Multiple sequence alignment - TraesCS4A01G161700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G161700 chr4A 100.000 2722 0 0 1477 4198 351897424 351900145 0.000000e+00 5027.0
1 TraesCS4A01G161700 chr4A 100.000 1127 0 0 1 1127 351895948 351897074 0.000000e+00 2082.0
2 TraesCS4A01G161700 chr4A 95.965 917 37 0 1 917 290627850 290628766 0.000000e+00 1489.0
3 TraesCS4A01G161700 chr4A 97.214 323 8 1 3876 4198 244711421 244711742 2.850000e-151 545.0
4 TraesCS4A01G161700 chr4A 94.350 354 17 2 1556 1909 290628763 290629113 1.330000e-149 540.0
5 TraesCS4A01G161700 chr4A 97.170 318 8 1 3881 4198 317507949 317507633 1.720000e-148 536.0
6 TraesCS4A01G161700 chr4A 96.573 321 10 1 3878 4198 707083733 707083414 7.990000e-147 531.0
7 TraesCS4A01G161700 chr4A 96.238 319 11 1 3880 4198 206528519 206528836 4.810000e-144 521.0
8 TraesCS4A01G161700 chr4A 95.963 322 12 1 3877 4198 716412005 716411685 4.810000e-144 521.0
9 TraesCS4A01G161700 chr4A 94.444 234 13 0 1676 1909 123927866 123927633 1.110000e-95 361.0
10 TraesCS4A01G161700 chr5A 92.190 1434 112 0 2456 3889 258352149 258350716 0.000000e+00 2028.0
11 TraesCS4A01G161700 chr5A 92.206 1437 106 6 2456 3889 496727420 496725987 0.000000e+00 2028.0
12 TraesCS4A01G161700 chr5A 92.129 1423 112 0 2458 3880 165224733 165223311 0.000000e+00 2008.0
13 TraesCS4A01G161700 chr5A 91.492 1434 122 0 2456 3889 165239357 165237924 0.000000e+00 1973.0
14 TraesCS4A01G161700 chr5A 91.533 1429 116 2 2456 3880 258370328 258368901 0.000000e+00 1964.0
15 TraesCS4A01G161700 chr1A 92.264 1422 109 1 2456 3877 350666807 350668227 0.000000e+00 2015.0
16 TraesCS4A01G161700 chr1A 89.024 82 5 2 1832 1909 86975588 86975669 9.610000e-17 99.0
17 TraesCS4A01G161700 chr1A 90.667 75 6 1 1836 1909 513151589 513151515 9.610000e-17 99.0
18 TraesCS4A01G161700 chr1A 88.608 79 5 3 1836 1913 568279422 568279347 4.470000e-15 93.5
19 TraesCS4A01G161700 chr1A 88.312 77 8 1 1826 1901 270575916 270575992 1.610000e-14 91.6
20 TraesCS4A01G161700 chr1A 88.312 77 6 3 1836 1909 523674029 523673953 5.780000e-14 89.8
21 TraesCS4A01G161700 chr3A 91.579 1425 119 1 2453 3877 300641464 300642887 0.000000e+00 1965.0
22 TraesCS4A01G161700 chr3A 91.144 1434 124 3 2456 3889 249788565 249787135 0.000000e+00 1941.0
23 TraesCS4A01G161700 chr3A 96.855 318 9 1 3881 4198 158751026 158751342 7.990000e-147 531.0
24 TraesCS4A01G161700 chr3A 93.750 80 5 0 1848 1927 649151304 649151225 2.050000e-23 121.0
25 TraesCS4A01G161700 chr3A 93.671 79 5 0 1849 1927 465660021 465659943 7.370000e-23 119.0
26 TraesCS4A01G161700 chr3A 80.420 143 26 2 1766 1907 720827976 720827835 1.600000e-19 108.0
27 TraesCS4A01G161700 chr3A 95.349 43 1 1 461 503 19774242 19774283 2.710000e-07 67.6
28 TraesCS4A01G161700 chr7A 91.637 1423 114 5 2456 3877 368278825 368280243 0.000000e+00 1964.0
29 TraesCS4A01G161700 chr7A 96.552 319 10 1 3880 4198 13308775 13309092 1.030000e-145 527.0
30 TraesCS4A01G161700 chr7A 93.333 75 5 0 1849 1923 489704898 489704972 1.230000e-20 111.0
31 TraesCS4A01G161700 chr7A 98.305 59 1 0 1849 1907 122863437 122863379 2.060000e-18 104.0
32 TraesCS4A01G161700 chr7A 86.316 95 10 3 1817 1909 429696651 429696558 2.670000e-17 100.0
33 TraesCS4A01G161700 chr2A 94.504 1128 60 2 1 1127 575412287 575413413 0.000000e+00 1738.0
34 TraesCS4A01G161700 chr2A 90.962 520 45 2 1937 2455 205499787 205500305 0.000000e+00 699.0
35 TraesCS4A01G161700 chr2A 88.929 560 61 1 1896 2455 227887490 227888048 0.000000e+00 689.0
36 TraesCS4A01G161700 chr2A 82.789 459 60 12 1535 1985 575413634 575414081 3.930000e-105 392.0
37 TraesCS4A01G161700 chr6A 93.419 1094 60 4 1 1084 202146051 202144960 0.000000e+00 1611.0
38 TraesCS4A01G161700 chr6A 93.208 1060 52 3 1 1059 81612444 81611404 0.000000e+00 1541.0
39 TraesCS4A01G161700 chr6A 92.587 688 39 4 1 679 344780949 344781633 0.000000e+00 977.0
40 TraesCS4A01G161700 chr6A 91.715 688 45 4 1 679 344815716 344816400 0.000000e+00 944.0
41 TraesCS4A01G161700 chr6A 94.444 234 13 0 1676 1909 81610990 81610757 1.110000e-95 361.0
42 TraesCS4A01G161700 chr6A 94.444 72 3 1 1836 1906 68347681 68347752 4.440000e-20 110.0
43 TraesCS4A01G161700 chr6A 87.059 85 8 2 1828 1909 328875996 328875912 4.470000e-15 93.5
44 TraesCS4A01G161700 chr6A 84.536 97 10 4 1836 1927 541169425 541169521 1.610000e-14 91.6
45 TraesCS4A01G161700 chr6B 88.740 968 80 15 1 957 493698324 493699273 0.000000e+00 1157.0
46 TraesCS4A01G161700 chr6B 94.444 234 13 0 1676 1909 148282821 148282588 1.110000e-95 361.0
47 TraesCS4A01G161700 chr6D 91.856 528 42 1 1928 2455 216866542 216867068 0.000000e+00 736.0
48 TraesCS4A01G161700 chr6D 93.651 63 4 0 1849 1911 415383334 415383272 1.240000e-15 95.3
49 TraesCS4A01G161700 chr6D 88.406 69 8 0 1849 1917 416411431 416411363 2.690000e-12 84.2
50 TraesCS4A01G161700 chr6D 90.476 63 3 3 1836 1895 209159877 209159939 3.480000e-11 80.5
51 TraesCS4A01G161700 chr5D 91.379 522 44 1 1934 2455 152487492 152488012 0.000000e+00 713.0
52 TraesCS4A01G161700 chr1D 91.205 523 45 1 1932 2454 450638571 450638050 0.000000e+00 710.0
53 TraesCS4A01G161700 chr1D 90.667 75 6 1 1836 1909 61878374 61878300 9.610000e-17 99.0
54 TraesCS4A01G161700 chr1D 95.161 62 3 0 1849 1910 340715166 340715105 9.610000e-17 99.0
55 TraesCS4A01G161700 chr7B 90.649 524 49 0 1932 2455 644432541 644432018 0.000000e+00 697.0
56 TraesCS4A01G161700 chr7B 96.541 318 9 2 3881 4198 731870839 731870524 3.720000e-145 525.0
57 TraesCS4A01G161700 chr7B 88.372 86 8 2 1826 1909 119941801 119941716 7.430000e-18 102.0
58 TraesCS4A01G161700 chr7B 89.157 83 8 1 1828 1909 248699996 248699914 7.430000e-18 102.0
59 TraesCS4A01G161700 chr3D 89.796 539 51 3 1906 2440 213309345 213309883 0.000000e+00 688.0
60 TraesCS4A01G161700 chr3D 88.960 471 47 4 209 676 17115733 17115265 1.010000e-160 577.0
61 TraesCS4A01G161700 chr3D 89.394 66 7 0 1841 1906 310179126 310179191 2.690000e-12 84.2
62 TraesCS4A01G161700 chr2D 88.750 560 62 1 1896 2455 442928470 442929028 0.000000e+00 684.0
63 TraesCS4A01G161700 chr4B 86.667 600 73 5 1856 2455 572723541 572722949 0.000000e+00 658.0
64 TraesCS4A01G161700 chr4B 94.286 70 2 2 1846 1915 73545141 73545208 5.740000e-19 106.0
65 TraesCS4A01G161700 chr7D 89.835 423 39 3 1494 1913 367023074 367022653 1.330000e-149 540.0
66 TraesCS4A01G161700 chrUn 96.238 319 10 2 3881 4198 293907614 293907297 4.810000e-144 521.0
67 TraesCS4A01G161700 chrUn 95.082 61 3 0 1849 1909 70699325 70699385 3.450000e-16 97.1
68 TraesCS4A01G161700 chrUn 95.082 61 3 0 1849 1909 269937317 269937257 3.450000e-16 97.1
69 TraesCS4A01G161700 chrUn 86.667 75 8 2 1836 1909 195335493 195335566 9.670000e-12 82.4
70 TraesCS4A01G161700 chrUn 87.013 77 4 3 1836 1911 284942614 284942543 9.670000e-12 82.4
71 TraesCS4A01G161700 chrUn 86.667 75 4 3 1836 1909 307785575 307785506 1.250000e-10 78.7
72 TraesCS4A01G161700 chrUn 97.500 40 1 0 1849 1888 316627002 316626963 7.530000e-08 69.4
73 TraesCS4A01G161700 chr3B 90.435 115 11 0 581 695 24518078 24517964 7.270000e-33 152.0
74 TraesCS4A01G161700 chr3B 90.196 51 4 1 1650 1700 731021179 731021228 9.740000e-07 65.8
75 TraesCS4A01G161700 chr1B 93.671 79 3 1 1849 1927 442685930 442685854 2.650000e-22 117.0
76 TraesCS4A01G161700 chr1B 87.805 82 7 2 1826 1904 533330239 533330158 4.470000e-15 93.5
77 TraesCS4A01G161700 chr5B 86.957 92 8 3 1820 1909 310198491 310198580 2.670000e-17 100.0
78 TraesCS4A01G161700 chr5B 87.500 56 4 2 1650 1703 166723350 166723296 1.260000e-05 62.1
79 TraesCS4A01G161700 chr4D 93.333 60 2 1 1849 1908 153926329 153926386 2.080000e-13 87.9
80 TraesCS4A01G161700 chr4D 87.671 73 3 3 1849 1921 256029548 256029614 3.480000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G161700 chr4A 351895948 351900145 4197 False 3554.5 5027 100.0000 1 4198 2 chr4A.!!$F4 4197
1 TraesCS4A01G161700 chr4A 290627850 290629113 1263 False 1014.5 1489 95.1575 1 1909 2 chr4A.!!$F3 1908
2 TraesCS4A01G161700 chr5A 258350716 258352149 1433 True 2028.0 2028 92.1900 2456 3889 1 chr5A.!!$R3 1433
3 TraesCS4A01G161700 chr5A 496725987 496727420 1433 True 2028.0 2028 92.2060 2456 3889 1 chr5A.!!$R5 1433
4 TraesCS4A01G161700 chr5A 165223311 165224733 1422 True 2008.0 2008 92.1290 2458 3880 1 chr5A.!!$R1 1422
5 TraesCS4A01G161700 chr5A 165237924 165239357 1433 True 1973.0 1973 91.4920 2456 3889 1 chr5A.!!$R2 1433
6 TraesCS4A01G161700 chr5A 258368901 258370328 1427 True 1964.0 1964 91.5330 2456 3880 1 chr5A.!!$R4 1424
7 TraesCS4A01G161700 chr1A 350666807 350668227 1420 False 2015.0 2015 92.2640 2456 3877 1 chr1A.!!$F3 1421
8 TraesCS4A01G161700 chr3A 300641464 300642887 1423 False 1965.0 1965 91.5790 2453 3877 1 chr3A.!!$F3 1424
9 TraesCS4A01G161700 chr3A 249787135 249788565 1430 True 1941.0 1941 91.1440 2456 3889 1 chr3A.!!$R1 1433
10 TraesCS4A01G161700 chr7A 368278825 368280243 1418 False 1964.0 1964 91.6370 2456 3877 1 chr7A.!!$F2 1421
11 TraesCS4A01G161700 chr2A 575412287 575414081 1794 False 1065.0 1738 88.6465 1 1985 2 chr2A.!!$F3 1984
12 TraesCS4A01G161700 chr2A 205499787 205500305 518 False 699.0 699 90.9620 1937 2455 1 chr2A.!!$F1 518
13 TraesCS4A01G161700 chr2A 227887490 227888048 558 False 689.0 689 88.9290 1896 2455 1 chr2A.!!$F2 559
14 TraesCS4A01G161700 chr6A 202144960 202146051 1091 True 1611.0 1611 93.4190 1 1084 1 chr6A.!!$R1 1083
15 TraesCS4A01G161700 chr6A 344780949 344781633 684 False 977.0 977 92.5870 1 679 1 chr6A.!!$F2 678
16 TraesCS4A01G161700 chr6A 81610757 81612444 1687 True 951.0 1541 93.8260 1 1909 2 chr6A.!!$R3 1908
17 TraesCS4A01G161700 chr6A 344815716 344816400 684 False 944.0 944 91.7150 1 679 1 chr6A.!!$F3 678
18 TraesCS4A01G161700 chr6B 493698324 493699273 949 False 1157.0 1157 88.7400 1 957 1 chr6B.!!$F1 956
19 TraesCS4A01G161700 chr6D 216866542 216867068 526 False 736.0 736 91.8560 1928 2455 1 chr6D.!!$F2 527
20 TraesCS4A01G161700 chr5D 152487492 152488012 520 False 713.0 713 91.3790 1934 2455 1 chr5D.!!$F1 521
21 TraesCS4A01G161700 chr1D 450638050 450638571 521 True 710.0 710 91.2050 1932 2454 1 chr1D.!!$R3 522
22 TraesCS4A01G161700 chr7B 644432018 644432541 523 True 697.0 697 90.6490 1932 2455 1 chr7B.!!$R3 523
23 TraesCS4A01G161700 chr3D 213309345 213309883 538 False 688.0 688 89.7960 1906 2440 1 chr3D.!!$F1 534
24 TraesCS4A01G161700 chr2D 442928470 442929028 558 False 684.0 684 88.7500 1896 2455 1 chr2D.!!$F1 559
25 TraesCS4A01G161700 chr4B 572722949 572723541 592 True 658.0 658 86.6670 1856 2455 1 chr4B.!!$R1 599

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
456 467 1.271707 GGACCCCCGATCAAAAGTGAA 60.272 52.381 0.0 0.0 37.3 3.18 F
1779 1792 0.398522 TCGGGATGTGATAGTGGGCT 60.399 55.000 0.0 0.0 0.0 5.19 F
2393 2415 0.179073 CTGTGAACATAGAGGGCGGG 60.179 60.000 0.0 0.0 0.0 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2322 2343 0.032952 CACTCCCACGGACGAAGAAA 59.967 55.0 0.0 0.0 0.00 2.52 R
2696 2718 0.038526 ACTGATGACCGACACGTTCC 60.039 55.0 0.0 0.0 0.00 3.62 R
4012 4042 0.037326 TCAGTAGCGGAGTGGCAAAG 60.037 55.0 0.0 0.0 34.64 2.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
78 79 6.469410 AGTAAATAACAAGACCACCGAATCA 58.531 36.000 0.00 0.00 0.00 2.57
327 338 9.993454 CTACTACTACCCTAAAGAACTTTGTTT 57.007 33.333 9.66 0.00 34.23 2.83
379 390 3.484721 GCGGTAGCCATCGAAAACTAAAC 60.485 47.826 0.00 0.00 37.42 2.01
456 467 1.271707 GGACCCCCGATCAAAAGTGAA 60.272 52.381 0.00 0.00 37.30 3.18
552 563 4.279922 TCACTCTGAATTCTACCGACACAA 59.720 41.667 7.05 0.00 0.00 3.33
681 692 3.055094 CCCACTATGTAGCTGTCCTTTGT 60.055 47.826 0.00 0.00 0.00 2.83
695 706 6.349944 GCTGTCCTTTGTTGAATCATTCAGAT 60.350 38.462 0.00 0.00 41.38 2.90
802 813 3.181427 GGAGGAAGAGGAGTAGGATAGCA 60.181 52.174 0.00 0.00 0.00 3.49
827 838 4.818546 CAGGTGAGTTTTCTGAATGACACT 59.181 41.667 0.00 5.26 0.00 3.55
971 983 2.922503 TGCTGGAGGAGGAACGCA 60.923 61.111 0.00 0.00 0.00 5.24
1042 1055 4.741239 TGGAGGAGGGAGGTGGGC 62.741 72.222 0.00 0.00 0.00 5.36
1072 1085 4.700448 TCGCCGGGGTGGGAAGTA 62.700 66.667 19.13 0.00 38.63 2.24
1084 1097 2.183555 GAAGTAGGGACGGTGGCG 59.816 66.667 0.00 0.00 0.00 5.69
1524 1537 3.703127 GTGGGAGGTGGGGACGAC 61.703 72.222 0.00 0.00 0.00 4.34
1525 1538 4.242586 TGGGAGGTGGGGACGACA 62.243 66.667 0.00 0.00 0.00 4.35
1528 1541 3.311110 GAGGTGGGGACGACAGCA 61.311 66.667 0.00 0.00 38.72 4.41
1549 1562 2.905676 ATCTGCTGGGGAGGGAGGTC 62.906 65.000 0.00 0.00 0.00 3.85
1583 1596 3.334054 GCTGCCAGGGGAGGAAGT 61.334 66.667 9.00 0.00 36.61 3.01
1637 1650 3.327404 GGGGCGAAGGAGGTTCCA 61.327 66.667 0.00 0.00 39.61 3.53
1779 1792 0.398522 TCGGGATGTGATAGTGGGCT 60.399 55.000 0.00 0.00 0.00 5.19
1807 1820 6.071108 TGAGGTTGGTCTGATTTTTGTTTTCA 60.071 34.615 0.00 0.00 0.00 2.69
1820 1833 4.582701 TTGTTTTCACGCATCCAGAAAT 57.417 36.364 0.00 0.00 32.00 2.17
1832 1845 1.065491 TCCAGAAATGTCACATCGGGG 60.065 52.381 0.00 0.00 0.00 5.73
1925 1938 5.861222 ATATATGTGTGTGTGTGTGTGTG 57.139 39.130 0.00 0.00 0.00 3.82
1952 1973 8.846943 ACACACATAAACACTATTCTGATCAA 57.153 30.769 0.00 0.00 0.00 2.57
2085 2106 4.555313 CGCGAATTATTCCAGTCGGTAGTA 60.555 45.833 0.00 0.00 34.13 1.82
2125 2146 5.473273 TGTAATCCAGATACCCATACCTGT 58.527 41.667 0.00 0.00 0.00 4.00
2171 2192 7.753659 TCATAATTTTGCATTTTGGCAGATTG 58.246 30.769 0.00 0.00 45.88 2.67
2178 2199 3.442977 GCATTTTGGCAGATTGACTCTCT 59.557 43.478 4.31 0.00 29.16 3.10
2217 2238 7.539436 TGTGTCTGTTTACAAGTTTAATGCAA 58.461 30.769 0.00 0.00 0.00 4.08
2322 2343 3.190535 CGGATTTGATTTCGGGTTCTGTT 59.809 43.478 0.00 0.00 0.00 3.16
2349 2371 1.302511 CCGTGGGAGTGGTTTCCAG 60.303 63.158 0.00 0.00 39.09 3.86
2369 2391 4.823989 CCAGGGCTTCTATGGATTTGTTAG 59.176 45.833 0.00 0.00 36.09 2.34
2393 2415 0.179073 CTGTGAACATAGAGGGCGGG 60.179 60.000 0.00 0.00 0.00 6.13
2420 2442 4.824479 TTGCAGTAGTGAGATTGGATCA 57.176 40.909 0.42 0.00 0.00 2.92
2431 2453 4.274214 TGAGATTGGATCATTCATGCGTTC 59.726 41.667 0.00 0.00 0.00 3.95
2442 2464 9.241317 GATCATTCATGCGTTCTTAATTTGATT 57.759 29.630 0.00 0.00 0.00 2.57
2445 2467 6.507958 TCATGCGTTCTTAATTTGATTGGA 57.492 33.333 0.00 0.00 0.00 3.53
2448 2470 6.078202 TGCGTTCTTAATTTGATTGGACAA 57.922 33.333 0.00 0.00 0.00 3.18
2522 2544 2.158769 TCATATCACTTTGCGGCCTCAT 60.159 45.455 0.00 0.00 0.00 2.90
2531 2553 2.586079 CGGCCTCATGCACGGTAG 60.586 66.667 0.00 0.00 43.89 3.18
2534 2556 1.517832 GCCTCATGCACGGTAGTCT 59.482 57.895 0.00 0.00 40.77 3.24
2555 2577 1.140134 ATGGGTGCCACCTTACCTGT 61.140 55.000 14.71 0.00 38.64 4.00
2575 2597 3.508840 CGGGACCATTTGCGCCTC 61.509 66.667 4.18 0.00 0.00 4.70
2630 2652 3.270027 CATATGACAAAGAACCCGAGCA 58.730 45.455 0.00 0.00 0.00 4.26
2690 2712 0.532862 GGGACAGGCATACATGACCG 60.533 60.000 0.00 0.00 36.08 4.79
2696 2718 0.940126 GGCATACATGACCGAGCAAG 59.060 55.000 0.00 0.00 0.00 4.01
2759 2781 1.062734 TGGGCTAATAGGACTCCGGAA 60.063 52.381 5.23 0.00 0.00 4.30
2800 2826 2.037527 AGGACTCCGGAGACACCC 59.962 66.667 37.69 27.59 34.64 4.61
2809 2835 1.218316 GGAGACACCCCGTGACATC 59.782 63.158 0.00 0.00 36.96 3.06
2813 2839 1.535444 ACACCCCGTGACATCTCCA 60.535 57.895 0.00 0.00 36.96 3.86
2824 2850 1.482593 GACATCTCCACGAAGGGACAT 59.517 52.381 0.00 0.00 38.24 3.06
2910 2937 0.321671 GGCTCACTGGAAGCACTACA 59.678 55.000 6.00 0.00 37.60 2.74
2922 2949 3.788227 AGCACTACAAGACATTTCCCA 57.212 42.857 0.00 0.00 0.00 4.37
3082 3109 1.471119 TTCAATACGCTCCGAGGAGT 58.529 50.000 19.22 5.27 43.70 3.85
3194 3221 7.395489 AGACATCTACAAATGAAAAAGGCTGAT 59.605 33.333 0.00 0.00 0.00 2.90
3195 3222 7.899973 ACATCTACAAATGAAAAAGGCTGATT 58.100 30.769 0.00 0.00 0.00 2.57
3219 3246 3.498841 GCCTGACTAGCTACCAGATCCTA 60.499 52.174 16.17 0.00 0.00 2.94
3267 3294 7.108841 AGGTATCAAGCTAAACATCGAAGTA 57.891 36.000 0.00 0.00 0.00 2.24
3296 3323 5.521735 CGGAACTACTAGCGAGACTAAAGTA 59.478 44.000 0.00 0.00 30.58 2.24
3355 3384 6.062095 ACAAATGTACCAAGCAAGACTTACT 58.938 36.000 0.00 0.00 36.04 2.24
3496 3525 2.804647 CGCACACGAGTCCACATATTA 58.195 47.619 0.00 0.00 43.93 0.98
3510 3539 8.836413 AGTCCACATATTAACCATTTCAATACG 58.164 33.333 0.00 0.00 0.00 3.06
3538 3568 1.825281 GATCCGCTCCCATCTCCCTG 61.825 65.000 0.00 0.00 0.00 4.45
3549 3579 4.996976 CTCCCTGTGAGAACACCG 57.003 61.111 0.00 0.00 44.42 4.94
3553 3583 1.372997 CCTGTGAGAACACCGTCCG 60.373 63.158 0.00 0.00 45.40 4.79
3564 3594 1.900016 ACCGTCCGTAGCACTCACA 60.900 57.895 0.00 0.00 0.00 3.58
3588 3618 5.527582 ACTTATCTTGCGCATTTTAGGGTAG 59.472 40.000 12.75 1.45 0.00 3.18
3617 3647 7.985184 ACTTTCACTTGTCTATGAACTGTACAA 59.015 33.333 0.00 0.00 34.61 2.41
3640 3670 2.249309 ACCCAGAGGTCCTTTATCGT 57.751 50.000 0.00 0.00 46.45 3.73
3647 3677 3.735181 GTCCTTTATCGTGGACGCT 57.265 52.632 0.00 0.00 42.51 5.07
3772 3802 0.912006 GGAAGCCTGGAGAGGGAGTT 60.912 60.000 0.00 0.00 40.19 3.01
3773 3803 1.622725 GGAAGCCTGGAGAGGGAGTTA 60.623 57.143 0.00 0.00 40.19 2.24
3838 3868 1.073923 GCCTATTCGGGTTCCATCCAT 59.926 52.381 0.00 0.00 0.00 3.41
3854 3884 1.486997 CCATGAGGAGATCCGGCCAT 61.487 60.000 2.24 0.00 42.08 4.40
3866 3896 2.114670 CGGCCATGGTTTCGCTCAT 61.115 57.895 14.67 0.00 0.00 2.90
3877 3907 0.326595 TTCGCTCATAGCCCCAAACA 59.673 50.000 0.00 0.00 38.18 2.83
3880 3910 1.334869 CGCTCATAGCCCCAAACAATC 59.665 52.381 0.00 0.00 38.18 2.67
3881 3911 2.378038 GCTCATAGCCCCAAACAATCA 58.622 47.619 0.00 0.00 34.48 2.57
3882 3912 2.099756 GCTCATAGCCCCAAACAATCAC 59.900 50.000 0.00 0.00 34.48 3.06
3889 3919 2.554344 GCCCCAAACAATCACTACAGGA 60.554 50.000 0.00 0.00 0.00 3.86
3890 3920 3.761897 CCCCAAACAATCACTACAGGAA 58.238 45.455 0.00 0.00 0.00 3.36
3891 3921 4.344104 CCCCAAACAATCACTACAGGAAT 58.656 43.478 0.00 0.00 0.00 3.01
3892 3922 4.399303 CCCCAAACAATCACTACAGGAATC 59.601 45.833 0.00 0.00 0.00 2.52
3893 3923 5.009631 CCCAAACAATCACTACAGGAATCA 58.990 41.667 0.00 0.00 0.00 2.57
3894 3924 5.124457 CCCAAACAATCACTACAGGAATCAG 59.876 44.000 0.00 0.00 0.00 2.90
3895 3925 5.392380 CCAAACAATCACTACAGGAATCAGC 60.392 44.000 0.00 0.00 0.00 4.26
3896 3926 4.833478 ACAATCACTACAGGAATCAGCT 57.167 40.909 0.00 0.00 0.00 4.24
3897 3927 5.939764 ACAATCACTACAGGAATCAGCTA 57.060 39.130 0.00 0.00 0.00 3.32
3898 3928 5.665459 ACAATCACTACAGGAATCAGCTAC 58.335 41.667 0.00 0.00 0.00 3.58
3899 3929 5.423610 ACAATCACTACAGGAATCAGCTACT 59.576 40.000 0.00 0.00 0.00 2.57
3900 3930 6.070538 ACAATCACTACAGGAATCAGCTACTT 60.071 38.462 0.00 0.00 0.00 2.24
3901 3931 6.552445 ATCACTACAGGAATCAGCTACTTT 57.448 37.500 0.00 0.00 0.00 2.66
3902 3932 5.724328 TCACTACAGGAATCAGCTACTTTG 58.276 41.667 0.00 0.00 0.00 2.77
3903 3933 4.331168 CACTACAGGAATCAGCTACTTTGC 59.669 45.833 0.00 0.00 0.00 3.68
3904 3934 2.716217 ACAGGAATCAGCTACTTTGCC 58.284 47.619 0.00 0.00 0.00 4.52
3905 3935 1.667724 CAGGAATCAGCTACTTTGCCG 59.332 52.381 0.00 0.00 0.00 5.69
3906 3936 1.279271 AGGAATCAGCTACTTTGCCGT 59.721 47.619 0.00 0.00 0.00 5.68
3907 3937 1.666189 GGAATCAGCTACTTTGCCGTC 59.334 52.381 0.00 0.00 0.00 4.79
3908 3938 1.666189 GAATCAGCTACTTTGCCGTCC 59.334 52.381 0.00 0.00 0.00 4.79
3909 3939 0.460284 ATCAGCTACTTTGCCGTCCG 60.460 55.000 0.00 0.00 0.00 4.79
3910 3940 2.434359 AGCTACTTTGCCGTCCGC 60.434 61.111 0.00 0.00 38.31 5.54
3911 3941 3.497031 GCTACTTTGCCGTCCGCC 61.497 66.667 0.00 0.00 36.24 6.13
3912 3942 2.047655 CTACTTTGCCGTCCGCCA 60.048 61.111 0.00 0.00 36.24 5.69
3913 3943 1.449601 CTACTTTGCCGTCCGCCAT 60.450 57.895 0.00 0.00 36.24 4.40
3914 3944 1.705337 CTACTTTGCCGTCCGCCATG 61.705 60.000 0.00 0.00 36.24 3.66
3915 3945 3.814268 CTTTGCCGTCCGCCATGG 61.814 66.667 7.63 7.63 36.24 3.66
3932 3962 4.481112 GCGGACGGCAAAGGCATG 62.481 66.667 0.00 0.00 43.71 4.06
3933 3963 2.745884 CGGACGGCAAAGGCATGA 60.746 61.111 0.00 0.00 43.71 3.07
3934 3964 2.331893 CGGACGGCAAAGGCATGAA 61.332 57.895 0.00 0.00 43.71 2.57
3935 3965 1.212751 GGACGGCAAAGGCATGAAC 59.787 57.895 0.00 0.00 43.71 3.18
3936 3966 1.154225 GACGGCAAAGGCATGAACG 60.154 57.895 0.00 0.00 43.71 3.95
3937 3967 2.179018 CGGCAAAGGCATGAACGG 59.821 61.111 0.00 0.00 43.71 4.44
3938 3968 2.125952 GGCAAAGGCATGAACGGC 60.126 61.111 0.00 0.00 43.71 5.68
3939 3969 2.504681 GCAAAGGCATGAACGGCG 60.505 61.111 4.80 4.80 40.72 6.46
3940 3970 2.179018 CAAAGGCATGAACGGCGG 59.821 61.111 13.24 0.00 36.37 6.13
3941 3971 2.033448 AAAGGCATGAACGGCGGA 59.967 55.556 13.24 0.00 36.37 5.54
3942 3972 2.332654 AAAGGCATGAACGGCGGAC 61.333 57.895 13.24 5.13 36.37 4.79
3953 3983 4.699522 GGCGGACGGCAAAGACCT 62.700 66.667 13.57 0.00 46.16 3.85
3954 3984 2.668550 GCGGACGGCAAAGACCTT 60.669 61.111 0.00 0.00 42.87 3.50
3955 3985 2.258726 GCGGACGGCAAAGACCTTT 61.259 57.895 0.00 0.00 42.87 3.11
3964 3994 0.040067 CAAAGACCTTTGCCGTCAGC 60.040 55.000 9.25 0.00 42.66 4.26
3965 3995 1.172812 AAAGACCTTTGCCGTCAGCC 61.173 55.000 0.00 0.00 42.71 4.85
3966 3996 3.423154 GACCTTTGCCGTCAGCCG 61.423 66.667 0.00 0.00 42.71 5.52
3983 4013 4.103103 GCGGACGGCAAAAGGCTC 62.103 66.667 0.00 0.00 44.01 4.70
3984 4014 3.431725 CGGACGGCAAAAGGCTCC 61.432 66.667 0.00 0.00 44.01 4.70
3986 4016 3.431725 GACGGCAAAAGGCTCCGG 61.432 66.667 15.66 0.00 46.78 5.14
3989 4019 3.302344 GGCAAAAGGCTCCGGCAA 61.302 61.111 0.00 0.00 44.01 4.52
3990 4020 2.733945 GCAAAAGGCTCCGGCAAA 59.266 55.556 0.00 0.00 40.87 3.68
3991 4021 1.373371 GCAAAAGGCTCCGGCAAAG 60.373 57.895 0.00 0.00 40.87 2.77
3992 4022 2.041153 CAAAAGGCTCCGGCAAAGT 58.959 52.632 0.00 0.00 40.87 2.66
3993 4023 1.243902 CAAAAGGCTCCGGCAAAGTA 58.756 50.000 0.00 0.00 40.87 2.24
3994 4024 1.200020 CAAAAGGCTCCGGCAAAGTAG 59.800 52.381 0.00 0.00 40.87 2.57
3995 4025 0.322546 AAAGGCTCCGGCAAAGTAGG 60.323 55.000 0.00 0.00 40.87 3.18
3996 4026 2.821679 AAGGCTCCGGCAAAGTAGGC 62.822 60.000 0.00 0.00 40.87 3.93
3997 4027 2.269241 GCTCCGGCAAAGTAGGCT 59.731 61.111 0.00 0.00 38.54 4.58
3998 4028 1.520666 GCTCCGGCAAAGTAGGCTA 59.479 57.895 0.00 0.00 38.54 3.93
3999 4029 0.810426 GCTCCGGCAAAGTAGGCTAC 60.810 60.000 16.93 16.93 38.54 3.58
4000 4030 0.527817 CTCCGGCAAAGTAGGCTACG 60.528 60.000 18.41 6.37 0.00 3.51
4001 4031 1.520787 CCGGCAAAGTAGGCTACGG 60.521 63.158 18.41 11.37 0.00 4.02
4002 4032 1.217244 CGGCAAAGTAGGCTACGGT 59.783 57.895 18.41 8.42 0.00 4.83
4003 4033 0.457035 CGGCAAAGTAGGCTACGGTA 59.543 55.000 18.41 0.00 0.00 4.02
4004 4034 1.135024 CGGCAAAGTAGGCTACGGTAA 60.135 52.381 18.41 0.00 0.00 2.85
4005 4035 2.674747 CGGCAAAGTAGGCTACGGTAAA 60.675 50.000 18.41 0.00 0.00 2.01
4006 4036 3.538591 GGCAAAGTAGGCTACGGTAAAT 58.461 45.455 18.41 0.00 0.00 1.40
4007 4037 4.696455 GGCAAAGTAGGCTACGGTAAATA 58.304 43.478 18.41 0.00 0.00 1.40
4008 4038 4.748600 GGCAAAGTAGGCTACGGTAAATAG 59.251 45.833 18.41 5.93 0.00 1.73
4009 4039 4.210746 GCAAAGTAGGCTACGGTAAATAGC 59.789 45.833 18.41 11.28 43.66 2.97
4010 4040 5.598769 CAAAGTAGGCTACGGTAAATAGCT 58.401 41.667 18.41 0.00 43.83 3.32
4011 4041 6.736794 GCAAAGTAGGCTACGGTAAATAGCTA 60.737 42.308 18.41 0.00 43.83 3.32
4012 4042 5.956068 AGTAGGCTACGGTAAATAGCTAC 57.044 43.478 18.41 0.00 43.83 3.58
4013 4043 5.629125 AGTAGGCTACGGTAAATAGCTACT 58.371 41.667 18.41 0.00 43.83 2.57
4014 4044 6.067350 AGTAGGCTACGGTAAATAGCTACTT 58.933 40.000 18.41 0.00 43.83 2.24
4015 4045 5.866159 AGGCTACGGTAAATAGCTACTTT 57.134 39.130 0.00 1.17 43.83 2.66
4016 4046 5.598769 AGGCTACGGTAAATAGCTACTTTG 58.401 41.667 0.00 0.00 43.83 2.77
4017 4047 4.210746 GGCTACGGTAAATAGCTACTTTGC 59.789 45.833 0.00 2.26 43.83 3.68
4018 4048 4.210746 GCTACGGTAAATAGCTACTTTGCC 59.789 45.833 17.66 17.66 41.59 4.52
4019 4049 4.210724 ACGGTAAATAGCTACTTTGCCA 57.789 40.909 22.66 0.00 38.00 4.92
4020 4050 3.937079 ACGGTAAATAGCTACTTTGCCAC 59.063 43.478 22.66 6.75 38.00 5.01
4021 4051 4.189231 CGGTAAATAGCTACTTTGCCACT 58.811 43.478 22.66 0.00 38.00 4.00
4022 4052 4.270325 CGGTAAATAGCTACTTTGCCACTC 59.730 45.833 22.66 7.75 38.00 3.51
4023 4053 4.575236 GGTAAATAGCTACTTTGCCACTCC 59.425 45.833 20.36 8.43 38.01 3.85
4024 4054 2.604046 ATAGCTACTTTGCCACTCCG 57.396 50.000 0.00 0.00 0.00 4.63
4025 4055 0.108329 TAGCTACTTTGCCACTCCGC 60.108 55.000 0.00 0.00 0.00 5.54
4026 4056 1.376037 GCTACTTTGCCACTCCGCT 60.376 57.895 0.00 0.00 0.00 5.52
4027 4057 0.108329 GCTACTTTGCCACTCCGCTA 60.108 55.000 0.00 0.00 0.00 4.26
4028 4058 1.641577 CTACTTTGCCACTCCGCTAC 58.358 55.000 0.00 0.00 0.00 3.58
4029 4059 1.204941 CTACTTTGCCACTCCGCTACT 59.795 52.381 0.00 0.00 0.00 2.57
4030 4060 0.320771 ACTTTGCCACTCCGCTACTG 60.321 55.000 0.00 0.00 0.00 2.74
4031 4061 0.037326 CTTTGCCACTCCGCTACTGA 60.037 55.000 0.00 0.00 0.00 3.41
4032 4062 0.613260 TTTGCCACTCCGCTACTGAT 59.387 50.000 0.00 0.00 0.00 2.90
4033 4063 0.108186 TTGCCACTCCGCTACTGATG 60.108 55.000 0.00 0.00 0.00 3.07
4034 4064 1.227380 GCCACTCCGCTACTGATGG 60.227 63.158 0.00 0.00 0.00 3.51
4035 4065 1.227380 CCACTCCGCTACTGATGGC 60.227 63.158 0.00 0.00 0.00 4.40
4036 4066 1.517361 CACTCCGCTACTGATGGCA 59.483 57.895 0.00 0.00 31.28 4.92
4037 4067 0.108186 CACTCCGCTACTGATGGCAA 60.108 55.000 0.00 0.00 31.28 4.52
4038 4068 0.613260 ACTCCGCTACTGATGGCAAA 59.387 50.000 0.00 0.00 31.28 3.68
4039 4069 1.293924 CTCCGCTACTGATGGCAAAG 58.706 55.000 0.00 0.00 31.28 2.77
4040 4070 0.613260 TCCGCTACTGATGGCAAAGT 59.387 50.000 10.57 10.57 31.28 2.66
4041 4071 1.009829 CCGCTACTGATGGCAAAGTC 58.990 55.000 9.23 0.00 31.28 3.01
4042 4072 1.406069 CCGCTACTGATGGCAAAGTCT 60.406 52.381 9.23 0.00 31.28 3.24
4043 4073 2.350522 CGCTACTGATGGCAAAGTCTT 58.649 47.619 9.23 0.00 31.28 3.01
4044 4074 2.744202 CGCTACTGATGGCAAAGTCTTT 59.256 45.455 9.23 0.00 31.28 2.52
4045 4075 3.425359 CGCTACTGATGGCAAAGTCTTTG 60.425 47.826 19.20 19.20 43.44 2.77
4053 4083 3.461843 CAAAGTCTTTGCCGTCTGC 57.538 52.632 12.26 0.00 41.77 4.26
4066 4096 4.617520 TCTGCAGCGGACGGCAAA 62.618 61.111 9.47 0.00 46.54 3.68
4067 4097 4.093952 CTGCAGCGGACGGCAAAG 62.094 66.667 0.00 0.00 46.54 2.77
4068 4098 4.617520 TGCAGCGGACGGCAAAGA 62.618 61.111 7.81 0.00 44.30 2.52
4072 4102 3.491652 GCGGACGGCAAAGAGAGC 61.492 66.667 0.00 0.00 42.87 4.09
4073 4103 3.181967 CGGACGGCAAAGAGAGCG 61.182 66.667 0.00 0.00 0.00 5.03
4074 4104 2.815647 GGACGGCAAAGAGAGCGG 60.816 66.667 0.00 0.00 38.17 5.52
4075 4105 2.261671 GACGGCAAAGAGAGCGGA 59.738 61.111 0.00 0.00 36.34 5.54
4076 4106 2.048127 ACGGCAAAGAGAGCGGAC 60.048 61.111 0.00 0.00 36.34 4.79
4077 4107 3.181967 CGGCAAAGAGAGCGGACG 61.182 66.667 0.00 0.00 34.65 4.79
4078 4108 2.815647 GGCAAAGAGAGCGGACGG 60.816 66.667 0.00 0.00 0.00 4.79
4079 4109 3.491652 GCAAAGAGAGCGGACGGC 61.492 66.667 0.00 0.00 44.05 5.68
4099 4129 3.056952 CAATAATTGCGCTGTCAGTCC 57.943 47.619 9.73 0.00 0.00 3.85
4100 4130 1.290203 ATAATTGCGCTGTCAGTCCG 58.710 50.000 9.73 0.00 0.00 4.79
4101 4131 0.037697 TAATTGCGCTGTCAGTCCGT 60.038 50.000 9.73 0.00 0.00 4.69
4102 4132 0.884704 AATTGCGCTGTCAGTCCGTT 60.885 50.000 9.73 0.00 0.00 4.44
4103 4133 0.037697 ATTGCGCTGTCAGTCCGTTA 60.038 50.000 9.73 0.00 0.00 3.18
4104 4134 0.249531 TTGCGCTGTCAGTCCGTTAA 60.250 50.000 9.73 0.00 0.00 2.01
4105 4135 0.666274 TGCGCTGTCAGTCCGTTAAG 60.666 55.000 9.73 0.00 0.00 1.85
4106 4136 0.666577 GCGCTGTCAGTCCGTTAAGT 60.667 55.000 0.00 0.00 0.00 2.24
4107 4137 1.060713 CGCTGTCAGTCCGTTAAGTG 58.939 55.000 0.93 0.00 0.00 3.16
4108 4138 1.429463 GCTGTCAGTCCGTTAAGTGG 58.571 55.000 0.93 0.00 0.00 4.00
4109 4139 1.429463 CTGTCAGTCCGTTAAGTGGC 58.571 55.000 0.00 0.00 0.00 5.01
4110 4140 1.000955 CTGTCAGTCCGTTAAGTGGCT 59.999 52.381 0.00 0.00 0.00 4.75
4111 4141 2.230508 CTGTCAGTCCGTTAAGTGGCTA 59.769 50.000 0.00 0.00 0.00 3.93
4112 4142 2.629137 TGTCAGTCCGTTAAGTGGCTAA 59.371 45.455 0.00 0.00 0.00 3.09
4113 4143 2.991866 GTCAGTCCGTTAAGTGGCTAAC 59.008 50.000 0.00 0.00 0.00 2.34
4117 4147 2.830264 CGTTAAGTGGCTAACGGCA 58.170 52.632 9.02 0.00 46.58 5.69
4118 4148 0.719465 CGTTAAGTGGCTAACGGCAG 59.281 55.000 9.02 0.00 46.58 4.85
4119 4149 2.594403 CGTTAAGTGGCTAACGGCAGG 61.594 57.143 9.02 0.00 46.58 4.85
4123 4153 3.646715 TGGCTAACGGCAGGCCTT 61.647 61.111 0.00 4.70 45.45 4.35
4124 4154 2.361230 GGCTAACGGCAGGCCTTT 60.361 61.111 0.00 8.02 44.01 3.11
4125 4155 2.700773 GGCTAACGGCAGGCCTTTG 61.701 63.158 0.00 0.00 44.01 2.77
4126 4156 2.877691 CTAACGGCAGGCCTTTGC 59.122 61.111 0.00 5.18 43.34 3.68
4152 4182 3.773117 CGCTGACGGCAAAATTTCT 57.227 47.368 7.13 0.00 41.91 2.52
4153 4183 2.892373 CGCTGACGGCAAAATTTCTA 57.108 45.000 7.13 0.00 41.91 2.10
4154 4184 2.774007 CGCTGACGGCAAAATTTCTAG 58.226 47.619 7.13 0.00 41.91 2.43
4155 4185 2.159627 CGCTGACGGCAAAATTTCTAGT 59.840 45.455 7.13 0.00 41.91 2.57
4156 4186 3.492313 GCTGACGGCAAAATTTCTAGTG 58.508 45.455 0.00 0.00 41.35 2.74
4157 4187 3.058224 GCTGACGGCAAAATTTCTAGTGT 60.058 43.478 0.00 0.00 41.35 3.55
4158 4188 4.712763 CTGACGGCAAAATTTCTAGTGTC 58.287 43.478 0.00 0.00 0.00 3.67
4159 4189 4.385825 TGACGGCAAAATTTCTAGTGTCT 58.614 39.130 0.00 0.00 0.00 3.41
4160 4190 4.819630 TGACGGCAAAATTTCTAGTGTCTT 59.180 37.500 0.00 0.00 0.00 3.01
4161 4191 5.298276 TGACGGCAAAATTTCTAGTGTCTTT 59.702 36.000 0.00 0.00 0.00 2.52
4162 4192 5.519722 ACGGCAAAATTTCTAGTGTCTTTG 58.480 37.500 0.00 0.00 0.00 2.77
4163 4193 4.382754 CGGCAAAATTTCTAGTGTCTTTGC 59.617 41.667 18.38 18.38 44.88 3.68
4164 4194 5.829233 GCAAAATTTCTAGTGTCTTTGCC 57.171 39.130 16.96 6.44 41.60 4.52
4165 4195 4.382754 GCAAAATTTCTAGTGTCTTTGCCG 59.617 41.667 16.96 0.00 41.60 5.69
4166 4196 5.519722 CAAAATTTCTAGTGTCTTTGCCGT 58.480 37.500 0.00 0.00 0.00 5.68
4167 4197 5.358298 AAATTTCTAGTGTCTTTGCCGTC 57.642 39.130 0.00 0.00 0.00 4.79
4168 4198 3.746045 TTTCTAGTGTCTTTGCCGTCT 57.254 42.857 0.00 0.00 0.00 4.18
4169 4199 2.724977 TCTAGTGTCTTTGCCGTCTG 57.275 50.000 0.00 0.00 0.00 3.51
4170 4200 1.071605 CTAGTGTCTTTGCCGTCTGC 58.928 55.000 0.00 0.00 41.77 4.26
4171 4201 0.320421 TAGTGTCTTTGCCGTCTGCC 60.320 55.000 0.00 0.00 40.16 4.85
4172 4202 2.664851 TGTCTTTGCCGTCTGCCG 60.665 61.111 0.00 0.00 40.16 5.69
4173 4203 4.090057 GTCTTTGCCGTCTGCCGC 62.090 66.667 0.00 0.00 40.16 6.53
4174 4204 4.314440 TCTTTGCCGTCTGCCGCT 62.314 61.111 0.00 0.00 40.16 5.52
4175 4205 4.093952 CTTTGCCGTCTGCCGCTG 62.094 66.667 0.00 0.00 40.16 5.18
4176 4206 4.617520 TTTGCCGTCTGCCGCTGA 62.618 61.111 0.00 0.00 40.16 4.26
4177 4207 3.899981 TTTGCCGTCTGCCGCTGAT 62.900 57.895 3.03 0.00 40.16 2.90
4180 4210 2.887568 CCGTCTGCCGCTGATGTC 60.888 66.667 15.83 0.00 34.38 3.06
4181 4211 2.125952 CGTCTGCCGCTGATGTCA 60.126 61.111 10.51 0.00 0.00 3.58
4182 4212 1.520120 CGTCTGCCGCTGATGTCAT 60.520 57.895 10.51 0.00 0.00 3.06
4183 4213 1.485838 CGTCTGCCGCTGATGTCATC 61.486 60.000 5.83 5.83 0.00 2.92
4184 4214 0.179089 GTCTGCCGCTGATGTCATCT 60.179 55.000 13.90 0.00 0.00 2.90
4185 4215 1.067669 GTCTGCCGCTGATGTCATCTA 59.932 52.381 13.90 0.36 0.00 1.98
4186 4216 1.067669 TCTGCCGCTGATGTCATCTAC 59.932 52.381 13.90 5.19 0.00 2.59
4187 4217 0.823460 TGCCGCTGATGTCATCTACA 59.177 50.000 13.90 2.79 43.86 2.74
4188 4218 1.212616 GCCGCTGATGTCATCTACAC 58.787 55.000 13.90 0.63 42.09 2.90
4189 4219 1.481240 CCGCTGATGTCATCTACACG 58.519 55.000 13.90 11.09 42.09 4.49
4190 4220 1.202302 CCGCTGATGTCATCTACACGT 60.202 52.381 13.90 0.00 42.09 4.49
4191 4221 2.112522 CGCTGATGTCATCTACACGTC 58.887 52.381 13.90 0.00 42.09 4.34
4192 4222 2.477863 CGCTGATGTCATCTACACGTCA 60.478 50.000 13.90 0.00 42.09 4.35
4193 4223 2.854777 GCTGATGTCATCTACACGTCAC 59.145 50.000 13.90 0.00 42.09 3.67
4194 4224 3.428180 GCTGATGTCATCTACACGTCACT 60.428 47.826 13.90 0.00 42.09 3.41
4195 4225 4.201920 GCTGATGTCATCTACACGTCACTA 60.202 45.833 13.90 0.00 42.09 2.74
4196 4226 5.231265 TGATGTCATCTACACGTCACTAC 57.769 43.478 13.90 0.00 42.09 2.73
4197 4227 4.698304 TGATGTCATCTACACGTCACTACA 59.302 41.667 13.90 0.00 42.09 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
327 338 5.221165 GCAGGTTCTTTTAGGCAACAACTAA 60.221 40.000 0.00 0.00 41.41 2.24
379 390 4.567159 GCAAATCACCTTCCTAGTCGTAAG 59.433 45.833 0.00 0.00 0.00 2.34
552 563 3.499338 TGCCTCTGAACATTGGTGATTT 58.501 40.909 0.00 0.00 0.00 2.17
681 692 4.021229 AGCCAGCAATCTGAATGATTCAA 58.979 39.130 9.39 1.43 43.00 2.69
695 706 3.664888 AGCCCCATGAGCCAGCAA 61.665 61.111 0.00 0.00 0.00 3.91
696 707 4.435970 CAGCCCCATGAGCCAGCA 62.436 66.667 0.00 0.00 0.00 4.41
750 761 2.125552 CGAGAATGGCAGCGTCCA 60.126 61.111 2.48 2.48 40.97 4.02
802 813 3.817647 GTCATTCAGAAAACTCACCTGCT 59.182 43.478 0.00 0.00 0.00 4.24
827 838 2.029649 GGCCGTTCAACTACACTGTCTA 60.030 50.000 0.00 0.00 0.00 2.59
899 911 2.682494 GTCACCGCCTCCCCACTA 60.682 66.667 0.00 0.00 0.00 2.74
971 983 2.017049 GCAGAACAAGTTGTCACCACT 58.983 47.619 9.40 1.92 0.00 4.00
1528 1541 1.692042 CTCCCTCCCCAGCAGATGT 60.692 63.158 0.00 0.00 0.00 3.06
1572 1585 2.204306 CCCCCAACTTCCTCCCCT 60.204 66.667 0.00 0.00 0.00 4.79
1637 1650 1.913762 CCCACCTCTCTTCACCGGT 60.914 63.158 0.00 0.00 0.00 5.28
1728 1741 2.364961 CCTCCTCGAACCTCCCCT 59.635 66.667 0.00 0.00 0.00 4.79
1779 1792 3.593442 AAAATCAGACCAACCTCACCA 57.407 42.857 0.00 0.00 0.00 4.17
1807 1820 2.183478 TGTGACATTTCTGGATGCGT 57.817 45.000 0.00 0.00 0.00 5.24
1820 1833 4.219944 GTCTATATAAGCCCCGATGTGACA 59.780 45.833 0.00 0.00 0.00 3.58
1832 1845 5.011090 TGGATCATGGCGTCTATATAAGC 57.989 43.478 0.00 0.00 0.00 3.09
1909 1922 2.070028 TGTACACACACACACACACAC 58.930 47.619 0.00 0.00 0.00 3.82
1923 1936 8.528917 TCAGAATAGTGTTTATGTGTGTACAC 57.471 34.615 19.36 19.36 46.59 2.90
1925 1938 9.366216 TGATCAGAATAGTGTTTATGTGTGTAC 57.634 33.333 0.00 0.00 0.00 2.90
1989 2010 2.628696 TTCAGGCGCGTTACTCGGA 61.629 57.895 8.43 0.00 40.26 4.55
2085 2106 5.418840 GGATTACAGTCACATCCCAAACAAT 59.581 40.000 0.00 0.00 31.66 2.71
2171 2192 2.183679 AGTTCATCCACCCAGAGAGTC 58.816 52.381 0.00 0.00 0.00 3.36
2178 2199 1.774254 AGACACAAGTTCATCCACCCA 59.226 47.619 0.00 0.00 0.00 4.51
2217 2238 5.606348 GAGGTTCTAGAACATCCAGTGAT 57.394 43.478 30.82 10.00 43.82 3.06
2322 2343 0.032952 CACTCCCACGGACGAAGAAA 59.967 55.000 0.00 0.00 0.00 2.52
2349 2371 6.775594 AAACTAACAAATCCATAGAAGCCC 57.224 37.500 0.00 0.00 0.00 5.19
2369 2391 3.125316 CGCCCTCTATGTTCACAGAAAAC 59.875 47.826 0.00 0.00 0.00 2.43
2393 2415 5.412594 TCCAATCTCACTACTGCAATCAAAC 59.587 40.000 0.00 0.00 0.00 2.93
2420 2442 7.489113 GTCCAATCAAATTAAGAACGCATGAAT 59.511 33.333 0.00 0.00 0.00 2.57
2431 2453 9.480053 ACAATTCACTTGTCCAATCAAATTAAG 57.520 29.630 0.00 0.00 44.99 1.85
2460 2482 0.384669 GTGACTTAGGATCGGGGTCG 59.615 60.000 0.00 0.00 37.82 4.79
2522 2544 0.902984 ACCCATGAGACTACCGTGCA 60.903 55.000 0.00 0.00 0.00 4.57
2531 2553 0.618458 TAAGGTGGCACCCATGAGAC 59.382 55.000 32.30 5.56 39.75 3.36
2534 2556 0.844661 AGGTAAGGTGGCACCCATGA 60.845 55.000 32.30 12.91 39.75 3.07
2586 2608 5.039984 GGATGCTAGCGACACTATCATATG 58.960 45.833 10.77 0.00 37.73 1.78
2630 2652 4.084287 TGGGTTTACGACTAGTCATGTCT 58.916 43.478 22.37 0.00 32.70 3.41
2690 2712 1.282930 GACCGACACGTTCCTTGCTC 61.283 60.000 0.00 0.00 0.00 4.26
2696 2718 0.038526 ACTGATGACCGACACGTTCC 60.039 55.000 0.00 0.00 0.00 3.62
2759 2781 1.974236 AGCCTGCTATAGCTCGGATTT 59.026 47.619 27.29 14.53 42.66 2.17
2766 2788 2.630580 GTCCTGTTAGCCTGCTATAGCT 59.369 50.000 24.61 7.81 43.20 3.32
2809 2835 1.548719 TGTGTATGTCCCTTCGTGGAG 59.451 52.381 0.00 0.00 38.35 3.86
2813 2839 3.070446 TGTTCTTGTGTATGTCCCTTCGT 59.930 43.478 0.00 0.00 0.00 3.85
2824 2850 5.492895 TGTGTCCTTCTTTGTTCTTGTGTA 58.507 37.500 0.00 0.00 0.00 2.90
2910 2937 4.323868 GCCTCTCTTACTGGGAAATGTCTT 60.324 45.833 0.00 0.00 0.00 3.01
2922 2949 3.759815 TCCTTGGTAGCCTCTCTTACT 57.240 47.619 0.00 0.00 0.00 2.24
2966 2993 7.459795 TGATTTGAAATGCTTGGTATGTGTA 57.540 32.000 0.00 0.00 0.00 2.90
3070 3097 1.529226 ATATCTCACTCCTCGGAGCG 58.471 55.000 12.78 3.74 45.54 5.03
3082 3109 7.194112 TGAGACCCATGTTTGTAATATCTCA 57.806 36.000 0.00 0.00 38.12 3.27
3194 3221 3.664551 TCTGGTAGCTAGTCAGGCTAA 57.335 47.619 18.52 2.97 42.79 3.09
3195 3222 3.498841 GGATCTGGTAGCTAGTCAGGCTA 60.499 52.174 18.52 5.66 40.74 3.93
3219 3246 0.968901 TACGATCTTGTGCCCTCGGT 60.969 55.000 0.00 0.00 35.52 4.69
3267 3294 1.467734 CTCGCTAGTAGTTCCGTGTGT 59.532 52.381 0.00 0.00 0.00 3.72
3296 3323 7.380536 TGCTGAATTTATGTTTTTGCAGAGAT 58.619 30.769 0.00 0.00 0.00 2.75
3342 3371 7.501844 AGTTAGTTCTGAAGTAAGTCTTGCTT 58.498 34.615 14.92 14.92 38.33 3.91
3355 3384 9.836864 AATGATGCATATGTAGTTAGTTCTGAA 57.163 29.630 0.00 0.00 0.00 3.02
3464 3493 1.659794 GTGTGCGCCACCTCAAAAT 59.340 52.632 15.54 0.00 38.18 1.82
3496 3525 4.338118 CCATAGTGGCGTATTGAAATGGTT 59.662 41.667 0.00 0.00 0.00 3.67
3510 3539 4.683432 GAGCGGATCCATAGTGGC 57.317 61.111 13.41 5.71 37.47 5.01
3538 3568 0.731855 GCTACGGACGGTGTTCTCAC 60.732 60.000 0.00 0.00 43.19 3.51
3546 3576 1.900016 TGTGAGTGCTACGGACGGT 60.900 57.895 0.00 0.00 0.00 4.83
3549 3579 3.128938 AGATAAGTGTGAGTGCTACGGAC 59.871 47.826 0.00 0.00 0.00 4.79
3553 3583 3.304559 CGCAAGATAAGTGTGAGTGCTAC 59.695 47.826 0.00 0.00 43.02 3.58
3564 3594 4.270008 ACCCTAAAATGCGCAAGATAAGT 58.730 39.130 17.11 4.09 43.02 2.24
3588 3618 4.757149 AGTTCATAGACAAGTGAAAGTGGC 59.243 41.667 0.00 0.00 36.23 5.01
3640 3670 5.704053 TGATCTATTCGAATAGTAGCGTCCA 59.296 40.000 33.42 21.42 39.47 4.02
3763 3793 0.971447 GGTCGTGGCTAACTCCCTCT 60.971 60.000 0.00 0.00 0.00 3.69
3772 3802 1.180029 GGTTAGTCAGGTCGTGGCTA 58.820 55.000 2.76 2.76 40.29 3.93
3773 3803 0.830444 TGGTTAGTCAGGTCGTGGCT 60.830 55.000 4.85 4.85 45.66 4.75
3838 3868 2.142761 CCATGGCCGGATCTCCTCA 61.143 63.158 5.05 0.00 0.00 3.86
3854 3884 1.223487 GGGGCTATGAGCGAAACCA 59.777 57.895 0.00 0.00 43.62 3.67
3866 3896 3.308117 CCTGTAGTGATTGTTTGGGGCTA 60.308 47.826 0.00 0.00 0.00 3.93
3877 3907 6.552445 AAGTAGCTGATTCCTGTAGTGATT 57.448 37.500 0.00 0.00 0.00 2.57
3880 3910 4.331168 GCAAAGTAGCTGATTCCTGTAGTG 59.669 45.833 0.00 0.00 0.00 2.74
3881 3911 4.508662 GCAAAGTAGCTGATTCCTGTAGT 58.491 43.478 0.00 0.00 0.00 2.73
3882 3912 3.873952 GGCAAAGTAGCTGATTCCTGTAG 59.126 47.826 0.00 0.00 34.17 2.74
3889 3919 1.739067 GGACGGCAAAGTAGCTGATT 58.261 50.000 0.00 0.00 43.63 2.57
3890 3920 0.460284 CGGACGGCAAAGTAGCTGAT 60.460 55.000 0.00 0.00 43.63 2.90
3891 3921 1.080093 CGGACGGCAAAGTAGCTGA 60.080 57.895 0.00 0.00 43.63 4.26
3892 3922 2.740714 GCGGACGGCAAAGTAGCTG 61.741 63.158 0.00 0.00 46.31 4.24
3893 3923 2.434359 GCGGACGGCAAAGTAGCT 60.434 61.111 0.00 0.00 42.87 3.32
3894 3924 3.497031 GGCGGACGGCAAAGTAGC 61.497 66.667 13.57 0.00 46.16 3.58
3910 3940 3.814268 CTTTGCCGTCCGCCATGG 61.814 66.667 7.63 7.63 36.24 3.66
3911 3941 3.814268 CCTTTGCCGTCCGCCATG 61.814 66.667 0.00 0.00 36.24 3.66
3915 3945 4.481112 CATGCCTTTGCCGTCCGC 62.481 66.667 0.00 0.00 36.33 5.54
3916 3946 2.331893 TTCATGCCTTTGCCGTCCG 61.332 57.895 0.00 0.00 36.33 4.79
3917 3947 1.212751 GTTCATGCCTTTGCCGTCC 59.787 57.895 0.00 0.00 36.33 4.79
3918 3948 1.154225 CGTTCATGCCTTTGCCGTC 60.154 57.895 0.00 0.00 36.33 4.79
3919 3949 2.625823 CCGTTCATGCCTTTGCCGT 61.626 57.895 0.00 0.00 36.33 5.68
3920 3950 2.179018 CCGTTCATGCCTTTGCCG 59.821 61.111 0.00 0.00 36.33 5.69
3921 3951 2.125952 GCCGTTCATGCCTTTGCC 60.126 61.111 0.00 0.00 36.33 4.52
3922 3952 2.504681 CGCCGTTCATGCCTTTGC 60.505 61.111 0.00 0.00 38.26 3.68
3923 3953 2.179018 CCGCCGTTCATGCCTTTG 59.821 61.111 0.00 0.00 0.00 2.77
3924 3954 2.033448 TCCGCCGTTCATGCCTTT 59.967 55.556 0.00 0.00 0.00 3.11
3925 3955 2.746277 GTCCGCCGTTCATGCCTT 60.746 61.111 0.00 0.00 0.00 4.35
3930 3960 4.690719 TTGCCGTCCGCCGTTCAT 62.691 61.111 0.00 0.00 36.24 2.57
3931 3961 4.912485 TTTGCCGTCCGCCGTTCA 62.912 61.111 0.00 0.00 36.24 3.18
3932 3962 4.084888 CTTTGCCGTCCGCCGTTC 62.085 66.667 0.00 0.00 36.24 3.95
3933 3963 4.612412 TCTTTGCCGTCCGCCGTT 62.612 61.111 0.00 0.00 36.24 4.44
3936 3966 4.699522 AGGTCTTTGCCGTCCGCC 62.700 66.667 0.00 0.00 36.24 6.13
3937 3967 2.258726 AAAGGTCTTTGCCGTCCGC 61.259 57.895 0.00 0.00 38.31 5.54
3938 3968 1.574428 CAAAGGTCTTTGCCGTCCG 59.426 57.895 10.05 0.00 42.66 4.79
3946 3976 1.172812 GGCTGACGGCAAAGGTCTTT 61.173 55.000 8.86 0.00 44.01 2.52
3947 3977 1.600916 GGCTGACGGCAAAGGTCTT 60.601 57.895 8.86 0.00 44.01 3.01
3948 3978 2.032681 GGCTGACGGCAAAGGTCT 59.967 61.111 8.86 0.00 44.01 3.85
3949 3979 3.423154 CGGCTGACGGCAAAGGTC 61.423 66.667 8.86 0.00 44.01 3.85
3966 3996 4.103103 GAGCCTTTTGCCGTCCGC 62.103 66.667 0.00 0.00 42.71 5.54
3967 3997 3.431725 GGAGCCTTTTGCCGTCCG 61.432 66.667 0.00 0.00 42.71 4.79
3968 3998 3.431725 CGGAGCCTTTTGCCGTCC 61.432 66.667 0.00 0.00 42.71 4.79
3969 3999 3.431725 CCGGAGCCTTTTGCCGTC 61.432 66.667 0.00 0.00 43.35 4.79
3972 4002 2.770132 CTTTGCCGGAGCCTTTTGCC 62.770 60.000 5.05 0.00 42.71 4.52
3973 4003 1.373371 CTTTGCCGGAGCCTTTTGC 60.373 57.895 5.05 0.00 38.69 3.68
3974 4004 1.200020 CTACTTTGCCGGAGCCTTTTG 59.800 52.381 5.05 0.00 38.69 2.44
3975 4005 1.534729 CTACTTTGCCGGAGCCTTTT 58.465 50.000 5.05 0.00 38.69 2.27
3976 4006 0.322546 CCTACTTTGCCGGAGCCTTT 60.323 55.000 5.05 0.00 38.69 3.11
3977 4007 1.299976 CCTACTTTGCCGGAGCCTT 59.700 57.895 5.05 0.00 38.69 4.35
3978 4008 2.990479 CCTACTTTGCCGGAGCCT 59.010 61.111 5.05 0.00 38.69 4.58
3979 4009 1.968050 TAGCCTACTTTGCCGGAGCC 61.968 60.000 5.05 0.00 38.69 4.70
3980 4010 0.810426 GTAGCCTACTTTGCCGGAGC 60.810 60.000 5.05 0.00 40.48 4.70
3981 4011 0.527817 CGTAGCCTACTTTGCCGGAG 60.528 60.000 5.05 0.00 0.00 4.63
3982 4012 1.514087 CGTAGCCTACTTTGCCGGA 59.486 57.895 5.05 0.00 0.00 5.14
3983 4013 1.520787 CCGTAGCCTACTTTGCCGG 60.521 63.158 0.00 0.00 0.00 6.13
3984 4014 0.457035 TACCGTAGCCTACTTTGCCG 59.543 55.000 0.00 0.00 0.00 5.69
3985 4015 2.678471 TTACCGTAGCCTACTTTGCC 57.322 50.000 0.00 0.00 0.00 4.52
3986 4016 4.210746 GCTATTTACCGTAGCCTACTTTGC 59.789 45.833 0.00 0.00 38.85 3.68
3987 4017 5.598769 AGCTATTTACCGTAGCCTACTTTG 58.401 41.667 0.00 0.00 44.35 2.77
3988 4018 5.866159 AGCTATTTACCGTAGCCTACTTT 57.134 39.130 0.00 0.00 44.35 2.66
3989 4019 6.067350 AGTAGCTATTTACCGTAGCCTACTT 58.933 40.000 0.00 0.00 44.35 2.24
3990 4020 5.629125 AGTAGCTATTTACCGTAGCCTACT 58.371 41.667 0.00 6.52 44.35 2.57
3991 4021 5.956068 AGTAGCTATTTACCGTAGCCTAC 57.044 43.478 0.00 0.00 44.35 3.18
3992 4022 6.736794 GCAAAGTAGCTATTTACCGTAGCCTA 60.737 42.308 1.46 0.00 44.35 3.93
3993 4023 5.598769 CAAAGTAGCTATTTACCGTAGCCT 58.401 41.667 1.46 0.00 44.35 4.58
3994 4024 4.210746 GCAAAGTAGCTATTTACCGTAGCC 59.789 45.833 1.46 0.00 44.35 3.93
3995 4025 4.210746 GGCAAAGTAGCTATTTACCGTAGC 59.789 45.833 1.46 0.00 43.77 3.58
3996 4026 5.233689 GTGGCAAAGTAGCTATTTACCGTAG 59.766 44.000 1.46 0.00 34.17 3.51
3997 4027 5.105228 AGTGGCAAAGTAGCTATTTACCGTA 60.105 40.000 1.46 0.00 34.17 4.02
3998 4028 3.937079 GTGGCAAAGTAGCTATTTACCGT 59.063 43.478 1.46 0.00 34.17 4.83
3999 4029 4.189231 AGTGGCAAAGTAGCTATTTACCG 58.811 43.478 1.46 0.00 34.17 4.02
4000 4030 4.575236 GGAGTGGCAAAGTAGCTATTTACC 59.425 45.833 11.82 11.82 34.17 2.85
4001 4031 4.270325 CGGAGTGGCAAAGTAGCTATTTAC 59.730 45.833 1.46 0.00 34.17 2.01
4002 4032 4.439057 CGGAGTGGCAAAGTAGCTATTTA 58.561 43.478 1.46 0.00 34.17 1.40
4003 4033 3.270877 CGGAGTGGCAAAGTAGCTATTT 58.729 45.455 0.00 0.00 34.17 1.40
4004 4034 2.906354 CGGAGTGGCAAAGTAGCTATT 58.094 47.619 0.00 0.00 34.17 1.73
4005 4035 1.473434 GCGGAGTGGCAAAGTAGCTAT 60.473 52.381 0.00 0.00 34.17 2.97
4006 4036 0.108329 GCGGAGTGGCAAAGTAGCTA 60.108 55.000 0.00 0.00 34.17 3.32
4007 4037 1.376037 GCGGAGTGGCAAAGTAGCT 60.376 57.895 0.00 0.00 34.17 3.32
4008 4038 0.108329 TAGCGGAGTGGCAAAGTAGC 60.108 55.000 0.00 0.00 34.64 3.58
4009 4039 1.204941 AGTAGCGGAGTGGCAAAGTAG 59.795 52.381 0.00 0.00 34.64 2.57
4010 4040 1.067142 CAGTAGCGGAGTGGCAAAGTA 60.067 52.381 0.00 0.00 34.64 2.24
4011 4041 0.320771 CAGTAGCGGAGTGGCAAAGT 60.321 55.000 0.00 0.00 34.64 2.66
4012 4042 0.037326 TCAGTAGCGGAGTGGCAAAG 60.037 55.000 0.00 0.00 34.64 2.77
4013 4043 0.613260 ATCAGTAGCGGAGTGGCAAA 59.387 50.000 0.00 0.00 34.64 3.68
4014 4044 0.108186 CATCAGTAGCGGAGTGGCAA 60.108 55.000 0.00 0.00 34.64 4.52
4015 4045 1.517361 CATCAGTAGCGGAGTGGCA 59.483 57.895 0.00 0.00 34.64 4.92
4016 4046 1.227380 CCATCAGTAGCGGAGTGGC 60.227 63.158 0.00 0.00 0.00 5.01
4017 4047 1.227380 GCCATCAGTAGCGGAGTGG 60.227 63.158 0.00 0.00 0.00 4.00
4018 4048 0.108186 TTGCCATCAGTAGCGGAGTG 60.108 55.000 0.00 0.00 0.00 3.51
4019 4049 0.613260 TTTGCCATCAGTAGCGGAGT 59.387 50.000 0.00 0.00 0.00 3.85
4020 4050 1.293924 CTTTGCCATCAGTAGCGGAG 58.706 55.000 0.00 0.00 0.00 4.63
4021 4051 0.613260 ACTTTGCCATCAGTAGCGGA 59.387 50.000 0.00 0.00 0.00 5.54
4022 4052 1.009829 GACTTTGCCATCAGTAGCGG 58.990 55.000 0.00 0.00 0.00 5.52
4023 4053 2.015736 AGACTTTGCCATCAGTAGCG 57.984 50.000 0.00 0.00 0.00 4.26
4024 4054 4.088823 CAAAGACTTTGCCATCAGTAGC 57.911 45.455 14.73 0.00 33.36 3.58
4035 4065 3.461843 GCAGACGGCAAAGACTTTG 57.538 52.632 21.34 21.34 43.97 2.77
4049 4079 4.617520 TTTGCCGTCCGCTGCAGA 62.618 61.111 20.43 0.00 36.27 4.26
4050 4080 4.093952 CTTTGCCGTCCGCTGCAG 62.094 66.667 10.11 10.11 36.27 4.41
4051 4081 4.617520 TCTTTGCCGTCCGCTGCA 62.618 61.111 0.00 0.00 38.78 4.41
4052 4082 3.793144 CTCTTTGCCGTCCGCTGC 61.793 66.667 0.00 0.00 38.78 5.25
4053 4083 2.048222 TCTCTTTGCCGTCCGCTG 60.048 61.111 0.00 0.00 38.78 5.18
4054 4084 2.262915 CTCTCTTTGCCGTCCGCT 59.737 61.111 0.00 0.00 38.78 5.52
4055 4085 3.491652 GCTCTCTTTGCCGTCCGC 61.492 66.667 0.00 0.00 38.31 5.54
4056 4086 3.181967 CGCTCTCTTTGCCGTCCG 61.182 66.667 0.00 0.00 0.00 4.79
4057 4087 2.815647 CCGCTCTCTTTGCCGTCC 60.816 66.667 0.00 0.00 0.00 4.79
4058 4088 2.095252 GTCCGCTCTCTTTGCCGTC 61.095 63.158 0.00 0.00 0.00 4.79
4059 4089 2.048127 GTCCGCTCTCTTTGCCGT 60.048 61.111 0.00 0.00 0.00 5.68
4060 4090 3.181967 CGTCCGCTCTCTTTGCCG 61.182 66.667 0.00 0.00 0.00 5.69
4061 4091 2.815647 CCGTCCGCTCTCTTTGCC 60.816 66.667 0.00 0.00 0.00 4.52
4062 4092 3.491652 GCCGTCCGCTCTCTTTGC 61.492 66.667 0.00 0.00 0.00 3.68
4063 4093 1.021390 ATTGCCGTCCGCTCTCTTTG 61.021 55.000 0.00 0.00 38.78 2.77
4064 4094 0.535335 TATTGCCGTCCGCTCTCTTT 59.465 50.000 0.00 0.00 38.78 2.52
4065 4095 0.535335 TTATTGCCGTCCGCTCTCTT 59.465 50.000 0.00 0.00 38.78 2.85
4066 4096 0.753262 ATTATTGCCGTCCGCTCTCT 59.247 50.000 0.00 0.00 38.78 3.10
4067 4097 1.261619 CAATTATTGCCGTCCGCTCTC 59.738 52.381 0.00 0.00 38.78 3.20
4068 4098 1.299541 CAATTATTGCCGTCCGCTCT 58.700 50.000 0.00 0.00 38.78 4.09
4069 4099 3.825812 CAATTATTGCCGTCCGCTC 57.174 52.632 0.00 0.00 38.78 5.03
4079 4109 2.537529 CGGACTGACAGCGCAATTATTG 60.538 50.000 11.47 0.00 0.00 1.90
4080 4110 1.665679 CGGACTGACAGCGCAATTATT 59.334 47.619 11.47 0.00 0.00 1.40
4081 4111 1.290203 CGGACTGACAGCGCAATTAT 58.710 50.000 11.47 0.00 0.00 1.28
4082 4112 0.037697 ACGGACTGACAGCGCAATTA 60.038 50.000 11.47 0.00 0.00 1.40
4083 4113 0.884704 AACGGACTGACAGCGCAATT 60.885 50.000 11.47 0.00 0.00 2.32
4084 4114 0.037697 TAACGGACTGACAGCGCAAT 60.038 50.000 11.47 0.00 0.00 3.56
4085 4115 0.249531 TTAACGGACTGACAGCGCAA 60.250 50.000 11.47 0.00 0.00 4.85
4086 4116 0.666274 CTTAACGGACTGACAGCGCA 60.666 55.000 11.47 0.00 0.00 6.09
4087 4117 0.666577 ACTTAACGGACTGACAGCGC 60.667 55.000 0.00 0.00 0.00 5.92
4088 4118 1.060713 CACTTAACGGACTGACAGCG 58.939 55.000 1.25 1.39 0.00 5.18
4089 4119 1.429463 CCACTTAACGGACTGACAGC 58.571 55.000 1.25 0.00 0.00 4.40
4090 4120 1.000955 AGCCACTTAACGGACTGACAG 59.999 52.381 0.00 0.00 0.00 3.51
4091 4121 1.045407 AGCCACTTAACGGACTGACA 58.955 50.000 0.00 0.00 0.00 3.58
4092 4122 2.991866 GTTAGCCACTTAACGGACTGAC 59.008 50.000 0.00 0.00 0.00 3.51
4093 4123 3.308438 GTTAGCCACTTAACGGACTGA 57.692 47.619 0.00 0.00 0.00 3.41
4100 4130 1.084289 CCTGCCGTTAGCCACTTAAC 58.916 55.000 0.00 0.00 42.71 2.01
4101 4131 0.675522 GCCTGCCGTTAGCCACTTAA 60.676 55.000 0.00 0.00 42.71 1.85
4102 4132 1.078708 GCCTGCCGTTAGCCACTTA 60.079 57.895 0.00 0.00 42.71 2.24
4103 4133 2.359975 GCCTGCCGTTAGCCACTT 60.360 61.111 0.00 0.00 42.71 3.16
4104 4134 4.410400 GGCCTGCCGTTAGCCACT 62.410 66.667 0.00 0.00 46.34 4.00
4108 4138 2.877691 CAAAGGCCTGCCGTTAGC 59.122 61.111 5.69 0.00 41.95 3.09
4109 4139 2.877691 GCAAAGGCCTGCCGTTAG 59.122 61.111 5.69 5.68 41.95 2.34
4135 4165 3.058224 ACACTAGAAATTTTGCCGTCAGC 60.058 43.478 0.00 0.00 44.14 4.26
4136 4166 4.452455 AGACACTAGAAATTTTGCCGTCAG 59.548 41.667 0.00 0.00 0.00 3.51
4137 4167 4.385825 AGACACTAGAAATTTTGCCGTCA 58.614 39.130 0.00 0.00 0.00 4.35
4138 4168 5.358298 AAGACACTAGAAATTTTGCCGTC 57.642 39.130 0.00 0.00 0.00 4.79
4139 4169 5.519722 CAAAGACACTAGAAATTTTGCCGT 58.480 37.500 0.00 0.00 0.00 5.68
4140 4170 4.382754 GCAAAGACACTAGAAATTTTGCCG 59.617 41.667 19.23 0.00 42.56 5.69
4141 4171 5.829233 GCAAAGACACTAGAAATTTTGCC 57.171 39.130 19.23 8.98 42.56 4.52
4142 4172 4.382754 CGGCAAAGACACTAGAAATTTTGC 59.617 41.667 20.57 20.57 45.69 3.68
4143 4173 5.519722 ACGGCAAAGACACTAGAAATTTTG 58.480 37.500 0.00 3.73 0.00 2.44
4144 4174 5.531287 AGACGGCAAAGACACTAGAAATTTT 59.469 36.000 0.00 0.00 0.00 1.82
4145 4175 5.049405 CAGACGGCAAAGACACTAGAAATTT 60.049 40.000 0.00 0.00 0.00 1.82
4146 4176 4.452455 CAGACGGCAAAGACACTAGAAATT 59.548 41.667 0.00 0.00 0.00 1.82
4147 4177 3.997021 CAGACGGCAAAGACACTAGAAAT 59.003 43.478 0.00 0.00 0.00 2.17
4148 4178 3.390135 CAGACGGCAAAGACACTAGAAA 58.610 45.455 0.00 0.00 0.00 2.52
4149 4179 2.866460 GCAGACGGCAAAGACACTAGAA 60.866 50.000 0.00 0.00 43.97 2.10
4150 4180 1.336887 GCAGACGGCAAAGACACTAGA 60.337 52.381 0.00 0.00 43.97 2.43
4151 4181 1.071605 GCAGACGGCAAAGACACTAG 58.928 55.000 0.00 0.00 43.97 2.57
4152 4182 3.210857 GCAGACGGCAAAGACACTA 57.789 52.632 0.00 0.00 43.97 2.74
4153 4183 4.049393 GCAGACGGCAAAGACACT 57.951 55.556 0.00 0.00 43.97 3.55
4163 4193 2.887568 GACATCAGCGGCAGACGG 60.888 66.667 1.45 0.00 44.51 4.79
4165 4195 0.179089 AGATGACATCAGCGGCAGAC 60.179 55.000 17.57 0.00 37.34 3.51
4166 4196 1.067669 GTAGATGACATCAGCGGCAGA 59.932 52.381 17.57 0.00 37.34 4.26
4167 4197 1.202452 TGTAGATGACATCAGCGGCAG 60.202 52.381 17.57 0.00 37.34 4.85
4168 4198 0.823460 TGTAGATGACATCAGCGGCA 59.177 50.000 17.57 5.91 37.34 5.69
4169 4199 1.212616 GTGTAGATGACATCAGCGGC 58.787 55.000 17.57 0.00 41.14 6.53
4170 4200 1.202302 ACGTGTAGATGACATCAGCGG 60.202 52.381 17.57 7.97 41.14 5.52
4171 4201 2.112522 GACGTGTAGATGACATCAGCG 58.887 52.381 17.57 15.85 41.14 5.18
4172 4202 2.854777 GTGACGTGTAGATGACATCAGC 59.145 50.000 17.57 9.73 41.14 4.26
4173 4203 4.362932 AGTGACGTGTAGATGACATCAG 57.637 45.455 17.57 5.92 41.14 2.90
4174 4204 4.698304 TGTAGTGACGTGTAGATGACATCA 59.302 41.667 17.57 1.22 41.14 3.07
4175 4205 5.231265 TGTAGTGACGTGTAGATGACATC 57.769 43.478 7.39 7.39 41.14 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.