Multiple sequence alignment - TraesCS4A01G160900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G160900 chr4A 100.000 2669 0 0 535 3203 347400143 347402811 0.000000e+00 4929.0
1 TraesCS4A01G160900 chr4A 100.000 331 0 0 1 331 347399609 347399939 2.110000e-171 612.0
2 TraesCS4A01G160900 chr4A 92.920 113 2 6 3028 3136 666265554 666265444 3.310000e-35 159.0
3 TraesCS4A01G160900 chr4A 97.222 72 2 0 3132 3203 584464045 584464116 4.340000e-24 122.0
4 TraesCS4A01G160900 chr4D 96.656 2153 60 9 895 3040 209209010 209211157 0.000000e+00 3567.0
5 TraesCS4A01G160900 chr4B 96.430 2157 63 7 895 3040 312078574 312080727 0.000000e+00 3544.0
6 TraesCS4A01G160900 chr4B 79.937 319 48 10 600 902 581896008 581896326 1.500000e-53 220.0
7 TraesCS4A01G160900 chr3B 88.579 359 35 5 546 902 5598881 5599235 6.350000e-117 431.0
8 TraesCS4A01G160900 chr3B 95.960 99 2 2 3041 3137 2494312 2494410 3.310000e-35 159.0
9 TraesCS4A01G160900 chr2D 86.684 383 33 14 535 902 642837659 642838038 2.970000e-110 409.0
10 TraesCS4A01G160900 chr2D 87.360 356 30 7 535 876 585382059 585382413 8.330000e-106 394.0
11 TraesCS4A01G160900 chr2D 92.593 189 11 1 127 315 585381763 585381948 5.270000e-68 268.0
12 TraesCS4A01G160900 chr2D 92.063 189 14 1 127 315 642836925 642837112 6.810000e-67 265.0
13 TraesCS4A01G160900 chr2D 93.478 138 9 0 1 138 585381547 585381684 4.190000e-49 206.0
14 TraesCS4A01G160900 chr2D 93.478 138 9 0 1 138 642836709 642836846 4.190000e-49 206.0
15 TraesCS4A01G160900 chr2D 93.694 111 6 1 133 243 398783275 398783166 7.110000e-37 165.0
16 TraesCS4A01G160900 chr2D 96.000 75 3 0 64 138 398783434 398783360 4.340000e-24 122.0
17 TraesCS4A01G160900 chr2D 89.247 93 8 2 239 331 68563828 68563918 7.260000e-22 115.0
18 TraesCS4A01G160900 chr7B 85.974 385 34 12 535 902 605427781 605427400 8.330000e-106 394.0
19 TraesCS4A01G160900 chr7B 76.489 319 54 16 600 901 748177844 748178158 1.540000e-33 154.0
20 TraesCS4A01G160900 chr7B 75.862 319 56 16 600 901 748169012 748169326 3.330000e-30 143.0
21 TraesCS4A01G160900 chr1B 86.059 373 44 5 535 902 649699732 649700101 8.330000e-106 394.0
22 TraesCS4A01G160900 chr1B 89.418 189 14 6 133 315 642618755 642618567 1.920000e-57 233.0
23 TraesCS4A01G160900 chr1B 95.960 99 1 2 3041 3136 361507402 361507304 1.190000e-34 158.0
24 TraesCS4A01G160900 chr2B 94.595 111 5 1 133 243 472901705 472901596 1.530000e-38 171.0
25 TraesCS4A01G160900 chr2B 95.960 99 2 1 3040 3136 30471550 30471452 3.310000e-35 159.0
26 TraesCS4A01G160900 chr2B 98.611 72 0 1 3132 3202 30471482 30471411 3.350000e-25 126.0
27 TraesCS4A01G160900 chr2B 96.000 75 3 0 64 138 472901864 472901790 4.340000e-24 122.0
28 TraesCS4A01G160900 chr2B 97.222 72 2 0 3132 3203 613221386 613221315 4.340000e-24 122.0
29 TraesCS4A01G160900 chr2A 97.938 97 1 1 3041 3136 583255707 583255803 1.980000e-37 167.0
30 TraesCS4A01G160900 chr2A 93.694 111 6 1 133 243 536626910 536626801 7.110000e-37 165.0
31 TraesCS4A01G160900 chr2A 96.000 75 3 0 64 138 536627069 536626995 4.340000e-24 122.0
32 TraesCS4A01G160900 chr2A 89.583 48 3 2 857 902 4383366 4383413 3.450000e-05 60.2
33 TraesCS4A01G160900 chr3A 97.895 95 2 0 3042 3136 601606568 601606662 7.110000e-37 165.0
34 TraesCS4A01G160900 chr3A 95.000 100 4 1 3037 3136 40944379 40944281 4.280000e-34 156.0
35 TraesCS4A01G160900 chr3A 98.592 71 1 0 3133 3203 601606633 601606703 3.350000e-25 126.0
36 TraesCS4A01G160900 chr6A 96.000 100 2 2 3038 3136 535375894 535375992 9.200000e-36 161.0
37 TraesCS4A01G160900 chr6A 97.222 72 2 0 3132 3203 2932319 2932248 4.340000e-24 122.0
38 TraesCS4A01G160900 chr6A 97.222 72 2 0 3132 3203 535375962 535376033 4.340000e-24 122.0
39 TraesCS4A01G160900 chrUn 95.960 99 2 1 3040 3136 36198372 36198274 3.310000e-35 159.0
40 TraesCS4A01G160900 chrUn 97.222 72 2 0 3132 3203 36198304 36198233 4.340000e-24 122.0
41 TraesCS4A01G160900 chr5B 77.907 258 38 14 600 840 586529954 586530209 3.330000e-30 143.0
42 TraesCS4A01G160900 chr5A 97.222 72 2 0 3132 3203 548656539 548656468 4.340000e-24 122.0
43 TraesCS4A01G160900 chr1A 97.222 72 2 0 3132 3203 552448973 552449044 4.340000e-24 122.0
44 TraesCS4A01G160900 chr7A 93.056 72 5 0 244 315 623459958 623460029 4.370000e-19 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G160900 chr4A 347399609 347402811 3202 False 2770.500000 4929 100.000000 1 3203 2 chr4A.!!$F2 3202
1 TraesCS4A01G160900 chr4D 209209010 209211157 2147 False 3567.000000 3567 96.656000 895 3040 1 chr4D.!!$F1 2145
2 TraesCS4A01G160900 chr4B 312078574 312080727 2153 False 3544.000000 3544 96.430000 895 3040 1 chr4B.!!$F1 2145
3 TraesCS4A01G160900 chr2D 642836709 642838038 1329 False 293.333333 409 90.741667 1 902 3 chr2D.!!$F3 901
4 TraesCS4A01G160900 chr2D 585381547 585382413 866 False 289.333333 394 91.143667 1 876 3 chr2D.!!$F2 875

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
786 877 0.030369 GTTGAGATCGTCGGGCGTAT 59.97 55.0 0.49 0.0 42.13 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2437 2956 0.236711 CTGCCAAAGACAAGAGCACG 59.763 55.0 0.0 0.0 0.0 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 4.081030 CACCTCGCAGCAGCAACG 62.081 66.667 0.82 0.00 42.27 4.10
131 222 4.208686 GCTAGGACTCCACGGCGG 62.209 72.222 13.24 0.00 0.00 6.13
145 236 1.375326 GGCGGTCCTCCTTGAGTTT 59.625 57.895 0.00 0.00 0.00 2.66
237 328 2.185350 CACGGGCGAGCTCAAGAT 59.815 61.111 15.40 0.00 0.00 2.40
286 377 1.499007 GACAGAGAGGAGGAGGAGGAT 59.501 57.143 0.00 0.00 0.00 3.24
585 676 4.373116 GCCGCCGAGTCCTTCACA 62.373 66.667 0.00 0.00 0.00 3.58
586 677 2.432628 CCGCCGAGTCCTTCACAC 60.433 66.667 0.00 0.00 0.00 3.82
587 678 2.651361 CGCCGAGTCCTTCACACT 59.349 61.111 0.00 0.00 0.00 3.55
588 679 1.734477 CGCCGAGTCCTTCACACTG 60.734 63.158 0.00 0.00 0.00 3.66
589 680 1.374758 GCCGAGTCCTTCACACTGG 60.375 63.158 0.00 0.00 0.00 4.00
590 681 1.374758 CCGAGTCCTTCACACTGGC 60.375 63.158 0.00 0.00 0.00 4.85
591 682 1.374758 CGAGTCCTTCACACTGGCC 60.375 63.158 0.00 0.00 0.00 5.36
592 683 1.754745 GAGTCCTTCACACTGGCCA 59.245 57.895 4.71 4.71 0.00 5.36
593 684 0.326264 GAGTCCTTCACACTGGCCAT 59.674 55.000 5.51 0.00 0.00 4.40
594 685 0.037303 AGTCCTTCACACTGGCCATG 59.963 55.000 5.51 9.86 0.00 3.66
595 686 0.036732 GTCCTTCACACTGGCCATGA 59.963 55.000 5.51 4.19 0.00 3.07
596 687 0.036732 TCCTTCACACTGGCCATGAC 59.963 55.000 5.51 0.00 0.00 3.06
597 688 1.300971 CCTTCACACTGGCCATGACG 61.301 60.000 5.51 4.98 0.00 4.35
598 689 1.300971 CTTCACACTGGCCATGACGG 61.301 60.000 5.51 0.00 38.11 4.79
599 690 2.746412 TTCACACTGGCCATGACGGG 62.746 60.000 5.51 0.00 34.06 5.28
600 691 4.033776 ACACTGGCCATGACGGGG 62.034 66.667 5.51 0.00 34.06 5.73
615 706 4.047059 GGGCGACACGAACGAGGA 62.047 66.667 0.14 0.00 0.00 3.71
616 707 2.804090 GGCGACACGAACGAGGAC 60.804 66.667 0.14 0.00 0.00 3.85
617 708 3.164011 GCGACACGAACGAGGACG 61.164 66.667 0.14 6.25 45.75 4.79
618 709 2.501222 CGACACGAACGAGGACGG 60.501 66.667 0.14 0.00 44.46 4.79
619 710 2.804090 GACACGAACGAGGACGGC 60.804 66.667 0.14 0.00 44.46 5.68
620 711 4.695231 ACACGAACGAGGACGGCG 62.695 66.667 4.80 4.80 44.46 6.46
624 715 4.368543 GAACGAGGACGGCGGGTT 62.369 66.667 13.24 7.05 44.46 4.11
625 716 4.368543 AACGAGGACGGCGGGTTC 62.369 66.667 13.24 4.20 44.46 3.62
645 736 4.099170 GCGTTGCTGGAGCTGCAG 62.099 66.667 29.15 29.15 39.29 4.41
646 737 3.429141 CGTTGCTGGAGCTGCAGG 61.429 66.667 32.87 15.15 39.29 4.85
647 738 2.033141 GTTGCTGGAGCTGCAGGA 59.967 61.111 32.87 29.32 39.29 3.86
648 739 2.039405 GTTGCTGGAGCTGCAGGAG 61.039 63.158 32.87 12.69 39.29 3.69
649 740 2.219164 TTGCTGGAGCTGCAGGAGA 61.219 57.895 32.87 19.37 39.29 3.71
650 741 2.181445 TTGCTGGAGCTGCAGGAGAG 62.181 60.000 32.87 11.94 39.29 3.20
651 742 2.357575 GCTGGAGCTGCAGGAGAGA 61.358 63.158 32.87 0.00 38.21 3.10
652 743 1.817881 CTGGAGCTGCAGGAGAGAG 59.182 63.158 26.30 0.27 0.00 3.20
653 744 1.678598 CTGGAGCTGCAGGAGAGAGG 61.679 65.000 26.30 0.00 0.00 3.69
654 745 2.500646 GAGCTGCAGGAGAGAGGC 59.499 66.667 17.12 0.00 0.00 4.70
655 746 3.082701 AGCTGCAGGAGAGAGGCC 61.083 66.667 17.12 0.00 0.00 5.19
656 747 3.397439 GCTGCAGGAGAGAGGCCA 61.397 66.667 17.12 0.00 0.00 5.36
657 748 2.744243 GCTGCAGGAGAGAGGCCAT 61.744 63.158 17.12 0.00 0.00 4.40
658 749 1.146485 CTGCAGGAGAGAGGCCATG 59.854 63.158 5.01 0.00 0.00 3.66
659 750 2.203181 GCAGGAGAGAGGCCATGC 60.203 66.667 5.01 0.00 0.00 4.06
660 751 3.040206 GCAGGAGAGAGGCCATGCA 62.040 63.158 5.01 0.00 33.02 3.96
661 752 1.153208 CAGGAGAGAGGCCATGCAC 60.153 63.158 5.01 0.00 0.00 4.57
662 753 2.202987 GGAGAGAGGCCATGCACG 60.203 66.667 5.01 0.00 0.00 5.34
663 754 2.581354 GAGAGAGGCCATGCACGT 59.419 61.111 5.01 0.00 0.00 4.49
664 755 1.812922 GAGAGAGGCCATGCACGTG 60.813 63.158 12.28 12.28 0.00 4.49
665 756 2.821366 GAGAGGCCATGCACGTGG 60.821 66.667 18.88 4.43 42.35 4.94
666 757 3.612247 GAGAGGCCATGCACGTGGT 62.612 63.158 18.88 0.00 41.47 4.16
667 758 3.434319 GAGGCCATGCACGTGGTG 61.434 66.667 18.88 0.00 41.47 4.17
668 759 3.899981 GAGGCCATGCACGTGGTGA 62.900 63.158 18.88 0.00 41.47 4.02
669 760 3.434319 GGCCATGCACGTGGTGAG 61.434 66.667 18.88 0.00 41.47 3.51
670 761 4.107051 GCCATGCACGTGGTGAGC 62.107 66.667 18.88 2.25 41.47 4.26
671 762 3.434319 CCATGCACGTGGTGAGCC 61.434 66.667 18.88 0.00 35.23 4.70
672 763 2.359107 CATGCACGTGGTGAGCCT 60.359 61.111 18.88 0.00 35.23 4.58
673 764 2.359107 ATGCACGTGGTGAGCCTG 60.359 61.111 18.88 0.00 35.23 4.85
674 765 3.182590 ATGCACGTGGTGAGCCTGT 62.183 57.895 18.88 0.00 35.23 4.00
675 766 3.349006 GCACGTGGTGAGCCTGTG 61.349 66.667 18.88 0.00 41.51 3.66
676 767 2.421314 CACGTGGTGAGCCTGTGA 59.579 61.111 7.95 0.00 41.28 3.58
677 768 1.665916 CACGTGGTGAGCCTGTGAG 60.666 63.158 7.95 0.00 41.28 3.51
678 769 2.047844 CGTGGTGAGCCTGTGAGG 60.048 66.667 0.00 0.00 38.80 3.86
679 770 2.574018 CGTGGTGAGCCTGTGAGGA 61.574 63.158 0.00 0.00 37.67 3.71
680 771 1.754745 GTGGTGAGCCTGTGAGGAA 59.245 57.895 0.00 0.00 37.67 3.36
681 772 0.108585 GTGGTGAGCCTGTGAGGAAA 59.891 55.000 0.00 0.00 37.67 3.13
682 773 0.843309 TGGTGAGCCTGTGAGGAAAA 59.157 50.000 0.00 0.00 37.67 2.29
683 774 1.425066 TGGTGAGCCTGTGAGGAAAAT 59.575 47.619 0.00 0.00 37.67 1.82
684 775 2.642311 TGGTGAGCCTGTGAGGAAAATA 59.358 45.455 0.00 0.00 37.67 1.40
685 776 3.073798 TGGTGAGCCTGTGAGGAAAATAA 59.926 43.478 0.00 0.00 37.67 1.40
686 777 3.691609 GGTGAGCCTGTGAGGAAAATAAG 59.308 47.826 0.00 0.00 37.67 1.73
687 778 3.691609 GTGAGCCTGTGAGGAAAATAAGG 59.308 47.826 0.00 0.00 37.67 2.69
688 779 3.587061 TGAGCCTGTGAGGAAAATAAGGA 59.413 43.478 0.00 0.00 37.67 3.36
689 780 4.195416 GAGCCTGTGAGGAAAATAAGGAG 58.805 47.826 0.00 0.00 37.67 3.69
690 781 3.846588 AGCCTGTGAGGAAAATAAGGAGA 59.153 43.478 0.00 0.00 37.67 3.71
691 782 4.080638 AGCCTGTGAGGAAAATAAGGAGAG 60.081 45.833 0.00 0.00 37.67 3.20
692 783 4.080863 GCCTGTGAGGAAAATAAGGAGAGA 60.081 45.833 0.00 0.00 37.67 3.10
693 784 5.669477 CCTGTGAGGAAAATAAGGAGAGAG 58.331 45.833 0.00 0.00 37.67 3.20
694 785 5.396213 CCTGTGAGGAAAATAAGGAGAGAGG 60.396 48.000 0.00 0.00 37.67 3.69
695 786 5.094387 TGTGAGGAAAATAAGGAGAGAGGT 58.906 41.667 0.00 0.00 0.00 3.85
696 787 5.548056 TGTGAGGAAAATAAGGAGAGAGGTT 59.452 40.000 0.00 0.00 0.00 3.50
697 788 5.877564 GTGAGGAAAATAAGGAGAGAGGTTG 59.122 44.000 0.00 0.00 0.00 3.77
698 789 5.785423 TGAGGAAAATAAGGAGAGAGGTTGA 59.215 40.000 0.00 0.00 0.00 3.18
699 790 6.056090 AGGAAAATAAGGAGAGAGGTTGAC 57.944 41.667 0.00 0.00 0.00 3.18
700 791 4.870991 GGAAAATAAGGAGAGAGGTTGACG 59.129 45.833 0.00 0.00 0.00 4.35
701 792 5.480205 GAAAATAAGGAGAGAGGTTGACGT 58.520 41.667 0.00 0.00 0.00 4.34
702 793 4.457834 AATAAGGAGAGAGGTTGACGTG 57.542 45.455 0.00 0.00 0.00 4.49
703 794 1.705873 AAGGAGAGAGGTTGACGTGT 58.294 50.000 0.00 0.00 0.00 4.49
704 795 0.962489 AGGAGAGAGGTTGACGTGTG 59.038 55.000 0.00 0.00 0.00 3.82
705 796 0.038159 GGAGAGAGGTTGACGTGTGG 60.038 60.000 0.00 0.00 0.00 4.17
706 797 0.038159 GAGAGAGGTTGACGTGTGGG 60.038 60.000 0.00 0.00 0.00 4.61
707 798 1.004918 GAGAGGTTGACGTGTGGGG 60.005 63.158 0.00 0.00 0.00 4.96
708 799 2.668550 GAGGTTGACGTGTGGGGC 60.669 66.667 0.00 0.00 0.00 5.80
709 800 3.168528 AGGTTGACGTGTGGGGCT 61.169 61.111 0.00 0.00 0.00 5.19
710 801 2.203294 GGTTGACGTGTGGGGCTT 60.203 61.111 0.00 0.00 0.00 4.35
711 802 1.826487 GGTTGACGTGTGGGGCTTT 60.826 57.895 0.00 0.00 0.00 3.51
712 803 1.388837 GGTTGACGTGTGGGGCTTTT 61.389 55.000 0.00 0.00 0.00 2.27
713 804 0.248866 GTTGACGTGTGGGGCTTTTG 60.249 55.000 0.00 0.00 0.00 2.44
714 805 2.010582 TTGACGTGTGGGGCTTTTGC 62.011 55.000 0.00 0.00 46.64 3.68
748 839 4.792804 GGCACTCCCAGCTGCTCC 62.793 72.222 8.66 0.00 33.63 4.70
749 840 4.025858 GCACTCCCAGCTGCTCCA 62.026 66.667 8.66 0.00 0.00 3.86
750 841 2.046507 CACTCCCAGCTGCTCCAC 60.047 66.667 8.66 0.00 0.00 4.02
751 842 2.527624 ACTCCCAGCTGCTCCACA 60.528 61.111 8.66 0.00 0.00 4.17
761 852 3.993535 GCTCCACAGCTTTCTGGG 58.006 61.111 2.64 0.00 44.54 4.45
762 853 1.073897 GCTCCACAGCTTTCTGGGT 59.926 57.895 2.64 0.00 42.19 4.51
763 854 0.538287 GCTCCACAGCTTTCTGGGTT 60.538 55.000 2.64 0.00 42.19 4.11
764 855 1.986882 CTCCACAGCTTTCTGGGTTT 58.013 50.000 2.64 0.00 42.19 3.27
765 856 2.814097 GCTCCACAGCTTTCTGGGTTTA 60.814 50.000 2.64 0.00 42.19 2.01
766 857 3.077359 CTCCACAGCTTTCTGGGTTTAG 58.923 50.000 2.64 0.00 42.19 1.85
767 858 2.162681 CCACAGCTTTCTGGGTTTAGG 58.837 52.381 0.00 0.00 42.19 2.69
768 859 2.489073 CCACAGCTTTCTGGGTTTAGGT 60.489 50.000 0.00 0.00 42.19 3.08
769 860 3.222603 CACAGCTTTCTGGGTTTAGGTT 58.777 45.455 0.00 0.00 44.54 3.50
770 861 3.004734 CACAGCTTTCTGGGTTTAGGTTG 59.995 47.826 0.00 0.00 44.54 3.77
771 862 3.117663 ACAGCTTTCTGGGTTTAGGTTGA 60.118 43.478 0.00 0.00 44.54 3.18
772 863 3.503748 CAGCTTTCTGGGTTTAGGTTGAG 59.496 47.826 0.00 0.00 36.68 3.02
773 864 3.394606 AGCTTTCTGGGTTTAGGTTGAGA 59.605 43.478 0.00 0.00 0.00 3.27
774 865 4.043435 AGCTTTCTGGGTTTAGGTTGAGAT 59.957 41.667 0.00 0.00 0.00 2.75
775 866 4.396478 GCTTTCTGGGTTTAGGTTGAGATC 59.604 45.833 0.00 0.00 0.00 2.75
776 867 3.887621 TCTGGGTTTAGGTTGAGATCG 57.112 47.619 0.00 0.00 0.00 3.69
777 868 3.170717 TCTGGGTTTAGGTTGAGATCGT 58.829 45.455 0.00 0.00 0.00 3.73
778 869 3.194968 TCTGGGTTTAGGTTGAGATCGTC 59.805 47.826 0.00 0.00 0.00 4.20
779 870 2.094390 TGGGTTTAGGTTGAGATCGTCG 60.094 50.000 0.00 0.00 0.00 5.12
780 871 2.537401 GGTTTAGGTTGAGATCGTCGG 58.463 52.381 0.00 0.00 0.00 4.79
781 872 2.537401 GTTTAGGTTGAGATCGTCGGG 58.463 52.381 0.00 0.00 0.00 5.14
782 873 0.458669 TTAGGTTGAGATCGTCGGGC 59.541 55.000 0.00 0.00 0.00 6.13
783 874 1.721664 TAGGTTGAGATCGTCGGGCG 61.722 60.000 0.00 0.00 43.01 6.13
784 875 2.181021 GTTGAGATCGTCGGGCGT 59.819 61.111 0.49 0.00 42.13 5.68
785 876 1.430632 GTTGAGATCGTCGGGCGTA 59.569 57.895 0.49 0.00 42.13 4.42
786 877 0.030369 GTTGAGATCGTCGGGCGTAT 59.970 55.000 0.49 0.00 42.13 3.06
787 878 1.265095 GTTGAGATCGTCGGGCGTATA 59.735 52.381 0.49 0.00 42.13 1.47
788 879 1.817357 TGAGATCGTCGGGCGTATAT 58.183 50.000 0.49 0.00 42.13 0.86
789 880 2.156917 TGAGATCGTCGGGCGTATATT 58.843 47.619 0.49 0.00 42.13 1.28
790 881 2.555325 TGAGATCGTCGGGCGTATATTT 59.445 45.455 0.49 0.00 42.13 1.40
791 882 2.915463 GAGATCGTCGGGCGTATATTTG 59.085 50.000 0.49 0.00 42.13 2.32
792 883 1.990563 GATCGTCGGGCGTATATTTGG 59.009 52.381 0.49 0.00 42.13 3.28
793 884 0.598158 TCGTCGGGCGTATATTTGGC 60.598 55.000 0.49 0.00 42.13 4.52
794 885 0.599204 CGTCGGGCGTATATTTGGCT 60.599 55.000 0.00 0.00 35.54 4.75
795 886 1.336148 CGTCGGGCGTATATTTGGCTA 60.336 52.381 0.00 0.00 35.54 3.93
796 887 2.758009 GTCGGGCGTATATTTGGCTAA 58.242 47.619 1.42 0.00 0.00 3.09
797 888 3.132925 GTCGGGCGTATATTTGGCTAAA 58.867 45.455 0.00 0.00 0.00 1.85
798 889 3.749609 GTCGGGCGTATATTTGGCTAAAT 59.250 43.478 12.96 12.96 39.69 1.40
799 890 3.998341 TCGGGCGTATATTTGGCTAAATC 59.002 43.478 11.71 0.00 37.64 2.17
800 891 4.000988 CGGGCGTATATTTGGCTAAATCT 58.999 43.478 11.71 5.00 37.64 2.40
801 892 4.142902 CGGGCGTATATTTGGCTAAATCTG 60.143 45.833 11.71 2.15 37.64 2.90
802 893 5.001232 GGGCGTATATTTGGCTAAATCTGA 58.999 41.667 11.71 0.00 37.64 3.27
803 894 5.106673 GGGCGTATATTTGGCTAAATCTGAC 60.107 44.000 11.71 7.62 37.64 3.51
804 895 5.389516 GGCGTATATTTGGCTAAATCTGACG 60.390 44.000 21.76 21.76 38.01 4.35
805 896 5.609088 CGTATATTTGGCTAAATCTGACGC 58.391 41.667 11.71 0.00 37.64 5.19
806 897 5.405571 CGTATATTTGGCTAAATCTGACGCT 59.594 40.000 11.71 0.00 37.64 5.07
807 898 6.584942 CGTATATTTGGCTAAATCTGACGCTA 59.415 38.462 11.71 0.00 37.64 4.26
808 899 7.275779 CGTATATTTGGCTAAATCTGACGCTAT 59.724 37.037 11.71 0.31 37.64 2.97
809 900 7.986085 ATATTTGGCTAAATCTGACGCTATT 57.014 32.000 11.71 0.00 37.64 1.73
810 901 6.699575 ATTTGGCTAAATCTGACGCTATTT 57.300 33.333 1.61 0.00 30.85 1.40
811 902 5.734855 TTGGCTAAATCTGACGCTATTTC 57.265 39.130 0.00 0.00 0.00 2.17
812 903 4.765273 TGGCTAAATCTGACGCTATTTCA 58.235 39.130 0.00 0.00 0.00 2.69
813 904 4.811024 TGGCTAAATCTGACGCTATTTCAG 59.189 41.667 0.00 0.00 41.72 3.02
814 905 4.212214 GGCTAAATCTGACGCTATTTCAGG 59.788 45.833 0.70 0.00 40.87 3.86
815 906 5.050490 GCTAAATCTGACGCTATTTCAGGA 58.950 41.667 0.70 0.00 40.87 3.86
816 907 5.698545 GCTAAATCTGACGCTATTTCAGGAT 59.301 40.000 0.70 0.00 40.87 3.24
817 908 6.128688 GCTAAATCTGACGCTATTTCAGGATC 60.129 42.308 0.70 0.00 40.87 3.36
818 909 5.543507 AATCTGACGCTATTTCAGGATCT 57.456 39.130 0.70 0.00 40.87 2.75
819 910 6.656632 AATCTGACGCTATTTCAGGATCTA 57.343 37.500 0.70 0.00 40.87 1.98
820 911 5.697473 TCTGACGCTATTTCAGGATCTAG 57.303 43.478 0.70 0.00 40.87 2.43
821 912 4.520874 TCTGACGCTATTTCAGGATCTAGG 59.479 45.833 0.70 0.00 40.87 3.02
822 913 4.470602 TGACGCTATTTCAGGATCTAGGA 58.529 43.478 0.00 0.00 0.00 2.94
823 914 4.520874 TGACGCTATTTCAGGATCTAGGAG 59.479 45.833 0.00 0.00 0.00 3.69
824 915 3.257127 ACGCTATTTCAGGATCTAGGAGC 59.743 47.826 0.00 0.00 0.00 4.70
825 916 3.509575 CGCTATTTCAGGATCTAGGAGCT 59.490 47.826 0.00 0.00 0.00 4.09
826 917 4.617995 CGCTATTTCAGGATCTAGGAGCTG 60.618 50.000 0.00 0.00 0.00 4.24
827 918 4.526262 GCTATTTCAGGATCTAGGAGCTGA 59.474 45.833 0.00 0.00 0.00 4.26
828 919 4.953940 ATTTCAGGATCTAGGAGCTGAC 57.046 45.455 0.00 0.00 0.00 3.51
829 920 3.678965 TTCAGGATCTAGGAGCTGACT 57.321 47.619 0.00 0.00 0.00 3.41
830 921 2.942804 TCAGGATCTAGGAGCTGACTG 58.057 52.381 0.00 0.00 0.00 3.51
831 922 1.962807 CAGGATCTAGGAGCTGACTGG 59.037 57.143 0.00 0.00 0.00 4.00
832 923 1.133199 AGGATCTAGGAGCTGACTGGG 60.133 57.143 0.00 0.00 0.00 4.45
833 924 0.678950 GATCTAGGAGCTGACTGGGC 59.321 60.000 0.00 0.00 0.00 5.36
834 925 1.112315 ATCTAGGAGCTGACTGGGCG 61.112 60.000 0.00 0.00 34.52 6.13
835 926 1.754621 CTAGGAGCTGACTGGGCGA 60.755 63.158 0.00 0.00 34.52 5.54
836 927 1.304962 TAGGAGCTGACTGGGCGAA 60.305 57.895 0.00 0.00 34.52 4.70
837 928 0.902984 TAGGAGCTGACTGGGCGAAA 60.903 55.000 0.00 0.00 34.52 3.46
838 929 1.302511 GGAGCTGACTGGGCGAAAA 60.303 57.895 0.00 0.00 34.52 2.29
839 930 0.889186 GGAGCTGACTGGGCGAAAAA 60.889 55.000 0.00 0.00 34.52 1.94
858 949 5.769484 AAAAATGCATGCCAACAATGAAA 57.231 30.435 16.68 0.00 0.00 2.69
859 950 5.769484 AAAATGCATGCCAACAATGAAAA 57.231 30.435 16.68 0.00 0.00 2.29
860 951 5.769484 AAATGCATGCCAACAATGAAAAA 57.231 30.435 16.68 0.00 0.00 1.94
861 952 5.365403 AATGCATGCCAACAATGAAAAAG 57.635 34.783 16.68 0.00 0.00 2.27
862 953 3.139850 TGCATGCCAACAATGAAAAAGG 58.860 40.909 16.68 0.00 0.00 3.11
863 954 2.095617 GCATGCCAACAATGAAAAAGGC 60.096 45.455 6.36 0.00 42.32 4.35
864 955 2.252976 TGCCAACAATGAAAAAGGCC 57.747 45.000 0.00 0.00 41.33 5.19
865 956 1.767681 TGCCAACAATGAAAAAGGCCT 59.232 42.857 0.00 0.00 41.33 5.19
866 957 2.224257 TGCCAACAATGAAAAAGGCCTC 60.224 45.455 5.23 0.00 41.33 4.70
867 958 2.871637 GCCAACAATGAAAAAGGCCTCC 60.872 50.000 5.23 0.00 36.17 4.30
868 959 2.634453 CCAACAATGAAAAAGGCCTCCT 59.366 45.455 5.23 0.00 33.87 3.69
869 960 3.555586 CCAACAATGAAAAAGGCCTCCTG 60.556 47.826 5.23 0.00 32.13 3.86
870 961 2.250924 ACAATGAAAAAGGCCTCCTGG 58.749 47.619 5.23 0.00 32.13 4.45
871 962 2.158325 ACAATGAAAAAGGCCTCCTGGA 60.158 45.455 5.23 0.00 32.13 3.86
872 963 2.494870 CAATGAAAAAGGCCTCCTGGAG 59.505 50.000 17.02 17.02 32.13 3.86
880 971 3.002371 CCTCCTGGAGGGGCTTTC 58.998 66.667 31.49 0.00 45.43 2.62
881 972 2.586792 CTCCTGGAGGGGCTTTCG 59.413 66.667 16.19 0.00 35.41 3.46
882 973 3.009115 TCCTGGAGGGGCTTTCGG 61.009 66.667 0.00 0.00 35.41 4.30
883 974 4.115199 CCTGGAGGGGCTTTCGGG 62.115 72.222 0.00 0.00 0.00 5.14
884 975 4.115199 CTGGAGGGGCTTTCGGGG 62.115 72.222 0.00 0.00 0.00 5.73
899 990 3.866582 GGGGGACGGCTGGAGATG 61.867 72.222 0.00 0.00 0.00 2.90
900 991 4.554036 GGGGACGGCTGGAGATGC 62.554 72.222 0.00 0.00 0.00 3.91
901 992 3.474570 GGGACGGCTGGAGATGCT 61.475 66.667 0.00 0.00 0.00 3.79
902 993 2.202987 GGACGGCTGGAGATGCTG 60.203 66.667 0.00 0.00 42.11 4.41
928 1019 1.545582 CACACCCCTTTGCACCATAAG 59.454 52.381 0.00 0.00 0.00 1.73
933 1024 2.450476 CCCTTTGCACCATAAGCTCTT 58.550 47.619 0.00 0.00 0.00 2.85
938 1029 1.340017 TGCACCATAAGCTCTTCACCC 60.340 52.381 0.00 0.00 0.00 4.61
942 1033 2.304761 ACCATAAGCTCTTCACCCGAAA 59.695 45.455 0.00 0.00 0.00 3.46
1014 1108 3.058224 CCAAAACCATGAACTTCTCCGTC 60.058 47.826 0.00 0.00 0.00 4.79
1207 1301 1.512310 GTCGCTGACGTTCTCCTCG 60.512 63.158 0.00 0.00 41.18 4.63
1217 1311 3.239627 TTCTCCTCGCCTCCCAGGT 62.240 63.158 0.00 0.00 37.80 4.00
1412 1506 0.318529 CTCTCTGATCCATCACGCCG 60.319 60.000 0.00 0.00 32.50 6.46
1461 1555 0.979665 CTTCTGGTGCTCCCTCTCAA 59.020 55.000 1.59 0.00 0.00 3.02
1495 1589 4.521062 CTCCGGAAGCTGAGGCGG 62.521 72.222 5.23 0.00 44.37 6.13
1814 2282 0.681887 CATGGTGGAGGCAGCAATGA 60.682 55.000 0.00 0.00 36.11 2.57
2203 2717 4.803329 AATCTTGGGAGGATGCTGTAAT 57.197 40.909 0.00 0.00 0.00 1.89
2211 2725 1.745087 AGGATGCTGTAATTGTTGCCG 59.255 47.619 0.00 0.00 0.00 5.69
2284 2798 0.035630 ACAGATGCTCCAAGGACTGC 60.036 55.000 4.81 0.00 0.00 4.40
2401 2920 0.610687 AGGCTGCCACAGAAGTACTC 59.389 55.000 22.65 0.00 32.44 2.59
2437 2956 7.054124 TGGTATCTCCAAATTTGTCAGGATAC 58.946 38.462 23.52 23.52 44.12 2.24
2527 3046 5.528043 AGTGTTGTTTGATTGGTTATGCA 57.472 34.783 0.00 0.00 0.00 3.96
2560 3080 3.611025 TTGGTTCTTCAAAGGGTCCAT 57.389 42.857 0.00 0.00 0.00 3.41
2633 3153 5.755861 GCTCCTCTTGTTGAATACATAGACC 59.244 44.000 0.00 0.00 36.44 3.85
2914 3434 0.668535 GCATTGGCCGAAACCTATCC 59.331 55.000 0.00 0.00 0.00 2.59
3011 3531 8.746751 CATAATCATCTAGTGTTACAGTGTTCG 58.253 37.037 0.00 0.00 0.00 3.95
3030 3550 2.560542 TCGCCTTGTAATGGTTTGCATT 59.439 40.909 0.00 0.00 32.80 3.56
3040 3560 8.574251 TGTAATGGTTTGCATTTCATAGTACT 57.426 30.769 0.00 0.00 0.00 2.73
3041 3561 9.019656 TGTAATGGTTTGCATTTCATAGTACTT 57.980 29.630 0.00 0.00 0.00 2.24
3042 3562 9.855021 GTAATGGTTTGCATTTCATAGTACTTT 57.145 29.630 0.00 0.00 0.00 2.66
3044 3564 9.777297 AATGGTTTGCATTTCATAGTACTTTTT 57.223 25.926 0.00 0.00 0.00 1.94
3072 3592 3.878667 GGGATTCCCCGGCCTCTG 61.879 72.222 11.02 0.00 44.02 3.35
3073 3593 4.570874 GGATTCCCCGGCCTCTGC 62.571 72.222 0.00 0.00 0.00 4.26
3074 3594 3.797353 GATTCCCCGGCCTCTGCA 61.797 66.667 0.00 0.00 40.13 4.41
3075 3595 3.099170 ATTCCCCGGCCTCTGCAT 61.099 61.111 0.00 0.00 40.13 3.96
3076 3596 3.125376 ATTCCCCGGCCTCTGCATC 62.125 63.158 0.00 0.00 40.13 3.91
3078 3598 4.559063 CCCCGGCCTCTGCATCAG 62.559 72.222 0.00 0.00 40.13 2.90
3079 3599 3.473647 CCCGGCCTCTGCATCAGA 61.474 66.667 0.00 0.00 38.25 3.27
3080 3600 2.586245 CCGGCCTCTGCATCAGAA 59.414 61.111 0.00 0.00 40.18 3.02
3081 3601 1.078214 CCGGCCTCTGCATCAGAAA 60.078 57.895 0.00 0.00 40.18 2.52
3082 3602 1.094073 CCGGCCTCTGCATCAGAAAG 61.094 60.000 0.00 0.00 40.18 2.62
3083 3603 0.107993 CGGCCTCTGCATCAGAAAGA 60.108 55.000 0.00 0.00 40.18 2.52
3084 3604 1.474677 CGGCCTCTGCATCAGAAAGAT 60.475 52.381 0.00 0.00 40.18 2.40
3094 3614 4.436242 CATCAGAAAGATGCATATGGCC 57.564 45.455 0.00 0.00 46.90 5.36
3095 3615 3.581265 TCAGAAAGATGCATATGGCCA 57.419 42.857 8.56 8.56 43.89 5.36
3096 3616 4.108501 TCAGAAAGATGCATATGGCCAT 57.891 40.909 24.45 24.45 43.89 4.40
3097 3617 4.077108 TCAGAAAGATGCATATGGCCATC 58.923 43.478 24.80 8.97 43.89 3.51
3098 3618 4.079970 CAGAAAGATGCATATGGCCATCT 58.920 43.478 24.80 10.30 43.89 2.90
3099 3619 4.523173 CAGAAAGATGCATATGGCCATCTT 59.477 41.667 24.80 22.74 44.66 2.40
3100 3620 5.708697 CAGAAAGATGCATATGGCCATCTTA 59.291 40.000 25.96 5.04 43.35 2.10
3101 3621 6.377429 CAGAAAGATGCATATGGCCATCTTAT 59.623 38.462 25.96 19.09 43.35 1.73
3102 3622 6.952358 AGAAAGATGCATATGGCCATCTTATT 59.048 34.615 25.96 17.52 43.35 1.40
3103 3623 8.111545 AGAAAGATGCATATGGCCATCTTATTA 58.888 33.333 25.96 3.19 43.35 0.98
3104 3624 8.654485 AAAGATGCATATGGCCATCTTATTAA 57.346 30.769 25.96 2.28 43.35 1.40
3105 3625 7.636150 AGATGCATATGGCCATCTTATTAAC 57.364 36.000 24.80 8.42 43.89 2.01
3106 3626 6.604795 AGATGCATATGGCCATCTTATTAACC 59.395 38.462 24.80 4.71 43.89 2.85
3107 3627 5.639139 TGCATATGGCCATCTTATTAACCA 58.361 37.500 24.80 0.00 43.89 3.67
3108 3628 6.073981 TGCATATGGCCATCTTATTAACCAA 58.926 36.000 24.80 0.00 43.89 3.67
3109 3629 6.552725 TGCATATGGCCATCTTATTAACCAAA 59.447 34.615 24.80 0.00 43.89 3.28
3110 3630 7.235193 TGCATATGGCCATCTTATTAACCAAAT 59.765 33.333 24.80 1.71 43.89 2.32
3111 3631 8.748412 GCATATGGCCATCTTATTAACCAAATA 58.252 33.333 24.80 0.00 36.11 1.40
3115 3635 8.602472 TGGCCATCTTATTAACCAAATAAAGT 57.398 30.769 0.00 0.00 39.10 2.66
3116 3636 9.702253 TGGCCATCTTATTAACCAAATAAAGTA 57.298 29.630 0.00 0.00 39.10 2.24
3122 3642 9.742144 TCTTATTAACCAAATAAAGTAGTGCCA 57.258 29.630 0.00 0.00 39.10 4.92
3125 3645 7.584122 TTAACCAAATAAAGTAGTGCCAACA 57.416 32.000 0.00 0.00 0.00 3.33
3126 3646 6.664428 AACCAAATAAAGTAGTGCCAACAT 57.336 33.333 0.00 0.00 0.00 2.71
3127 3647 6.024552 ACCAAATAAAGTAGTGCCAACATG 57.975 37.500 0.00 0.00 0.00 3.21
3128 3648 5.047377 ACCAAATAAAGTAGTGCCAACATGG 60.047 40.000 0.00 0.00 41.55 3.66
3129 3649 5.047377 CCAAATAAAGTAGTGCCAACATGGT 60.047 40.000 0.00 0.00 40.46 3.55
3130 3650 6.454795 CAAATAAAGTAGTGCCAACATGGTT 58.545 36.000 0.00 0.00 40.46 3.67
3131 3651 5.897377 ATAAAGTAGTGCCAACATGGTTC 57.103 39.130 0.00 0.00 40.46 3.62
3132 3652 2.200373 AGTAGTGCCAACATGGTTCC 57.800 50.000 0.00 0.00 40.46 3.62
3133 3653 1.423541 AGTAGTGCCAACATGGTTCCA 59.576 47.619 0.00 0.00 40.46 3.53
3134 3654 2.158534 AGTAGTGCCAACATGGTTCCAA 60.159 45.455 0.00 0.00 40.46 3.53
3135 3655 1.786937 AGTGCCAACATGGTTCCAAA 58.213 45.000 0.00 0.00 40.46 3.28
3136 3656 2.328319 AGTGCCAACATGGTTCCAAAT 58.672 42.857 0.00 0.00 40.46 2.32
3137 3657 3.505386 AGTGCCAACATGGTTCCAAATA 58.495 40.909 0.00 0.00 40.46 1.40
3138 3658 3.900601 AGTGCCAACATGGTTCCAAATAA 59.099 39.130 0.00 0.00 40.46 1.40
3139 3659 4.346418 AGTGCCAACATGGTTCCAAATAAA 59.654 37.500 0.00 0.00 40.46 1.40
3140 3660 4.690280 GTGCCAACATGGTTCCAAATAAAG 59.310 41.667 0.00 0.00 40.46 1.85
3141 3661 4.346418 TGCCAACATGGTTCCAAATAAAGT 59.654 37.500 0.00 0.00 40.46 2.66
3142 3662 5.540337 TGCCAACATGGTTCCAAATAAAGTA 59.460 36.000 0.00 0.00 40.46 2.24
3143 3663 6.099341 GCCAACATGGTTCCAAATAAAGTAG 58.901 40.000 0.00 0.00 40.46 2.57
3144 3664 6.295067 GCCAACATGGTTCCAAATAAAGTAGT 60.295 38.462 0.00 0.00 40.46 2.73
3145 3665 7.090173 CCAACATGGTTCCAAATAAAGTAGTG 58.910 38.462 0.00 0.00 31.35 2.74
3146 3666 6.267496 ACATGGTTCCAAATAAAGTAGTGC 57.733 37.500 0.00 0.00 0.00 4.40
3147 3667 5.185056 ACATGGTTCCAAATAAAGTAGTGCC 59.815 40.000 0.00 0.00 0.00 5.01
3148 3668 4.730966 TGGTTCCAAATAAAGTAGTGCCA 58.269 39.130 0.00 0.00 0.00 4.92
3149 3669 5.141182 TGGTTCCAAATAAAGTAGTGCCAA 58.859 37.500 0.00 0.00 0.00 4.52
3150 3670 5.010213 TGGTTCCAAATAAAGTAGTGCCAAC 59.990 40.000 0.00 0.00 0.00 3.77
3151 3671 5.010213 GGTTCCAAATAAAGTAGTGCCAACA 59.990 40.000 0.00 0.00 0.00 3.33
3152 3672 6.295067 GGTTCCAAATAAAGTAGTGCCAACAT 60.295 38.462 0.00 0.00 0.00 2.71
3153 3673 6.266168 TCCAAATAAAGTAGTGCCAACATG 57.734 37.500 0.00 0.00 0.00 3.21
3154 3674 5.184864 TCCAAATAAAGTAGTGCCAACATGG 59.815 40.000 0.00 0.00 41.55 3.66
3155 3675 5.047377 CCAAATAAAGTAGTGCCAACATGGT 60.047 40.000 0.00 0.00 40.46 3.55
3156 3676 6.454795 CAAATAAAGTAGTGCCAACATGGTT 58.545 36.000 0.00 0.00 40.46 3.67
3157 3677 5.897377 ATAAAGTAGTGCCAACATGGTTC 57.103 39.130 0.00 0.00 40.46 3.62
3158 3678 2.200373 AGTAGTGCCAACATGGTTCC 57.800 50.000 0.00 0.00 40.46 3.62
3159 3679 1.423541 AGTAGTGCCAACATGGTTCCA 59.576 47.619 0.00 0.00 40.46 3.53
3160 3680 2.158534 AGTAGTGCCAACATGGTTCCAA 60.159 45.455 0.00 0.00 40.46 3.53
3161 3681 1.786937 AGTGCCAACATGGTTCCAAA 58.213 45.000 0.00 0.00 40.46 3.28
3162 3682 1.688197 AGTGCCAACATGGTTCCAAAG 59.312 47.619 0.00 0.00 40.46 2.77
3163 3683 1.047002 TGCCAACATGGTTCCAAAGG 58.953 50.000 0.00 0.00 40.46 3.11
3164 3684 1.047801 GCCAACATGGTTCCAAAGGT 58.952 50.000 0.00 0.00 40.46 3.50
3165 3685 1.000843 GCCAACATGGTTCCAAAGGTC 59.999 52.381 0.00 0.00 40.46 3.85
3166 3686 2.597455 CCAACATGGTTCCAAAGGTCT 58.403 47.619 0.00 0.00 31.35 3.85
3167 3687 2.558359 CCAACATGGTTCCAAAGGTCTC 59.442 50.000 0.00 0.00 31.35 3.36
3168 3688 2.558359 CAACATGGTTCCAAAGGTCTCC 59.442 50.000 0.00 0.00 0.00 3.71
3169 3689 1.780309 ACATGGTTCCAAAGGTCTCCA 59.220 47.619 0.00 0.00 0.00 3.86
3170 3690 2.176798 ACATGGTTCCAAAGGTCTCCAA 59.823 45.455 0.00 0.00 0.00 3.53
3171 3691 3.230134 CATGGTTCCAAAGGTCTCCAAA 58.770 45.455 0.00 0.00 0.00 3.28
3172 3692 3.390175 TGGTTCCAAAGGTCTCCAAAA 57.610 42.857 0.00 0.00 0.00 2.44
3173 3693 3.714144 TGGTTCCAAAGGTCTCCAAAAA 58.286 40.909 0.00 0.00 0.00 1.94
3174 3694 4.294347 TGGTTCCAAAGGTCTCCAAAAAT 58.706 39.130 0.00 0.00 0.00 1.82
3175 3695 5.459505 TGGTTCCAAAGGTCTCCAAAAATA 58.540 37.500 0.00 0.00 0.00 1.40
3176 3696 5.900123 TGGTTCCAAAGGTCTCCAAAAATAA 59.100 36.000 0.00 0.00 0.00 1.40
3177 3697 6.556874 TGGTTCCAAAGGTCTCCAAAAATAAT 59.443 34.615 0.00 0.00 0.00 1.28
3178 3698 7.730784 TGGTTCCAAAGGTCTCCAAAAATAATA 59.269 33.333 0.00 0.00 0.00 0.98
3179 3699 8.590204 GGTTCCAAAGGTCTCCAAAAATAATAA 58.410 33.333 0.00 0.00 0.00 1.40
3180 3700 9.990360 GTTCCAAAGGTCTCCAAAAATAATAAA 57.010 29.630 0.00 0.00 0.00 1.40
3200 3720 3.427161 AAAAGCACAGAAAGCTCACAC 57.573 42.857 0.00 0.00 42.53 3.82
3201 3721 2.042686 AAGCACAGAAAGCTCACACA 57.957 45.000 0.00 0.00 42.53 3.72
3202 3722 1.590932 AGCACAGAAAGCTCACACAG 58.409 50.000 0.00 0.00 38.01 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 4.082523 CCACGTCACCGCCCATCT 62.083 66.667 0.00 0.00 37.70 2.90
114 115 4.208686 CCGCCGTGGAGTCCTAGC 62.209 72.222 11.33 9.46 42.00 3.42
131 222 2.147150 GAGCACAAACTCAAGGAGGAC 58.853 52.381 0.00 0.00 36.65 3.85
139 230 2.320215 CTTGGCGAGCACAAACTCA 58.680 52.632 0.00 0.00 36.42 3.41
186 277 0.038166 GCCATTGAAGTCCTGGACCA 59.962 55.000 22.81 12.11 32.18 4.02
269 360 1.919933 TCATCCTCCTCCTCCTCTCT 58.080 55.000 0.00 0.00 0.00 3.10
568 659 4.373116 TGTGAAGGACTCGGCGGC 62.373 66.667 7.21 0.00 0.00 6.53
569 660 2.432628 GTGTGAAGGACTCGGCGG 60.433 66.667 7.21 0.00 0.00 6.13
570 661 1.734477 CAGTGTGAAGGACTCGGCG 60.734 63.158 0.00 0.00 0.00 6.46
571 662 1.374758 CCAGTGTGAAGGACTCGGC 60.375 63.158 0.00 0.00 0.00 5.54
572 663 1.374758 GCCAGTGTGAAGGACTCGG 60.375 63.158 0.00 0.00 0.00 4.63
573 664 1.374758 GGCCAGTGTGAAGGACTCG 60.375 63.158 0.00 0.00 0.00 4.18
574 665 0.326264 ATGGCCAGTGTGAAGGACTC 59.674 55.000 13.05 0.00 32.68 3.36
575 666 0.037303 CATGGCCAGTGTGAAGGACT 59.963 55.000 13.05 0.00 32.68 3.85
576 667 0.036732 TCATGGCCAGTGTGAAGGAC 59.963 55.000 13.05 0.00 0.00 3.85
577 668 0.036732 GTCATGGCCAGTGTGAAGGA 59.963 55.000 13.05 0.00 0.00 3.36
578 669 1.300971 CGTCATGGCCAGTGTGAAGG 61.301 60.000 13.05 2.19 0.00 3.46
579 670 1.300971 CCGTCATGGCCAGTGTGAAG 61.301 60.000 13.05 12.57 0.00 3.02
580 671 1.302431 CCGTCATGGCCAGTGTGAA 60.302 57.895 13.05 0.00 0.00 3.18
581 672 2.347114 CCGTCATGGCCAGTGTGA 59.653 61.111 13.05 7.64 0.00 3.58
582 673 2.747460 CCCGTCATGGCCAGTGTG 60.747 66.667 13.05 4.75 35.87 3.82
583 674 4.033776 CCCCGTCATGGCCAGTGT 62.034 66.667 13.05 0.00 35.87 3.55
591 682 3.925362 TTCGTGTCGCCCCGTCATG 62.925 63.158 0.00 0.00 34.40 3.07
592 683 3.687102 TTCGTGTCGCCCCGTCAT 61.687 61.111 0.00 0.00 0.00 3.06
593 684 4.651008 GTTCGTGTCGCCCCGTCA 62.651 66.667 0.00 0.00 0.00 4.35
598 689 4.047059 TCCTCGTTCGTGTCGCCC 62.047 66.667 0.00 0.00 0.00 6.13
599 690 2.804090 GTCCTCGTTCGTGTCGCC 60.804 66.667 0.00 0.00 0.00 5.54
600 691 3.164011 CGTCCTCGTTCGTGTCGC 61.164 66.667 0.00 0.00 0.00 5.19
601 692 2.501222 CCGTCCTCGTTCGTGTCG 60.501 66.667 0.00 0.00 35.01 4.35
602 693 2.804090 GCCGTCCTCGTTCGTGTC 60.804 66.667 0.00 0.00 35.01 3.67
603 694 4.695231 CGCCGTCCTCGTTCGTGT 62.695 66.667 0.00 0.00 35.01 4.49
607 698 4.368543 AACCCGCCGTCCTCGTTC 62.369 66.667 0.00 0.00 35.01 3.95
608 699 4.368543 GAACCCGCCGTCCTCGTT 62.369 66.667 0.00 0.00 35.01 3.85
622 713 3.423154 CTCCAGCAACGCCGGAAC 61.423 66.667 5.05 0.00 0.00 3.62
628 719 4.099170 CTGCAGCTCCAGCAACGC 62.099 66.667 0.00 1.25 45.16 4.84
629 720 3.429141 CCTGCAGCTCCAGCAACG 61.429 66.667 8.66 0.00 45.16 4.10
630 721 2.033141 TCCTGCAGCTCCAGCAAC 59.967 61.111 8.66 0.00 45.16 4.17
631 722 2.181445 CTCTCCTGCAGCTCCAGCAA 62.181 60.000 8.66 0.00 45.16 3.91
632 723 2.605601 TCTCCTGCAGCTCCAGCA 60.606 61.111 8.66 0.00 45.16 4.41
633 724 2.187424 CTCTCCTGCAGCTCCAGC 59.813 66.667 8.66 0.00 42.49 4.85
634 725 1.678598 CCTCTCTCCTGCAGCTCCAG 61.679 65.000 8.66 0.00 0.00 3.86
635 726 1.685077 CCTCTCTCCTGCAGCTCCA 60.685 63.158 8.66 0.00 0.00 3.86
636 727 3.092780 GCCTCTCTCCTGCAGCTCC 62.093 68.421 8.66 0.00 0.00 4.70
637 728 2.500646 GCCTCTCTCCTGCAGCTC 59.499 66.667 8.66 0.00 0.00 4.09
638 729 3.082701 GGCCTCTCTCCTGCAGCT 61.083 66.667 8.66 0.00 0.00 4.24
639 730 2.744243 ATGGCCTCTCTCCTGCAGC 61.744 63.158 8.66 0.00 0.00 5.25
640 731 1.146485 CATGGCCTCTCTCCTGCAG 59.854 63.158 6.78 6.78 0.00 4.41
641 732 3.040206 GCATGGCCTCTCTCCTGCA 62.040 63.158 3.32 0.00 32.10 4.41
642 733 2.203181 GCATGGCCTCTCTCCTGC 60.203 66.667 3.32 0.00 0.00 4.85
643 734 1.153208 GTGCATGGCCTCTCTCCTG 60.153 63.158 3.32 0.00 0.00 3.86
644 735 2.729479 CGTGCATGGCCTCTCTCCT 61.729 63.158 3.32 0.00 0.00 3.69
645 736 2.202987 CGTGCATGGCCTCTCTCC 60.203 66.667 3.32 0.00 0.00 3.71
646 737 1.812922 CACGTGCATGGCCTCTCTC 60.813 63.158 11.36 0.00 0.00 3.20
647 738 2.267006 CACGTGCATGGCCTCTCT 59.733 61.111 11.36 0.00 0.00 3.10
648 739 2.821366 CCACGTGCATGGCCTCTC 60.821 66.667 10.91 0.00 31.52 3.20
649 740 3.640407 ACCACGTGCATGGCCTCT 61.640 61.111 10.91 0.00 44.33 3.69
650 741 3.434319 CACCACGTGCATGGCCTC 61.434 66.667 10.91 0.00 44.33 4.70
651 742 3.907260 CTCACCACGTGCATGGCCT 62.907 63.158 10.91 0.00 44.33 5.19
652 743 3.434319 CTCACCACGTGCATGGCC 61.434 66.667 10.91 0.00 44.33 5.36
653 744 4.107051 GCTCACCACGTGCATGGC 62.107 66.667 10.91 11.84 44.33 4.40
654 745 3.434319 GGCTCACCACGTGCATGG 61.434 66.667 10.91 7.92 46.10 3.66
655 746 2.359107 AGGCTCACCACGTGCATG 60.359 61.111 10.91 10.87 39.06 4.06
656 747 2.359107 CAGGCTCACCACGTGCAT 60.359 61.111 10.91 0.00 39.06 3.96
657 748 3.860605 ACAGGCTCACCACGTGCA 61.861 61.111 10.91 0.00 39.06 4.57
658 749 3.349006 CACAGGCTCACCACGTGC 61.349 66.667 10.91 0.00 39.06 5.34
659 750 1.665916 CTCACAGGCTCACCACGTG 60.666 63.158 9.08 9.08 40.98 4.49
660 751 2.737180 CTCACAGGCTCACCACGT 59.263 61.111 0.00 0.00 39.06 4.49
661 752 2.047844 CCTCACAGGCTCACCACG 60.048 66.667 0.00 0.00 39.06 4.94
662 753 0.108585 TTTCCTCACAGGCTCACCAC 59.891 55.000 0.00 0.00 39.06 4.16
663 754 0.843309 TTTTCCTCACAGGCTCACCA 59.157 50.000 0.00 0.00 39.06 4.17
664 755 2.206576 ATTTTCCTCACAGGCTCACC 57.793 50.000 0.00 0.00 34.61 4.02
665 756 3.691609 CCTTATTTTCCTCACAGGCTCAC 59.308 47.826 0.00 0.00 34.61 3.51
666 757 3.587061 TCCTTATTTTCCTCACAGGCTCA 59.413 43.478 0.00 0.00 34.61 4.26
667 758 4.080863 TCTCCTTATTTTCCTCACAGGCTC 60.081 45.833 0.00 0.00 34.61 4.70
668 759 3.846588 TCTCCTTATTTTCCTCACAGGCT 59.153 43.478 0.00 0.00 34.61 4.58
669 760 4.080863 TCTCTCCTTATTTTCCTCACAGGC 60.081 45.833 0.00 0.00 34.61 4.85
670 761 5.396213 CCTCTCTCCTTATTTTCCTCACAGG 60.396 48.000 0.00 0.00 36.46 4.00
671 762 5.188751 ACCTCTCTCCTTATTTTCCTCACAG 59.811 44.000 0.00 0.00 0.00 3.66
672 763 5.094387 ACCTCTCTCCTTATTTTCCTCACA 58.906 41.667 0.00 0.00 0.00 3.58
673 764 5.685520 ACCTCTCTCCTTATTTTCCTCAC 57.314 43.478 0.00 0.00 0.00 3.51
674 765 5.785423 TCAACCTCTCTCCTTATTTTCCTCA 59.215 40.000 0.00 0.00 0.00 3.86
675 766 6.110033 GTCAACCTCTCTCCTTATTTTCCTC 58.890 44.000 0.00 0.00 0.00 3.71
676 767 5.337652 CGTCAACCTCTCTCCTTATTTTCCT 60.338 44.000 0.00 0.00 0.00 3.36
677 768 4.870991 CGTCAACCTCTCTCCTTATTTTCC 59.129 45.833 0.00 0.00 0.00 3.13
678 769 5.348997 CACGTCAACCTCTCTCCTTATTTTC 59.651 44.000 0.00 0.00 0.00 2.29
679 770 5.221661 ACACGTCAACCTCTCTCCTTATTTT 60.222 40.000 0.00 0.00 0.00 1.82
680 771 4.283722 ACACGTCAACCTCTCTCCTTATTT 59.716 41.667 0.00 0.00 0.00 1.40
681 772 3.833070 ACACGTCAACCTCTCTCCTTATT 59.167 43.478 0.00 0.00 0.00 1.40
682 773 3.193691 CACACGTCAACCTCTCTCCTTAT 59.806 47.826 0.00 0.00 0.00 1.73
683 774 2.557056 CACACGTCAACCTCTCTCCTTA 59.443 50.000 0.00 0.00 0.00 2.69
684 775 1.341531 CACACGTCAACCTCTCTCCTT 59.658 52.381 0.00 0.00 0.00 3.36
685 776 0.962489 CACACGTCAACCTCTCTCCT 59.038 55.000 0.00 0.00 0.00 3.69
686 777 0.038159 CCACACGTCAACCTCTCTCC 60.038 60.000 0.00 0.00 0.00 3.71
687 778 0.038159 CCCACACGTCAACCTCTCTC 60.038 60.000 0.00 0.00 0.00 3.20
688 779 1.472662 CCCCACACGTCAACCTCTCT 61.473 60.000 0.00 0.00 0.00 3.10
689 780 1.004918 CCCCACACGTCAACCTCTC 60.005 63.158 0.00 0.00 0.00 3.20
690 781 3.148084 CCCCACACGTCAACCTCT 58.852 61.111 0.00 0.00 0.00 3.69
691 782 2.668550 GCCCCACACGTCAACCTC 60.669 66.667 0.00 0.00 0.00 3.85
692 783 2.279037 AAAGCCCCACACGTCAACCT 62.279 55.000 0.00 0.00 0.00 3.50
693 784 1.388837 AAAAGCCCCACACGTCAACC 61.389 55.000 0.00 0.00 0.00 3.77
694 785 0.248866 CAAAAGCCCCACACGTCAAC 60.249 55.000 0.00 0.00 0.00 3.18
695 786 2.010582 GCAAAAGCCCCACACGTCAA 62.011 55.000 0.00 0.00 0.00 3.18
696 787 2.485795 GCAAAAGCCCCACACGTCA 61.486 57.895 0.00 0.00 0.00 4.35
697 788 1.805428 ATGCAAAAGCCCCACACGTC 61.805 55.000 0.00 0.00 0.00 4.34
698 789 1.832167 ATGCAAAAGCCCCACACGT 60.832 52.632 0.00 0.00 0.00 4.49
699 790 1.373246 CATGCAAAAGCCCCACACG 60.373 57.895 0.00 0.00 0.00 4.49
700 791 0.392336 TTCATGCAAAAGCCCCACAC 59.608 50.000 0.00 0.00 0.00 3.82
701 792 1.126488 TTTCATGCAAAAGCCCCACA 58.874 45.000 0.00 0.00 0.00 4.17
702 793 2.252976 TTTTCATGCAAAAGCCCCAC 57.747 45.000 0.00 0.00 30.07 4.61
731 822 4.792804 GGAGCAGCTGGGAGTGCC 62.793 72.222 17.12 0.00 40.81 5.01
732 823 4.025858 TGGAGCAGCTGGGAGTGC 62.026 66.667 17.12 0.00 40.17 4.40
733 824 2.046507 GTGGAGCAGCTGGGAGTG 60.047 66.667 17.12 0.00 0.00 3.51
734 825 2.527624 TGTGGAGCAGCTGGGAGT 60.528 61.111 17.12 0.00 0.00 3.85
735 826 2.268280 CTGTGGAGCAGCTGGGAG 59.732 66.667 17.12 0.00 38.52 4.30
744 835 0.538287 AACCCAGAAAGCTGTGGAGC 60.538 55.000 10.88 0.00 46.64 4.70
745 836 1.986882 AAACCCAGAAAGCTGTGGAG 58.013 50.000 10.88 4.83 38.29 3.86
746 837 2.224769 CCTAAACCCAGAAAGCTGTGGA 60.225 50.000 10.88 0.00 38.29 4.02
747 838 2.162681 CCTAAACCCAGAAAGCTGTGG 58.837 52.381 3.46 3.46 40.63 4.17
748 839 2.863809 ACCTAAACCCAGAAAGCTGTG 58.136 47.619 0.00 0.00 40.63 3.66
749 840 3.117663 TCAACCTAAACCCAGAAAGCTGT 60.118 43.478 0.00 0.00 40.63 4.40
750 841 3.486383 TCAACCTAAACCCAGAAAGCTG 58.514 45.455 0.00 0.00 41.93 4.24
751 842 3.394606 TCTCAACCTAAACCCAGAAAGCT 59.605 43.478 0.00 0.00 0.00 3.74
752 843 3.751518 TCTCAACCTAAACCCAGAAAGC 58.248 45.455 0.00 0.00 0.00 3.51
753 844 4.631813 CGATCTCAACCTAAACCCAGAAAG 59.368 45.833 0.00 0.00 0.00 2.62
754 845 4.041198 ACGATCTCAACCTAAACCCAGAAA 59.959 41.667 0.00 0.00 0.00 2.52
755 846 3.581332 ACGATCTCAACCTAAACCCAGAA 59.419 43.478 0.00 0.00 0.00 3.02
756 847 3.170717 ACGATCTCAACCTAAACCCAGA 58.829 45.455 0.00 0.00 0.00 3.86
757 848 3.522553 GACGATCTCAACCTAAACCCAG 58.477 50.000 0.00 0.00 0.00 4.45
758 849 2.094390 CGACGATCTCAACCTAAACCCA 60.094 50.000 0.00 0.00 0.00 4.51
759 850 2.537401 CGACGATCTCAACCTAAACCC 58.463 52.381 0.00 0.00 0.00 4.11
760 851 2.537401 CCGACGATCTCAACCTAAACC 58.463 52.381 0.00 0.00 0.00 3.27
761 852 2.537401 CCCGACGATCTCAACCTAAAC 58.463 52.381 0.00 0.00 0.00 2.01
762 853 1.134907 GCCCGACGATCTCAACCTAAA 60.135 52.381 0.00 0.00 0.00 1.85
763 854 0.458669 GCCCGACGATCTCAACCTAA 59.541 55.000 0.00 0.00 0.00 2.69
764 855 2.112898 GCCCGACGATCTCAACCTA 58.887 57.895 0.00 0.00 0.00 3.08
765 856 2.893398 GCCCGACGATCTCAACCT 59.107 61.111 0.00 0.00 0.00 3.50
773 864 8.952370 ATTTAGCCAAATATACGCCCGACGAT 62.952 42.308 0.00 0.00 36.89 3.73
774 865 7.746145 ATTTAGCCAAATATACGCCCGACGA 62.746 44.000 0.00 0.00 36.89 4.20
775 866 5.618100 ATTTAGCCAAATATACGCCCGACG 61.618 45.833 0.00 0.00 39.12 5.12
776 867 2.443887 TAGCCAAATATACGCCCGAC 57.556 50.000 0.00 0.00 0.00 4.79
777 868 3.472283 TTTAGCCAAATATACGCCCGA 57.528 42.857 0.00 0.00 0.00 5.14
778 869 4.000988 AGATTTAGCCAAATATACGCCCG 58.999 43.478 0.00 0.00 34.44 6.13
779 870 5.001232 TCAGATTTAGCCAAATATACGCCC 58.999 41.667 0.00 0.00 34.44 6.13
780 871 5.389516 CGTCAGATTTAGCCAAATATACGCC 60.390 44.000 6.13 0.00 34.44 5.68
781 872 5.609088 CGTCAGATTTAGCCAAATATACGC 58.391 41.667 6.13 0.00 34.44 4.42
782 873 5.405571 AGCGTCAGATTTAGCCAAATATACG 59.594 40.000 11.66 11.66 37.04 3.06
783 874 6.787085 AGCGTCAGATTTAGCCAAATATAC 57.213 37.500 0.00 0.00 34.44 1.47
784 875 9.502091 AAATAGCGTCAGATTTAGCCAAATATA 57.498 29.630 0.00 0.00 34.44 0.86
785 876 7.986085 AATAGCGTCAGATTTAGCCAAATAT 57.014 32.000 0.00 0.00 34.44 1.28
786 877 7.497579 TGAAATAGCGTCAGATTTAGCCAAATA 59.502 33.333 0.00 0.00 34.44 1.40
787 878 6.318648 TGAAATAGCGTCAGATTTAGCCAAAT 59.681 34.615 0.00 0.00 37.06 2.32
788 879 5.645929 TGAAATAGCGTCAGATTTAGCCAAA 59.354 36.000 0.00 0.00 0.00 3.28
789 880 5.182487 TGAAATAGCGTCAGATTTAGCCAA 58.818 37.500 0.00 0.00 0.00 4.52
790 881 4.765273 TGAAATAGCGTCAGATTTAGCCA 58.235 39.130 0.00 0.00 0.00 4.75
791 882 4.212214 CCTGAAATAGCGTCAGATTTAGCC 59.788 45.833 10.21 0.00 44.44 3.93
792 883 5.050490 TCCTGAAATAGCGTCAGATTTAGC 58.950 41.667 10.21 0.00 44.44 3.09
793 884 7.151308 AGATCCTGAAATAGCGTCAGATTTAG 58.849 38.462 10.21 0.00 44.44 1.85
794 885 7.055667 AGATCCTGAAATAGCGTCAGATTTA 57.944 36.000 10.21 0.00 44.44 1.40
795 886 5.923204 AGATCCTGAAATAGCGTCAGATTT 58.077 37.500 10.21 0.00 44.44 2.17
796 887 5.543507 AGATCCTGAAATAGCGTCAGATT 57.456 39.130 10.21 0.03 44.44 2.40
797 888 5.184864 CCTAGATCCTGAAATAGCGTCAGAT 59.815 44.000 10.21 4.03 44.44 2.90
798 889 4.520874 CCTAGATCCTGAAATAGCGTCAGA 59.479 45.833 10.21 0.30 44.44 3.27
799 890 4.520874 TCCTAGATCCTGAAATAGCGTCAG 59.479 45.833 0.00 0.00 41.87 3.51
800 891 4.470602 TCCTAGATCCTGAAATAGCGTCA 58.529 43.478 0.00 0.00 0.00 4.35
801 892 4.617298 GCTCCTAGATCCTGAAATAGCGTC 60.617 50.000 0.00 0.00 0.00 5.19
802 893 3.257127 GCTCCTAGATCCTGAAATAGCGT 59.743 47.826 0.00 0.00 0.00 5.07
803 894 3.509575 AGCTCCTAGATCCTGAAATAGCG 59.490 47.826 0.00 0.00 32.82 4.26
804 895 4.526262 TCAGCTCCTAGATCCTGAAATAGC 59.474 45.833 0.00 0.00 31.90 2.97
805 896 5.774690 AGTCAGCTCCTAGATCCTGAAATAG 59.225 44.000 7.47 0.00 36.23 1.73
806 897 5.538053 CAGTCAGCTCCTAGATCCTGAAATA 59.462 44.000 7.47 0.00 36.23 1.40
807 898 4.344679 CAGTCAGCTCCTAGATCCTGAAAT 59.655 45.833 7.47 0.00 36.23 2.17
808 899 3.703556 CAGTCAGCTCCTAGATCCTGAAA 59.296 47.826 7.47 0.00 36.23 2.69
809 900 3.295093 CAGTCAGCTCCTAGATCCTGAA 58.705 50.000 7.47 0.00 36.23 3.02
810 901 2.424091 CCAGTCAGCTCCTAGATCCTGA 60.424 54.545 0.00 0.00 32.35 3.86
811 902 1.962807 CCAGTCAGCTCCTAGATCCTG 59.037 57.143 0.00 0.00 0.00 3.86
812 903 1.133199 CCCAGTCAGCTCCTAGATCCT 60.133 57.143 0.00 0.00 0.00 3.24
813 904 1.337118 CCCAGTCAGCTCCTAGATCC 58.663 60.000 0.00 0.00 0.00 3.36
814 905 0.678950 GCCCAGTCAGCTCCTAGATC 59.321 60.000 0.00 0.00 0.00 2.75
815 906 1.112315 CGCCCAGTCAGCTCCTAGAT 61.112 60.000 0.00 0.00 0.00 1.98
816 907 1.754621 CGCCCAGTCAGCTCCTAGA 60.755 63.158 0.00 0.00 0.00 2.43
817 908 1.323271 TTCGCCCAGTCAGCTCCTAG 61.323 60.000 0.00 0.00 0.00 3.02
818 909 0.902984 TTTCGCCCAGTCAGCTCCTA 60.903 55.000 0.00 0.00 0.00 2.94
819 910 1.768684 TTTTCGCCCAGTCAGCTCCT 61.769 55.000 0.00 0.00 0.00 3.69
820 911 0.889186 TTTTTCGCCCAGTCAGCTCC 60.889 55.000 0.00 0.00 0.00 4.70
821 912 2.629002 TTTTTCGCCCAGTCAGCTC 58.371 52.632 0.00 0.00 0.00 4.09
822 913 4.898607 TTTTTCGCCCAGTCAGCT 57.101 50.000 0.00 0.00 0.00 4.24
836 927 5.769484 TTTCATTGTTGGCATGCATTTTT 57.231 30.435 21.36 0.00 0.00 1.94
837 928 5.769484 TTTTCATTGTTGGCATGCATTTT 57.231 30.435 21.36 0.00 0.00 1.82
838 929 5.278561 CCTTTTTCATTGTTGGCATGCATTT 60.279 36.000 21.36 0.00 0.00 2.32
839 930 4.216687 CCTTTTTCATTGTTGGCATGCATT 59.783 37.500 21.36 0.00 0.00 3.56
840 931 3.754323 CCTTTTTCATTGTTGGCATGCAT 59.246 39.130 21.36 0.00 0.00 3.96
841 932 3.139850 CCTTTTTCATTGTTGGCATGCA 58.860 40.909 21.36 2.54 0.00 3.96
842 933 2.095617 GCCTTTTTCATTGTTGGCATGC 60.096 45.455 9.90 9.90 40.04 4.06
843 934 2.485038 GGCCTTTTTCATTGTTGGCATG 59.515 45.455 0.00 0.00 41.86 4.06
844 935 2.372837 AGGCCTTTTTCATTGTTGGCAT 59.627 40.909 0.00 0.00 41.86 4.40
845 936 1.767681 AGGCCTTTTTCATTGTTGGCA 59.232 42.857 0.00 0.00 41.86 4.92
846 937 2.416747 GAGGCCTTTTTCATTGTTGGC 58.583 47.619 6.77 0.00 39.61 4.52
847 938 2.634453 AGGAGGCCTTTTTCATTGTTGG 59.366 45.455 6.77 0.00 0.00 3.77
848 939 3.555586 CCAGGAGGCCTTTTTCATTGTTG 60.556 47.826 6.77 0.00 0.00 3.33
849 940 2.634453 CCAGGAGGCCTTTTTCATTGTT 59.366 45.455 6.77 0.00 0.00 2.83
850 941 2.158325 TCCAGGAGGCCTTTTTCATTGT 60.158 45.455 6.77 0.00 33.74 2.71
851 942 2.494870 CTCCAGGAGGCCTTTTTCATTG 59.505 50.000 6.77 0.00 33.74 2.82
852 943 2.558350 CCTCCAGGAGGCCTTTTTCATT 60.558 50.000 23.54 0.00 43.29 2.57
853 944 1.006400 CCTCCAGGAGGCCTTTTTCAT 59.994 52.381 23.54 0.00 43.29 2.57
854 945 0.405585 CCTCCAGGAGGCCTTTTTCA 59.594 55.000 23.54 0.00 43.29 2.69
855 946 3.272925 CCTCCAGGAGGCCTTTTTC 57.727 57.895 23.54 0.00 43.29 2.29
864 955 2.586792 CGAAAGCCCCTCCAGGAG 59.413 66.667 9.90 9.90 38.24 3.69
865 956 3.009115 CCGAAAGCCCCTCCAGGA 61.009 66.667 0.00 0.00 38.24 3.86
866 957 4.115199 CCCGAAAGCCCCTCCAGG 62.115 72.222 0.00 0.00 0.00 4.45
867 958 4.115199 CCCCGAAAGCCCCTCCAG 62.115 72.222 0.00 0.00 0.00 3.86
882 973 3.866582 CATCTCCAGCCGTCCCCC 61.867 72.222 0.00 0.00 0.00 5.40
883 974 4.554036 GCATCTCCAGCCGTCCCC 62.554 72.222 0.00 0.00 0.00 4.81
884 975 3.474570 AGCATCTCCAGCCGTCCC 61.475 66.667 0.00 0.00 0.00 4.46
885 976 2.202987 CAGCATCTCCAGCCGTCC 60.203 66.667 0.00 0.00 0.00 4.79
886 977 1.812922 CACAGCATCTCCAGCCGTC 60.813 63.158 0.00 0.00 0.00 4.79
887 978 2.236223 CTCACAGCATCTCCAGCCGT 62.236 60.000 0.00 0.00 0.00 5.68
888 979 1.521010 CTCACAGCATCTCCAGCCG 60.521 63.158 0.00 0.00 0.00 5.52
889 980 0.461693 GTCTCACAGCATCTCCAGCC 60.462 60.000 0.00 0.00 0.00 4.85
890 981 0.248565 TGTCTCACAGCATCTCCAGC 59.751 55.000 0.00 0.00 0.00 4.85
891 982 1.274447 TGTGTCTCACAGCATCTCCAG 59.726 52.381 0.00 0.00 39.62 3.86
892 983 1.001293 GTGTGTCTCACAGCATCTCCA 59.999 52.381 2.71 0.00 45.43 3.86
893 984 1.719600 GTGTGTCTCACAGCATCTCC 58.280 55.000 2.71 0.00 45.43 3.71
900 991 1.597742 CAAAGGGGTGTGTCTCACAG 58.402 55.000 7.31 0.00 45.43 3.66
902 993 0.465460 TGCAAAGGGGTGTGTCTCAC 60.465 55.000 0.00 0.00 45.47 3.51
942 1033 2.618709 CGAGGGTTCAGTTTGCTCTTTT 59.381 45.455 0.00 0.00 0.00 2.27
1207 1301 1.050988 TAGAGCATCACCTGGGAGGC 61.051 60.000 12.04 12.04 44.42 4.70
1430 1524 2.941415 GCACCAGAAGGGATGTTGGTAG 60.941 54.545 0.00 0.00 41.81 3.18
1495 1589 2.811317 CGCAGTCCAGAAGTCCGC 60.811 66.667 0.00 0.00 0.00 5.54
1923 2391 4.394712 CCGCTCTCCACACCACCC 62.395 72.222 0.00 0.00 0.00 4.61
1965 2433 3.016971 CCCTCAGCCCACCCATCA 61.017 66.667 0.00 0.00 0.00 3.07
2121 2635 5.591067 CAGATTCCCTAGTATATCCTCGGTC 59.409 48.000 0.00 0.00 0.00 4.79
2203 2717 0.743688 ATGACAAGCAACGGCAACAA 59.256 45.000 0.00 0.00 44.61 2.83
2211 2725 0.953727 TCAGCACCATGACAAGCAAC 59.046 50.000 0.00 0.00 0.00 4.17
2255 2769 1.547675 GGAGCATCTGTTCCAACCCAA 60.548 52.381 8.07 0.00 43.82 4.12
2284 2798 6.937436 ACAAGAACTACAACAAGGTAAAGG 57.063 37.500 0.00 0.00 0.00 3.11
2401 2920 4.271696 TGGAGATACCACAAAGTCACAG 57.728 45.455 0.00 0.00 44.64 3.66
2437 2956 0.236711 CTGCCAAAGACAAGAGCACG 59.763 55.000 0.00 0.00 0.00 5.34
2527 3046 2.880443 AGAACCAAAGTGGCATGACAT 58.120 42.857 3.50 0.00 42.67 3.06
2560 3080 4.825634 TCTTAGAAACTTCTCGAGTCACCA 59.174 41.667 13.13 0.00 37.72 4.17
2876 3396 7.598278 CCAATGCACCTTTTGTACATAACTTA 58.402 34.615 0.00 0.00 30.50 2.24
2892 3412 0.963355 TAGGTTTCGGCCAATGCACC 60.963 55.000 2.24 0.47 40.13 5.01
2901 3421 3.538634 AGTAGTTGGATAGGTTTCGGC 57.461 47.619 0.00 0.00 0.00 5.54
2945 3465 9.753674 AAGAGACCAAGTATTATGGAATTTTGA 57.246 29.630 0.00 0.00 40.56 2.69
2979 3499 7.966812 TGTAACACTAGATGATTATGATGCCT 58.033 34.615 0.00 0.00 0.00 4.75
2996 3516 2.210116 CAAGGCGAACACTGTAACACT 58.790 47.619 0.00 0.00 0.00 3.55
3011 3531 4.314121 TGAAATGCAAACCATTACAAGGC 58.686 39.130 0.00 0.00 43.22 4.35
3056 3576 4.570874 GCAGAGGCCGGGGAATCC 62.571 72.222 2.18 0.00 0.00 3.01
3057 3577 3.125376 ATGCAGAGGCCGGGGAATC 62.125 63.158 2.18 0.00 40.13 2.52
3058 3578 3.099170 ATGCAGAGGCCGGGGAAT 61.099 61.111 2.18 0.00 40.13 3.01
3059 3579 3.797353 GATGCAGAGGCCGGGGAA 61.797 66.667 2.18 0.00 40.13 3.97
3061 3581 4.559063 CTGATGCAGAGGCCGGGG 62.559 72.222 2.18 0.00 40.13 5.73
3062 3582 2.541547 TTTCTGATGCAGAGGCCGGG 62.542 60.000 2.18 0.00 41.75 5.73
3063 3583 1.078214 TTTCTGATGCAGAGGCCGG 60.078 57.895 0.00 0.00 41.75 6.13
3064 3584 0.107993 TCTTTCTGATGCAGAGGCCG 60.108 55.000 0.00 0.00 41.75 6.13
3065 3585 1.948145 CATCTTTCTGATGCAGAGGCC 59.052 52.381 0.00 0.00 44.96 5.19
3074 3594 4.108501 TGGCCATATGCATCTTTCTGAT 57.891 40.909 0.00 0.00 43.89 2.90
3075 3595 3.581265 TGGCCATATGCATCTTTCTGA 57.419 42.857 0.00 0.00 43.89 3.27
3076 3596 4.079970 AGATGGCCATATGCATCTTTCTG 58.920 43.478 20.84 0.00 43.89 3.02
3077 3597 4.383931 AGATGGCCATATGCATCTTTCT 57.616 40.909 20.84 5.13 43.89 2.52
3078 3598 6.770746 ATAAGATGGCCATATGCATCTTTC 57.229 37.500 28.51 2.37 41.16 2.62
3079 3599 8.526147 GTTAATAAGATGGCCATATGCATCTTT 58.474 33.333 28.51 19.95 41.16 2.52
3080 3600 7.123247 GGTTAATAAGATGGCCATATGCATCTT 59.877 37.037 27.39 27.39 43.67 2.40
3081 3601 6.604795 GGTTAATAAGATGGCCATATGCATCT 59.395 38.462 20.84 16.00 43.89 2.90
3082 3602 6.377996 TGGTTAATAAGATGGCCATATGCATC 59.622 38.462 20.84 5.84 43.89 3.91
3083 3603 6.255287 TGGTTAATAAGATGGCCATATGCAT 58.745 36.000 20.84 10.07 43.89 3.96
3084 3604 5.639139 TGGTTAATAAGATGGCCATATGCA 58.361 37.500 20.84 7.88 43.89 3.96
3085 3605 6.588719 TTGGTTAATAAGATGGCCATATGC 57.411 37.500 20.84 6.50 40.16 3.14
3089 3609 9.212593 ACTTTATTTGGTTAATAAGATGGCCAT 57.787 29.630 20.96 20.96 39.29 4.40
3090 3610 8.602472 ACTTTATTTGGTTAATAAGATGGCCA 57.398 30.769 8.56 8.56 39.29 5.36
3096 3616 9.742144 TGGCACTACTTTATTTGGTTAATAAGA 57.258 29.630 0.00 0.00 39.29 2.10
3099 3619 9.298250 TGTTGGCACTACTTTATTTGGTTAATA 57.702 29.630 0.00 0.00 0.00 0.98
3100 3620 8.184304 TGTTGGCACTACTTTATTTGGTTAAT 57.816 30.769 0.00 0.00 0.00 1.40
3101 3621 7.584122 TGTTGGCACTACTTTATTTGGTTAA 57.416 32.000 0.00 0.00 0.00 2.01
3102 3622 7.309499 CCATGTTGGCACTACTTTATTTGGTTA 60.309 37.037 0.00 0.00 0.00 2.85
3103 3623 6.454795 CATGTTGGCACTACTTTATTTGGTT 58.545 36.000 0.00 0.00 0.00 3.67
3104 3624 5.047377 CCATGTTGGCACTACTTTATTTGGT 60.047 40.000 0.00 0.00 0.00 3.67
3105 3625 5.047377 ACCATGTTGGCACTACTTTATTTGG 60.047 40.000 0.00 0.00 42.67 3.28
3106 3626 6.024552 ACCATGTTGGCACTACTTTATTTG 57.975 37.500 0.00 0.00 42.67 2.32
3107 3627 6.295067 GGAACCATGTTGGCACTACTTTATTT 60.295 38.462 0.00 0.00 42.67 1.40
3108 3628 5.185056 GGAACCATGTTGGCACTACTTTATT 59.815 40.000 0.00 0.00 42.67 1.40
3109 3629 4.705023 GGAACCATGTTGGCACTACTTTAT 59.295 41.667 0.00 0.00 42.67 1.40
3110 3630 4.076394 GGAACCATGTTGGCACTACTTTA 58.924 43.478 0.00 0.00 42.67 1.85
3111 3631 2.890945 GGAACCATGTTGGCACTACTTT 59.109 45.455 0.00 0.00 42.67 2.66
3112 3632 2.158534 TGGAACCATGTTGGCACTACTT 60.159 45.455 0.00 0.00 42.67 2.24
3113 3633 1.423541 TGGAACCATGTTGGCACTACT 59.576 47.619 0.00 0.00 42.67 2.57
3114 3634 1.904287 TGGAACCATGTTGGCACTAC 58.096 50.000 0.00 0.00 42.67 2.73
3115 3635 2.666272 TTGGAACCATGTTGGCACTA 57.334 45.000 0.00 0.00 42.67 2.74
3116 3636 1.786937 TTTGGAACCATGTTGGCACT 58.213 45.000 0.00 0.00 42.67 4.40
3117 3637 2.837532 ATTTGGAACCATGTTGGCAC 57.162 45.000 0.00 0.00 42.67 5.01
3118 3638 4.346418 ACTTTATTTGGAACCATGTTGGCA 59.654 37.500 0.00 0.00 42.67 4.92
3119 3639 4.893608 ACTTTATTTGGAACCATGTTGGC 58.106 39.130 0.00 0.00 42.67 4.52
3120 3640 7.090173 CACTACTTTATTTGGAACCATGTTGG 58.910 38.462 0.00 0.00 45.02 3.77
3121 3641 6.586082 GCACTACTTTATTTGGAACCATGTTG 59.414 38.462 0.00 0.00 0.00 3.33
3122 3642 6.295067 GGCACTACTTTATTTGGAACCATGTT 60.295 38.462 0.00 0.00 0.00 2.71
3123 3643 5.185056 GGCACTACTTTATTTGGAACCATGT 59.815 40.000 0.00 0.00 0.00 3.21
3124 3644 5.184864 TGGCACTACTTTATTTGGAACCATG 59.815 40.000 0.00 0.00 0.00 3.66
3125 3645 5.329399 TGGCACTACTTTATTTGGAACCAT 58.671 37.500 0.00 0.00 0.00 3.55
3126 3646 4.730966 TGGCACTACTTTATTTGGAACCA 58.269 39.130 0.00 0.00 0.00 3.67
3127 3647 5.010213 TGTTGGCACTACTTTATTTGGAACC 59.990 40.000 0.00 0.00 0.00 3.62
3128 3648 6.079424 TGTTGGCACTACTTTATTTGGAAC 57.921 37.500 0.00 0.00 0.00 3.62
3129 3649 6.295011 CCATGTTGGCACTACTTTATTTGGAA 60.295 38.462 0.00 0.00 0.00 3.53
3130 3650 5.184864 CCATGTTGGCACTACTTTATTTGGA 59.815 40.000 0.00 0.00 0.00 3.53
3131 3651 5.047377 ACCATGTTGGCACTACTTTATTTGG 60.047 40.000 0.00 0.00 42.67 3.28
3132 3652 6.024552 ACCATGTTGGCACTACTTTATTTG 57.975 37.500 0.00 0.00 42.67 2.32
3133 3653 6.295067 GGAACCATGTTGGCACTACTTTATTT 60.295 38.462 0.00 0.00 42.67 1.40
3134 3654 5.185056 GGAACCATGTTGGCACTACTTTATT 59.815 40.000 0.00 0.00 42.67 1.40
3135 3655 4.705023 GGAACCATGTTGGCACTACTTTAT 59.295 41.667 0.00 0.00 42.67 1.40
3136 3656 4.076394 GGAACCATGTTGGCACTACTTTA 58.924 43.478 0.00 0.00 42.67 1.85
3137 3657 2.890945 GGAACCATGTTGGCACTACTTT 59.109 45.455 0.00 0.00 42.67 2.66
3138 3658 2.158534 TGGAACCATGTTGGCACTACTT 60.159 45.455 0.00 0.00 42.67 2.24
3139 3659 1.423541 TGGAACCATGTTGGCACTACT 59.576 47.619 0.00 0.00 42.67 2.57
3140 3660 1.904287 TGGAACCATGTTGGCACTAC 58.096 50.000 0.00 0.00 42.67 2.73
3141 3661 2.666272 TTGGAACCATGTTGGCACTA 57.334 45.000 0.00 0.00 42.67 2.74
3142 3662 1.688197 CTTTGGAACCATGTTGGCACT 59.312 47.619 0.00 0.00 42.67 4.40
3143 3663 1.270252 CCTTTGGAACCATGTTGGCAC 60.270 52.381 0.00 0.00 42.67 5.01
3144 3664 1.047002 CCTTTGGAACCATGTTGGCA 58.953 50.000 0.00 0.00 42.67 4.92
3145 3665 1.000843 GACCTTTGGAACCATGTTGGC 59.999 52.381 0.00 0.00 42.67 4.52
3146 3666 2.558359 GAGACCTTTGGAACCATGTTGG 59.442 50.000 0.00 0.00 45.02 3.77
3147 3667 2.558359 GGAGACCTTTGGAACCATGTTG 59.442 50.000 0.00 0.00 0.00 3.33
3148 3668 2.176798 TGGAGACCTTTGGAACCATGTT 59.823 45.455 0.00 0.00 0.00 2.71
3149 3669 1.780309 TGGAGACCTTTGGAACCATGT 59.220 47.619 0.00 0.00 0.00 3.21
3150 3670 2.584835 TGGAGACCTTTGGAACCATG 57.415 50.000 0.00 0.00 0.00 3.66
3151 3671 3.611025 TTTGGAGACCTTTGGAACCAT 57.389 42.857 0.00 0.00 0.00 3.55
3152 3672 3.390175 TTTTGGAGACCTTTGGAACCA 57.610 42.857 0.00 0.00 0.00 3.67
3153 3673 4.955811 ATTTTTGGAGACCTTTGGAACC 57.044 40.909 0.00 0.00 0.00 3.62
3154 3674 9.990360 TTTATTATTTTTGGAGACCTTTGGAAC 57.010 29.630 0.00 0.00 0.00 3.62
3179 3699 3.193267 TGTGTGAGCTTTCTGTGCTTTTT 59.807 39.130 0.00 0.00 41.30 1.94
3180 3700 2.754552 TGTGTGAGCTTTCTGTGCTTTT 59.245 40.909 0.00 0.00 41.30 2.27
3181 3701 2.357009 CTGTGTGAGCTTTCTGTGCTTT 59.643 45.455 0.00 0.00 41.30 3.51
3182 3702 1.945394 CTGTGTGAGCTTTCTGTGCTT 59.055 47.619 0.00 0.00 41.30 3.91
3183 3703 1.590932 CTGTGTGAGCTTTCTGTGCT 58.409 50.000 0.00 0.00 44.24 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.