Multiple sequence alignment - TraesCS4A01G160100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G160100 chr4A 100.000 2924 0 0 1 2924 343909352 343906429 0.000000e+00 5400.0
1 TraesCS4A01G160100 chr4A 93.512 1233 70 7 2 1229 455908016 455906789 0.000000e+00 1825.0
2 TraesCS4A01G160100 chr4A 92.707 1234 82 7 2 1229 105509025 105510256 0.000000e+00 1773.0
3 TraesCS4A01G160100 chr1D 95.159 1322 58 5 1228 2544 267601751 267603071 0.000000e+00 2082.0
4 TraesCS4A01G160100 chr1D 92.863 1233 81 6 2 1229 408084845 408086075 0.000000e+00 1783.0
5 TraesCS4A01G160100 chr1D 92.863 1233 81 6 2 1229 477293429 477294659 0.000000e+00 1783.0
6 TraesCS4A01G160100 chr7D 95.180 1307 49 9 1229 2528 620585095 620586394 0.000000e+00 2052.0
7 TraesCS4A01G160100 chr2D 94.104 1340 54 8 1228 2544 166790306 166791643 0.000000e+00 2013.0
8 TraesCS4A01G160100 chr5A 93.350 1233 74 7 2 1229 641341380 641340151 0.000000e+00 1816.0
9 TraesCS4A01G160100 chr5A 92.776 1232 80 6 2 1229 641263807 641262581 0.000000e+00 1773.0
10 TraesCS4A01G160100 chr5A 91.080 852 58 9 1565 2414 479599642 479598807 0.000000e+00 1136.0
11 TraesCS4A01G160100 chr2A 93.182 1232 77 6 2 1229 555056148 555054920 0.000000e+00 1803.0
12 TraesCS4A01G160100 chr2A 93.031 1234 74 10 1 1229 148069588 148068362 0.000000e+00 1792.0
13 TraesCS4A01G160100 chr2A 92.261 827 40 4 1719 2544 618969215 618968412 0.000000e+00 1151.0
14 TraesCS4A01G160100 chr2A 85.714 259 19 10 1327 1584 618969531 618969290 1.040000e-64 257.0
15 TraesCS4A01G160100 chr2A 87.234 94 8 4 1228 1317 27352595 27352502 1.430000e-18 104.0
16 TraesCS4A01G160100 chr7A 92.776 1232 83 5 2 1229 487102222 487100993 0.000000e+00 1777.0
17 TraesCS4A01G160100 chr1B 94.280 944 45 4 1602 2544 493681703 493680768 0.000000e+00 1435.0
18 TraesCS4A01G160100 chr1B 93.538 944 45 7 1602 2544 8392069 8391141 0.000000e+00 1391.0
19 TraesCS4A01G160100 chr1B 87.927 439 46 4 1302 1740 591106508 591106077 7.230000e-141 510.0
20 TraesCS4A01G160100 chr5B 93.476 935 51 4 1602 2535 562438909 562439834 0.000000e+00 1380.0
21 TraesCS4A01G160100 chr5B 90.361 83 7 1 1228 1309 456328660 456328742 1.110000e-19 108.0
22 TraesCS4A01G160100 chr7B 85.928 1002 117 12 1555 2544 8908111 8909100 0.000000e+00 1048.0
23 TraesCS4A01G160100 chr7B 85.870 92 11 1 1228 1317 642088368 642088459 2.400000e-16 97.1
24 TraesCS4A01G160100 chr4D 91.228 513 33 6 1229 1739 483986174 483985672 0.000000e+00 688.0
25 TraesCS4A01G160100 chr4D 97.688 173 4 0 2372 2544 483984810 483984638 6.130000e-77 298.0
26 TraesCS4A01G160100 chr6B 97.632 380 8 1 2545 2924 615110517 615110895 0.000000e+00 651.0
27 TraesCS4A01G160100 chr3B 91.885 382 29 2 2545 2924 496906335 496906716 1.540000e-147 532.0
28 TraesCS4A01G160100 chr3D 87.097 93 9 2 1228 1317 597564549 597564457 5.160000e-18 102.0
29 TraesCS4A01G160100 chr4B 88.235 85 8 2 1229 1311 617880771 617880687 1.850000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G160100 chr4A 343906429 343909352 2923 True 5400 5400 100.0000 1 2924 1 chr4A.!!$R1 2923
1 TraesCS4A01G160100 chr4A 455906789 455908016 1227 True 1825 1825 93.5120 2 1229 1 chr4A.!!$R2 1227
2 TraesCS4A01G160100 chr4A 105509025 105510256 1231 False 1773 1773 92.7070 2 1229 1 chr4A.!!$F1 1227
3 TraesCS4A01G160100 chr1D 267601751 267603071 1320 False 2082 2082 95.1590 1228 2544 1 chr1D.!!$F1 1316
4 TraesCS4A01G160100 chr1D 408084845 408086075 1230 False 1783 1783 92.8630 2 1229 1 chr1D.!!$F2 1227
5 TraesCS4A01G160100 chr1D 477293429 477294659 1230 False 1783 1783 92.8630 2 1229 1 chr1D.!!$F3 1227
6 TraesCS4A01G160100 chr7D 620585095 620586394 1299 False 2052 2052 95.1800 1229 2528 1 chr7D.!!$F1 1299
7 TraesCS4A01G160100 chr2D 166790306 166791643 1337 False 2013 2013 94.1040 1228 2544 1 chr2D.!!$F1 1316
8 TraesCS4A01G160100 chr5A 641340151 641341380 1229 True 1816 1816 93.3500 2 1229 1 chr5A.!!$R3 1227
9 TraesCS4A01G160100 chr5A 641262581 641263807 1226 True 1773 1773 92.7760 2 1229 1 chr5A.!!$R2 1227
10 TraesCS4A01G160100 chr5A 479598807 479599642 835 True 1136 1136 91.0800 1565 2414 1 chr5A.!!$R1 849
11 TraesCS4A01G160100 chr2A 555054920 555056148 1228 True 1803 1803 93.1820 2 1229 1 chr2A.!!$R3 1227
12 TraesCS4A01G160100 chr2A 148068362 148069588 1226 True 1792 1792 93.0310 1 1229 1 chr2A.!!$R2 1228
13 TraesCS4A01G160100 chr2A 618968412 618969531 1119 True 704 1151 88.9875 1327 2544 2 chr2A.!!$R4 1217
14 TraesCS4A01G160100 chr7A 487100993 487102222 1229 True 1777 1777 92.7760 2 1229 1 chr7A.!!$R1 1227
15 TraesCS4A01G160100 chr1B 493680768 493681703 935 True 1435 1435 94.2800 1602 2544 1 chr1B.!!$R2 942
16 TraesCS4A01G160100 chr1B 8391141 8392069 928 True 1391 1391 93.5380 1602 2544 1 chr1B.!!$R1 942
17 TraesCS4A01G160100 chr5B 562438909 562439834 925 False 1380 1380 93.4760 1602 2535 1 chr5B.!!$F2 933
18 TraesCS4A01G160100 chr7B 8908111 8909100 989 False 1048 1048 85.9280 1555 2544 1 chr7B.!!$F1 989
19 TraesCS4A01G160100 chr4D 483984638 483986174 1536 True 493 688 94.4580 1229 2544 2 chr4D.!!$R1 1315

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
253 258 0.390603 CGTTGTCGGGGATGTTAGCA 60.391 55.0 0.00 0.00 0.0 3.49 F
817 825 0.451383 TTGATTTCCCTTGCGCATCG 59.549 50.0 12.75 5.44 0.0 3.84 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1290 1303 0.348370 AGGGAGGTGGGAGGATTGAT 59.652 55.0 0.0 0.0 0.0 2.57 R
2667 3319 0.179045 ACGTCCTGCCCATATGCTTC 60.179 55.0 0.0 0.0 0.0 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
117 122 2.421529 GCCTCCCACGGATTGATAAACT 60.422 50.000 0.00 0.00 0.00 2.66
178 183 2.600729 CCTCTGCACTTGGAGGCCT 61.601 63.158 3.86 3.86 41.92 5.19
229 234 8.244802 GTGTAGTAGACATCAAGCTCTTTTCTA 58.755 37.037 0.00 0.00 41.14 2.10
253 258 0.390603 CGTTGTCGGGGATGTTAGCA 60.391 55.000 0.00 0.00 0.00 3.49
442 449 9.745880 CAAAATGCTAGAAGAAGAATGCATTAT 57.254 29.630 12.97 6.27 46.17 1.28
551 559 8.735692 TGATTGCACTAGTCATGATGAAAATA 57.264 30.769 0.00 0.00 0.00 1.40
637 645 4.037327 GGAAGATAGATTTTGCAAGAGGCC 59.963 45.833 0.00 0.00 43.89 5.19
648 656 7.768807 TTTTGCAAGAGGCCTAAGTATTTAA 57.231 32.000 4.42 0.00 43.89 1.52
691 699 4.338879 AGGCTAGATGTTTGTGCTGAAAT 58.661 39.130 0.00 0.00 0.00 2.17
729 737 7.364149 AGCCATCCTTATGAAATTTGCAATA 57.636 32.000 0.00 0.00 34.84 1.90
775 783 7.360185 CCAATGCAAATTGTTTCATGATCGAAA 60.360 33.333 0.00 0.00 32.53 3.46
817 825 0.451383 TTGATTTCCCTTGCGCATCG 59.549 50.000 12.75 5.44 0.00 3.84
820 828 1.261619 GATTTCCCTTGCGCATCGTAG 59.738 52.381 12.75 5.15 0.00 3.51
825 833 1.290203 CCTTGCGCATCGTAGTGAAT 58.710 50.000 12.75 0.00 0.00 2.57
865 873 9.931210 GGGTTATGAAGAAATGAAACGTATAAG 57.069 33.333 0.00 0.00 0.00 1.73
888 896 8.829373 AAGTAAGGATATTTCAGAATTTGCCT 57.171 30.769 0.00 0.00 0.00 4.75
1042 1050 8.776119 TGAAAGAGAAGAGATTTCCCAATATCT 58.224 33.333 0.00 0.00 41.82 1.98
1044 1052 9.987726 AAAGAGAAGAGATTTCCCAATATCTTT 57.012 29.630 6.35 0.00 46.46 2.52
1197 1208 5.315109 ACAAAGGTAAAAAGGTATCCCTCCT 59.685 40.000 0.00 0.00 41.56 3.69
1263 1274 5.661056 TGGACGAGTTGATGAATAGTCTT 57.339 39.130 0.00 0.00 0.00 3.01
1282 1293 5.298276 AGTCTTCACGGTTTATTTTTGCTGA 59.702 36.000 0.00 0.00 0.00 4.26
1311 1326 0.621571 CAATCCTCCCACCTCCCTCA 60.622 60.000 0.00 0.00 0.00 3.86
1325 1340 1.961277 CCTCACACCCAAGCACGAC 60.961 63.158 0.00 0.00 0.00 4.34
1399 1418 0.609957 ATACGACGACCCCTCACACA 60.610 55.000 0.00 0.00 0.00 3.72
1499 1540 4.200283 CTCTCTCTCCGCGCACCC 62.200 72.222 8.75 0.00 0.00 4.61
1550 1591 1.243342 CCTTTTCAGCGCCCACATCA 61.243 55.000 2.29 0.00 0.00 3.07
1562 1603 1.371183 CACATCACGACCCCTGTGT 59.629 57.895 0.00 0.00 38.48 3.72
1596 1637 0.968901 AGGCGTCATGGAGGTTACGA 60.969 55.000 6.56 0.00 37.53 3.43
1600 1641 2.676342 GCGTCATGGAGGTTACGAAAAT 59.324 45.455 6.56 0.00 37.53 1.82
1639 1680 2.234908 CCGGAGATGAAGAAGACAACCT 59.765 50.000 0.00 0.00 0.00 3.50
1896 1943 0.178970 ACACAGACGTACCTGACCCT 60.179 55.000 10.93 0.00 37.59 4.34
1905 1952 2.353406 CGTACCTGACCCTTCGTTGAAT 60.353 50.000 0.00 0.00 0.00 2.57
1911 1958 2.301870 TGACCCTTCGTTGAATAGCAGT 59.698 45.455 0.00 0.00 0.00 4.40
2577 3229 9.122613 GATTTCAATCTCAAAAGTAAGAACTGC 57.877 33.333 0.00 0.00 32.51 4.40
2578 3230 7.566760 TTCAATCTCAAAAGTAAGAACTGCA 57.433 32.000 0.00 0.00 35.62 4.41
2579 3231 7.750229 TCAATCTCAAAAGTAAGAACTGCAT 57.250 32.000 0.00 0.00 35.62 3.96
2580 3232 7.587629 TCAATCTCAAAAGTAAGAACTGCATG 58.412 34.615 0.00 0.00 35.62 4.06
2581 3233 7.229306 TCAATCTCAAAAGTAAGAACTGCATGT 59.771 33.333 0.00 0.00 35.62 3.21
2582 3234 6.304356 TCTCAAAAGTAAGAACTGCATGTG 57.696 37.500 0.00 0.00 35.62 3.21
2583 3235 6.054941 TCTCAAAAGTAAGAACTGCATGTGA 58.945 36.000 0.00 0.00 35.62 3.58
2584 3236 6.712095 TCTCAAAAGTAAGAACTGCATGTGAT 59.288 34.615 0.00 0.00 35.62 3.06
2585 3237 6.671190 TCAAAAGTAAGAACTGCATGTGATG 58.329 36.000 0.00 0.00 35.62 3.07
2601 3253 7.198306 CATGTGATGCAATTATAGCAAGAGA 57.802 36.000 0.00 0.00 46.27 3.10
2602 3254 7.817641 CATGTGATGCAATTATAGCAAGAGAT 58.182 34.615 0.00 0.00 46.27 2.75
2603 3255 7.812690 TGTGATGCAATTATAGCAAGAGATT 57.187 32.000 0.00 0.00 46.27 2.40
2604 3256 8.907222 TGTGATGCAATTATAGCAAGAGATTA 57.093 30.769 0.00 0.00 46.27 1.75
2605 3257 8.996271 TGTGATGCAATTATAGCAAGAGATTAG 58.004 33.333 0.00 0.00 46.27 1.73
2606 3258 9.212641 GTGATGCAATTATAGCAAGAGATTAGA 57.787 33.333 0.00 0.00 46.27 2.10
2607 3259 9.955102 TGATGCAATTATAGCAAGAGATTAGAT 57.045 29.630 0.00 0.00 46.27 1.98
2609 3261 9.955102 ATGCAATTATAGCAAGAGATTAGATCA 57.045 29.630 0.00 0.00 46.27 2.92
2610 3262 9.433153 TGCAATTATAGCAAGAGATTAGATCAG 57.567 33.333 0.00 0.00 39.39 2.90
2611 3263 8.389603 GCAATTATAGCAAGAGATTAGATCAGC 58.610 37.037 0.00 0.00 0.00 4.26
2612 3264 9.656040 CAATTATAGCAAGAGATTAGATCAGCT 57.344 33.333 0.00 0.00 35.06 4.24
2615 3267 9.746457 TTATAGCAAGAGATTAGATCAGCTAGA 57.254 33.333 0.00 0.00 36.86 2.43
2616 3268 6.331369 AGCAAGAGATTAGATCAGCTAGAC 57.669 41.667 0.00 0.00 0.00 2.59
2617 3269 5.832595 AGCAAGAGATTAGATCAGCTAGACA 59.167 40.000 0.00 0.00 0.00 3.41
2618 3270 6.494491 AGCAAGAGATTAGATCAGCTAGACAT 59.506 38.462 0.00 0.00 0.00 3.06
2619 3271 7.669304 AGCAAGAGATTAGATCAGCTAGACATA 59.331 37.037 0.00 0.00 0.00 2.29
2620 3272 7.754924 GCAAGAGATTAGATCAGCTAGACATAC 59.245 40.741 0.00 0.00 0.00 2.39
2621 3273 8.791675 CAAGAGATTAGATCAGCTAGACATACA 58.208 37.037 0.00 0.00 0.00 2.29
2622 3274 8.335532 AGAGATTAGATCAGCTAGACATACAC 57.664 38.462 0.00 0.00 0.00 2.90
2623 3275 7.941790 AGAGATTAGATCAGCTAGACATACACA 59.058 37.037 0.00 0.00 0.00 3.72
2624 3276 7.881142 AGATTAGATCAGCTAGACATACACAC 58.119 38.462 0.00 0.00 0.00 3.82
2625 3277 4.560136 AGATCAGCTAGACATACACACG 57.440 45.455 0.00 0.00 0.00 4.49
2626 3278 2.561733 TCAGCTAGACATACACACGC 57.438 50.000 0.00 0.00 0.00 5.34
2627 3279 1.816224 TCAGCTAGACATACACACGCA 59.184 47.619 0.00 0.00 0.00 5.24
2628 3280 2.427095 TCAGCTAGACATACACACGCAT 59.573 45.455 0.00 0.00 0.00 4.73
2629 3281 2.791560 CAGCTAGACATACACACGCATC 59.208 50.000 0.00 0.00 0.00 3.91
2630 3282 2.690497 AGCTAGACATACACACGCATCT 59.310 45.455 0.00 0.00 0.00 2.90
2631 3283 3.131223 AGCTAGACATACACACGCATCTT 59.869 43.478 0.00 0.00 0.00 2.40
2632 3284 3.487574 GCTAGACATACACACGCATCTTC 59.512 47.826 0.00 0.00 0.00 2.87
2633 3285 3.876274 AGACATACACACGCATCTTCT 57.124 42.857 0.00 0.00 0.00 2.85
2634 3286 4.983671 AGACATACACACGCATCTTCTA 57.016 40.909 0.00 0.00 0.00 2.10
2635 3287 5.324784 AGACATACACACGCATCTTCTAA 57.675 39.130 0.00 0.00 0.00 2.10
2636 3288 5.907207 AGACATACACACGCATCTTCTAAT 58.093 37.500 0.00 0.00 0.00 1.73
2637 3289 5.750547 AGACATACACACGCATCTTCTAATG 59.249 40.000 0.00 0.00 0.00 1.90
2638 3290 4.271049 ACATACACACGCATCTTCTAATGC 59.729 41.667 0.00 0.00 46.86 3.56
2647 3299 3.877559 CATCTTCTAATGCACCAGTGGA 58.122 45.455 18.40 0.00 34.81 4.02
2648 3300 3.616956 TCTTCTAATGCACCAGTGGAG 57.383 47.619 18.40 9.68 33.50 3.86
2649 3301 2.906389 TCTTCTAATGCACCAGTGGAGT 59.094 45.455 18.40 0.00 33.50 3.85
2650 3302 4.093743 TCTTCTAATGCACCAGTGGAGTA 58.906 43.478 18.40 8.26 33.50 2.59
2651 3303 4.716784 TCTTCTAATGCACCAGTGGAGTAT 59.283 41.667 18.40 10.64 31.58 2.12
2652 3304 5.189736 TCTTCTAATGCACCAGTGGAGTATT 59.810 40.000 22.40 22.40 33.97 1.89
2653 3305 4.769688 TCTAATGCACCAGTGGAGTATTG 58.230 43.478 25.65 17.59 32.24 1.90
2654 3306 3.439857 AATGCACCAGTGGAGTATTGT 57.560 42.857 19.26 0.00 33.50 2.71
2655 3307 2.949177 TGCACCAGTGGAGTATTGTT 57.051 45.000 18.40 0.00 0.00 2.83
2656 3308 2.778299 TGCACCAGTGGAGTATTGTTC 58.222 47.619 18.40 0.00 0.00 3.18
2657 3309 2.371841 TGCACCAGTGGAGTATTGTTCT 59.628 45.455 18.40 0.00 0.00 3.01
2658 3310 3.003480 GCACCAGTGGAGTATTGTTCTC 58.997 50.000 18.40 0.00 0.00 2.87
2672 3324 8.579850 AGTATTGTTCTCCATAATTTGAAGCA 57.420 30.769 0.00 0.00 0.00 3.91
2673 3325 9.193806 AGTATTGTTCTCCATAATTTGAAGCAT 57.806 29.630 0.00 0.00 0.00 3.79
2676 3328 9.976511 ATTGTTCTCCATAATTTGAAGCATATG 57.023 29.630 0.00 0.00 0.00 1.78
2677 3329 7.944061 TGTTCTCCATAATTTGAAGCATATGG 58.056 34.615 4.56 4.63 43.97 2.74
2678 3330 7.014518 TGTTCTCCATAATTTGAAGCATATGGG 59.985 37.037 4.56 3.05 43.20 4.00
2679 3331 5.477984 TCTCCATAATTTGAAGCATATGGGC 59.522 40.000 4.56 0.00 43.20 5.36
2680 3332 5.146298 TCCATAATTTGAAGCATATGGGCA 58.854 37.500 4.56 0.00 43.20 5.36
2681 3333 5.244402 TCCATAATTTGAAGCATATGGGCAG 59.756 40.000 4.56 0.00 43.20 4.85
2682 3334 5.475719 CATAATTTGAAGCATATGGGCAGG 58.524 41.667 4.56 0.00 35.83 4.85
2683 3335 2.824689 TTTGAAGCATATGGGCAGGA 57.175 45.000 4.56 0.00 35.83 3.86
2684 3336 2.057137 TTGAAGCATATGGGCAGGAC 57.943 50.000 4.56 0.00 35.83 3.85
2685 3337 0.179048 TGAAGCATATGGGCAGGACG 60.179 55.000 4.56 0.00 35.83 4.79
2686 3338 0.179045 GAAGCATATGGGCAGGACGT 60.179 55.000 4.56 0.00 35.83 4.34
2687 3339 0.179045 AAGCATATGGGCAGGACGTC 60.179 55.000 7.13 7.13 35.83 4.34
2688 3340 1.956170 GCATATGGGCAGGACGTCG 60.956 63.158 9.92 0.00 0.00 5.12
2689 3341 1.739667 CATATGGGCAGGACGTCGA 59.260 57.895 9.92 0.00 0.00 4.20
2690 3342 0.318441 CATATGGGCAGGACGTCGAT 59.682 55.000 9.92 0.00 0.00 3.59
2691 3343 0.318441 ATATGGGCAGGACGTCGATG 59.682 55.000 9.92 11.99 0.00 3.84
2692 3344 1.744320 TATGGGCAGGACGTCGATGG 61.744 60.000 17.84 5.92 0.00 3.51
2694 3346 4.148825 GGCAGGACGTCGATGGCT 62.149 66.667 27.80 11.13 36.63 4.75
2695 3347 2.125512 GCAGGACGTCGATGGCTT 60.126 61.111 11.00 0.00 0.00 4.35
2696 3348 2.167861 GCAGGACGTCGATGGCTTC 61.168 63.158 11.00 0.00 0.00 3.86
2704 3356 2.202851 CGATGGCTTCGCTGCTCT 60.203 61.111 9.93 0.00 41.69 4.09
2705 3357 1.066422 CGATGGCTTCGCTGCTCTA 59.934 57.895 9.93 0.00 41.69 2.43
2706 3358 0.938637 CGATGGCTTCGCTGCTCTAG 60.939 60.000 9.93 0.00 41.69 2.43
2707 3359 0.387202 GATGGCTTCGCTGCTCTAGA 59.613 55.000 0.00 0.00 0.00 2.43
2708 3360 0.103937 ATGGCTTCGCTGCTCTAGAC 59.896 55.000 0.00 0.00 0.00 2.59
2709 3361 1.227118 GGCTTCGCTGCTCTAGACC 60.227 63.158 0.00 0.00 0.00 3.85
2710 3362 1.513158 GCTTCGCTGCTCTAGACCA 59.487 57.895 0.00 0.00 0.00 4.02
2711 3363 0.804156 GCTTCGCTGCTCTAGACCAC 60.804 60.000 0.00 0.00 0.00 4.16
2712 3364 0.528017 CTTCGCTGCTCTAGACCACA 59.472 55.000 0.00 0.00 0.00 4.17
2713 3365 0.966179 TTCGCTGCTCTAGACCACAA 59.034 50.000 0.00 0.00 0.00 3.33
2714 3366 1.186200 TCGCTGCTCTAGACCACAAT 58.814 50.000 0.00 0.00 0.00 2.71
2715 3367 1.134995 TCGCTGCTCTAGACCACAATG 60.135 52.381 0.00 0.00 0.00 2.82
2716 3368 1.134995 CGCTGCTCTAGACCACAATGA 60.135 52.381 0.00 0.00 0.00 2.57
2717 3369 2.482664 CGCTGCTCTAGACCACAATGAT 60.483 50.000 0.00 0.00 0.00 2.45
2718 3370 2.871022 GCTGCTCTAGACCACAATGATG 59.129 50.000 0.00 0.00 0.00 3.07
2719 3371 3.431346 GCTGCTCTAGACCACAATGATGA 60.431 47.826 0.00 0.00 0.00 2.92
2720 3372 4.763073 CTGCTCTAGACCACAATGATGAA 58.237 43.478 0.00 0.00 0.00 2.57
2721 3373 4.507710 TGCTCTAGACCACAATGATGAAC 58.492 43.478 0.00 0.00 0.00 3.18
2722 3374 4.020307 TGCTCTAGACCACAATGATGAACA 60.020 41.667 0.00 0.00 0.00 3.18
2723 3375 4.937620 GCTCTAGACCACAATGATGAACAA 59.062 41.667 0.00 0.00 0.00 2.83
2724 3376 5.587844 GCTCTAGACCACAATGATGAACAAT 59.412 40.000 0.00 0.00 0.00 2.71
2725 3377 6.457934 GCTCTAGACCACAATGATGAACAATG 60.458 42.308 0.00 0.00 35.71 2.82
2726 3378 6.710278 TCTAGACCACAATGATGAACAATGA 58.290 36.000 0.00 0.00 33.96 2.57
2727 3379 7.167535 TCTAGACCACAATGATGAACAATGAA 58.832 34.615 0.00 0.00 33.96 2.57
2728 3380 6.653526 AGACCACAATGATGAACAATGAAA 57.346 33.333 0.00 0.00 33.96 2.69
2729 3381 6.449698 AGACCACAATGATGAACAATGAAAC 58.550 36.000 0.00 0.00 33.96 2.78
2730 3382 6.266103 AGACCACAATGATGAACAATGAAACT 59.734 34.615 0.00 0.00 33.96 2.66
2731 3383 6.449698 ACCACAATGATGAACAATGAAACTC 58.550 36.000 0.00 0.00 33.96 3.01
2732 3384 5.570206 CCACAATGATGAACAATGAAACTCG 59.430 40.000 0.00 0.00 33.96 4.18
2733 3385 6.144854 CACAATGATGAACAATGAAACTCGT 58.855 36.000 0.00 0.00 33.96 4.18
2734 3386 7.297391 CACAATGATGAACAATGAAACTCGTA 58.703 34.615 0.00 0.00 33.96 3.43
2735 3387 7.479603 CACAATGATGAACAATGAAACTCGTAG 59.520 37.037 0.00 0.00 33.96 3.51
2736 3388 7.387673 ACAATGATGAACAATGAAACTCGTAGA 59.612 33.333 0.00 0.00 33.96 2.59
2737 3389 6.706055 TGATGAACAATGAAACTCGTAGAC 57.294 37.500 0.00 0.00 0.00 2.59
2738 3390 5.637810 TGATGAACAATGAAACTCGTAGACC 59.362 40.000 0.00 0.00 0.00 3.85
2739 3391 4.312443 TGAACAATGAAACTCGTAGACCC 58.688 43.478 0.00 0.00 0.00 4.46
2740 3392 4.039973 TGAACAATGAAACTCGTAGACCCT 59.960 41.667 0.00 0.00 0.00 4.34
2741 3393 4.618920 ACAATGAAACTCGTAGACCCTT 57.381 40.909 0.00 0.00 0.00 3.95
2742 3394 4.969484 ACAATGAAACTCGTAGACCCTTT 58.031 39.130 0.00 0.00 0.00 3.11
2743 3395 5.374071 ACAATGAAACTCGTAGACCCTTTT 58.626 37.500 0.00 0.00 0.00 2.27
2744 3396 5.826208 ACAATGAAACTCGTAGACCCTTTTT 59.174 36.000 0.00 0.00 0.00 1.94
2745 3397 5.941948 ATGAAACTCGTAGACCCTTTTTG 57.058 39.130 0.00 0.00 0.00 2.44
2746 3398 4.773013 TGAAACTCGTAGACCCTTTTTGT 58.227 39.130 0.00 0.00 0.00 2.83
2747 3399 4.812626 TGAAACTCGTAGACCCTTTTTGTC 59.187 41.667 0.00 0.00 0.00 3.18
2748 3400 4.411256 AACTCGTAGACCCTTTTTGTCA 57.589 40.909 0.00 0.00 35.15 3.58
2749 3401 3.725490 ACTCGTAGACCCTTTTTGTCAC 58.275 45.455 0.00 0.00 35.15 3.67
2750 3402 3.133362 ACTCGTAGACCCTTTTTGTCACA 59.867 43.478 0.00 0.00 35.15 3.58
2751 3403 3.724374 TCGTAGACCCTTTTTGTCACAG 58.276 45.455 0.00 0.00 35.15 3.66
2752 3404 3.133362 TCGTAGACCCTTTTTGTCACAGT 59.867 43.478 0.00 0.00 35.15 3.55
2753 3405 3.875134 CGTAGACCCTTTTTGTCACAGTT 59.125 43.478 0.00 0.00 35.15 3.16
2754 3406 4.334481 CGTAGACCCTTTTTGTCACAGTTT 59.666 41.667 0.00 0.00 35.15 2.66
2755 3407 4.718940 AGACCCTTTTTGTCACAGTTTG 57.281 40.909 0.00 0.00 35.15 2.93
2756 3408 3.447229 AGACCCTTTTTGTCACAGTTTGG 59.553 43.478 0.00 0.00 35.15 3.28
2757 3409 3.169908 ACCCTTTTTGTCACAGTTTGGT 58.830 40.909 0.00 0.00 0.00 3.67
2758 3410 3.056179 ACCCTTTTTGTCACAGTTTGGTG 60.056 43.478 0.00 0.00 40.16 4.17
2759 3411 3.520569 CCTTTTTGTCACAGTTTGGTGG 58.479 45.455 0.00 0.00 39.27 4.61
2760 3412 3.194542 CCTTTTTGTCACAGTTTGGTGGA 59.805 43.478 0.00 0.00 39.27 4.02
2761 3413 4.141959 CCTTTTTGTCACAGTTTGGTGGAT 60.142 41.667 0.00 0.00 39.27 3.41
2762 3414 4.383850 TTTTGTCACAGTTTGGTGGATG 57.616 40.909 0.00 0.00 39.27 3.51
2763 3415 1.979855 TGTCACAGTTTGGTGGATGG 58.020 50.000 0.00 0.00 39.27 3.51
2764 3416 0.598065 GTCACAGTTTGGTGGATGGC 59.402 55.000 0.00 0.00 39.27 4.40
2765 3417 0.539438 TCACAGTTTGGTGGATGGCC 60.539 55.000 0.00 0.00 39.27 5.36
2766 3418 1.603455 ACAGTTTGGTGGATGGCCG 60.603 57.895 0.00 0.00 36.79 6.13
2767 3419 2.035626 AGTTTGGTGGATGGCCGG 59.964 61.111 0.00 0.00 36.79 6.13
2768 3420 3.758931 GTTTGGTGGATGGCCGGC 61.759 66.667 21.18 21.18 36.79 6.13
2784 3436 4.084888 GCGGCGTTCCTTTCGGTG 62.085 66.667 9.37 0.00 0.00 4.94
2785 3437 3.419759 CGGCGTTCCTTTCGGTGG 61.420 66.667 0.00 0.00 0.00 4.61
2786 3438 3.733960 GGCGTTCCTTTCGGTGGC 61.734 66.667 0.00 0.00 0.00 5.01
2787 3439 2.975799 GCGTTCCTTTCGGTGGCA 60.976 61.111 0.00 0.00 0.00 4.92
2788 3440 2.548295 GCGTTCCTTTCGGTGGCAA 61.548 57.895 0.00 0.00 0.00 4.52
2789 3441 2.026522 CGTTCCTTTCGGTGGCAAA 58.973 52.632 0.00 0.00 0.00 3.68
2790 3442 0.596082 CGTTCCTTTCGGTGGCAAAT 59.404 50.000 0.00 0.00 0.00 2.32
2791 3443 1.807742 CGTTCCTTTCGGTGGCAAATA 59.192 47.619 0.00 0.00 0.00 1.40
2792 3444 2.226912 CGTTCCTTTCGGTGGCAAATAA 59.773 45.455 0.00 0.00 0.00 1.40
2793 3445 3.571571 GTTCCTTTCGGTGGCAAATAAC 58.428 45.455 0.00 0.00 0.00 1.89
2794 3446 3.149005 TCCTTTCGGTGGCAAATAACT 57.851 42.857 0.00 0.00 0.00 2.24
2795 3447 4.289238 TCCTTTCGGTGGCAAATAACTA 57.711 40.909 0.00 0.00 0.00 2.24
2796 3448 4.653868 TCCTTTCGGTGGCAAATAACTAA 58.346 39.130 0.00 0.00 0.00 2.24
2797 3449 5.071370 TCCTTTCGGTGGCAAATAACTAAA 58.929 37.500 0.00 0.00 0.00 1.85
2798 3450 5.712917 TCCTTTCGGTGGCAAATAACTAAAT 59.287 36.000 0.00 0.00 0.00 1.40
2799 3451 6.209788 TCCTTTCGGTGGCAAATAACTAAATT 59.790 34.615 0.00 0.00 0.00 1.82
2800 3452 6.871492 CCTTTCGGTGGCAAATAACTAAATTT 59.129 34.615 0.00 0.00 0.00 1.82
2801 3453 8.030106 CCTTTCGGTGGCAAATAACTAAATTTA 58.970 33.333 0.00 0.00 0.00 1.40
2802 3454 9.581099 CTTTCGGTGGCAAATAACTAAATTTAT 57.419 29.630 0.00 0.00 0.00 1.40
2803 3455 9.930693 TTTCGGTGGCAAATAACTAAATTTATT 57.069 25.926 0.00 0.00 33.84 1.40
2804 3456 9.930693 TTCGGTGGCAAATAACTAAATTTATTT 57.069 25.926 6.13 6.13 40.67 1.40
2805 3457 9.930693 TCGGTGGCAAATAACTAAATTTATTTT 57.069 25.926 6.17 2.63 38.87 1.82
2806 3458 9.965748 CGGTGGCAAATAACTAAATTTATTTTG 57.034 29.630 6.17 10.60 38.87 2.44
2808 3460 9.767684 GTGGCAAATAACTAAATTTATTTTGGC 57.232 29.630 24.08 24.08 38.87 4.52
2809 3461 9.507329 TGGCAAATAACTAAATTTATTTTGGCA 57.493 25.926 26.55 26.55 38.87 4.92
2810 3462 9.986833 GGCAAATAACTAAATTTATTTTGGCAG 57.013 29.630 24.88 9.98 38.87 4.85
2811 3463 9.489393 GCAAATAACTAAATTTATTTTGGCAGC 57.511 29.630 6.17 2.79 38.87 5.25
2815 3467 9.889128 ATAACTAAATTTATTTTGGCAGCATGT 57.111 25.926 6.17 0.00 39.31 3.21
2816 3468 8.620116 AACTAAATTTATTTTGGCAGCATGTT 57.380 26.923 0.00 0.00 39.31 2.71
2817 3469 9.717942 AACTAAATTTATTTTGGCAGCATGTTA 57.282 25.926 0.00 0.00 39.31 2.41
2818 3470 9.369904 ACTAAATTTATTTTGGCAGCATGTTAG 57.630 29.630 0.00 0.00 39.31 2.34
2819 3471 9.585099 CTAAATTTATTTTGGCAGCATGTTAGA 57.415 29.630 0.00 0.00 39.31 2.10
2820 3472 8.483307 AAATTTATTTTGGCAGCATGTTAGAG 57.517 30.769 0.00 0.00 39.31 2.43
2821 3473 5.581126 TTATTTTGGCAGCATGTTAGAGG 57.419 39.130 0.00 0.00 39.31 3.69
2822 3474 1.838112 TTTGGCAGCATGTTAGAGGG 58.162 50.000 0.00 0.00 39.31 4.30
2823 3475 0.991146 TTGGCAGCATGTTAGAGGGA 59.009 50.000 0.00 0.00 39.31 4.20
2824 3476 0.543277 TGGCAGCATGTTAGAGGGAG 59.457 55.000 0.00 0.00 39.31 4.30
2825 3477 0.833287 GGCAGCATGTTAGAGGGAGA 59.167 55.000 0.00 0.00 39.31 3.71
2826 3478 1.202627 GGCAGCATGTTAGAGGGAGAG 60.203 57.143 0.00 0.00 39.31 3.20
2827 3479 1.202627 GCAGCATGTTAGAGGGAGAGG 60.203 57.143 0.00 0.00 39.31 3.69
2828 3480 2.392662 CAGCATGTTAGAGGGAGAGGA 58.607 52.381 0.00 0.00 0.00 3.71
2829 3481 2.971330 CAGCATGTTAGAGGGAGAGGAT 59.029 50.000 0.00 0.00 0.00 3.24
2830 3482 2.971330 AGCATGTTAGAGGGAGAGGATG 59.029 50.000 0.00 0.00 0.00 3.51
2831 3483 2.038295 GCATGTTAGAGGGAGAGGATGG 59.962 54.545 0.00 0.00 0.00 3.51
2832 3484 3.312890 CATGTTAGAGGGAGAGGATGGT 58.687 50.000 0.00 0.00 0.00 3.55
2833 3485 3.491766 TGTTAGAGGGAGAGGATGGTT 57.508 47.619 0.00 0.00 0.00 3.67
2834 3486 3.803340 TGTTAGAGGGAGAGGATGGTTT 58.197 45.455 0.00 0.00 0.00 3.27
2835 3487 4.955335 TGTTAGAGGGAGAGGATGGTTTA 58.045 43.478 0.00 0.00 0.00 2.01
2836 3488 5.538877 TGTTAGAGGGAGAGGATGGTTTAT 58.461 41.667 0.00 0.00 0.00 1.40
2837 3489 5.602978 TGTTAGAGGGAGAGGATGGTTTATC 59.397 44.000 0.00 0.00 34.93 1.75
2850 3502 6.927294 GATGGTTTATCCTCTAGTTTGGTG 57.073 41.667 0.00 0.00 37.07 4.17
2851 3503 4.585879 TGGTTTATCCTCTAGTTTGGTGC 58.414 43.478 0.00 0.00 37.07 5.01
2852 3504 3.621715 GGTTTATCCTCTAGTTTGGTGCG 59.378 47.826 0.00 0.00 0.00 5.34
2853 3505 4.501071 GTTTATCCTCTAGTTTGGTGCGA 58.499 43.478 0.00 0.00 0.00 5.10
2854 3506 2.674796 ATCCTCTAGTTTGGTGCGAC 57.325 50.000 0.00 0.00 0.00 5.19
2855 3507 0.606604 TCCTCTAGTTTGGTGCGACC 59.393 55.000 0.00 0.00 39.22 4.79
2856 3508 0.608640 CCTCTAGTTTGGTGCGACCT 59.391 55.000 6.83 0.00 39.58 3.85
2857 3509 1.673033 CCTCTAGTTTGGTGCGACCTG 60.673 57.143 6.83 0.00 39.58 4.00
2858 3510 1.272490 CTCTAGTTTGGTGCGACCTGA 59.728 52.381 6.83 0.00 39.58 3.86
2859 3511 1.689813 TCTAGTTTGGTGCGACCTGAA 59.310 47.619 6.83 0.62 39.58 3.02
2860 3512 2.103432 TCTAGTTTGGTGCGACCTGAAA 59.897 45.455 6.83 0.00 39.58 2.69
2861 3513 1.021968 AGTTTGGTGCGACCTGAAAC 58.978 50.000 6.83 9.00 39.58 2.78
2862 3514 0.736053 GTTTGGTGCGACCTGAAACA 59.264 50.000 12.33 0.00 39.58 2.83
2863 3515 1.336755 GTTTGGTGCGACCTGAAACAT 59.663 47.619 12.33 0.00 39.58 2.71
2864 3516 2.550606 GTTTGGTGCGACCTGAAACATA 59.449 45.455 12.33 0.00 39.58 2.29
2865 3517 2.093306 TGGTGCGACCTGAAACATAG 57.907 50.000 6.83 0.00 39.58 2.23
2866 3518 1.338674 TGGTGCGACCTGAAACATAGG 60.339 52.381 6.83 0.00 39.58 2.57
2867 3519 1.369625 GTGCGACCTGAAACATAGGG 58.630 55.000 0.00 0.00 39.71 3.53
2868 3520 0.392461 TGCGACCTGAAACATAGGGC 60.392 55.000 0.00 0.00 40.13 5.19
2869 3521 0.392461 GCGACCTGAAACATAGGGCA 60.392 55.000 0.00 0.00 43.96 5.36
2870 3522 1.747206 GCGACCTGAAACATAGGGCAT 60.747 52.381 0.00 0.00 43.96 4.40
2871 3523 2.484770 GCGACCTGAAACATAGGGCATA 60.485 50.000 0.00 0.00 43.96 3.14
2872 3524 3.807209 GCGACCTGAAACATAGGGCATAT 60.807 47.826 0.00 0.00 43.96 1.78
2873 3525 4.562757 GCGACCTGAAACATAGGGCATATA 60.563 45.833 0.00 0.00 43.96 0.86
2874 3526 5.171476 CGACCTGAAACATAGGGCATATAG 58.829 45.833 0.00 0.00 43.96 1.31
2875 3527 5.279506 CGACCTGAAACATAGGGCATATAGT 60.280 44.000 0.00 0.00 43.96 2.12
2876 3528 6.515512 ACCTGAAACATAGGGCATATAGTT 57.484 37.500 0.00 0.00 39.71 2.24
2877 3529 7.524863 CGACCTGAAACATAGGGCATATAGTTA 60.525 40.741 0.00 0.00 43.96 2.24
2878 3530 8.041143 ACCTGAAACATAGGGCATATAGTTAA 57.959 34.615 7.18 1.37 39.71 2.01
2879 3531 8.157476 ACCTGAAACATAGGGCATATAGTTAAG 58.843 37.037 7.18 7.91 39.71 1.85
2880 3532 8.375506 CCTGAAACATAGGGCATATAGTTAAGA 58.624 37.037 7.18 0.00 0.00 2.10
2881 3533 9.950496 CTGAAACATAGGGCATATAGTTAAGAT 57.050 33.333 7.18 0.00 0.00 2.40
2882 3534 9.944376 TGAAACATAGGGCATATAGTTAAGATC 57.056 33.333 7.18 0.00 0.00 2.75
2883 3535 9.384764 GAAACATAGGGCATATAGTTAAGATCC 57.615 37.037 7.18 0.00 0.00 3.36
2884 3536 8.449423 AACATAGGGCATATAGTTAAGATCCA 57.551 34.615 0.00 0.00 0.00 3.41
2885 3537 8.449423 ACATAGGGCATATAGTTAAGATCCAA 57.551 34.615 0.00 0.00 0.00 3.53
2886 3538 8.890472 ACATAGGGCATATAGTTAAGATCCAAA 58.110 33.333 0.00 0.00 0.00 3.28
2887 3539 9.167311 CATAGGGCATATAGTTAAGATCCAAAC 57.833 37.037 0.00 0.00 0.00 2.93
2888 3540 6.231211 AGGGCATATAGTTAAGATCCAAACG 58.769 40.000 0.00 0.00 0.00 3.60
2889 3541 5.411669 GGGCATATAGTTAAGATCCAAACGG 59.588 44.000 0.00 0.00 0.00 4.44
2890 3542 5.411669 GGCATATAGTTAAGATCCAAACGGG 59.588 44.000 0.00 0.00 38.37 5.28
2891 3543 5.106673 GCATATAGTTAAGATCCAAACGGGC 60.107 44.000 0.00 0.00 36.21 6.13
2892 3544 2.871096 AGTTAAGATCCAAACGGGCA 57.129 45.000 0.00 0.00 36.21 5.36
2893 3545 2.711542 AGTTAAGATCCAAACGGGCAG 58.288 47.619 0.00 0.00 36.21 4.85
2894 3546 2.304761 AGTTAAGATCCAAACGGGCAGA 59.695 45.455 0.00 0.00 36.21 4.26
2895 3547 3.078837 GTTAAGATCCAAACGGGCAGAA 58.921 45.455 0.00 0.00 36.21 3.02
2896 3548 2.286365 AAGATCCAAACGGGCAGAAA 57.714 45.000 0.00 0.00 36.21 2.52
2897 3549 1.826385 AGATCCAAACGGGCAGAAAG 58.174 50.000 0.00 0.00 36.21 2.62
2898 3550 1.073923 AGATCCAAACGGGCAGAAAGT 59.926 47.619 0.00 0.00 36.21 2.66
2899 3551 2.304761 AGATCCAAACGGGCAGAAAGTA 59.695 45.455 0.00 0.00 36.21 2.24
2900 3552 2.642154 TCCAAACGGGCAGAAAGTAA 57.358 45.000 0.00 0.00 36.21 2.24
2901 3553 2.223745 TCCAAACGGGCAGAAAGTAAC 58.776 47.619 0.00 0.00 36.21 2.50
2902 3554 1.950909 CCAAACGGGCAGAAAGTAACA 59.049 47.619 0.00 0.00 0.00 2.41
2903 3555 2.031157 CCAAACGGGCAGAAAGTAACAG 60.031 50.000 0.00 0.00 0.00 3.16
2904 3556 2.875933 CAAACGGGCAGAAAGTAACAGA 59.124 45.455 0.00 0.00 0.00 3.41
2905 3557 2.922740 ACGGGCAGAAAGTAACAGAA 57.077 45.000 0.00 0.00 0.00 3.02
2906 3558 2.490991 ACGGGCAGAAAGTAACAGAAC 58.509 47.619 0.00 0.00 0.00 3.01
2907 3559 1.804748 CGGGCAGAAAGTAACAGAACC 59.195 52.381 0.00 0.00 0.00 3.62
2908 3560 2.160205 GGGCAGAAAGTAACAGAACCC 58.840 52.381 0.00 0.00 0.00 4.11
2909 3561 2.488347 GGGCAGAAAGTAACAGAACCCA 60.488 50.000 0.00 0.00 34.82 4.51
2910 3562 3.219281 GGCAGAAAGTAACAGAACCCAA 58.781 45.455 0.00 0.00 0.00 4.12
2911 3563 3.826729 GGCAGAAAGTAACAGAACCCAAT 59.173 43.478 0.00 0.00 0.00 3.16
2912 3564 4.280929 GGCAGAAAGTAACAGAACCCAATT 59.719 41.667 0.00 0.00 0.00 2.32
2913 3565 5.221441 GGCAGAAAGTAACAGAACCCAATTT 60.221 40.000 0.00 0.00 0.00 1.82
2914 3566 6.280643 GCAGAAAGTAACAGAACCCAATTTT 58.719 36.000 0.00 0.00 0.00 1.82
2915 3567 6.761242 GCAGAAAGTAACAGAACCCAATTTTT 59.239 34.615 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
117 122 5.576563 TTTCCTCAAGTGGATGACCTAAA 57.423 39.130 0.00 0.00 35.83 1.85
178 183 6.152932 ACCTTCTTCTTGTAGACGTTGTTA 57.847 37.500 0.00 0.00 0.00 2.41
246 251 5.483685 AGATGTACCTTCAAGTGCTAACA 57.516 39.130 0.00 0.00 0.00 2.41
253 258 7.550906 GCAAGATCTAAAGATGTACCTTCAAGT 59.449 37.037 0.00 0.00 34.37 3.16
380 387 8.623903 TCGGAATCCTTATTTTCATGAAAGATG 58.376 33.333 19.64 13.58 0.00 2.90
519 527 6.877236 TCATGACTAGTGCAATCATCAGTAA 58.123 36.000 0.00 0.00 30.58 2.24
522 530 5.989777 TCATCATGACTAGTGCAATCATCAG 59.010 40.000 0.00 0.00 30.58 2.90
666 674 4.144297 TCAGCACAAACATCTAGCCTTTT 58.856 39.130 0.00 0.00 0.00 2.27
720 728 8.594881 TTTAAATGACCACGTTTATTGCAAAT 57.405 26.923 1.71 0.00 37.34 2.32
729 737 7.491048 GCATTGGATATTTAAATGACCACGTTT 59.509 33.333 20.21 9.05 38.54 3.60
775 783 6.409524 AGTCATCACAATTTTTGGACATGT 57.590 33.333 0.00 0.00 34.12 3.21
817 825 6.206829 ACCCAGAAGCAAACTAAATTCACTAC 59.793 38.462 0.00 0.00 0.00 2.73
820 828 5.453567 ACCCAGAAGCAAACTAAATTCAC 57.546 39.130 0.00 0.00 0.00 3.18
825 833 7.001674 TCTTCATAACCCAGAAGCAAACTAAA 58.998 34.615 0.00 0.00 40.72 1.85
865 873 9.305925 CAAAGGCAAATTCTGAAATATCCTTAC 57.694 33.333 13.76 0.00 32.38 2.34
876 884 8.181904 AGAACTTTATCAAAGGCAAATTCTGA 57.818 30.769 3.88 0.00 42.82 3.27
981 989 9.837525 CTCTTCATCTTCTAATTGTTTTCTTGG 57.162 33.333 0.00 0.00 0.00 3.61
1077 1085 2.562296 TGGTTGGATAGAAGGCTCCTT 58.438 47.619 0.00 0.00 39.23 3.36
1197 1208 9.851686 AATGAGTAATAGGAGCAACATCATTTA 57.148 29.630 0.00 0.00 32.50 1.40
1263 1274 7.778470 AAAAATCAGCAAAAATAAACCGTGA 57.222 28.000 0.00 0.00 0.00 4.35
1290 1303 0.348370 AGGGAGGTGGGAGGATTGAT 59.652 55.000 0.00 0.00 0.00 2.57
1325 1340 3.680620 TTTCTCATGCGAGGGGGCG 62.681 63.158 0.00 0.00 39.95 6.13
1411 1430 0.876342 GCGCGGGGAGAGATTGTTAG 60.876 60.000 8.83 0.00 0.00 2.34
1416 1435 3.854669 CAGGCGCGGGGAGAGATT 61.855 66.667 8.83 0.00 0.00 2.40
1470 1489 1.077357 GAGAGAGAGAGGGTCGCCA 60.077 63.158 0.00 0.00 0.00 5.69
1472 1491 0.818040 GGAGAGAGAGAGAGGGTCGC 60.818 65.000 0.00 0.00 0.00 5.19
1499 1540 4.910585 GGCTCCGGGGTATGCGTG 62.911 72.222 1.62 0.00 0.00 5.34
1550 1591 0.611340 GGAGTAGACACAGGGGTCGT 60.611 60.000 0.00 0.00 42.62 4.34
1562 1603 1.271982 ACGCCTCAAGAGTGGAGTAGA 60.272 52.381 0.00 0.00 39.22 2.59
1596 1637 0.965363 AGCCAACGCCATCGGATTTT 60.965 50.000 0.00 0.00 40.69 1.82
1600 1641 2.745884 CAAGCCAACGCCATCGGA 60.746 61.111 0.00 0.00 40.69 4.55
1639 1680 2.717044 CCCGAGTACCGCATCACCA 61.717 63.158 0.00 0.00 36.84 4.17
1896 1943 2.301870 ACCTCCACTGCTATTCAACGAA 59.698 45.455 0.00 0.00 0.00 3.85
1905 1952 1.347707 CCTCAAACACCTCCACTGCTA 59.652 52.381 0.00 0.00 0.00 3.49
1911 1958 1.694150 CAGACTCCTCAAACACCTCCA 59.306 52.381 0.00 0.00 0.00 3.86
2436 3088 7.724490 TTCTCATACCTTCTCTTCATTCTGA 57.276 36.000 0.00 0.00 0.00 3.27
2507 3159 8.142485 ACATGATTTTGAGGAATCCAAGAATT 57.858 30.769 0.61 0.00 35.61 2.17
2551 3203 9.122613 GCAGTTCTTACTTTTGAGATTGAAATC 57.877 33.333 0.00 0.00 31.90 2.17
2552 3204 8.632679 TGCAGTTCTTACTTTTGAGATTGAAAT 58.367 29.630 0.00 0.00 30.26 2.17
2553 3205 7.995289 TGCAGTTCTTACTTTTGAGATTGAAA 58.005 30.769 0.00 0.00 30.26 2.69
2554 3206 7.566760 TGCAGTTCTTACTTTTGAGATTGAA 57.433 32.000 0.00 0.00 30.26 2.69
2555 3207 7.229306 ACATGCAGTTCTTACTTTTGAGATTGA 59.771 33.333 0.00 0.00 30.26 2.57
2556 3208 7.325338 CACATGCAGTTCTTACTTTTGAGATTG 59.675 37.037 0.00 0.00 30.26 2.67
2557 3209 7.229306 TCACATGCAGTTCTTACTTTTGAGATT 59.771 33.333 0.00 0.00 30.26 2.40
2558 3210 6.712095 TCACATGCAGTTCTTACTTTTGAGAT 59.288 34.615 0.00 0.00 30.26 2.75
2559 3211 6.054941 TCACATGCAGTTCTTACTTTTGAGA 58.945 36.000 0.00 0.00 30.26 3.27
2560 3212 6.304356 TCACATGCAGTTCTTACTTTTGAG 57.696 37.500 0.00 0.00 30.26 3.02
2561 3213 6.671190 CATCACATGCAGTTCTTACTTTTGA 58.329 36.000 0.00 0.00 30.26 2.69
2562 3214 6.922980 CATCACATGCAGTTCTTACTTTTG 57.077 37.500 0.00 0.00 30.26 2.44
2577 3229 7.198306 TCTCTTGCTATAATTGCATCACATG 57.802 36.000 0.00 0.00 40.34 3.21
2578 3230 7.997773 ATCTCTTGCTATAATTGCATCACAT 57.002 32.000 0.00 0.00 40.34 3.21
2579 3231 7.812690 AATCTCTTGCTATAATTGCATCACA 57.187 32.000 0.00 0.00 40.34 3.58
2580 3232 9.212641 TCTAATCTCTTGCTATAATTGCATCAC 57.787 33.333 0.00 0.00 40.34 3.06
2581 3233 9.955102 ATCTAATCTCTTGCTATAATTGCATCA 57.045 29.630 0.00 0.00 40.34 3.07
2583 3235 9.955102 TGATCTAATCTCTTGCTATAATTGCAT 57.045 29.630 0.00 0.00 40.34 3.96
2584 3236 9.433153 CTGATCTAATCTCTTGCTATAATTGCA 57.567 33.333 0.00 0.00 38.80 4.08
2585 3237 8.389603 GCTGATCTAATCTCTTGCTATAATTGC 58.610 37.037 0.00 0.00 0.00 3.56
2586 3238 9.656040 AGCTGATCTAATCTCTTGCTATAATTG 57.344 33.333 0.00 0.00 0.00 2.32
2589 3241 9.746457 TCTAGCTGATCTAATCTCTTGCTATAA 57.254 33.333 0.00 0.00 32.46 0.98
2590 3242 9.173021 GTCTAGCTGATCTAATCTCTTGCTATA 57.827 37.037 0.00 0.00 32.46 1.31
2591 3243 7.669304 TGTCTAGCTGATCTAATCTCTTGCTAT 59.331 37.037 0.00 0.00 32.46 2.97
2592 3244 7.001073 TGTCTAGCTGATCTAATCTCTTGCTA 58.999 38.462 0.00 0.00 0.00 3.49
2593 3245 5.832595 TGTCTAGCTGATCTAATCTCTTGCT 59.167 40.000 0.00 0.00 0.00 3.91
2594 3246 6.083098 TGTCTAGCTGATCTAATCTCTTGC 57.917 41.667 0.00 0.00 0.00 4.01
2595 3247 8.791675 TGTATGTCTAGCTGATCTAATCTCTTG 58.208 37.037 0.00 0.00 0.00 3.02
2596 3248 8.792633 GTGTATGTCTAGCTGATCTAATCTCTT 58.207 37.037 0.00 0.00 0.00 2.85
2597 3249 7.941790 TGTGTATGTCTAGCTGATCTAATCTCT 59.058 37.037 0.00 0.00 0.00 3.10
2598 3250 8.020819 GTGTGTATGTCTAGCTGATCTAATCTC 58.979 40.741 0.00 0.00 0.00 2.75
2599 3251 7.308288 CGTGTGTATGTCTAGCTGATCTAATCT 60.308 40.741 0.00 0.00 0.00 2.40
2600 3252 6.799441 CGTGTGTATGTCTAGCTGATCTAATC 59.201 42.308 0.00 0.00 0.00 1.75
2601 3253 6.673106 CGTGTGTATGTCTAGCTGATCTAAT 58.327 40.000 0.00 0.00 0.00 1.73
2602 3254 5.505819 GCGTGTGTATGTCTAGCTGATCTAA 60.506 44.000 0.00 0.00 0.00 2.10
2603 3255 4.023963 GCGTGTGTATGTCTAGCTGATCTA 60.024 45.833 0.00 0.00 0.00 1.98
2604 3256 3.243234 GCGTGTGTATGTCTAGCTGATCT 60.243 47.826 0.00 0.00 0.00 2.75
2605 3257 3.046390 GCGTGTGTATGTCTAGCTGATC 58.954 50.000 0.00 0.00 0.00 2.92
2606 3258 2.427095 TGCGTGTGTATGTCTAGCTGAT 59.573 45.455 0.00 0.00 0.00 2.90
2607 3259 1.816224 TGCGTGTGTATGTCTAGCTGA 59.184 47.619 0.00 0.00 0.00 4.26
2608 3260 2.278026 TGCGTGTGTATGTCTAGCTG 57.722 50.000 0.00 0.00 0.00 4.24
2609 3261 2.690497 AGATGCGTGTGTATGTCTAGCT 59.310 45.455 0.00 0.00 0.00 3.32
2610 3262 3.085443 AGATGCGTGTGTATGTCTAGC 57.915 47.619 0.00 0.00 0.00 3.42
2611 3263 4.926244 AGAAGATGCGTGTGTATGTCTAG 58.074 43.478 0.00 0.00 0.00 2.43
2612 3264 4.983671 AGAAGATGCGTGTGTATGTCTA 57.016 40.909 0.00 0.00 0.00 2.59
2613 3265 3.876274 AGAAGATGCGTGTGTATGTCT 57.124 42.857 0.00 0.00 0.00 3.41
2614 3266 5.557136 GCATTAGAAGATGCGTGTGTATGTC 60.557 44.000 0.00 0.00 42.51 3.06
2615 3267 4.271049 GCATTAGAAGATGCGTGTGTATGT 59.729 41.667 0.00 0.00 42.51 2.29
2616 3268 4.766007 GCATTAGAAGATGCGTGTGTATG 58.234 43.478 0.00 0.00 42.51 2.39
2626 3278 3.875727 CTCCACTGGTGCATTAGAAGATG 59.124 47.826 7.12 0.00 0.00 2.90
2627 3279 3.521126 ACTCCACTGGTGCATTAGAAGAT 59.479 43.478 7.12 0.00 0.00 2.40
2628 3280 2.906389 ACTCCACTGGTGCATTAGAAGA 59.094 45.455 7.12 3.09 0.00 2.87
2629 3281 3.340814 ACTCCACTGGTGCATTAGAAG 57.659 47.619 7.12 4.57 0.00 2.85
2630 3282 5.185454 CAATACTCCACTGGTGCATTAGAA 58.815 41.667 7.12 0.00 0.00 2.10
2631 3283 4.225042 ACAATACTCCACTGGTGCATTAGA 59.775 41.667 7.12 0.00 0.00 2.10
2632 3284 4.517285 ACAATACTCCACTGGTGCATTAG 58.483 43.478 0.00 0.00 0.00 1.73
2633 3285 4.568072 ACAATACTCCACTGGTGCATTA 57.432 40.909 0.00 0.00 0.00 1.90
2634 3286 3.439857 ACAATACTCCACTGGTGCATT 57.560 42.857 0.00 0.00 0.00 3.56
2635 3287 3.009473 AGAACAATACTCCACTGGTGCAT 59.991 43.478 0.00 0.00 0.00 3.96
2636 3288 2.371841 AGAACAATACTCCACTGGTGCA 59.628 45.455 0.00 0.00 0.00 4.57
2637 3289 3.003480 GAGAACAATACTCCACTGGTGC 58.997 50.000 0.00 0.00 0.00 5.01
2646 3298 8.677300 TGCTTCAAATTATGGAGAACAATACTC 58.323 33.333 0.00 0.00 36.68 2.59
2647 3299 8.579850 TGCTTCAAATTATGGAGAACAATACT 57.420 30.769 1.45 0.00 36.68 2.12
2650 3302 9.976511 CATATGCTTCAAATTATGGAGAACAAT 57.023 29.630 0.00 0.00 36.68 2.71
2651 3303 8.415553 CCATATGCTTCAAATTATGGAGAACAA 58.584 33.333 0.00 0.00 36.68 2.83
2652 3304 7.014518 CCCATATGCTTCAAATTATGGAGAACA 59.985 37.037 8.94 0.00 36.68 3.18
2653 3305 7.373493 CCCATATGCTTCAAATTATGGAGAAC 58.627 38.462 8.94 0.00 36.68 3.01
2654 3306 6.015180 GCCCATATGCTTCAAATTATGGAGAA 60.015 38.462 8.94 0.00 36.68 2.87
2655 3307 5.477984 GCCCATATGCTTCAAATTATGGAGA 59.522 40.000 8.94 0.00 36.68 3.71
2656 3308 5.244402 TGCCCATATGCTTCAAATTATGGAG 59.756 40.000 8.94 0.00 37.28 3.86
2657 3309 5.146298 TGCCCATATGCTTCAAATTATGGA 58.854 37.500 8.94 0.00 37.28 3.41
2658 3310 5.471556 TGCCCATATGCTTCAAATTATGG 57.528 39.130 0.00 0.00 35.47 2.74
2659 3311 5.244402 TCCTGCCCATATGCTTCAAATTATG 59.756 40.000 0.00 0.00 0.00 1.90
2660 3312 5.244626 GTCCTGCCCATATGCTTCAAATTAT 59.755 40.000 0.00 0.00 0.00 1.28
2661 3313 4.584325 GTCCTGCCCATATGCTTCAAATTA 59.416 41.667 0.00 0.00 0.00 1.40
2662 3314 3.385755 GTCCTGCCCATATGCTTCAAATT 59.614 43.478 0.00 0.00 0.00 1.82
2663 3315 2.961062 GTCCTGCCCATATGCTTCAAAT 59.039 45.455 0.00 0.00 0.00 2.32
2664 3316 2.378038 GTCCTGCCCATATGCTTCAAA 58.622 47.619 0.00 0.00 0.00 2.69
2665 3317 1.746861 CGTCCTGCCCATATGCTTCAA 60.747 52.381 0.00 0.00 0.00 2.69
2666 3318 0.179048 CGTCCTGCCCATATGCTTCA 60.179 55.000 0.00 0.00 0.00 3.02
2667 3319 0.179045 ACGTCCTGCCCATATGCTTC 60.179 55.000 0.00 0.00 0.00 3.86
2668 3320 0.179045 GACGTCCTGCCCATATGCTT 60.179 55.000 3.51 0.00 0.00 3.91
2669 3321 1.447643 GACGTCCTGCCCATATGCT 59.552 57.895 3.51 0.00 0.00 3.79
2670 3322 1.956170 CGACGTCCTGCCCATATGC 60.956 63.158 10.58 0.00 0.00 3.14
2671 3323 0.318441 ATCGACGTCCTGCCCATATG 59.682 55.000 10.58 0.00 0.00 1.78
2672 3324 0.318441 CATCGACGTCCTGCCCATAT 59.682 55.000 10.58 0.00 0.00 1.78
2673 3325 1.739667 CATCGACGTCCTGCCCATA 59.260 57.895 10.58 0.00 0.00 2.74
2674 3326 2.501128 CATCGACGTCCTGCCCAT 59.499 61.111 10.58 0.00 0.00 4.00
2675 3327 3.770040 CCATCGACGTCCTGCCCA 61.770 66.667 10.58 0.00 0.00 5.36
2677 3329 3.665675 AAGCCATCGACGTCCTGCC 62.666 63.158 10.58 0.00 0.00 4.85
2678 3330 2.125512 AAGCCATCGACGTCCTGC 60.126 61.111 10.58 7.52 0.00 4.85
2679 3331 4.094684 GAAGCCATCGACGTCCTG 57.905 61.111 10.58 7.87 0.00 3.86
2693 3345 0.528017 TGTGGTCTAGAGCAGCGAAG 59.472 55.000 24.43 0.00 39.74 3.79
2694 3346 0.966179 TTGTGGTCTAGAGCAGCGAA 59.034 50.000 24.43 14.37 39.74 4.70
2695 3347 1.134995 CATTGTGGTCTAGAGCAGCGA 60.135 52.381 24.43 17.81 39.74 4.93
2696 3348 1.134995 TCATTGTGGTCTAGAGCAGCG 60.135 52.381 24.43 12.94 39.74 5.18
2697 3349 2.680312 TCATTGTGGTCTAGAGCAGC 57.320 50.000 24.43 18.24 39.74 5.25
2698 3350 4.397481 TCATCATTGTGGTCTAGAGCAG 57.603 45.455 24.43 13.02 39.74 4.24
2699 3351 4.020307 TGTTCATCATTGTGGTCTAGAGCA 60.020 41.667 20.43 20.43 36.34 4.26
2700 3352 4.507710 TGTTCATCATTGTGGTCTAGAGC 58.492 43.478 15.12 15.12 0.00 4.09
2701 3353 6.820152 TCATTGTTCATCATTGTGGTCTAGAG 59.180 38.462 0.00 0.00 0.00 2.43
2702 3354 6.710278 TCATTGTTCATCATTGTGGTCTAGA 58.290 36.000 0.00 0.00 0.00 2.43
2703 3355 6.990341 TCATTGTTCATCATTGTGGTCTAG 57.010 37.500 0.00 0.00 0.00 2.43
2704 3356 7.448161 AGTTTCATTGTTCATCATTGTGGTCTA 59.552 33.333 0.00 0.00 0.00 2.59
2705 3357 6.266103 AGTTTCATTGTTCATCATTGTGGTCT 59.734 34.615 0.00 0.00 0.00 3.85
2706 3358 6.449698 AGTTTCATTGTTCATCATTGTGGTC 58.550 36.000 0.00 0.00 0.00 4.02
2707 3359 6.409524 AGTTTCATTGTTCATCATTGTGGT 57.590 33.333 0.00 0.00 0.00 4.16
2708 3360 5.570206 CGAGTTTCATTGTTCATCATTGTGG 59.430 40.000 0.00 0.00 0.00 4.17
2709 3361 6.144854 ACGAGTTTCATTGTTCATCATTGTG 58.855 36.000 0.00 0.00 0.00 3.33
2710 3362 6.317789 ACGAGTTTCATTGTTCATCATTGT 57.682 33.333 0.00 0.00 0.00 2.71
2711 3363 7.689812 GTCTACGAGTTTCATTGTTCATCATTG 59.310 37.037 0.00 0.00 0.00 2.82
2712 3364 7.148407 GGTCTACGAGTTTCATTGTTCATCATT 60.148 37.037 0.00 0.00 0.00 2.57
2713 3365 6.313905 GGTCTACGAGTTTCATTGTTCATCAT 59.686 38.462 0.00 0.00 0.00 2.45
2714 3366 5.637810 GGTCTACGAGTTTCATTGTTCATCA 59.362 40.000 0.00 0.00 0.00 3.07
2715 3367 5.063564 GGGTCTACGAGTTTCATTGTTCATC 59.936 44.000 0.00 0.00 0.00 2.92
2716 3368 4.935808 GGGTCTACGAGTTTCATTGTTCAT 59.064 41.667 0.00 0.00 0.00 2.57
2717 3369 4.039973 AGGGTCTACGAGTTTCATTGTTCA 59.960 41.667 0.00 0.00 0.00 3.18
2718 3370 4.566987 AGGGTCTACGAGTTTCATTGTTC 58.433 43.478 0.00 0.00 0.00 3.18
2719 3371 4.618920 AGGGTCTACGAGTTTCATTGTT 57.381 40.909 0.00 0.00 0.00 2.83
2720 3372 4.618920 AAGGGTCTACGAGTTTCATTGT 57.381 40.909 0.00 0.00 0.00 2.71
2721 3373 5.941948 AAAAGGGTCTACGAGTTTCATTG 57.058 39.130 0.00 0.00 0.00 2.82
2722 3374 5.826208 ACAAAAAGGGTCTACGAGTTTCATT 59.174 36.000 0.00 0.00 0.00 2.57
2723 3375 5.374071 ACAAAAAGGGTCTACGAGTTTCAT 58.626 37.500 0.00 0.00 0.00 2.57
2724 3376 4.773013 ACAAAAAGGGTCTACGAGTTTCA 58.227 39.130 0.00 0.00 0.00 2.69
2725 3377 4.812626 TGACAAAAAGGGTCTACGAGTTTC 59.187 41.667 0.00 0.00 36.26 2.78
2726 3378 4.573607 GTGACAAAAAGGGTCTACGAGTTT 59.426 41.667 0.00 0.00 36.26 2.66
2727 3379 4.124970 GTGACAAAAAGGGTCTACGAGTT 58.875 43.478 0.00 0.00 36.26 3.01
2728 3380 3.133362 TGTGACAAAAAGGGTCTACGAGT 59.867 43.478 0.00 0.00 36.26 4.18
2729 3381 3.724374 TGTGACAAAAAGGGTCTACGAG 58.276 45.455 0.00 0.00 36.26 4.18
2730 3382 3.133362 ACTGTGACAAAAAGGGTCTACGA 59.867 43.478 0.00 0.00 36.26 3.43
2731 3383 3.463944 ACTGTGACAAAAAGGGTCTACG 58.536 45.455 0.00 0.00 36.26 3.51
2732 3384 5.449999 CCAAACTGTGACAAAAAGGGTCTAC 60.450 44.000 0.00 0.00 36.26 2.59
2733 3385 4.642885 CCAAACTGTGACAAAAAGGGTCTA 59.357 41.667 0.00 0.00 36.26 2.59
2734 3386 3.447229 CCAAACTGTGACAAAAAGGGTCT 59.553 43.478 0.00 0.00 36.26 3.85
2735 3387 3.194755 ACCAAACTGTGACAAAAAGGGTC 59.805 43.478 0.00 0.00 35.83 4.46
2736 3388 3.056179 CACCAAACTGTGACAAAAAGGGT 60.056 43.478 0.00 0.00 38.55 4.34
2737 3389 3.520569 CACCAAACTGTGACAAAAAGGG 58.479 45.455 0.00 0.00 38.55 3.95
2738 3390 3.194542 TCCACCAAACTGTGACAAAAAGG 59.805 43.478 0.00 0.00 38.55 3.11
2739 3391 4.448537 TCCACCAAACTGTGACAAAAAG 57.551 40.909 0.00 0.00 38.55 2.27
2740 3392 4.382470 CCATCCACCAAACTGTGACAAAAA 60.382 41.667 0.00 0.00 38.55 1.94
2741 3393 3.131933 CCATCCACCAAACTGTGACAAAA 59.868 43.478 0.00 0.00 38.55 2.44
2742 3394 2.692557 CCATCCACCAAACTGTGACAAA 59.307 45.455 0.00 0.00 38.55 2.83
2743 3395 2.305928 CCATCCACCAAACTGTGACAA 58.694 47.619 0.00 0.00 38.55 3.18
2744 3396 1.979855 CCATCCACCAAACTGTGACA 58.020 50.000 0.00 0.00 38.55 3.58
2745 3397 0.598065 GCCATCCACCAAACTGTGAC 59.402 55.000 0.00 0.00 38.55 3.67
2746 3398 0.539438 GGCCATCCACCAAACTGTGA 60.539 55.000 0.00 0.00 38.55 3.58
2747 3399 1.865788 CGGCCATCCACCAAACTGTG 61.866 60.000 2.24 0.00 35.98 3.66
2748 3400 1.603455 CGGCCATCCACCAAACTGT 60.603 57.895 2.24 0.00 0.00 3.55
2749 3401 2.342650 CCGGCCATCCACCAAACTG 61.343 63.158 2.24 0.00 0.00 3.16
2750 3402 2.035626 CCGGCCATCCACCAAACT 59.964 61.111 2.24 0.00 0.00 2.66
2751 3403 3.758931 GCCGGCCATCCACCAAAC 61.759 66.667 18.11 0.00 0.00 2.93
2776 3428 7.883229 AAATTTAGTTATTTGCCACCGAAAG 57.117 32.000 0.00 0.00 0.00 2.62
2777 3429 9.930693 AATAAATTTAGTTATTTGCCACCGAAA 57.069 25.926 3.94 0.00 31.07 3.46
2778 3430 9.930693 AAATAAATTTAGTTATTTGCCACCGAA 57.069 25.926 9.05 0.00 40.50 4.30
2779 3431 9.930693 AAAATAAATTTAGTTATTTGCCACCGA 57.069 25.926 11.00 0.00 40.92 4.69
2780 3432 9.965748 CAAAATAAATTTAGTTATTTGCCACCG 57.034 29.630 11.00 0.00 40.92 4.94
2782 3434 9.767684 GCCAAAATAAATTTAGTTATTTGCCAC 57.232 29.630 11.00 5.56 40.92 5.01
2783 3435 9.507329 TGCCAAAATAAATTTAGTTATTTGCCA 57.493 25.926 11.00 8.88 40.92 4.92
2784 3436 9.986833 CTGCCAAAATAAATTTAGTTATTTGCC 57.013 29.630 11.00 6.86 40.92 4.52
2785 3437 9.489393 GCTGCCAAAATAAATTTAGTTATTTGC 57.511 29.630 11.00 11.17 40.92 3.68
2789 3441 9.889128 ACATGCTGCCAAAATAAATTTAGTTAT 57.111 25.926 11.00 0.00 0.00 1.89
2790 3442 9.717942 AACATGCTGCCAAAATAAATTTAGTTA 57.282 25.926 11.00 0.00 0.00 2.24
2791 3443 8.620116 AACATGCTGCCAAAATAAATTTAGTT 57.380 26.923 5.11 5.11 0.00 2.24
2792 3444 9.369904 CTAACATGCTGCCAAAATAAATTTAGT 57.630 29.630 3.94 0.00 0.00 2.24
2793 3445 9.585099 TCTAACATGCTGCCAAAATAAATTTAG 57.415 29.630 3.94 0.00 0.00 1.85
2794 3446 9.585099 CTCTAACATGCTGCCAAAATAAATTTA 57.415 29.630 0.00 0.00 0.00 1.40
2795 3447 7.550196 CCTCTAACATGCTGCCAAAATAAATTT 59.450 33.333 0.00 0.00 0.00 1.82
2796 3448 7.043565 CCTCTAACATGCTGCCAAAATAAATT 58.956 34.615 0.00 0.00 0.00 1.82
2797 3449 6.407299 CCCTCTAACATGCTGCCAAAATAAAT 60.407 38.462 0.00 0.00 0.00 1.40
2798 3450 5.105392 CCCTCTAACATGCTGCCAAAATAAA 60.105 40.000 0.00 0.00 0.00 1.40
2799 3451 4.402155 CCCTCTAACATGCTGCCAAAATAA 59.598 41.667 0.00 0.00 0.00 1.40
2800 3452 3.953612 CCCTCTAACATGCTGCCAAAATA 59.046 43.478 0.00 0.00 0.00 1.40
2801 3453 2.762327 CCCTCTAACATGCTGCCAAAAT 59.238 45.455 0.00 0.00 0.00 1.82
2802 3454 2.170166 CCCTCTAACATGCTGCCAAAA 58.830 47.619 0.00 0.00 0.00 2.44
2803 3455 1.354031 TCCCTCTAACATGCTGCCAAA 59.646 47.619 0.00 0.00 0.00 3.28
2804 3456 0.991146 TCCCTCTAACATGCTGCCAA 59.009 50.000 0.00 0.00 0.00 4.52
2805 3457 0.543277 CTCCCTCTAACATGCTGCCA 59.457 55.000 0.00 0.00 0.00 4.92
2806 3458 0.833287 TCTCCCTCTAACATGCTGCC 59.167 55.000 0.00 0.00 0.00 4.85
2807 3459 1.202627 CCTCTCCCTCTAACATGCTGC 60.203 57.143 0.00 0.00 0.00 5.25
2808 3460 2.392662 TCCTCTCCCTCTAACATGCTG 58.607 52.381 0.00 0.00 0.00 4.41
2809 3461 2.856760 TCCTCTCCCTCTAACATGCT 57.143 50.000 0.00 0.00 0.00 3.79
2810 3462 2.038295 CCATCCTCTCCCTCTAACATGC 59.962 54.545 0.00 0.00 0.00 4.06
2811 3463 3.312890 ACCATCCTCTCCCTCTAACATG 58.687 50.000 0.00 0.00 0.00 3.21
2812 3464 3.715648 ACCATCCTCTCCCTCTAACAT 57.284 47.619 0.00 0.00 0.00 2.71
2813 3465 3.491766 AACCATCCTCTCCCTCTAACA 57.508 47.619 0.00 0.00 0.00 2.41
2814 3466 6.104146 GATAAACCATCCTCTCCCTCTAAC 57.896 45.833 0.00 0.00 0.00 2.34
2827 3479 5.297029 GCACCAAACTAGAGGATAAACCATC 59.703 44.000 0.00 0.00 42.04 3.51
2828 3480 5.193679 GCACCAAACTAGAGGATAAACCAT 58.806 41.667 0.00 0.00 42.04 3.55
2829 3481 4.585879 GCACCAAACTAGAGGATAAACCA 58.414 43.478 0.00 0.00 42.04 3.67
2830 3482 3.621715 CGCACCAAACTAGAGGATAAACC 59.378 47.826 0.00 0.00 39.35 3.27
2831 3483 4.329256 GTCGCACCAAACTAGAGGATAAAC 59.671 45.833 0.00 0.00 0.00 2.01
2832 3484 4.501071 GTCGCACCAAACTAGAGGATAAA 58.499 43.478 0.00 0.00 0.00 1.40
2833 3485 3.118884 GGTCGCACCAAACTAGAGGATAA 60.119 47.826 0.00 0.00 38.42 1.75
2834 3486 2.429610 GGTCGCACCAAACTAGAGGATA 59.570 50.000 0.00 0.00 38.42 2.59
2835 3487 1.207329 GGTCGCACCAAACTAGAGGAT 59.793 52.381 0.00 0.00 38.42 3.24
2836 3488 0.606604 GGTCGCACCAAACTAGAGGA 59.393 55.000 0.00 0.00 38.42 3.71
2837 3489 0.608640 AGGTCGCACCAAACTAGAGG 59.391 55.000 0.00 0.00 41.95 3.69
2838 3490 1.272490 TCAGGTCGCACCAAACTAGAG 59.728 52.381 0.00 0.00 41.95 2.43
2839 3491 1.334160 TCAGGTCGCACCAAACTAGA 58.666 50.000 0.00 0.00 41.95 2.43
2840 3492 2.163818 TTCAGGTCGCACCAAACTAG 57.836 50.000 7.86 0.00 41.95 2.57
2841 3493 2.215196 GTTTCAGGTCGCACCAAACTA 58.785 47.619 7.86 0.00 41.95 2.24
2842 3494 1.021968 GTTTCAGGTCGCACCAAACT 58.978 50.000 7.86 0.00 41.95 2.66
2843 3495 0.736053 TGTTTCAGGTCGCACCAAAC 59.264 50.000 7.86 9.81 41.95 2.93
2844 3496 1.686355 ATGTTTCAGGTCGCACCAAA 58.314 45.000 7.86 0.00 41.95 3.28
2845 3497 2.422597 CTATGTTTCAGGTCGCACCAA 58.577 47.619 7.86 0.00 41.95 3.67
2846 3498 1.338674 CCTATGTTTCAGGTCGCACCA 60.339 52.381 7.86 0.00 41.95 4.17
2847 3499 1.369625 CCTATGTTTCAGGTCGCACC 58.630 55.000 0.00 0.00 38.99 5.01
2848 3500 1.369625 CCCTATGTTTCAGGTCGCAC 58.630 55.000 0.00 0.00 0.00 5.34
2849 3501 0.392461 GCCCTATGTTTCAGGTCGCA 60.392 55.000 0.00 0.00 0.00 5.10
2850 3502 0.392461 TGCCCTATGTTTCAGGTCGC 60.392 55.000 0.00 0.00 0.00 5.19
2851 3503 2.332063 ATGCCCTATGTTTCAGGTCG 57.668 50.000 0.00 0.00 0.00 4.79
2852 3504 6.115448 ACTATATGCCCTATGTTTCAGGTC 57.885 41.667 0.00 0.00 0.00 3.85
2853 3505 6.515512 AACTATATGCCCTATGTTTCAGGT 57.484 37.500 0.00 0.00 0.00 4.00
2854 3506 8.375506 TCTTAACTATATGCCCTATGTTTCAGG 58.624 37.037 0.00 0.00 0.00 3.86
2855 3507 9.950496 ATCTTAACTATATGCCCTATGTTTCAG 57.050 33.333 0.00 0.00 0.00 3.02
2856 3508 9.944376 GATCTTAACTATATGCCCTATGTTTCA 57.056 33.333 0.00 0.00 0.00 2.69
2857 3509 9.384764 GGATCTTAACTATATGCCCTATGTTTC 57.615 37.037 0.00 0.00 0.00 2.78
2858 3510 8.890472 TGGATCTTAACTATATGCCCTATGTTT 58.110 33.333 0.00 0.00 0.00 2.83
2859 3511 8.449423 TGGATCTTAACTATATGCCCTATGTT 57.551 34.615 0.00 0.00 0.00 2.71
2860 3512 8.449423 TTGGATCTTAACTATATGCCCTATGT 57.551 34.615 0.00 0.00 0.00 2.29
2861 3513 9.167311 GTTTGGATCTTAACTATATGCCCTATG 57.833 37.037 0.00 0.00 0.00 2.23
2862 3514 8.041323 CGTTTGGATCTTAACTATATGCCCTAT 58.959 37.037 0.00 0.00 0.00 2.57
2863 3515 7.383687 CGTTTGGATCTTAACTATATGCCCTA 58.616 38.462 0.00 0.00 0.00 3.53
2864 3516 6.231211 CGTTTGGATCTTAACTATATGCCCT 58.769 40.000 0.00 0.00 0.00 5.19
2865 3517 5.411669 CCGTTTGGATCTTAACTATATGCCC 59.588 44.000 0.00 0.00 37.49 5.36
2866 3518 5.411669 CCCGTTTGGATCTTAACTATATGCC 59.588 44.000 0.00 0.00 37.49 4.40
2867 3519 5.106673 GCCCGTTTGGATCTTAACTATATGC 60.107 44.000 0.00 0.00 37.49 3.14
2868 3520 5.995282 TGCCCGTTTGGATCTTAACTATATG 59.005 40.000 0.00 0.00 37.49 1.78
2869 3521 6.042781 TCTGCCCGTTTGGATCTTAACTATAT 59.957 38.462 0.00 0.00 37.49 0.86
2870 3522 5.364446 TCTGCCCGTTTGGATCTTAACTATA 59.636 40.000 0.00 0.00 37.49 1.31
2871 3523 4.163458 TCTGCCCGTTTGGATCTTAACTAT 59.837 41.667 0.00 0.00 37.49 2.12
2872 3524 3.516300 TCTGCCCGTTTGGATCTTAACTA 59.484 43.478 0.00 0.00 37.49 2.24
2873 3525 2.304761 TCTGCCCGTTTGGATCTTAACT 59.695 45.455 0.00 0.00 37.49 2.24
2874 3526 2.706890 TCTGCCCGTTTGGATCTTAAC 58.293 47.619 0.00 0.00 37.49 2.01
2875 3527 3.426787 TTCTGCCCGTTTGGATCTTAA 57.573 42.857 0.00 0.00 37.49 1.85
2876 3528 3.244770 ACTTTCTGCCCGTTTGGATCTTA 60.245 43.478 0.00 0.00 37.49 2.10
2877 3529 2.162681 CTTTCTGCCCGTTTGGATCTT 58.837 47.619 0.00 0.00 37.49 2.40
2878 3530 1.073923 ACTTTCTGCCCGTTTGGATCT 59.926 47.619 0.00 0.00 37.49 2.75
2879 3531 1.534729 ACTTTCTGCCCGTTTGGATC 58.465 50.000 0.00 0.00 37.49 3.36
2880 3532 2.817844 GTTACTTTCTGCCCGTTTGGAT 59.182 45.455 0.00 0.00 37.49 3.41
2881 3533 2.223745 GTTACTTTCTGCCCGTTTGGA 58.776 47.619 0.00 0.00 37.49 3.53
2882 3534 1.950909 TGTTACTTTCTGCCCGTTTGG 59.049 47.619 0.00 0.00 37.09 3.28
2883 3535 2.875933 TCTGTTACTTTCTGCCCGTTTG 59.124 45.455 0.00 0.00 0.00 2.93
2884 3536 3.202829 TCTGTTACTTTCTGCCCGTTT 57.797 42.857 0.00 0.00 0.00 3.60
2885 3537 2.876550 GTTCTGTTACTTTCTGCCCGTT 59.123 45.455 0.00 0.00 0.00 4.44
2886 3538 2.490991 GTTCTGTTACTTTCTGCCCGT 58.509 47.619 0.00 0.00 0.00 5.28
2887 3539 1.804748 GGTTCTGTTACTTTCTGCCCG 59.195 52.381 0.00 0.00 0.00 6.13
2888 3540 2.160205 GGGTTCTGTTACTTTCTGCCC 58.840 52.381 0.00 0.00 0.00 5.36
2889 3541 2.858745 TGGGTTCTGTTACTTTCTGCC 58.141 47.619 0.00 0.00 0.00 4.85
2890 3542 5.453567 AATTGGGTTCTGTTACTTTCTGC 57.546 39.130 0.00 0.00 0.00 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.