 5.01
3973 4683 2.210711 CCCTAGATCCCCTCGGTGC 61.211 68.421 0.00 0.00 0.00 5.01
3974 4684 0.398664 AACCCTAGATCCCCTCGGTG 60.399 60.000 0.00 0.00 30.48 4.94
3975 4685 0.105607 GAACCCTAGATCCCCTCGGT 60.106 60.000 0.00 0.00 31.07 4.69
3976 4686 0.105658 TGAACCCTAGATCCCCTCGG 60.106 60.000 0.00 0.00 0.00 4.63
3977 4687 1.041437 GTGAACCCTAGATCCCCTCG 58.959 60.000 0.00 0.00 0.00 4.63
3978 4688 2.176247 TGTGAACCCTAGATCCCCTC 57.824 55.000 0.00 0.00 0.00 4.30
3979 4689 2.897823 ATGTGAACCCTAGATCCCCT 57.102 50.000 0.00 0.00 0.00 4.79
3980 4690 3.835395 CTCTATGTGAACCCTAGATCCCC 59.165 52.174 0.00 0.00 0.00 4.81
3981 4691 4.484912 ACTCTATGTGAACCCTAGATCCC 58.515 47.826 0.00 0.00 0.00 3.85
3982 4692 5.221541 CCAACTCTATGTGAACCCTAGATCC 60.222 48.000 0.00 0.00 0.00 3.36
3983 4693 5.364157 ACCAACTCTATGTGAACCCTAGATC 59.636 44.000 0.00 0.00 0.00 2.75
3984 4694 5.281314 ACCAACTCTATGTGAACCCTAGAT 58.719 41.667 0.00 0.00 0.00 1.98
3985 4695 4.684724 ACCAACTCTATGTGAACCCTAGA 58.315 43.478 0.00 0.00 0.00 2.43
3992 4702 4.216411 GGCCTAACCAACTCTATGTGAA 57.784 45.455 0.00 0.00 38.86 3.18
4045 4756 0.471617 TTTTACCCCAAACGGACGGA 59.528 50.000 0.00 0.00 0.00 4.69
4089 4800 4.922026 AAGTCCGTTTGCGCCCGT 62.922 61.111 4.18 0.00 36.67 5.28
4224 4936 0.400213 TTGCTTTCTCCCACCGACAT 59.600 50.000 0.00 0.00 0.00 3.06
4255 4972 1.152355 CAAATGGGTGTGTGGGGGT 60.152 57.895 0.00 0.00 0.00 4.95
4256 4973 1.912763 CCAAATGGGTGTGTGGGGG 60.913 63.158 0.00 0.00 0.00 5.40
4257 4974 2.582493 GCCAAATGGGTGTGTGGGG 61.582 63.158 0.90 0.00 39.65 4.96
4258 4975 2.929903 CGCCAAATGGGTGTGTGGG 61.930 63.158 0.90 0.00 42.49 4.61
4259 4976 2.650196 CGCCAAATGGGTGTGTGG 59.350 61.111 0.90 0.00 42.49 4.17
4284 5015 2.522367 GGACGTGGGAGGGTTTGGA 61.522 63.158 0.00 0.00 0.00 3.53
4446 5203 1.264557 CTCTTCGCCGATATCACGTCT 59.735 52.381 13.12 0.00 0.00 4.18
4454 5211 0.106369 TTCCCTCCTCTTCGCCGATA 60.106 55.000 0.00 0.00 0.00 2.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.