AutoCloner

Multiple sequence alignment - TraesCS4A01G157600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS4A01G157600	chr4A	100.000	5546	0	0	1	5546	321904485	321898940	0.000000e+00	10242
1	TraesCS4A01G157600	chr4D	97.721	3467	59	13	1	3463	292909083	292912533	0.000000e+00	5947
2	TraesCS4A01G157600	chr4D	93.679	1503	35	20	3458	4912	292912689	292914179	0.000000e+00	2194
3	TraesCS4A01G157600	chr4B	94.767	3115	88	35	1835	4914	277318099	277321173	0.000000e+00	4780
4	TraesCS4A01G157600	chr4B	95.874	1842	49	9	1	1836	277316197	277318017	0.000000e+00	2955
5	TraesCS4A01G157600	chr2D	95.126	636	27	3	4913	5546	81159494	81160127	0.000000e+00	1000
6	TraesCS4A01G157600	chr2D	83.895	267	41	2	4904	5170	618309704	618309968	2.560000e-63	254
7	TraesCS4A01G157600	chr7B	85.873	630	63	19	4928	5546	608321655	608322269	0.000000e+00	647
8	TraesCS4A01G157600	chr1D	82.316	639	63	31	4911	5546	487197912	487198503	4.960000e-140	508
9	TraesCS4A01G157600	chr1D	81.920	448	48	11	4911	5353	158116046	158116465	1.140000e-91	348
10	TraesCS4A01G157600	chr1D	82.759	261	45	0	4910	5170	395410833	395411093	3.340000e-57	233
11	TraesCS4A01G157600	chr6A	80.031	636	78	29	4913	5546	531715317	531715905	5.140000e-115	425
12	TraesCS4A01G157600	chr6A	91.250	160	10	3	319	477	47466951	47466795	1.210000e-51	215
13	TraesCS4A01G157600	chr3B	90.377	239	23	0	4914	5152	800135816	800136054	1.160000e-81	315
14	TraesCS4A01G157600	chr7A	88.889	243	27	0	4910	5152	108495294	108495052	3.250000e-77	300
15	TraesCS4A01G157600	chr7A	84.507	284	35	6	5126	5404	644623952	644624231	7.080000e-69	272
16	TraesCS4A01G157600	chr2B	88.571	245	25	3	4909	5152	339204737	339204495	1.510000e-75	294
17	TraesCS4A01G157600	chr1B	87.204	211	26	1	4911	5121	288952157	288952366	7.180000e-59	239
18	TraesCS4A01G157600	chr1B	90.244	164	15	1	320	482	574286834	574286997	4.350000e-51	213
19	TraesCS4A01G157600	chr5D	92.121	165	12	1	320	483	399614685	399614521	1.200000e-56	231
20	TraesCS4A01G157600	chr5B	91.515	165	13	1	320	483	479726998	479726834	5.590000e-55	226
21	TraesCS4A01G157600	chr3A	90.476	168	12	3	317	483	675873017	675873181	9.350000e-53	219
22	TraesCS4A01G157600	chr1A	90.854	164	14	1	320	482	520812189	520812352	9.350000e-53	219
23	TraesCS4A01G157600	chr6D	90.683	161	10	2	323	483	346454051	346453896	5.630000e-50	209

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS4A01G157600	chr4A	321898940	321904485	5545	True	10242.0	10242	100.0000	1	5546	1	chr4A.!!$R1	5545
1	TraesCS4A01G157600	chr4D	292909083	292914179	5096	False	4070.5	5947	95.7000	1	4912	2	chr4D.!!$F1	4911
2	TraesCS4A01G157600	chr4B	277316197	277321173	4976	False	3867.5	4780	95.3205	1	4914	2	chr4B.!!$F1	4913
3	TraesCS4A01G157600	chr2D	81159494	81160127	633	False	1000.0	1000	95.1260	4913	5546	1	chr2D.!!$F1	633
4	TraesCS4A01G157600	chr7B	608321655	608322269	614	False	647.0	647	85.8730	4928	5546	1	chr7B.!!$F1	618
5	TraesCS4A01G157600	chr1D	487197912	487198503	591	False	508.0	508	82.3160	4911	5546	1	chr1D.!!$F3	635
6	TraesCS4A01G157600	chr6A	531715317	531715905	588	False	425.0	425	80.0310	4913	5546	1	chr6A.!!$F1	633

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
374	376	0.909610	CTTGTGGCCTGGAGGTCCTA	60.910	60.000	3.32	0.0	39.61	2.94	F
594	597	1.702491	GCGACCTTCCATGGCGTAAC	61.702	60.000	6.96	0.0	0.00	2.50	F
1307	1314	0.169672	CCCTGAGCTGCAATTGTTCG	59.830	55.000	7.40	0.0	0.00	3.95	F
1508	1515	4.264253	ACAATGAGCTGCTATTGCACTTA	58.736	39.130	21.22	0.0	45.31	2.24	F
2613	2708	4.168101	TCAACCCAGTGATAGTTCTCCTT	58.832	43.478	0.00	0.0	0.00	3.36	F
3457	3725	0.763652	ACCCTCATAGGAGCATGCAG	59.236	55.000	21.98	6.2	37.67	4.41	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Hairpin	End Stability	Orientation
1282	1289	0.543749	ATTGCAGCTCAGGGAGGTAC	59.456	55.000	0.00	38.40	3.34	R
1867	1958	2.158726	TGAAAGCCAAAAGGAGGTACGT	60.159	45.455	0.00	0.00	3.57	R
2552	2647	2.196595	CTGATGGTACTTTCCTCCCCA	58.803	52.381	0.00	0.00	4.96	R
3012	3107	2.292569	CTCATTCCCCAATGCAGAATCG	59.707	50.000	0.00	39.56	3.34	R
3792	4079	0.041312	CACTGGTACAACAAGCGCAC	60.041	55.000	11.47	38.70	5.34	R
5250	5618	0.531974	AACGGCGCTGACAAGAAAGA	60.532	50.000	25.98	0.00	2.52	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
32	33	6.655078	AGCAAGTTATTTGGAATTCTGTGT	57.345	33.333	5.23	0.00	37.26	3.72
34	35	6.265196	AGCAAGTTATTTGGAATTCTGTGTCA	59.735	34.615	5.23	0.00	37.26	3.58
50	51	5.466728	TCTGTGTCACATTGCTACTTTTCTC	59.533	40.000	6.03	0.00	0.00	2.87
374	376	0.909610	CTTGTGGCCTGGAGGTCCTA	60.910	60.000	3.32	0.00	39.61	2.94
594	597	1.702491	GCGACCTTCCATGGCGTAAC	61.702	60.000	6.96	0.00	0.00	2.50
609	612	8.283291	CCATGGCGTAACTATTAGAAAAAGATC	58.717	37.037	0.00	0.00	0.00	2.75
613	616	7.010830	GGCGTAACTATTAGAAAAAGATCGGTT	59.989	37.037	0.00	0.00	0.00	4.44
733	736	2.157305	TTGCATGCCTTCCTTTGCCG	62.157	55.000	16.68	0.00	34.20	5.69
742	745	2.742589	CCTTCCTTTGCCGTAAGTTCTC	59.257	50.000	0.00	0.00	0.00	2.87
802	805	8.948631	ATCTTACAATCGTTGTCAATCTGTAT	57.051	30.769	6.64	0.00	44.12	2.29
951	955	9.490379	GAAGAAGAAAGCCGGAATTATAGATAA	57.510	33.333	5.05	0.00	0.00	1.75
1003	1010	6.150976	CCAAAATACAGTCTTTGGCAGTATGA	59.849	38.462	12.15	0.00	43.70	2.15
1300	1307	1.888436	CGTACCTCCCTGAGCTGCAA	61.888	60.000	1.02	0.00	0.00	4.08
1307	1314	0.169672	CCCTGAGCTGCAATTGTTCG	59.830	55.000	7.40	0.00	0.00	3.95
1337	1344	8.990163	TTTCAACTATCTACCCTGTTCTTTTT	57.010	30.769	0.00	0.00	0.00	1.94
1369	1376	5.915196	GCACTTTCAATTTCAGTTGTCTACC	59.085	40.000	0.00	0.00	0.00	3.18
1370	1377	6.238759	GCACTTTCAATTTCAGTTGTCTACCT	60.239	38.462	0.00	0.00	0.00	3.08
1508	1515	4.264253	ACAATGAGCTGCTATTGCACTTA	58.736	39.130	21.22	0.00	45.31	2.24
1594	1601	4.341806	TGGAAACTGACAGCATCAATGTTT	59.658	37.500	1.25	7.60	38.02	2.83
1720	1728	7.931948	GGTAGCATTGTTACATACTTCCACTAT	59.068	37.037	12.00	0.00	0.00	2.12
1866	1957	5.885912	TCTAGTGCTTTTGTTCCTTTCTTGT	59.114	36.000	0.00	0.00	0.00	3.16
1867	1958	7.051623	TCTAGTGCTTTTGTTCCTTTCTTGTA	58.948	34.615	0.00	0.00	0.00	2.41
1868	1959	5.891451	AGTGCTTTTGTTCCTTTCTTGTAC	58.109	37.500	0.00	0.00	0.00	2.90
1869	1960	4.733405	GTGCTTTTGTTCCTTTCTTGTACG	59.267	41.667	0.00	0.00	0.00	3.67
2277	2369	7.750229	TCTGGTAATGCAGAAATATCAATCC	57.250	36.000	0.00	0.00	0.00	3.01
2280	2372	6.427853	TGGTAATGCAGAAATATCAATCCTCG	59.572	38.462	0.00	0.00	0.00	4.63
2454	2549	4.371681	ACCTGTTATATTGGAGTGAGGGT	58.628	43.478	0.00	0.00	0.00	4.34
2613	2708	4.168101	TCAACCCAGTGATAGTTCTCCTT	58.832	43.478	0.00	0.00	0.00	3.36
3451	3719	4.528596	TGCTTTATCTACCCTCATAGGAGC	59.471	45.833	0.00	0.00	37.67	4.70
3452	3720	4.528596	GCTTTATCTACCCTCATAGGAGCA	59.471	45.833	0.00	0.00	37.67	4.26
3453	3721	5.188751	GCTTTATCTACCCTCATAGGAGCAT	59.811	44.000	0.00	0.00	37.67	3.79
3454	3722	6.611613	TTTATCTACCCTCATAGGAGCATG	57.388	41.667	0.00	0.00	37.67	4.06
3455	3723	2.251818	TCTACCCTCATAGGAGCATGC	58.748	52.381	10.51	10.51	37.67	4.06
3456	3724	1.973515	CTACCCTCATAGGAGCATGCA	59.026	52.381	21.98	0.00	37.67	3.96
3457	3725	0.763652	ACCCTCATAGGAGCATGCAG	59.236	55.000	21.98	6.20	37.67	4.41
3458	3726	1.054231	CCCTCATAGGAGCATGCAGA	58.946	55.000	21.98	6.63	37.67	4.26
3459	3727	1.419012	CCCTCATAGGAGCATGCAGAA	59.581	52.381	21.98	2.19	37.67	3.02
3574	3843	8.414003	TGATAGTTTGCACTATAGAAGTACAGG	58.586	37.037	6.78	0.00	44.94	4.00
3597	3866	5.822519	GGTCTGTTCATGCATATTAACCTCA	59.177	40.000	0.00	0.00	0.00	3.86
3603	3872	7.998383	TGTTCATGCATATTAACCTCATAACCT	59.002	33.333	0.00	0.00	0.00	3.50
3604	3873	8.507249	GTTCATGCATATTAACCTCATAACCTC	58.493	37.037	0.00	0.00	0.00	3.85
3606	3875	8.439971	TCATGCATATTAACCTCATAACCTCTT	58.560	33.333	0.00	0.00	0.00	2.85
3607	3876	9.725019	CATGCATATTAACCTCATAACCTCTTA	57.275	33.333	0.00	0.00	0.00	2.10
3620	3907	9.186837	CTCATAACCTCTTAACCTTCTGTAGTA	57.813	37.037	0.00	0.00	0.00	1.82
3921	4250	9.513727	GTTTAAGTTTATTCCCACAACGTTTTA	57.486	29.630	0.00	0.00	0.00	1.52
3974	4303	6.183360	CGGCAGTGGTTCATATGAAAGTATTT	60.183	38.462	19.55	1.79	43.98	1.40
4072	4401	3.055530	GCTCCAGATCCTGAAGAAGAACA	60.056	47.826	0.00	0.00	32.44	3.18
4230	4559	7.733773	TTCTGTACCTCCTTTATCATTCTCA	57.266	36.000	0.00	0.00	0.00	3.27
4242	4571	6.892310	TTATCATTCTCACACATTCGTCTG	57.108	37.500	0.00	0.00	0.00	3.51
4258	4587	5.654603	TCGTCTGACTTGTGTTATGGTAT	57.345	39.130	6.21	0.00	0.00	2.73
4305	4634	1.362717	CACAGTCTCCCACGTCGTT	59.637	57.895	0.00	0.00	0.00	3.85
4422	4751	2.158957	GGACGACAGCCATCTTATTCCA	60.159	50.000	0.00	0.00	0.00	3.53
4699	5029	5.489278	AGCTTCCCTAGTTCCTTCTGTTTAT	59.511	40.000	0.00	0.00	0.00	1.40
4700	5030	5.586643	GCTTCCCTAGTTCCTTCTGTTTATG	59.413	44.000	0.00	0.00	0.00	1.90
4730	5061	0.250467	GCTCAGTTTCAGGAGGTGCA	60.250	55.000	0.00	0.00	0.00	4.57
4880	5226	6.153067	GGAGATATTTGTACGACTGGATGAG	58.847	44.000	0.00	0.00	0.00	2.90
4884	5230	4.729227	TTTGTACGACTGGATGAGCATA	57.271	40.909	0.00	0.00	0.00	3.14
5018	5364	3.495983	GCTGTTTGGTTGCCCCTAAAAAT	60.496	43.478	0.00	0.00	29.42	1.82
5165	5515	5.721960	TCTTCCCTGCTATTCTCAACTACTT	59.278	40.000	0.00	0.00	0.00	2.24
5199	5549	2.817538	AAAAATATTCGCGTCCGTGG	57.182	45.000	5.77	0.00	35.54	4.94
5200	5550	0.375803	AAAATATTCGCGTCCGTGGC	59.624	50.000	5.77	0.00	35.54	5.01
5201	5551	0.741574	AAATATTCGCGTCCGTGGCA	60.742	50.000	5.77	0.00	35.54	4.92
5202	5552	0.531974	AATATTCGCGTCCGTGGCAT	60.532	50.000	5.77	0.00	35.54	4.40
5203	5553	1.221466	ATATTCGCGTCCGTGGCATG	61.221	55.000	5.77	0.00	35.54	4.06
5256	5624	4.803426	CCGCGCGGCTCTCTTTCT	62.803	66.667	38.48	0.00	0.00	2.52
5264	5632	1.074752	GGCTCTCTTTCTTGTCAGCG	58.925	55.000	0.00	0.00	0.00	5.18
5268	5636	0.946221	CTCTTTCTTGTCAGCGCCGT	60.946	55.000	2.29	0.00	0.00	5.68
5325	5697	2.686470	CCTCTCTCTGGCTGGCCA	60.686	66.667	13.96	13.96	45.02	5.36
5475	5847	5.130145	TCCTTTTTGGTCATGGTTGTTCAAT	59.870	36.000	0.00	0.00	37.07	2.57

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
12	13	7.581213	TGTGACACAGAATTCCAAATAACTT	57.419	32.000	3.56	0.00	0.00	2.66
32	33	5.012046	TCCTCAGAGAAAAGTAGCAATGTGA	59.988	40.000	0.00	0.00	0.00	3.58
34	35	5.489792	TCCTCAGAGAAAAGTAGCAATGT	57.510	39.130	0.00	0.00	0.00	2.71
393	395	3.091633	ACCCTTGCATAACATTCTGCT	57.908	42.857	3.97	0.00	39.16	4.24
609	612	2.749621	CCCAGGAAATCAGAAGAAACCG	59.250	50.000	0.00	0.00	0.00	4.44
613	616	4.144297	CAACACCCAGGAAATCAGAAGAA	58.856	43.478	0.00	0.00	0.00	2.52
618	621	3.221771	TGAACAACACCCAGGAAATCAG	58.778	45.455	0.00	0.00	0.00	2.90
951	955	1.212935	ACTTGCTTGTGGTCTGTCCTT	59.787	47.619	0.00	0.00	37.07	3.36
1003	1010	3.053831	ACGGATCACATTTTTCGGAGT	57.946	42.857	0.00	0.00	0.00	3.85
1053	1060	4.301072	TTTCCCTGATCTACCCAAACAG	57.699	45.455	0.00	0.00	0.00	3.16
1134	1141	3.735237	ACAGTTACAGATATCCCTGCG	57.265	47.619	0.00	0.00	37.68	5.18
1282	1289	0.543749	ATTGCAGCTCAGGGAGGTAC	59.456	55.000	0.00	0.00	38.40	3.34
1337	1344	3.380954	TGAAATTGAAAGTGCAGCAGTCA	59.619	39.130	2.31	1.03	0.00	3.41
1369	1376	2.358939	GCTCCTGCAATGGACAAAAG	57.641	50.000	0.00	0.00	39.41	2.27
1508	1515	5.134202	TGTGACATCGACACTGAACTAAT	57.866	39.130	6.26	0.00	38.81	1.73
1594	1601	4.156373	CACAAACATGATATGGTGAGCACA	59.844	41.667	0.00	0.00	33.60	4.57
1720	1728	5.381757	ACACTCACAGGGCATACTTAAAAA	58.618	37.500	0.00	0.00	0.00	1.94
1843	1934	6.136541	ACAAGAAAGGAACAAAAGCACTAG	57.863	37.500	0.00	0.00	0.00	2.57
1866	1957	3.071312	TGAAAGCCAAAAGGAGGTACGTA	59.929	43.478	0.00	0.00	0.00	3.57
1867	1958	2.158726	TGAAAGCCAAAAGGAGGTACGT	60.159	45.455	0.00	0.00	0.00	3.57
1868	1959	2.225727	GTGAAAGCCAAAAGGAGGTACG	59.774	50.000	0.00	0.00	0.00	3.67
1869	1960	2.557056	GGTGAAAGCCAAAAGGAGGTAC	59.443	50.000	0.00	0.00	0.00	3.34
2552	2647	2.196595	CTGATGGTACTTTCCTCCCCA	58.803	52.381	0.00	0.00	0.00	4.96
2613	2708	7.931407	ACCATAATCATAATCAACGTCTAGCAA	59.069	33.333	0.00	0.00	0.00	3.91
2739	2834	9.685828	GTAAAAAGCTTGTCACCATAAAATACA	57.314	29.630	0.00	0.00	0.00	2.29
3012	3107	2.292569	CTCATTCCCCAATGCAGAATCG	59.707	50.000	0.00	0.00	39.56	3.34
3360	3456	7.803279	ACCCAAGACTAGAAACTGTAAAAAG	57.197	36.000	0.00	0.00	0.00	2.27
3454	3722	6.401367	GGACAAATGTTTTGCATGTATTCTGC	60.401	38.462	0.00	0.00	37.96	4.26
3455	3723	6.645827	TGGACAAATGTTTTGCATGTATTCTG	59.354	34.615	0.00	0.00	37.96	3.02
3456	3724	6.757237	TGGACAAATGTTTTGCATGTATTCT	58.243	32.000	0.00	0.00	37.96	2.40
3457	3725	7.171337	AGTTGGACAAATGTTTTGCATGTATTC	59.829	33.333	0.00	0.00	37.96	1.75
3458	3726	6.991531	AGTTGGACAAATGTTTTGCATGTATT	59.008	30.769	0.00	0.00	37.96	1.89
3459	3727	6.424509	CAGTTGGACAAATGTTTTGCATGTAT	59.575	34.615	4.48	0.00	37.96	2.29
3574	3843	6.925610	TGAGGTTAATATGCATGAACAGAC	57.074	37.500	10.16	6.82	0.00	3.51
3597	3866	8.422566	GCATACTACAGAAGGTTAAGAGGTTAT	58.577	37.037	0.00	0.00	0.00	1.89
3607	3876	8.924303	TCACTAATATGCATACTACAGAAGGTT	58.076	33.333	8.99	0.00	0.00	3.50
3792	4079	0.041312	CACTGGTACAACAAGCGCAC	60.041	55.000	11.47	0.00	38.70	5.34
3921	4250	2.651455	CATCTGTCATGCAAGGGACAT	58.349	47.619	16.43	4.00	42.62	3.06
3974	4303	2.916355	CCTGTAGGGCTTAGCTGGA	58.084	57.895	3.59	0.00	0.00	3.86
4230	4559	3.179443	ACACAAGTCAGACGAATGTGT	57.821	42.857	25.02	25.02	43.94	3.72
4242	4571	7.548097	TCTGAGAAGATACCATAACACAAGTC	58.452	38.462	0.00	0.00	0.00	3.01
4258	4587	3.956848	ACATCATCGACCATCTGAGAAGA	59.043	43.478	0.00	0.00	0.00	2.87
4305	4634	1.075601	AACTCCTTTCCATGGGCTCA	58.924	50.000	13.02	0.00	0.00	4.26
4422	4751	2.837947	TCCTCTGACCATGATTCCAGT	58.162	47.619	0.00	0.00	0.00	4.00
4730	5061	7.607991	CACTCTCATAGAAAAACCCATGTAACT	59.392	37.037	0.00	0.00	0.00	2.24
4880	5226	9.316730	TGCTTTAAGGATTTGATTGAAATATGC	57.683	29.630	0.00	0.00	34.18	3.14
4884	5230	7.910584	AGGTGCTTTAAGGATTTGATTGAAAT	58.089	30.769	0.00	0.00	36.94	2.17
5102	5448	2.069273	CCGTTCTTTTCGTCAGCTCAT	58.931	47.619	0.00	0.00	0.00	2.90
5184	5534	1.069090	ATGCCACGGACGCGAATAT	59.931	52.632	15.93	0.00	0.00	1.28
5185	5535	1.880796	CATGCCACGGACGCGAATA	60.881	57.895	15.93	0.00	0.00	1.75
5186	5536	3.195002	CATGCCACGGACGCGAAT	61.195	61.111	15.93	0.00	0.00	3.34
5210	5576	2.504274	AAAGACGACAGGGCGGTGA	61.504	57.895	0.00	0.00	35.12	4.02
5212	5578	1.466025	TACAAAGACGACAGGGCGGT	61.466	55.000	0.00	0.00	35.12	5.68
5247	5615	1.074752	GGCGCTGACAAGAAAGAGAG	58.925	55.000	7.64	0.00	0.00	3.20
5250	5618	0.531974	AACGGCGCTGACAAGAAAGA	60.532	50.000	25.98	0.00	0.00	2.52
5256	5624	3.334751	CACGAACGGCGCTGACAA	61.335	61.111	25.98	0.00	46.04	3.18
5264	5632	2.686816	CCATCCCAACACGAACGGC	61.687	63.158	0.00	0.00	0.00	5.68
5268	5636	1.142060	AGTTGTCCATCCCAACACGAA	59.858	47.619	6.11	0.00	43.61	3.85
5325	5697	6.219488	TGCACCTGTAGCATATGGGACAAT	62.219	45.833	4.56	0.00	38.67	2.71
5376	5748	1.463553	CGGGTTGCTTGGCCTTCTTT	61.464	55.000	3.32	0.00	0.00	2.52
5443	5815	1.133915	TGACCAAAAAGGAAGCTCGGT	60.134	47.619	0.00	0.00	41.22	4.69
5475	5847	2.104792	AGCTTGCACTAAGTGAACTCCA	59.895	45.455	0.00	0.00	38.70	3.86

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.