Multiple sequence alignment - TraesCS4A01G158800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G158800 chr4A 100.000 4653 0 0 1 4653 329168098 329172750 0.000000e+00 8593.0
1 TraesCS4A01G158800 chr4A 97.346 1884 42 6 2773 4653 398499301 398497423 0.000000e+00 3195.0
2 TraesCS4A01G158800 chr4A 92.588 850 43 8 2772 3617 615184988 615184155 0.000000e+00 1203.0
3 TraesCS4A01G158800 chr2A 97.028 1884 51 5 2773 4653 176886328 176884447 0.000000e+00 3164.0
4 TraesCS4A01G158800 chr2A 96.499 1885 61 5 2772 4653 642253575 642251693 0.000000e+00 3110.0
5 TraesCS4A01G158800 chr1B 89.906 1922 110 45 2773 4653 549889857 549887979 0.000000e+00 2398.0
6 TraesCS4A01G158800 chr1B 83.456 272 37 7 1596 1864 633236082 633236348 3.600000e-61 246.0
7 TraesCS4A01G158800 chr1B 94.737 76 4 0 1436 1511 633235853 633235928 8.180000e-23 119.0
8 TraesCS4A01G158800 chr7D 90.667 1425 105 13 1242 2660 383894511 383895913 0.000000e+00 1869.0
9 TraesCS4A01G158800 chr7D 76.577 1110 192 50 2773 3839 535786005 535784921 8.800000e-152 547.0
10 TraesCS4A01G158800 chr1D 90.039 1014 71 7 1171 2178 388611781 388610792 0.000000e+00 1286.0
11 TraesCS4A01G158800 chr1D 90.120 334 30 2 2323 2655 388608949 388608618 9.250000e-117 431.0
12 TraesCS4A01G158800 chr1D 74.242 396 98 4 1958 2353 20708935 20709326 3.730000e-36 163.0
13 TraesCS4A01G158800 chr1D 95.876 97 4 0 1 97 52608295 52608199 1.730000e-34 158.0
14 TraesCS4A01G158800 chr1D 95.876 97 4 0 1 97 440780471 440780567 1.730000e-34 158.0
15 TraesCS4A01G158800 chr1D 95.876 97 4 0 1 97 440782025 440782121 1.730000e-34 158.0
16 TraesCS4A01G158800 chr1D 95.876 97 4 0 1 97 440783316 440783412 1.730000e-34 158.0
17 TraesCS4A01G158800 chr7B 90.228 921 80 6 1736 2652 720468094 720469008 0.000000e+00 1194.0
18 TraesCS4A01G158800 chr7B 89.753 566 37 4 1175 1739 720467446 720467991 0.000000e+00 704.0
19 TraesCS4A01G158800 chr7B 85.997 657 53 13 107 738 65349470 65350112 0.000000e+00 667.0
20 TraesCS4A01G158800 chr7B 86.755 453 25 6 723 1161 65350297 65350728 5.450000e-129 472.0
21 TraesCS4A01G158800 chr7B 76.196 794 143 33 3221 3990 198147970 198147199 1.220000e-100 377.0
22 TraesCS4A01G158800 chr7B 80.932 236 41 3 2420 2653 613596272 613596505 2.860000e-42 183.0
23 TraesCS4A01G158800 chr7B 94.737 76 4 0 1436 1511 699953123 699953048 8.180000e-23 119.0
24 TraesCS4A01G158800 chr7B 78.409 176 35 3 2480 2653 603828263 603828089 1.370000e-20 111.0
25 TraesCS4A01G158800 chr6D 94.194 689 33 4 2773 3458 438886552 438885868 0.000000e+00 1044.0
26 TraesCS4A01G158800 chr6D 86.118 389 52 2 1894 2281 26626779 26626392 7.200000e-113 418.0
27 TraesCS4A01G158800 chr1A 86.394 757 96 5 1640 2392 507945444 507944691 0.000000e+00 821.0
28 TraesCS4A01G158800 chr1A 80.702 114 19 2 1225 1338 507947361 507947251 8.300000e-13 86.1
29 TraesCS4A01G158800 chr3A 89.677 620 40 8 4034 4653 581852728 581853323 0.000000e+00 769.0
30 TraesCS4A01G158800 chr3A 89.493 276 13 2 2769 3044 581852443 581852702 7.460000e-88 335.0
31 TraesCS4A01G158800 chr3A 97.938 97 2 0 1 97 652356395 652356491 8.010000e-38 169.0
32 TraesCS4A01G158800 chr3A 95.918 98 4 0 1 98 652692310 652692407 4.820000e-35 159.0
33 TraesCS4A01G158800 chr2D 85.972 499 68 2 1913 2410 484784684 484784187 2.460000e-147 532.0
34 TraesCS4A01G158800 chr2D 86.301 292 38 2 2120 2410 484783814 484783524 2.700000e-82 316.0
35 TraesCS4A01G158800 chr6B 82.700 526 85 5 1888 2410 12045229 12045751 3.280000e-126 462.0
36 TraesCS4A01G158800 chr6B 100.000 31 0 0 1437 1467 38710884 38710914 1.810000e-04 58.4
37 TraesCS4A01G158800 chr2B 79.567 323 42 21 2773 3085 485327581 485327273 4.720000e-50 209.0
38 TraesCS4A01G158800 chr6A 96.907 97 3 0 1 97 190572682 190572778 3.730000e-36 163.0
39 TraesCS4A01G158800 chr5B 96.842 95 3 0 1 95 56250440 56250346 4.820000e-35 159.0
40 TraesCS4A01G158800 chr4D 95.876 97 4 0 1 97 145940122 145940026 1.730000e-34 158.0
41 TraesCS4A01G158800 chr7A 80.500 200 35 3 2458 2655 140738461 140738658 2.900000e-32 150.0
42 TraesCS4A01G158800 chr7A 79.500 200 37 4 2458 2655 141877647 141877844 6.280000e-29 139.0
43 TraesCS4A01G158800 chr7A 79.000 200 38 3 2458 2655 141009587 141009784 2.920000e-27 134.0
44 TraesCS4A01G158800 chr7A 78.894 199 38 3 2459 2655 141286928 141287124 1.050000e-26 132.0
45 TraesCS4A01G158800 chr3D 79.577 142 29 0 2166 2307 441025528 441025387 8.240000e-18 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G158800 chr4A 329168098 329172750 4652 False 8593.00 8593 100.0000 1 4653 1 chr4A.!!$F1 4652
1 TraesCS4A01G158800 chr4A 398497423 398499301 1878 True 3195.00 3195 97.3460 2773 4653 1 chr4A.!!$R1 1880
2 TraesCS4A01G158800 chr4A 615184155 615184988 833 True 1203.00 1203 92.5880 2772 3617 1 chr4A.!!$R2 845
3 TraesCS4A01G158800 chr2A 176884447 176886328 1881 True 3164.00 3164 97.0280 2773 4653 1 chr2A.!!$R1 1880
4 TraesCS4A01G158800 chr2A 642251693 642253575 1882 True 3110.00 3110 96.4990 2772 4653 1 chr2A.!!$R2 1881
5 TraesCS4A01G158800 chr1B 549887979 549889857 1878 True 2398.00 2398 89.9060 2773 4653 1 chr1B.!!$R1 1880
6 TraesCS4A01G158800 chr7D 383894511 383895913 1402 False 1869.00 1869 90.6670 1242 2660 1 chr7D.!!$F1 1418
7 TraesCS4A01G158800 chr7D 535784921 535786005 1084 True 547.00 547 76.5770 2773 3839 1 chr7D.!!$R1 1066
8 TraesCS4A01G158800 chr1D 388608618 388611781 3163 True 858.50 1286 90.0795 1171 2655 2 chr1D.!!$R2 1484
9 TraesCS4A01G158800 chr7B 720467446 720469008 1562 False 949.00 1194 89.9905 1175 2652 2 chr7B.!!$F3 1477
10 TraesCS4A01G158800 chr7B 65349470 65350728 1258 False 569.50 667 86.3760 107 1161 2 chr7B.!!$F2 1054
11 TraesCS4A01G158800 chr7B 198147199 198147970 771 True 377.00 377 76.1960 3221 3990 1 chr7B.!!$R1 769
12 TraesCS4A01G158800 chr6D 438885868 438886552 684 True 1044.00 1044 94.1940 2773 3458 1 chr6D.!!$R2 685
13 TraesCS4A01G158800 chr1A 507944691 507947361 2670 True 453.55 821 83.5480 1225 2392 2 chr1A.!!$R1 1167
14 TraesCS4A01G158800 chr3A 581852443 581853323 880 False 552.00 769 89.5850 2769 4653 2 chr3A.!!$F3 1884
15 TraesCS4A01G158800 chr2D 484783524 484784684 1160 True 424.00 532 86.1365 1913 2410 2 chr2D.!!$R1 497
16 TraesCS4A01G158800 chr6B 12045229 12045751 522 False 462.00 462 82.7000 1888 2410 1 chr6B.!!$F1 522

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
323 346 0.030603 ACCCCCTCTCTTCCCATCTC 60.031 60.0 0.00 0.00 0.00 2.75 F
653 677 0.110486 GGCAACTTGGGACTTGGAGA 59.890 55.0 0.00 0.00 0.00 3.71 F
816 1041 0.172803 ACAGATTCGTCTACACGGGC 59.827 55.0 0.00 0.00 46.70 6.13 F
2513 6872 0.108567 TTTACTATGGCGCGCAGACA 60.109 50.0 34.42 22.28 45.56 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1176 1415 0.101219 GGCCGCATGTCCTCAAAATC 59.899 55.000 0.00 0.00 0.00 2.17 R
1906 3851 0.253630 ATCTTCCCCCACAAGCCCTA 60.254 55.000 0.00 0.00 0.00 3.53 R
2707 7067 0.245539 TTACCTCACGTGCTAGCCAC 59.754 55.000 13.29 9.58 41.15 5.01 R
4438 8896 1.675641 GGGCTCCACGCAGATGTTT 60.676 57.895 0.00 0.00 41.67 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.899427 AATGTAGAATCAATCACGATCAATCT 57.101 30.769 0.00 0.00 0.00 2.40
26 27 7.936950 TGTAGAATCAATCACGATCAATCTC 57.063 36.000 0.00 0.00 0.00 2.75
27 28 7.720442 TGTAGAATCAATCACGATCAATCTCT 58.280 34.615 0.00 0.00 0.00 3.10
28 29 8.850156 TGTAGAATCAATCACGATCAATCTCTA 58.150 33.333 0.00 0.00 0.00 2.43
29 30 9.684448 GTAGAATCAATCACGATCAATCTCTAA 57.316 33.333 0.00 0.00 0.00 2.10
31 32 9.258826 AGAATCAATCACGATCAATCTCTAAAG 57.741 33.333 0.00 0.00 0.00 1.85
32 33 9.254133 GAATCAATCACGATCAATCTCTAAAGA 57.746 33.333 0.00 0.00 35.54 2.52
33 34 9.775854 AATCAATCACGATCAATCTCTAAAGAT 57.224 29.630 0.00 0.00 44.37 2.40
34 35 8.809159 TCAATCACGATCAATCTCTAAAGATC 57.191 34.615 0.00 0.00 41.54 2.75
35 36 8.416329 TCAATCACGATCAATCTCTAAAGATCA 58.584 33.333 0.00 0.00 41.54 2.92
36 37 9.038803 CAATCACGATCAATCTCTAAAGATCAA 57.961 33.333 0.00 0.00 41.54 2.57
37 38 9.605275 AATCACGATCAATCTCTAAAGATCAAA 57.395 29.630 0.00 0.00 41.54 2.69
38 39 9.775854 ATCACGATCAATCTCTAAAGATCAAAT 57.224 29.630 0.00 0.00 41.54 2.32
39 40 9.254133 TCACGATCAATCTCTAAAGATCAAATC 57.746 33.333 0.00 0.00 41.54 2.17
40 41 9.258826 CACGATCAATCTCTAAAGATCAAATCT 57.741 33.333 0.00 0.00 41.54 2.40
76 77 8.437360 ACATTATCTTAAATCGCTCAATCACA 57.563 30.769 0.00 0.00 0.00 3.58
77 78 9.060347 ACATTATCTTAAATCGCTCAATCACAT 57.940 29.630 0.00 0.00 0.00 3.21
78 79 9.888878 CATTATCTTAAATCGCTCAATCACATT 57.111 29.630 0.00 0.00 0.00 2.71
87 88 9.941664 AAATCGCTCAATCACATTAATTAGAAG 57.058 29.630 0.00 0.00 0.00 2.85
88 89 8.893219 ATCGCTCAATCACATTAATTAGAAGA 57.107 30.769 0.00 0.00 0.00 2.87
89 90 8.131455 TCGCTCAATCACATTAATTAGAAGAC 57.869 34.615 0.00 0.00 0.00 3.01
90 91 7.763985 TCGCTCAATCACATTAATTAGAAGACA 59.236 33.333 0.00 0.00 0.00 3.41
91 92 8.390354 CGCTCAATCACATTAATTAGAAGACAA 58.610 33.333 0.00 0.00 0.00 3.18
122 123 9.406113 TCTCTATCTCTACTACCTAAAACAACC 57.594 37.037 0.00 0.00 0.00 3.77
123 124 9.186837 CTCTATCTCTACTACCTAAAACAACCA 57.813 37.037 0.00 0.00 0.00 3.67
128 129 8.117956 TCTCTACTACCTAAAACAACCATAGGA 58.882 37.037 5.14 0.00 38.81 2.94
129 130 8.849543 TCTACTACCTAAAACAACCATAGGAT 57.150 34.615 5.14 0.00 38.81 3.24
130 131 8.921205 TCTACTACCTAAAACAACCATAGGATC 58.079 37.037 5.14 0.00 38.81 3.36
132 133 4.777463 ACCTAAAACAACCATAGGATCCG 58.223 43.478 5.98 0.00 38.81 4.18
133 134 4.226620 ACCTAAAACAACCATAGGATCCGT 59.773 41.667 5.98 0.00 38.81 4.69
134 135 4.814771 CCTAAAACAACCATAGGATCCGTC 59.185 45.833 5.98 0.00 38.81 4.79
135 136 4.569719 AAAACAACCATAGGATCCGTCT 57.430 40.909 5.98 0.00 0.00 4.18
136 137 3.821421 AACAACCATAGGATCCGTCTC 57.179 47.619 5.98 0.00 0.00 3.36
137 138 2.040178 ACAACCATAGGATCCGTCTCC 58.960 52.381 5.98 0.00 35.37 3.71
138 139 1.344763 CAACCATAGGATCCGTCTCCC 59.655 57.143 5.98 0.00 35.79 4.30
139 140 0.539901 ACCATAGGATCCGTCTCCCG 60.540 60.000 5.98 0.00 35.79 5.14
145 146 1.145325 AGGATCCGTCTCCCGTCTTAT 59.855 52.381 5.98 0.00 35.79 1.73
147 148 0.674534 ATCCGTCTCCCGTCTTATGC 59.325 55.000 0.00 0.00 33.66 3.14
152 153 1.299165 CTCCCGTCTTATGCCGTCG 60.299 63.158 0.00 0.00 0.00 5.12
180 181 1.305718 GCTCTCCTCTCCCACACCT 60.306 63.158 0.00 0.00 0.00 4.00
184 185 1.431633 TCTCCTCTCCCACACCTGTTA 59.568 52.381 0.00 0.00 0.00 2.41
185 186 2.158219 TCTCCTCTCCCACACCTGTTAA 60.158 50.000 0.00 0.00 0.00 2.01
190 191 1.142060 CTCCCACACCTGTTAACACCA 59.858 52.381 3.59 0.00 0.00 4.17
235 237 0.186386 CCCACCCGACCTATCTCTCT 59.814 60.000 0.00 0.00 0.00 3.10
255 278 2.215979 TCTAGCCCTACCTCTCTCCT 57.784 55.000 0.00 0.00 0.00 3.69
256 279 3.364006 TCTAGCCCTACCTCTCTCCTA 57.636 52.381 0.00 0.00 0.00 2.94
288 311 3.744426 TCGACGATCGACATAGCAGATAA 59.256 43.478 24.34 0.00 44.82 1.75
295 318 5.576447 TCGACATAGCAGATAACACTCAA 57.424 39.130 0.00 0.00 0.00 3.02
304 327 2.236146 AGATAACACTCAACATCGCCCA 59.764 45.455 0.00 0.00 0.00 5.36
323 346 0.030603 ACCCCCTCTCTTCCCATCTC 60.031 60.000 0.00 0.00 0.00 2.75
362 385 2.825264 CCTCTTCCAGATCGGCCC 59.175 66.667 0.00 0.00 33.14 5.80
365 388 4.241555 CTTCCAGATCGGCCCCGG 62.242 72.222 6.90 0.00 40.25 5.73
501 524 0.172578 CTTGTATCGTCAGGCCGTCA 59.827 55.000 0.00 0.00 0.00 4.35
541 565 1.304713 TACACACGGGTCCTCTCCC 60.305 63.158 0.00 0.00 43.78 4.30
555 579 0.628522 TCTCCCTCTCCCTCTCAGTG 59.371 60.000 0.00 0.00 0.00 3.66
556 580 0.334676 CTCCCTCTCCCTCTCAGTGT 59.665 60.000 0.00 0.00 0.00 3.55
565 589 1.486726 CCCTCTCAGTGTGTATTCCCC 59.513 57.143 0.00 0.00 0.00 4.81
573 597 3.264450 CAGTGTGTATTCCCCTTCCTCTT 59.736 47.826 0.00 0.00 0.00 2.85
584 608 2.585432 CCCTTCCTCTTCCCCCAAATTA 59.415 50.000 0.00 0.00 0.00 1.40
591 615 3.696548 CTCTTCCCCCAAATTAAGACTGC 59.303 47.826 0.00 0.00 0.00 4.40
602 626 6.318648 CCAAATTAAGACTGCTATGTTGCCTA 59.681 38.462 0.00 0.00 0.00 3.93
630 654 0.390472 CTTCAGGTCTTCAGGTCGGC 60.390 60.000 0.00 0.00 0.00 5.54
631 655 1.118965 TTCAGGTCTTCAGGTCGGCA 61.119 55.000 0.00 0.00 0.00 5.69
647 671 2.281761 CAGCGGCAACTTGGGACT 60.282 61.111 1.45 0.00 0.00 3.85
650 674 2.919494 GCGGCAACTTGGGACTTGG 61.919 63.158 0.00 0.00 0.00 3.61
651 675 1.228124 CGGCAACTTGGGACTTGGA 60.228 57.895 0.00 0.00 0.00 3.53
652 676 1.237285 CGGCAACTTGGGACTTGGAG 61.237 60.000 0.00 0.00 0.00 3.86
653 677 0.110486 GGCAACTTGGGACTTGGAGA 59.890 55.000 0.00 0.00 0.00 3.71
654 678 1.528129 GCAACTTGGGACTTGGAGAG 58.472 55.000 0.00 0.00 0.00 3.20
655 679 1.202818 GCAACTTGGGACTTGGAGAGT 60.203 52.381 0.00 0.00 42.70 3.24
656 680 2.038557 GCAACTTGGGACTTGGAGAGTA 59.961 50.000 0.00 0.00 39.19 2.59
657 681 3.866449 GCAACTTGGGACTTGGAGAGTAG 60.866 52.174 0.00 0.00 39.19 2.57
658 682 1.903183 ACTTGGGACTTGGAGAGTAGC 59.097 52.381 0.00 0.00 39.19 3.58
659 683 2.183679 CTTGGGACTTGGAGAGTAGCT 58.816 52.381 0.00 0.00 39.19 3.32
676 700 1.895131 AGCTTTTTGTGGTAGGGCATG 59.105 47.619 0.00 0.00 0.00 4.06
678 702 1.617850 CTTTTTGTGGTAGGGCATGCA 59.382 47.619 21.36 0.00 0.00 3.96
681 705 0.178978 TTGTGGTAGGGCATGCACAA 60.179 50.000 24.51 17.98 0.00 3.33
720 744 0.179045 GCTGTCCAGGGTATGCGATT 60.179 55.000 0.00 0.00 0.00 3.34
780 1005 2.222027 CAGACGCCCTTTTGAGTTTCT 58.778 47.619 0.00 0.00 0.00 2.52
816 1041 0.172803 ACAGATTCGTCTACACGGGC 59.827 55.000 0.00 0.00 46.70 6.13
834 1059 0.813821 GCCACTGAAGCAGGGAATTC 59.186 55.000 0.00 0.00 36.97 2.17
843 1068 1.076485 CAGGGAATTCAGGCCAGGG 60.076 63.158 5.01 0.00 0.00 4.45
845 1070 2.316586 GGGAATTCAGGCCAGGGGA 61.317 63.158 5.01 0.00 0.00 4.81
848 1073 0.552848 GAATTCAGGCCAGGGGATCA 59.447 55.000 5.01 0.00 0.00 2.92
851 1076 1.009997 TTCAGGCCAGGGGATCAATT 58.990 50.000 5.01 0.00 0.00 2.32
852 1077 1.009997 TCAGGCCAGGGGATCAATTT 58.990 50.000 5.01 0.00 0.00 1.82
853 1078 1.117150 CAGGCCAGGGGATCAATTTG 58.883 55.000 5.01 0.00 0.00 2.32
854 1079 0.712380 AGGCCAGGGGATCAATTTGT 59.288 50.000 5.01 0.00 0.00 2.83
855 1080 1.929494 AGGCCAGGGGATCAATTTGTA 59.071 47.619 5.01 0.00 0.00 2.41
856 1081 2.314549 AGGCCAGGGGATCAATTTGTAA 59.685 45.455 5.01 0.00 0.00 2.41
857 1082 3.051880 AGGCCAGGGGATCAATTTGTAAT 60.052 43.478 5.01 0.00 0.00 1.89
858 1083 3.321968 GGCCAGGGGATCAATTTGTAATC 59.678 47.826 0.00 0.00 0.00 1.75
859 1084 3.960102 GCCAGGGGATCAATTTGTAATCA 59.040 43.478 0.00 0.00 0.00 2.57
860 1085 4.202151 GCCAGGGGATCAATTTGTAATCAC 60.202 45.833 0.00 0.00 0.00 3.06
861 1086 4.036734 CCAGGGGATCAATTTGTAATCACG 59.963 45.833 0.00 0.00 0.00 4.35
862 1087 4.036734 CAGGGGATCAATTTGTAATCACGG 59.963 45.833 0.00 0.00 0.00 4.94
863 1088 3.951680 GGGGATCAATTTGTAATCACGGT 59.048 43.478 0.00 0.00 0.00 4.83
864 1089 4.401202 GGGGATCAATTTGTAATCACGGTT 59.599 41.667 0.00 0.00 0.00 4.44
865 1090 5.591067 GGGGATCAATTTGTAATCACGGTTA 59.409 40.000 0.00 0.00 0.00 2.85
866 1091 6.095720 GGGGATCAATTTGTAATCACGGTTAA 59.904 38.462 0.00 0.00 0.00 2.01
867 1092 7.363094 GGGGATCAATTTGTAATCACGGTTAAA 60.363 37.037 0.00 0.00 0.00 1.52
868 1093 7.486870 GGGATCAATTTGTAATCACGGTTAAAC 59.513 37.037 0.00 0.00 0.00 2.01
869 1094 8.024285 GGATCAATTTGTAATCACGGTTAAACA 58.976 33.333 0.00 0.00 0.00 2.83
870 1095 9.400638 GATCAATTTGTAATCACGGTTAAACAA 57.599 29.630 0.00 0.00 0.00 2.83
871 1096 9.751542 ATCAATTTGTAATCACGGTTAAACAAA 57.248 25.926 9.15 9.15 40.07 2.83
913 1138 2.033424 GGCTAACTGAATTCGATTGGGC 59.967 50.000 12.98 12.98 0.00 5.36
956 1181 2.551270 ACTAGACCTCAATGGCTCCAA 58.449 47.619 0.00 0.00 40.22 3.53
978 1203 6.352737 CCAACAGTATGGACCTGTAGGTATTT 60.353 42.308 3.02 0.00 44.83 1.40
994 1219 9.391006 TGTAGGTATTTGATGTTTTGATCTACC 57.609 33.333 0.00 0.00 0.00 3.18
1033 1258 8.368668 CAGGTATAACTTAGGCTAAGCAATACT 58.631 37.037 32.34 24.06 39.39 2.12
1048 1273 7.539034 AAGCAATACTACTTTCATTGGGTTT 57.461 32.000 0.00 0.00 31.68 3.27
1070 1295 9.124807 GGTTTTCAGTACTTGTATTTAATGTGC 57.875 33.333 0.00 0.00 0.00 4.57
1076 1301 8.108172 CAGTACTTGTATTTAATGTGCGTACAG 58.892 37.037 12.93 0.00 40.79 2.74
1078 1303 7.290857 ACTTGTATTTAATGTGCGTACAGAG 57.709 36.000 12.93 1.83 40.79 3.35
1134 1373 4.766373 TCTGAATGAATAGTGCCTGCAAAA 59.234 37.500 0.00 0.00 0.00 2.44
1161 1400 4.327087 GCACCATGCTACTAAAATGTTTGC 59.673 41.667 0.00 0.00 40.96 3.68
1162 1401 5.468592 CACCATGCTACTAAAATGTTTGCA 58.531 37.500 0.00 0.00 34.62 4.08
1163 1402 5.925397 CACCATGCTACTAAAATGTTTGCAA 59.075 36.000 0.00 0.00 34.15 4.08
1164 1403 5.925969 ACCATGCTACTAAAATGTTTGCAAC 59.074 36.000 0.00 0.00 34.15 4.17
1165 1404 5.925397 CCATGCTACTAAAATGTTTGCAACA 59.075 36.000 0.00 0.88 46.94 3.33
1176 1415 2.227626 TGTTTGCAACATATGGACACGG 59.772 45.455 7.80 0.00 33.20 4.94
1198 1437 3.918253 TTGAGGACATGCGGCCACC 62.918 63.158 2.24 0.00 0.00 4.61
1213 1452 1.883084 CACCCGCTGCCGTTATCTC 60.883 63.158 0.00 0.00 0.00 2.75
1214 1453 2.355986 ACCCGCTGCCGTTATCTCA 61.356 57.895 0.00 0.00 0.00 3.27
1221 1460 0.869880 TGCCGTTATCTCATGCGTCG 60.870 55.000 0.00 0.00 0.00 5.12
1268 1508 1.289160 TAGCATCTTGCCTCCCAACT 58.711 50.000 0.00 0.00 46.52 3.16
1278 1518 2.307392 TGCCTCCCAACTTGCAATACTA 59.693 45.455 0.00 0.00 0.00 1.82
1286 1526 4.466828 CAACTTGCAATACTACACAGTGC 58.533 43.478 0.00 0.00 36.14 4.40
1367 1607 2.226330 GGCCCGCACACATTTATCATA 58.774 47.619 0.00 0.00 0.00 2.15
1393 1633 5.019785 GGAATACATCCTTGTCCGTTAGT 57.980 43.478 0.00 0.00 45.56 2.24
1399 1639 4.020573 ACATCCTTGTCCGTTAGTGATTCA 60.021 41.667 0.00 0.00 0.00 2.57
1400 1640 4.819105 TCCTTGTCCGTTAGTGATTCAT 57.181 40.909 0.00 0.00 0.00 2.57
1403 1643 4.383118 CCTTGTCCGTTAGTGATTCATCCT 60.383 45.833 0.00 0.00 0.00 3.24
1407 1647 2.481276 CCGTTAGTGATTCATCCTGCGA 60.481 50.000 0.00 0.00 0.00 5.10
1516 3341 3.747579 AGGGGAGCTGGGCAATGG 61.748 66.667 0.00 0.00 0.00 3.16
1560 3393 2.411628 ACACTGCTGTTTGGTGTACA 57.588 45.000 0.00 0.00 41.56 2.90
1561 3394 2.014128 ACACTGCTGTTTGGTGTACAC 58.986 47.619 18.01 18.01 41.56 2.90
1562 3395 2.013400 CACTGCTGTTTGGTGTACACA 58.987 47.619 26.51 10.77 0.00 3.72
1563 3396 2.014128 ACTGCTGTTTGGTGTACACAC 58.986 47.619 26.51 16.69 45.72 3.82
1576 3409 2.168728 TGTACACACAGGCACAGTTACA 59.831 45.455 0.00 0.00 0.00 2.41
1785 3727 2.016905 ACGCAGAGGGGATAAGCTAT 57.983 50.000 0.00 0.00 0.00 2.97
1906 3851 1.299541 CGCAGCCGGAATGATACTTT 58.700 50.000 5.05 0.00 0.00 2.66
1909 3854 2.808543 GCAGCCGGAATGATACTTTAGG 59.191 50.000 5.05 0.00 0.00 2.69
1910 3855 3.403038 CAGCCGGAATGATACTTTAGGG 58.597 50.000 5.05 0.00 0.00 3.53
1918 3863 3.644966 TGATACTTTAGGGCTTGTGGG 57.355 47.619 0.00 0.00 0.00 4.61
2009 3954 3.081804 TCTGCTCGAGAAGTGTGACATA 58.918 45.455 20.16 0.00 0.00 2.29
2042 3987 1.995484 CGCGTGTGAAATCAGATGTCT 59.005 47.619 0.00 0.00 0.00 3.41
2050 3995 0.904649 AATCAGATGTCTCCACCGCA 59.095 50.000 0.00 0.00 0.00 5.69
2082 4027 1.831106 TGCATGTACTCGTTCTCCCAT 59.169 47.619 0.00 0.00 0.00 4.00
2085 4030 3.689649 GCATGTACTCGTTCTCCCATTTT 59.310 43.478 0.00 0.00 0.00 1.82
2086 4031 4.156008 GCATGTACTCGTTCTCCCATTTTT 59.844 41.667 0.00 0.00 0.00 1.94
2134 4079 3.436704 CAGAAAGAAAGATTAGCACGCCA 59.563 43.478 0.00 0.00 0.00 5.69
2154 4099 3.765511 CCATGGAGAAGAAGGCATGAAAA 59.234 43.478 5.56 0.00 0.00 2.29
2178 4123 8.950007 AAGATTTAGAAAAACTTACCCCATGA 57.050 30.769 0.00 0.00 0.00 3.07
2179 4124 9.547279 AAGATTTAGAAAAACTTACCCCATGAT 57.453 29.630 0.00 0.00 0.00 2.45
2205 4152 0.984995 ACTTGTAGAAGTGCCTCCCC 59.015 55.000 4.15 0.00 41.12 4.81
2219 4834 0.392595 CTCCCCGGGTTTAGTTCAGC 60.393 60.000 21.85 0.00 0.00 4.26
2247 4862 1.411246 ACAAACCAGAGCACGTAGTCA 59.589 47.619 0.00 0.00 41.61 3.41
2290 4905 1.383803 AGAGGGAGTGGAGGCATCC 60.384 63.158 11.34 11.34 46.87 3.51
2307 4922 2.390599 CCGATTGCTCGTGTGGTGG 61.391 63.158 0.00 0.00 43.49 4.61
2308 4923 1.374125 CGATTGCTCGTGTGGTGGA 60.374 57.895 0.00 0.00 40.07 4.02
2314 4929 1.298859 GCTCGTGTGGTGGAATGGAC 61.299 60.000 0.00 0.00 0.00 4.02
2410 6769 1.451028 GAGCAGCTTCGAATGGCCT 60.451 57.895 3.32 0.00 0.00 5.19
2417 6776 0.322456 CTTCGAATGGCCTTGTCCCA 60.322 55.000 3.32 0.00 36.66 4.37
2429 6788 2.491693 CCTTGTCCCACGCAATAAATGT 59.508 45.455 0.00 0.00 0.00 2.71
2432 6791 3.417101 TGTCCCACGCAATAAATGTCTT 58.583 40.909 0.00 0.00 0.00 3.01
2444 6803 1.442769 AATGTCTTTGCGCATCTCGT 58.557 45.000 12.75 0.81 41.07 4.18
2478 6837 1.825474 AGCTAGCCGTTGTCACTACAT 59.175 47.619 12.13 0.00 34.97 2.29
2483 6842 1.795768 CCGTTGTCACTACATGCTGT 58.204 50.000 0.00 0.00 34.97 4.40
2487 6846 3.433274 CGTTGTCACTACATGCTGTCATT 59.567 43.478 0.00 0.00 34.97 2.57
2500 6859 3.245087 TGCTGTCATTTGGGCCTTTACTA 60.245 43.478 4.53 0.00 0.00 1.82
2513 6872 0.108567 TTTACTATGGCGCGCAGACA 60.109 50.000 34.42 22.28 45.56 3.41
2526 6885 0.797249 GCAGACACGAATACGAGCGT 60.797 55.000 0.00 0.00 42.66 5.07
2538 6897 1.100510 ACGAGCGTTATACCAGCTGA 58.899 50.000 17.39 0.00 41.84 4.26
2543 6902 4.617959 GAGCGTTATACCAGCTGATGTAA 58.382 43.478 17.39 3.72 41.84 2.41
2554 6914 1.414181 GCTGATGTAAGCTGCTAGGGA 59.586 52.381 0.90 0.00 44.16 4.20
2556 6916 3.682718 GCTGATGTAAGCTGCTAGGGAAA 60.683 47.826 0.90 0.00 44.16 3.13
2565 6925 5.546621 AGCTGCTAGGGAAAATTATACGA 57.453 39.130 0.00 0.00 0.00 3.43
2569 6929 6.204882 GCTGCTAGGGAAAATTATACGACAAT 59.795 38.462 0.00 0.00 0.00 2.71
2665 7025 9.825972 GCACACGCAATTTATCATATACTTATT 57.174 29.630 0.00 0.00 38.36 1.40
2689 7049 8.825667 TTTCTTAGATAAAACAAATGTTGGGC 57.174 30.769 0.00 0.00 38.44 5.36
2690 7050 6.616947 TCTTAGATAAAACAAATGTTGGGCG 58.383 36.000 0.00 0.00 38.44 6.13
2691 7051 4.864704 AGATAAAACAAATGTTGGGCGT 57.135 36.364 0.00 0.00 38.44 5.68
2692 7052 5.968528 AGATAAAACAAATGTTGGGCGTA 57.031 34.783 0.00 0.00 38.44 4.42
2693 7053 5.705902 AGATAAAACAAATGTTGGGCGTAC 58.294 37.500 0.00 0.00 38.44 3.67
2694 7054 3.802948 AAAACAAATGTTGGGCGTACA 57.197 38.095 0.00 0.00 38.44 2.90
2695 7055 4.329462 AAAACAAATGTTGGGCGTACAT 57.671 36.364 0.00 0.00 38.44 2.29
2696 7056 4.329462 AAACAAATGTTGGGCGTACATT 57.671 36.364 9.27 9.27 45.49 2.71
2697 7057 3.296322 ACAAATGTTGGGCGTACATTG 57.704 42.857 14.13 11.29 43.44 2.82
2698 7058 2.029470 ACAAATGTTGGGCGTACATTGG 60.029 45.455 14.13 13.65 43.44 3.16
2699 7059 2.208132 AATGTTGGGCGTACATTGGA 57.792 45.000 13.04 0.00 42.82 3.53
2700 7060 2.435372 ATGTTGGGCGTACATTGGAT 57.565 45.000 0.00 0.00 32.48 3.41
2701 7061 2.208132 TGTTGGGCGTACATTGGATT 57.792 45.000 0.00 0.00 0.00 3.01
2702 7062 1.815613 TGTTGGGCGTACATTGGATTG 59.184 47.619 0.00 0.00 0.00 2.67
2703 7063 1.816224 GTTGGGCGTACATTGGATTGT 59.184 47.619 0.00 0.00 0.00 2.71
2704 7064 3.011119 GTTGGGCGTACATTGGATTGTA 58.989 45.455 0.00 0.00 0.00 2.41
2705 7065 3.569194 TGGGCGTACATTGGATTGTAT 57.431 42.857 0.00 0.00 34.76 2.29
2706 7066 4.691326 TGGGCGTACATTGGATTGTATA 57.309 40.909 0.00 0.00 34.76 1.47
2707 7067 4.637276 TGGGCGTACATTGGATTGTATAG 58.363 43.478 0.00 0.00 34.76 1.31
2708 7068 4.101898 TGGGCGTACATTGGATTGTATAGT 59.898 41.667 0.00 0.00 34.76 2.12
2709 7069 4.451096 GGGCGTACATTGGATTGTATAGTG 59.549 45.833 0.00 0.00 34.76 2.74
2710 7070 4.451096 GGCGTACATTGGATTGTATAGTGG 59.549 45.833 0.00 0.00 34.76 4.00
2711 7071 4.084013 GCGTACATTGGATTGTATAGTGGC 60.084 45.833 0.00 0.00 34.76 5.01
2712 7072 5.297547 CGTACATTGGATTGTATAGTGGCT 58.702 41.667 0.00 0.00 34.76 4.75
2713 7073 6.452242 CGTACATTGGATTGTATAGTGGCTA 58.548 40.000 0.00 0.00 34.76 3.93
2714 7074 6.586463 CGTACATTGGATTGTATAGTGGCTAG 59.414 42.308 0.00 0.00 34.76 3.42
2715 7075 5.308825 ACATTGGATTGTATAGTGGCTAGC 58.691 41.667 6.04 6.04 0.00 3.42
2716 7076 5.163205 ACATTGGATTGTATAGTGGCTAGCA 60.163 40.000 18.24 0.00 0.00 3.49
2717 7077 4.336889 TGGATTGTATAGTGGCTAGCAC 57.663 45.455 18.24 12.66 0.00 4.40
2718 7078 3.243737 TGGATTGTATAGTGGCTAGCACG 60.244 47.826 18.24 0.00 0.00 5.34
2719 7079 3.243771 GGATTGTATAGTGGCTAGCACGT 60.244 47.826 18.24 9.55 0.00 4.49
2720 7080 2.863401 TGTATAGTGGCTAGCACGTG 57.137 50.000 18.24 12.28 0.00 4.49
2721 7081 2.371306 TGTATAGTGGCTAGCACGTGA 58.629 47.619 22.23 0.00 0.00 4.35
2722 7082 2.357952 TGTATAGTGGCTAGCACGTGAG 59.642 50.000 22.23 10.06 0.00 3.51
2723 7083 0.747255 ATAGTGGCTAGCACGTGAGG 59.253 55.000 22.23 9.08 0.00 3.86
2724 7084 0.611062 TAGTGGCTAGCACGTGAGGT 60.611 55.000 22.23 5.14 0.00 3.85
2725 7085 0.611062 AGTGGCTAGCACGTGAGGTA 60.611 55.000 22.23 6.14 0.00 3.08
2726 7086 0.245539 GTGGCTAGCACGTGAGGTAA 59.754 55.000 22.23 0.00 0.00 2.85
2727 7087 1.134788 GTGGCTAGCACGTGAGGTAAT 60.135 52.381 22.23 0.00 0.00 1.89
2728 7088 2.100252 GTGGCTAGCACGTGAGGTAATA 59.900 50.000 22.23 0.55 0.00 0.98
2729 7089 2.761767 TGGCTAGCACGTGAGGTAATAA 59.238 45.455 22.23 0.00 0.00 1.40
2730 7090 3.121544 GGCTAGCACGTGAGGTAATAAC 58.878 50.000 22.23 0.00 0.00 1.89
2731 7091 3.429822 GGCTAGCACGTGAGGTAATAACA 60.430 47.826 22.23 0.00 0.00 2.41
2732 7092 4.178540 GCTAGCACGTGAGGTAATAACAA 58.821 43.478 22.23 0.00 0.00 2.83
2733 7093 4.809426 GCTAGCACGTGAGGTAATAACAAT 59.191 41.667 22.23 0.00 0.00 2.71
2734 7094 5.293569 GCTAGCACGTGAGGTAATAACAATT 59.706 40.000 22.23 0.00 0.00 2.32
2735 7095 5.796350 AGCACGTGAGGTAATAACAATTC 57.204 39.130 22.23 0.00 0.00 2.17
2736 7096 5.488341 AGCACGTGAGGTAATAACAATTCT 58.512 37.500 22.23 0.00 0.00 2.40
2737 7097 6.636705 AGCACGTGAGGTAATAACAATTCTA 58.363 36.000 22.23 0.00 0.00 2.10
2738 7098 6.534079 AGCACGTGAGGTAATAACAATTCTAC 59.466 38.462 22.23 0.00 0.00 2.59
2739 7099 6.238022 GCACGTGAGGTAATAACAATTCTACC 60.238 42.308 22.23 0.00 35.08 3.18
2740 7100 7.039882 CACGTGAGGTAATAACAATTCTACCT 58.960 38.462 10.90 0.00 45.45 3.08
2741 7101 7.548075 CACGTGAGGTAATAACAATTCTACCTT 59.452 37.037 10.90 0.00 43.34 3.50
2742 7102 8.752187 ACGTGAGGTAATAACAATTCTACCTTA 58.248 33.333 1.39 0.00 43.34 2.69
2743 7103 9.590451 CGTGAGGTAATAACAATTCTACCTTAA 57.410 33.333 1.39 0.00 43.34 1.85
2751 7111 8.788325 ATAACAATTCTACCTTAATATCGGCC 57.212 34.615 0.00 0.00 0.00 6.13
2752 7112 5.557866 ACAATTCTACCTTAATATCGGCCC 58.442 41.667 0.00 0.00 0.00 5.80
2753 7113 5.072600 ACAATTCTACCTTAATATCGGCCCA 59.927 40.000 0.00 0.00 0.00 5.36
2754 7114 6.180472 CAATTCTACCTTAATATCGGCCCAT 58.820 40.000 0.00 0.00 0.00 4.00
2755 7115 7.037873 ACAATTCTACCTTAATATCGGCCCATA 60.038 37.037 0.00 0.00 0.00 2.74
2756 7116 5.927281 TCTACCTTAATATCGGCCCATAC 57.073 43.478 0.00 0.00 0.00 2.39
2757 7117 3.604875 ACCTTAATATCGGCCCATACG 57.395 47.619 0.00 0.00 0.00 3.06
2758 7118 2.901839 ACCTTAATATCGGCCCATACGT 59.098 45.455 0.00 0.00 0.00 3.57
2759 7119 4.088634 ACCTTAATATCGGCCCATACGTA 58.911 43.478 0.00 0.00 0.00 3.57
2760 7120 4.713321 ACCTTAATATCGGCCCATACGTAT 59.287 41.667 1.14 1.14 0.00 3.06
2761 7121 5.893255 ACCTTAATATCGGCCCATACGTATA 59.107 40.000 7.96 0.00 0.00 1.47
2762 7122 6.040166 ACCTTAATATCGGCCCATACGTATAG 59.960 42.308 7.96 0.08 0.00 1.31
2763 7123 6.040166 CCTTAATATCGGCCCATACGTATAGT 59.960 42.308 7.96 0.00 0.00 2.12
2764 7124 5.927281 AATATCGGCCCATACGTATAGTT 57.073 39.130 7.96 0.00 0.00 2.24
2765 7125 5.927281 ATATCGGCCCATACGTATAGTTT 57.073 39.130 7.96 0.00 0.00 2.66
2766 7126 3.648339 TCGGCCCATACGTATAGTTTC 57.352 47.619 7.96 0.00 0.00 2.78
2767 7127 2.957680 TCGGCCCATACGTATAGTTTCA 59.042 45.455 7.96 0.00 0.00 2.69
2768 7128 3.384146 TCGGCCCATACGTATAGTTTCAA 59.616 43.478 7.96 0.00 0.00 2.69
2769 7129 3.739300 CGGCCCATACGTATAGTTTCAAG 59.261 47.826 7.96 0.00 0.00 3.02
2770 7130 4.500205 CGGCCCATACGTATAGTTTCAAGA 60.500 45.833 7.96 0.00 0.00 3.02
2889 7251 4.393680 TGCGGATTCGTTTAGCTACAAAAT 59.606 37.500 0.00 0.00 38.89 1.82
2959 7322 5.676079 GCCGTGTATGCATTTGTATCTTTGT 60.676 40.000 3.54 0.00 0.00 2.83
3085 7452 0.176680 GTGCACCATGGAGAGACGAT 59.823 55.000 21.47 0.00 0.00 3.73
3171 7547 4.415783 GGCTTGGACCAAACCGAT 57.584 55.556 10.89 0.00 0.00 4.18
3248 7630 1.831106 TGGCGAGTGGATAGTCACATT 59.169 47.619 0.00 0.00 39.93 2.71
3318 7702 8.391075 TCCTCGATTTCTTGTTGTATTTCTTT 57.609 30.769 0.00 0.00 0.00 2.52
3617 8015 2.523412 ATGATGCATGGCAGGGGC 60.523 61.111 2.46 1.08 43.65 5.80
3657 8055 3.132646 TGGAAAGCTTGCAAATGACAACT 59.867 39.130 6.80 0.00 0.00 3.16
3877 8305 9.283768 TGTGTGACTATATGATGAACAAGTTTT 57.716 29.630 0.00 0.00 0.00 2.43
4023 8451 6.718454 ACTGAAGAAATTCACTGGATTGACAT 59.282 34.615 0.00 0.00 0.00 3.06
4061 8505 7.108841 AGAAGTTCAGTACAGAGTACAACAA 57.891 36.000 5.50 0.00 0.00 2.83
4072 8516 7.117241 ACAGAGTACAACAATGATTAACACG 57.883 36.000 0.00 0.00 0.00 4.49
4296 8754 1.754803 GGTCGATGTACTCCATGACCA 59.245 52.381 14.30 0.00 43.67 4.02
4351 8809 4.379243 CGCTGGTGCCTTCTCCGT 62.379 66.667 0.00 0.00 35.36 4.69
4438 8896 0.670706 CTAGCTGCGTCTGATGCCTA 59.329 55.000 18.51 12.20 0.00 3.93
4449 8907 2.093500 TCTGATGCCTAAACATCTGCGT 60.093 45.455 6.13 0.00 45.51 5.24
4540 8998 0.107643 TTGGAGATGGCAACGACACA 59.892 50.000 0.00 0.00 42.51 3.72
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 7.720442 AGAGATTGATCGTGATTGATTCTACA 58.280 34.615 0.00 0.00 0.00 2.74
5 6 9.258826 CTTTAGAGATTGATCGTGATTGATTCT 57.741 33.333 0.00 0.00 0.00 2.40
7 8 9.775854 ATCTTTAGAGATTGATCGTGATTGATT 57.224 29.630 0.00 0.00 39.63 2.57
8 9 9.421806 GATCTTTAGAGATTGATCGTGATTGAT 57.578 33.333 0.00 0.00 42.66 2.57
9 10 8.416329 TGATCTTTAGAGATTGATCGTGATTGA 58.584 33.333 0.00 0.00 42.66 2.57
10 11 8.585189 TGATCTTTAGAGATTGATCGTGATTG 57.415 34.615 0.00 0.00 42.66 2.67
11 12 9.605275 TTTGATCTTTAGAGATTGATCGTGATT 57.395 29.630 0.00 0.00 42.66 2.57
12 13 9.775854 ATTTGATCTTTAGAGATTGATCGTGAT 57.224 29.630 0.00 0.00 42.66 3.06
13 14 9.254133 GATTTGATCTTTAGAGATTGATCGTGA 57.746 33.333 0.00 0.00 42.66 4.35
14 15 9.258826 AGATTTGATCTTTAGAGATTGATCGTG 57.741 33.333 0.00 0.00 42.66 4.35
50 51 8.892723 TGTGATTGAGCGATTTAAGATAATGTT 58.107 29.630 0.00 0.00 0.00 2.71
51 52 8.437360 TGTGATTGAGCGATTTAAGATAATGT 57.563 30.769 0.00 0.00 0.00 2.71
52 53 9.888878 AATGTGATTGAGCGATTTAAGATAATG 57.111 29.630 0.00 0.00 0.00 1.90
61 62 9.941664 CTTCTAATTAATGTGATTGAGCGATTT 57.058 29.630 0.00 0.00 0.00 2.17
62 63 9.330063 TCTTCTAATTAATGTGATTGAGCGATT 57.670 29.630 0.00 0.00 0.00 3.34
63 64 8.768955 GTCTTCTAATTAATGTGATTGAGCGAT 58.231 33.333 0.00 0.00 0.00 4.58
64 65 7.763985 TGTCTTCTAATTAATGTGATTGAGCGA 59.236 33.333 0.00 0.00 0.00 4.93
65 66 7.909267 TGTCTTCTAATTAATGTGATTGAGCG 58.091 34.615 0.00 0.00 0.00 5.03
96 97 9.406113 GGTTGTTTTAGGTAGTAGAGATAGAGA 57.594 37.037 0.00 0.00 0.00 3.10
97 98 9.186837 TGGTTGTTTTAGGTAGTAGAGATAGAG 57.813 37.037 0.00 0.00 0.00 2.43
98 99 9.710818 ATGGTTGTTTTAGGTAGTAGAGATAGA 57.289 33.333 0.00 0.00 0.00 1.98
101 102 8.925338 CCTATGGTTGTTTTAGGTAGTAGAGAT 58.075 37.037 0.00 0.00 0.00 2.75
102 103 8.117956 TCCTATGGTTGTTTTAGGTAGTAGAGA 58.882 37.037 0.00 0.00 35.13 3.10
103 104 8.302515 TCCTATGGTTGTTTTAGGTAGTAGAG 57.697 38.462 0.00 0.00 35.13 2.43
104 105 8.849543 ATCCTATGGTTGTTTTAGGTAGTAGA 57.150 34.615 0.00 0.00 35.13 2.59
105 106 8.148999 GGATCCTATGGTTGTTTTAGGTAGTAG 58.851 40.741 3.84 0.00 35.13 2.57
112 113 5.671493 AGACGGATCCTATGGTTGTTTTAG 58.329 41.667 10.75 0.00 0.00 1.85
132 133 4.732106 CGGCATAAGACGGGAGAC 57.268 61.111 0.00 0.00 44.44 3.36
139 140 2.601763 ACGAAAATCGACGGCATAAGAC 59.398 45.455 6.78 0.00 43.74 3.01
152 153 2.456010 GAGAGGAGAGCGACGAAAATC 58.544 52.381 0.00 0.00 0.00 2.17
223 225 4.382386 AGGGCTAGAAGAGAGATAGGTC 57.618 50.000 0.00 0.00 0.00 3.85
235 237 2.504905 AGGAGAGAGGTAGGGCTAGAA 58.495 52.381 0.00 0.00 0.00 2.10
255 278 1.068541 CGATCGTCGATGCCCAGATTA 60.069 52.381 13.54 0.00 43.74 1.75
256 279 0.319040 CGATCGTCGATGCCCAGATT 60.319 55.000 13.54 0.00 43.74 2.40
278 301 4.747108 GCGATGTTGAGTGTTATCTGCTAT 59.253 41.667 0.00 0.00 0.00 2.97
279 302 4.112634 GCGATGTTGAGTGTTATCTGCTA 58.887 43.478 0.00 0.00 0.00 3.49
280 303 2.932614 GCGATGTTGAGTGTTATCTGCT 59.067 45.455 0.00 0.00 0.00 4.24
281 304 2.030946 GGCGATGTTGAGTGTTATCTGC 59.969 50.000 0.00 0.00 0.00 4.26
282 305 2.609459 GGGCGATGTTGAGTGTTATCTG 59.391 50.000 0.00 0.00 0.00 2.90
283 306 2.236146 TGGGCGATGTTGAGTGTTATCT 59.764 45.455 0.00 0.00 0.00 1.98
284 307 2.351726 GTGGGCGATGTTGAGTGTTATC 59.648 50.000 0.00 0.00 0.00 1.75
288 311 1.302511 GGTGGGCGATGTTGAGTGT 60.303 57.895 0.00 0.00 0.00 3.55
295 318 4.741239 AGAGGGGGTGGGCGATGT 62.741 66.667 0.00 0.00 0.00 3.06
304 327 0.030603 GAGATGGGAAGAGAGGGGGT 60.031 60.000 0.00 0.00 0.00 4.95
323 346 3.452786 TCTCCTCTGCTTCCCGCG 61.453 66.667 0.00 0.00 43.27 6.46
329 352 3.394836 GGCCGGTCTCCTCTGCTT 61.395 66.667 1.90 0.00 0.00 3.91
404 427 2.027751 GGCGATGTAGCTCCGACC 59.972 66.667 0.00 0.00 37.29 4.79
405 428 2.027751 GGGCGATGTAGCTCCGAC 59.972 66.667 0.00 0.00 37.29 4.79
406 429 2.441348 TGGGCGATGTAGCTCCGA 60.441 61.111 0.00 0.00 36.62 4.55
479 502 0.172578 CGGCCTGACGATACAAGTCA 59.827 55.000 0.00 0.00 45.23 3.41
523 547 1.304713 GGGAGAGGACCCGTGTGTA 60.305 63.158 0.00 0.00 40.49 2.90
541 565 3.383185 GGAATACACACTGAGAGGGAGAG 59.617 52.174 0.00 0.00 0.00 3.20
555 579 2.172930 GGGAAGAGGAAGGGGAATACAC 59.827 54.545 0.00 0.00 0.00 2.90
556 580 2.488836 GGGAAGAGGAAGGGGAATACA 58.511 52.381 0.00 0.00 0.00 2.29
565 589 4.950475 GTCTTAATTTGGGGGAAGAGGAAG 59.050 45.833 0.00 0.00 0.00 3.46
573 597 4.229582 ACATAGCAGTCTTAATTTGGGGGA 59.770 41.667 0.00 0.00 0.00 4.81
584 608 4.848357 ACAATAGGCAACATAGCAGTCTT 58.152 39.130 0.00 0.00 41.41 3.01
591 615 4.970662 AGCACAACAATAGGCAACATAG 57.029 40.909 0.00 0.00 41.41 2.23
602 626 3.554934 TGAAGACCTGAAGCACAACAAT 58.445 40.909 0.00 0.00 0.00 2.71
630 654 1.898574 AAGTCCCAAGTTGCCGCTG 60.899 57.895 0.00 0.00 0.00 5.18
631 655 1.898574 CAAGTCCCAAGTTGCCGCT 60.899 57.895 0.00 0.00 0.00 5.52
647 671 4.164843 ACCACAAAAAGCTACTCTCCAA 57.835 40.909 0.00 0.00 0.00 3.53
650 674 4.254492 CCCTACCACAAAAAGCTACTCTC 58.746 47.826 0.00 0.00 0.00 3.20
651 675 3.559384 GCCCTACCACAAAAAGCTACTCT 60.559 47.826 0.00 0.00 0.00 3.24
652 676 2.747989 GCCCTACCACAAAAAGCTACTC 59.252 50.000 0.00 0.00 0.00 2.59
653 677 2.107552 TGCCCTACCACAAAAAGCTACT 59.892 45.455 0.00 0.00 0.00 2.57
654 678 2.510613 TGCCCTACCACAAAAAGCTAC 58.489 47.619 0.00 0.00 0.00 3.58
655 679 2.961531 TGCCCTACCACAAAAAGCTA 57.038 45.000 0.00 0.00 0.00 3.32
656 680 1.895131 CATGCCCTACCACAAAAAGCT 59.105 47.619 0.00 0.00 0.00 3.74
657 681 1.672737 GCATGCCCTACCACAAAAAGC 60.673 52.381 6.36 0.00 0.00 3.51
658 682 1.617850 TGCATGCCCTACCACAAAAAG 59.382 47.619 16.68 0.00 0.00 2.27
659 683 1.342819 GTGCATGCCCTACCACAAAAA 59.657 47.619 16.68 0.00 0.00 1.94
676 700 2.031163 AGGTCACGCCTCTTGTGC 59.969 61.111 0.00 0.00 46.96 4.57
678 702 2.031163 GCAGGTCACGCCTCTTGT 59.969 61.111 0.00 0.00 46.96 3.16
681 705 3.699894 CCAGCAGGTCACGCCTCT 61.700 66.667 0.00 0.00 46.96 3.69
751 976 4.767255 GGGCGTCTGGAGCACCTG 62.767 72.222 0.71 0.55 37.04 4.00
764 989 1.068954 GCTCAGAAACTCAAAAGGGCG 60.069 52.381 0.00 0.00 0.00 6.13
780 1005 3.365472 TCTGTAGGCTAAGACATGCTCA 58.635 45.455 0.00 0.00 0.00 4.26
813 1038 2.505364 ATTCCCTGCTTCAGTGGCCC 62.505 60.000 0.00 0.00 0.00 5.80
816 1041 2.089980 CTGAATTCCCTGCTTCAGTGG 58.910 52.381 2.27 0.00 42.12 4.00
834 1059 1.117150 CAAATTGATCCCCTGGCCTG 58.883 55.000 3.32 2.54 0.00 4.85
843 1068 8.024285 TGTTTAACCGTGATTACAAATTGATCC 58.976 33.333 0.00 0.00 0.00 3.36
845 1070 9.751542 TTTGTTTAACCGTGATTACAAATTGAT 57.248 25.926 0.00 0.00 32.43 2.57
879 1104 7.856145 ATTCAGTTAGCCTGTTAAGATCTTG 57.144 36.000 18.47 1.73 42.19 3.02
889 1114 3.941483 CCAATCGAATTCAGTTAGCCTGT 59.059 43.478 6.22 0.00 42.19 4.00
893 1118 2.033424 GGCCCAATCGAATTCAGTTAGC 59.967 50.000 6.22 6.00 0.00 3.09
895 1120 3.358111 TGGCCCAATCGAATTCAGTTA 57.642 42.857 0.00 0.00 0.00 2.24
913 1138 1.332686 CGGACATGCTTGTGATGATGG 59.667 52.381 10.37 0.00 35.79 3.51
978 1203 7.392953 TGCATAAACTGGTAGATCAAAACATCA 59.607 33.333 0.00 0.00 0.00 3.07
1033 1258 7.558444 ACAAGTACTGAAAACCCAATGAAAGTA 59.442 33.333 0.00 0.00 0.00 2.24
1048 1273 7.661127 ACGCACATTAAATACAAGTACTGAA 57.339 32.000 0.00 0.00 0.00 3.02
1070 1295 4.861210 AGCTATTTCGGAATCTCTGTACG 58.139 43.478 0.00 0.00 0.00 3.67
1110 1349 3.954200 TGCAGGCACTATTCATTCAGAA 58.046 40.909 0.00 0.00 37.29 3.02
1161 1400 5.449041 CCTCAAAATCCGTGTCCATATGTTG 60.449 44.000 1.24 0.00 0.00 3.33
1162 1401 4.640201 CCTCAAAATCCGTGTCCATATGTT 59.360 41.667 1.24 0.00 0.00 2.71
1163 1402 4.080582 TCCTCAAAATCCGTGTCCATATGT 60.081 41.667 1.24 0.00 0.00 2.29
1164 1403 4.273480 GTCCTCAAAATCCGTGTCCATATG 59.727 45.833 0.00 0.00 0.00 1.78
1165 1404 4.080582 TGTCCTCAAAATCCGTGTCCATAT 60.081 41.667 0.00 0.00 0.00 1.78
1166 1405 3.262151 TGTCCTCAAAATCCGTGTCCATA 59.738 43.478 0.00 0.00 0.00 2.74
1167 1406 2.039746 TGTCCTCAAAATCCGTGTCCAT 59.960 45.455 0.00 0.00 0.00 3.41
1168 1407 1.418264 TGTCCTCAAAATCCGTGTCCA 59.582 47.619 0.00 0.00 0.00 4.02
1169 1408 2.178912 TGTCCTCAAAATCCGTGTCC 57.821 50.000 0.00 0.00 0.00 4.02
1170 1409 2.159517 GCATGTCCTCAAAATCCGTGTC 60.160 50.000 0.00 0.00 0.00 3.67
1171 1410 1.812571 GCATGTCCTCAAAATCCGTGT 59.187 47.619 0.00 0.00 0.00 4.49
1172 1411 1.202065 CGCATGTCCTCAAAATCCGTG 60.202 52.381 0.00 0.00 0.00 4.94
1173 1412 1.086696 CGCATGTCCTCAAAATCCGT 58.913 50.000 0.00 0.00 0.00 4.69
1176 1415 0.101219 GGCCGCATGTCCTCAAAATC 59.899 55.000 0.00 0.00 0.00 2.17
1198 1437 1.835483 GCATGAGATAACGGCAGCGG 61.835 60.000 0.00 0.00 0.00 5.52
1261 1500 4.202419 ACTGTGTAGTATTGCAAGTTGGGA 60.202 41.667 4.94 0.00 34.74 4.37
1268 1508 7.390440 AGAAATTAGCACTGTGTAGTATTGCAA 59.610 33.333 9.86 0.00 34.74 4.08
1297 1537 2.799126 ACAGGCGTATTCCCATTTCA 57.201 45.000 0.00 0.00 0.00 2.69
1343 1583 2.698776 TAAATGTGTGCGGGCCCACA 62.699 55.000 24.92 17.37 44.91 4.17
1344 1584 1.319614 ATAAATGTGTGCGGGCCCAC 61.320 55.000 24.92 14.12 36.28 4.61
1345 1585 1.000270 ATAAATGTGTGCGGGCCCA 60.000 52.632 24.92 0.00 0.00 5.36
1346 1586 1.034838 TGATAAATGTGTGCGGGCCC 61.035 55.000 13.57 13.57 0.00 5.80
1347 1587 1.032014 ATGATAAATGTGTGCGGGCC 58.968 50.000 0.00 0.00 0.00 5.80
1348 1588 2.878406 ACTATGATAAATGTGTGCGGGC 59.122 45.455 0.00 0.00 0.00 6.13
1349 1589 4.690748 CCTACTATGATAAATGTGTGCGGG 59.309 45.833 0.00 0.00 0.00 6.13
1379 1619 4.382685 GGATGAATCACTAACGGACAAGGA 60.383 45.833 0.00 0.00 0.00 3.36
1393 1633 0.465705 GTCCCTCGCAGGATGAATCA 59.534 55.000 4.00 0.00 39.69 2.57
1478 3237 2.027929 TGAACCGAATAACGACACCCAT 60.028 45.455 0.00 0.00 45.77 4.00
1516 3341 3.313249 GCCATAAATTGCCCAATTGAAGC 59.687 43.478 7.12 10.15 40.57 3.86
1571 3404 5.313623 GTGTGCAAATACATCGAGTGTAAC 58.686 41.667 10.39 6.08 45.87 2.50
1576 3409 2.683968 ACGTGTGCAAATACATCGAGT 58.316 42.857 0.00 0.00 32.98 4.18
1612 3445 2.129785 CCCCTGCTGCAATTAGCCC 61.130 63.158 3.02 0.00 44.83 5.19
1781 3723 2.695666 TGCCTCCTCAGAACTACATAGC 59.304 50.000 0.00 0.00 0.00 2.97
1785 3727 0.898320 GCTGCCTCCTCAGAACTACA 59.102 55.000 0.00 0.00 36.19 2.74
1906 3851 0.253630 ATCTTCCCCCACAAGCCCTA 60.254 55.000 0.00 0.00 0.00 3.53
1909 3854 0.919710 ACTATCTTCCCCCACAAGCC 59.080 55.000 0.00 0.00 0.00 4.35
1910 3855 1.559682 TCACTATCTTCCCCCACAAGC 59.440 52.381 0.00 0.00 0.00 4.01
1918 3863 2.771943 TGGTCATGGTCACTATCTTCCC 59.228 50.000 0.00 0.00 0.00 3.97
2042 3987 2.566570 TACTTCAGCGTGCGGTGGA 61.567 57.895 20.97 13.44 43.10 4.02
2050 3995 3.914984 ACATGCAGTACTTCAGCGT 57.085 47.368 0.89 0.00 0.00 5.07
2082 4027 5.363939 CATGGAGGGTGCAGTTTTTAAAAA 58.636 37.500 9.31 9.31 0.00 1.94
2085 4030 2.298729 GCATGGAGGGTGCAGTTTTTAA 59.701 45.455 0.00 0.00 42.08 1.52
2086 4031 1.892474 GCATGGAGGGTGCAGTTTTTA 59.108 47.619 0.00 0.00 42.08 1.52
2115 4060 3.129287 CCATGGCGTGCTAATCTTTCTTT 59.871 43.478 0.00 0.00 0.00 2.52
2134 4079 4.927049 TCTTTTCATGCCTTCTTCTCCAT 58.073 39.130 0.00 0.00 0.00 3.41
2154 4099 8.971073 CATCATGGGGTAAGTTTTTCTAAATCT 58.029 33.333 0.00 0.00 0.00 2.40
2205 4152 4.313819 GGGGCTGAACTAAACCCG 57.686 61.111 0.00 0.00 43.82 5.28
2219 4834 0.955919 GCTCTGGTTTGTCTTCGGGG 60.956 60.000 0.00 0.00 0.00 5.73
2290 4905 0.948623 TTCCACCACACGAGCAATCG 60.949 55.000 0.00 0.00 39.31 3.34
2307 4922 2.218603 AGTTCAACACCACGTCCATTC 58.781 47.619 0.00 0.00 0.00 2.67
2308 4923 2.341846 AGTTCAACACCACGTCCATT 57.658 45.000 0.00 0.00 0.00 3.16
2314 4929 3.056393 TCCCATAGTAGTTCAACACCACG 60.056 47.826 0.00 0.00 0.00 4.94
2410 6769 3.417101 AGACATTTATTGCGTGGGACAA 58.583 40.909 0.00 0.00 44.16 3.18
2429 6788 1.019278 GGGAACGAGATGCGCAAAGA 61.019 55.000 17.11 0.00 46.04 2.52
2451 6810 1.965930 CAACGGCTAGCTGCACCAA 60.966 57.895 23.72 0.00 45.15 3.67
2478 6837 1.892474 GTAAAGGCCCAAATGACAGCA 59.108 47.619 0.00 0.00 0.00 4.41
2483 6842 3.295973 GCCATAGTAAAGGCCCAAATGA 58.704 45.455 0.00 0.00 45.18 2.57
2500 6859 2.899345 TATTCGTGTCTGCGCGCCAT 62.899 55.000 30.77 6.76 46.94 4.40
2513 6872 3.851105 GCTGGTATAACGCTCGTATTCGT 60.851 47.826 0.00 0.00 41.06 3.85
2538 6897 7.387948 CGTATAATTTTCCCTAGCAGCTTACAT 59.612 37.037 0.00 0.00 0.00 2.29
2543 6902 5.163343 TGTCGTATAATTTTCCCTAGCAGCT 60.163 40.000 0.00 0.00 0.00 4.24
2549 6908 8.795842 ACAACATTGTCGTATAATTTTCCCTA 57.204 30.769 0.00 0.00 36.50 3.53
2554 6914 9.005180 CGCAATACAACATTGTCGTATAATTTT 57.995 29.630 0.00 0.00 42.35 1.82
2556 6916 6.631238 GCGCAATACAACATTGTCGTATAATT 59.369 34.615 0.30 0.00 42.35 1.40
2565 6925 2.746904 TGCTAGCGCAATACAACATTGT 59.253 40.909 11.47 2.32 44.62 2.71
2663 7023 9.435688 GCCCAACATTTGTTTTATCTAAGAAAT 57.564 29.630 0.00 0.00 35.83 2.17
2664 7024 7.596995 CGCCCAACATTTGTTTTATCTAAGAAA 59.403 33.333 0.00 0.00 35.83 2.52
2665 7025 7.087639 CGCCCAACATTTGTTTTATCTAAGAA 58.912 34.615 0.00 0.00 35.83 2.52
2666 7026 6.207810 ACGCCCAACATTTGTTTTATCTAAGA 59.792 34.615 0.00 0.00 35.83 2.10
2667 7027 6.386654 ACGCCCAACATTTGTTTTATCTAAG 58.613 36.000 0.00 0.00 35.83 2.18
2668 7028 6.334102 ACGCCCAACATTTGTTTTATCTAA 57.666 33.333 0.00 0.00 35.83 2.10
2669 7029 5.968528 ACGCCCAACATTTGTTTTATCTA 57.031 34.783 0.00 0.00 35.83 1.98
2670 7030 4.864704 ACGCCCAACATTTGTTTTATCT 57.135 36.364 0.00 0.00 35.83 1.98
2671 7031 5.462405 TGTACGCCCAACATTTGTTTTATC 58.538 37.500 0.00 0.00 35.83 1.75
2672 7032 5.455056 TGTACGCCCAACATTTGTTTTAT 57.545 34.783 0.00 0.00 35.83 1.40
2673 7033 4.913335 TGTACGCCCAACATTTGTTTTA 57.087 36.364 0.00 0.00 35.83 1.52
2674 7034 3.802948 TGTACGCCCAACATTTGTTTT 57.197 38.095 0.00 0.00 35.83 2.43
2675 7035 4.054671 CAATGTACGCCCAACATTTGTTT 58.945 39.130 3.84 0.00 39.83 2.83
2676 7036 3.553922 CCAATGTACGCCCAACATTTGTT 60.554 43.478 3.84 0.00 39.83 2.83
2677 7037 2.029470 CCAATGTACGCCCAACATTTGT 60.029 45.455 3.84 0.00 39.83 2.83
2678 7038 2.230025 TCCAATGTACGCCCAACATTTG 59.770 45.455 3.84 2.11 39.83 2.32
2679 7039 2.520069 TCCAATGTACGCCCAACATTT 58.480 42.857 3.84 0.00 39.83 2.32
2680 7040 2.208132 TCCAATGTACGCCCAACATT 57.792 45.000 1.26 1.26 39.83 2.71
2681 7041 2.426738 CAATCCAATGTACGCCCAACAT 59.573 45.455 0.00 0.00 39.22 2.71
2682 7042 1.815613 CAATCCAATGTACGCCCAACA 59.184 47.619 0.00 0.00 0.00 3.33
2683 7043 1.816224 ACAATCCAATGTACGCCCAAC 59.184 47.619 0.00 0.00 0.00 3.77
2684 7044 2.208132 ACAATCCAATGTACGCCCAA 57.792 45.000 0.00 0.00 0.00 4.12
2685 7045 3.569194 ATACAATCCAATGTACGCCCA 57.431 42.857 0.00 0.00 38.53 5.36
2686 7046 4.451096 CACTATACAATCCAATGTACGCCC 59.549 45.833 0.00 0.00 38.53 6.13
2687 7047 4.451096 CCACTATACAATCCAATGTACGCC 59.549 45.833 0.00 0.00 38.53 5.68
2688 7048 4.084013 GCCACTATACAATCCAATGTACGC 60.084 45.833 0.00 0.00 38.53 4.42
2689 7049 5.297547 AGCCACTATACAATCCAATGTACG 58.702 41.667 0.00 0.00 38.53 3.67
2690 7050 6.369065 GCTAGCCACTATACAATCCAATGTAC 59.631 42.308 2.29 0.00 38.53 2.90
2691 7051 6.042666 TGCTAGCCACTATACAATCCAATGTA 59.957 38.462 13.29 0.00 39.91 2.29
2692 7052 5.163205 TGCTAGCCACTATACAATCCAATGT 60.163 40.000 13.29 0.00 37.32 2.71
2693 7053 5.180117 GTGCTAGCCACTATACAATCCAATG 59.820 44.000 13.29 0.00 41.35 2.82
2694 7054 5.308825 GTGCTAGCCACTATACAATCCAAT 58.691 41.667 13.29 0.00 41.35 3.16
2695 7055 4.703897 GTGCTAGCCACTATACAATCCAA 58.296 43.478 13.29 0.00 41.35 3.53
2696 7056 3.243737 CGTGCTAGCCACTATACAATCCA 60.244 47.826 13.29 0.00 42.42 3.41
2697 7057 3.243771 ACGTGCTAGCCACTATACAATCC 60.244 47.826 13.29 0.00 42.42 3.01
2698 7058 3.736252 CACGTGCTAGCCACTATACAATC 59.264 47.826 13.29 0.00 42.42 2.67
2699 7059 3.383505 TCACGTGCTAGCCACTATACAAT 59.616 43.478 13.29 0.00 42.42 2.71
2700 7060 2.756207 TCACGTGCTAGCCACTATACAA 59.244 45.455 13.29 0.00 42.42 2.41
2701 7061 2.357952 CTCACGTGCTAGCCACTATACA 59.642 50.000 13.29 0.00 42.42 2.29
2702 7062 2.287668 CCTCACGTGCTAGCCACTATAC 60.288 54.545 13.29 0.99 42.42 1.47
2703 7063 1.954382 CCTCACGTGCTAGCCACTATA 59.046 52.381 13.29 0.00 42.42 1.31
2704 7064 0.747255 CCTCACGTGCTAGCCACTAT 59.253 55.000 13.29 0.00 42.42 2.12
2705 7065 0.611062 ACCTCACGTGCTAGCCACTA 60.611 55.000 13.29 0.00 42.42 2.74
2706 7066 0.611062 TACCTCACGTGCTAGCCACT 60.611 55.000 13.29 0.00 42.42 4.00
2707 7067 0.245539 TTACCTCACGTGCTAGCCAC 59.754 55.000 13.29 9.58 41.15 5.01
2708 7068 1.191535 ATTACCTCACGTGCTAGCCA 58.808 50.000 13.29 0.00 0.00 4.75
2709 7069 3.121544 GTTATTACCTCACGTGCTAGCC 58.878 50.000 13.29 2.49 0.00 3.93
2710 7070 3.777478 TGTTATTACCTCACGTGCTAGC 58.223 45.455 11.67 8.10 0.00 3.42
2711 7071 6.757010 AGAATTGTTATTACCTCACGTGCTAG 59.243 38.462 11.67 3.70 0.00 3.42
2712 7072 6.636705 AGAATTGTTATTACCTCACGTGCTA 58.363 36.000 11.67 0.00 0.00 3.49
2713 7073 5.488341 AGAATTGTTATTACCTCACGTGCT 58.512 37.500 11.67 0.00 0.00 4.40
2714 7074 5.796350 AGAATTGTTATTACCTCACGTGC 57.204 39.130 11.67 0.00 0.00 5.34
2715 7075 7.039882 AGGTAGAATTGTTATTACCTCACGTG 58.960 38.462 9.94 9.94 30.25 4.49
2716 7076 7.179076 AGGTAGAATTGTTATTACCTCACGT 57.821 36.000 0.00 0.00 30.25 4.49
2717 7077 9.590451 TTAAGGTAGAATTGTTATTACCTCACG 57.410 33.333 2.80 0.00 33.49 4.35
2725 7085 9.227777 GGCCGATATTAAGGTAGAATTGTTATT 57.772 33.333 0.00 0.00 0.00 1.40
2726 7086 7.827729 GGGCCGATATTAAGGTAGAATTGTTAT 59.172 37.037 0.00 0.00 0.00 1.89
2727 7087 7.163441 GGGCCGATATTAAGGTAGAATTGTTA 58.837 38.462 0.00 0.00 0.00 2.41
2728 7088 6.002082 GGGCCGATATTAAGGTAGAATTGTT 58.998 40.000 0.00 0.00 0.00 2.83
2729 7089 5.072600 TGGGCCGATATTAAGGTAGAATTGT 59.927 40.000 0.00 0.00 0.00 2.71
2730 7090 5.556915 TGGGCCGATATTAAGGTAGAATTG 58.443 41.667 0.00 0.00 0.00 2.32
2731 7091 5.836024 TGGGCCGATATTAAGGTAGAATT 57.164 39.130 0.00 0.00 0.00 2.17
2732 7092 6.406624 CGTATGGGCCGATATTAAGGTAGAAT 60.407 42.308 10.96 0.00 0.00 2.40
2733 7093 5.105635 CGTATGGGCCGATATTAAGGTAGAA 60.106 44.000 10.96 0.00 0.00 2.10
2734 7094 4.400251 CGTATGGGCCGATATTAAGGTAGA 59.600 45.833 10.96 0.00 0.00 2.59
2735 7095 4.159135 ACGTATGGGCCGATATTAAGGTAG 59.841 45.833 10.96 0.00 0.00 3.18
2736 7096 4.088634 ACGTATGGGCCGATATTAAGGTA 58.911 43.478 10.96 0.00 0.00 3.08
2737 7097 2.901839 ACGTATGGGCCGATATTAAGGT 59.098 45.455 10.96 0.00 0.00 3.50
2738 7098 3.604875 ACGTATGGGCCGATATTAAGG 57.395 47.619 10.96 0.00 0.00 2.69
2739 7099 7.035840 ACTATACGTATGGGCCGATATTAAG 57.964 40.000 21.21 7.56 0.00 1.85
2740 7100 7.408756 AACTATACGTATGGGCCGATATTAA 57.591 36.000 21.21 0.01 0.00 1.40
2741 7101 7.122501 TGAAACTATACGTATGGGCCGATATTA 59.877 37.037 21.21 6.19 0.00 0.98
2742 7102 5.927281 AACTATACGTATGGGCCGATATT 57.073 39.130 21.21 4.14 0.00 1.28
2743 7103 5.419788 TGAAACTATACGTATGGGCCGATAT 59.580 40.000 21.21 0.83 0.00 1.63
2744 7104 4.766373 TGAAACTATACGTATGGGCCGATA 59.234 41.667 21.21 2.88 0.00 2.92
2745 7105 3.575256 TGAAACTATACGTATGGGCCGAT 59.425 43.478 21.21 5.29 0.00 4.18
2746 7106 2.957680 TGAAACTATACGTATGGGCCGA 59.042 45.455 21.21 0.00 0.00 5.54
2747 7107 3.374220 TGAAACTATACGTATGGGCCG 57.626 47.619 21.21 6.51 0.00 6.13
2748 7108 4.952460 TCTTGAAACTATACGTATGGGCC 58.048 43.478 21.21 10.94 0.00 5.80
2749 7109 6.220930 TCATCTTGAAACTATACGTATGGGC 58.779 40.000 21.21 11.47 0.00 5.36
2750 7110 7.434492 ACTCATCTTGAAACTATACGTATGGG 58.566 38.462 21.21 14.30 0.00 4.00
2751 7111 8.873215 AACTCATCTTGAAACTATACGTATGG 57.127 34.615 18.37 17.40 0.00 2.74
2761 7121 9.003658 CAGGTGTAATTAACTCATCTTGAAACT 57.996 33.333 0.00 0.00 0.00 2.66
2762 7122 8.237267 CCAGGTGTAATTAACTCATCTTGAAAC 58.763 37.037 0.00 0.00 0.00 2.78
2763 7123 7.393234 CCCAGGTGTAATTAACTCATCTTGAAA 59.607 37.037 0.00 0.00 0.00 2.69
2764 7124 6.884295 CCCAGGTGTAATTAACTCATCTTGAA 59.116 38.462 0.00 0.00 0.00 2.69
2765 7125 6.414732 CCCAGGTGTAATTAACTCATCTTGA 58.585 40.000 0.00 0.00 0.00 3.02
2766 7126 5.590259 CCCCAGGTGTAATTAACTCATCTTG 59.410 44.000 0.00 0.00 0.00 3.02
2767 7127 5.253096 ACCCCAGGTGTAATTAACTCATCTT 59.747 40.000 0.00 0.00 32.98 2.40
2768 7128 4.788617 ACCCCAGGTGTAATTAACTCATCT 59.211 41.667 0.00 0.00 32.98 2.90
2769 7129 5.112129 ACCCCAGGTGTAATTAACTCATC 57.888 43.478 0.00 0.00 32.98 2.92
2770 7130 5.489637 TGTACCCCAGGTGTAATTAACTCAT 59.510 40.000 0.00 0.00 36.19 2.90
2889 7251 1.542472 CATCTGTCCACTTTGCATGCA 59.458 47.619 18.46 18.46 0.00 3.96
3138 7514 4.680237 CCGCCGTTGACAGAGCCA 62.680 66.667 0.00 0.00 0.00 4.75
3171 7547 3.113514 TTGGTTGACAGAGCCGCCA 62.114 57.895 0.00 0.00 0.00 5.69
3617 8015 4.235079 TCCAATTACCACCCTTGATCTG 57.765 45.455 0.00 0.00 0.00 2.90
4061 8505 7.375834 TGTTCTACTCAGTTCGTGTTAATCAT 58.624 34.615 0.00 0.00 0.00 2.45
4072 8516 7.277981 TCAAGTCAACTTTGTTCTACTCAGTTC 59.722 37.037 0.00 0.00 33.11 3.01
4290 8748 4.790962 CTGCAGCCGCCTGGTCAT 62.791 66.667 0.00 0.00 39.54 3.06
4438 8896 1.675641 GGGCTCCACGCAGATGTTT 60.676 57.895 0.00 0.00 41.67 2.83
4449 8907 4.664267 AGCAGTCCTGGGGCTCCA 62.664 66.667 4.49 4.49 41.58 3.86
4540 8998 1.522355 CAAGCGGCCATCGACAGAT 60.522 57.895 2.24 0.00 42.43 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.