Multiple sequence alignment - TraesCS4A01G154100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G154100 chr4A 100.000 6243 0 0 1 6243 310246693 310240451 0.000000e+00 11529.0
1 TraesCS4A01G154100 chr4D 95.292 3420 96 22 878 4259 183389428 183386036 0.000000e+00 5363.0
2 TraesCS4A01G154100 chr4D 90.938 949 37 14 4258 5193 183386006 183385094 0.000000e+00 1230.0
3 TraesCS4A01G154100 chr4D 92.041 691 48 6 80 767 205910124 205909438 0.000000e+00 965.0
4 TraesCS4A01G154100 chr4D 91.606 691 53 4 80 767 208481647 208480959 0.000000e+00 950.0
5 TraesCS4A01G154100 chr4D 95.592 363 14 2 5399 5759 183384448 183384086 1.170000e-161 580.0
6 TraesCS4A01G154100 chr4D 95.965 347 12 2 5897 6243 183384098 183383754 4.230000e-156 562.0
7 TraesCS4A01G154100 chr4D 94.215 121 7 0 5290 5410 183384513 183384393 1.070000e-42 185.0
8 TraesCS4A01G154100 chr4B 95.175 3420 99 18 878 4259 200651858 200655249 0.000000e+00 5341.0
9 TraesCS4A01G154100 chr4B 94.563 846 42 3 5399 6243 200656388 200657230 0.000000e+00 1304.0
10 TraesCS4A01G154100 chr4B 96.570 554 18 1 4400 4952 200655405 200655958 0.000000e+00 917.0
11 TraesCS4A01G154100 chr4B 100.000 51 0 0 5348 5398 200656381 200656431 1.850000e-15 95.3
12 TraesCS4A01G154100 chr3D 96.496 799 24 3 5447 6243 424001010 424001806 0.000000e+00 1317.0
13 TraesCS4A01G154100 chr3D 96.855 159 4 1 5447 5605 424000844 424001001 1.330000e-66 265.0
14 TraesCS4A01G154100 chr3D 87.692 65 6 2 5865 5929 335667405 335667467 2.410000e-09 75.0
15 TraesCS4A01G154100 chr3D 79.630 108 16 6 4317 4420 574940973 574940868 8.680000e-09 73.1
16 TraesCS4A01G154100 chr3B 92.832 837 47 6 2704 3527 552442466 552443302 0.000000e+00 1201.0
17 TraesCS4A01G154100 chr3B 94.177 498 25 2 3035 3528 552441891 552442388 0.000000e+00 756.0
18 TraesCS4A01G154100 chr3B 95.238 441 20 1 5447 5887 552477253 552476814 0.000000e+00 697.0
19 TraesCS4A01G154100 chr3B 96.024 327 12 1 5917 6243 552476816 552476491 1.190000e-146 531.0
20 TraesCS4A01G154100 chr5A 92.163 689 51 2 80 767 216904449 216905135 0.000000e+00 970.0
21 TraesCS4A01G154100 chr1A 92.006 688 52 2 81 767 220067504 220068189 0.000000e+00 963.0
22 TraesCS4A01G154100 chr1A 91.837 49 3 1 769 817 255852670 255852623 4.040000e-07 67.6
23 TraesCS4A01G154100 chrUn 91.884 690 51 4 80 767 109174190 109174876 0.000000e+00 959.0
24 TraesCS4A01G154100 chr6D 91.739 690 53 3 80 767 229330500 229329813 0.000000e+00 955.0
25 TraesCS4A01G154100 chr6D 91.606 691 52 5 80 767 229350597 229349910 0.000000e+00 950.0
26 TraesCS4A01G154100 chr6D 76.744 172 29 8 4258 4419 121167779 121167609 1.120000e-12 86.1
27 TraesCS4A01G154100 chr1D 91.727 689 54 2 80 767 210243232 210243918 0.000000e+00 953.0
28 TraesCS4A01G154100 chr1D 82.979 94 14 2 4315 4407 12155784 12155692 4.010000e-12 84.2
29 TraesCS4A01G154100 chr1D 81.915 94 15 2 4315 4407 12024888 12024796 1.870000e-10 78.7
30 TraesCS4A01G154100 chr1D 91.071 56 4 1 5874 5929 404253137 404253191 2.410000e-09 75.0
31 TraesCS4A01G154100 chr1D 90.741 54 4 1 5876 5929 39956545 39956493 3.120000e-08 71.3
32 TraesCS4A01G154100 chr2A 89.906 743 69 5 80 821 355418114 355417377 0.000000e+00 952.0
33 TraesCS4A01G154100 chr2A 89.062 64 7 0 4315 4378 636906018 636906081 5.190000e-11 80.5
34 TraesCS4A01G154100 chr3A 96.581 351 11 1 5893 6243 565043205 565042856 1.170000e-161 580.0
35 TraesCS4A01G154100 chr3A 97.568 329 7 1 5447 5775 565043574 565043247 4.230000e-156 562.0
36 TraesCS4A01G154100 chr3A 88.732 71 7 1 4315 4385 741619170 741619101 1.120000e-12 86.1
37 TraesCS4A01G154100 chr3A 87.692 65 6 2 5865 5929 453656306 453656368 2.410000e-09 75.0
38 TraesCS4A01G154100 chr3A 93.333 45 3 0 769 813 311315337 311315381 4.040000e-07 67.6
39 TraesCS4A01G154100 chr2B 86.667 75 7 1 4315 4389 576086747 576086818 5.190000e-11 80.5
40 TraesCS4A01G154100 chr5D 92.593 54 3 1 5874 5927 315936056 315936004 6.710000e-10 76.8
41 TraesCS4A01G154100 chr1B 79.245 106 21 1 4315 4420 377191201 377191305 8.680000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G154100 chr4A 310240451 310246693 6242 True 11529.000 11529 100.0000 1 6243 1 chr4A.!!$R1 6242
1 TraesCS4A01G154100 chr4D 183383754 183389428 5674 True 1584.000 5363 94.4004 878 6243 5 chr4D.!!$R3 5365
2 TraesCS4A01G154100 chr4D 205909438 205910124 686 True 965.000 965 92.0410 80 767 1 chr4D.!!$R1 687
3 TraesCS4A01G154100 chr4D 208480959 208481647 688 True 950.000 950 91.6060 80 767 1 chr4D.!!$R2 687
4 TraesCS4A01G154100 chr4B 200651858 200657230 5372 False 1914.325 5341 96.5770 878 6243 4 chr4B.!!$F1 5365
5 TraesCS4A01G154100 chr3D 424000844 424001806 962 False 791.000 1317 96.6755 5447 6243 2 chr3D.!!$F2 796
6 TraesCS4A01G154100 chr3B 552441891 552443302 1411 False 978.500 1201 93.5045 2704 3528 2 chr3B.!!$F1 824
7 TraesCS4A01G154100 chr3B 552476491 552477253 762 True 614.000 697 95.6310 5447 6243 2 chr3B.!!$R1 796
8 TraesCS4A01G154100 chr5A 216904449 216905135 686 False 970.000 970 92.1630 80 767 1 chr5A.!!$F1 687
9 TraesCS4A01G154100 chr1A 220067504 220068189 685 False 963.000 963 92.0060 81 767 1 chr1A.!!$F1 686
10 TraesCS4A01G154100 chrUn 109174190 109174876 686 False 959.000 959 91.8840 80 767 1 chrUn.!!$F1 687
11 TraesCS4A01G154100 chr6D 229329813 229330500 687 True 955.000 955 91.7390 80 767 1 chr6D.!!$R2 687
12 TraesCS4A01G154100 chr6D 229349910 229350597 687 True 950.000 950 91.6060 80 767 1 chr6D.!!$R3 687
13 TraesCS4A01G154100 chr1D 210243232 210243918 686 False 953.000 953 91.7270 80 767 1 chr1D.!!$F1 687
14 TraesCS4A01G154100 chr2A 355417377 355418114 737 True 952.000 952 89.9060 80 821 1 chr2A.!!$R1 741
15 TraesCS4A01G154100 chr3A 565042856 565043574 718 True 571.000 580 97.0745 5447 6243 2 chr3A.!!$R2 796

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
875 879 0.030638 CGCGCCAAATAGGATTTGGG 59.969 55.000 25.11 18.06 46.78 4.12 F
1213 1221 0.179119 CTAAGGTTGCTCCCGTACCG 60.179 60.000 0.00 0.00 37.04 4.02 F
1690 1704 0.449388 CCTTCTGTTCGATTGCCAGC 59.551 55.000 0.00 0.00 0.00 4.85 F
1989 2026 1.135721 GGATTCCTGGTGCTGAATTGC 59.864 52.381 0.00 0.00 31.56 3.56 F
2195 2232 1.203287 GCTTTTGGGGACATGAGCTTC 59.797 52.381 0.00 0.00 42.23 3.86 F
2469 2506 1.782201 AAGGGGCTCAGTGATGCACA 61.782 55.000 15.65 0.00 36.74 4.57 F
3013 3057 2.114838 GATGAGGGCTGATGGGGC 59.885 66.667 0.00 0.00 0.00 5.80 F
4739 4835 2.042639 ATTGATGCACCCCCAGCC 60.043 61.111 0.00 0.00 0.00 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1989 2026 0.109179 CCCATGTCACCAACATTGCG 60.109 55.000 0.00 0.0 46.73 4.85 R
2045 2082 0.250081 GCCTTCTCATCTTAGCCCCG 60.250 60.000 0.00 0.0 0.00 5.73 R
3611 3661 0.035725 TGCTCCAGGACTCAATGCAG 60.036 55.000 0.00 0.0 0.00 4.41 R
3829 3882 5.817296 TGTGCCAGTAAGCAATATTCTACAG 59.183 40.000 0.00 0.0 46.19 2.74 R
4167 4220 0.251916 TCGATCATCGGCAAGGGTTT 59.748 50.000 7.33 0.0 40.88 3.27 R
4403 4498 1.866269 TCAGATAGTCCCTCCATCCCA 59.134 52.381 0.00 0.0 0.00 4.37 R
4809 4905 1.746615 AGCAGCGTGTGGCCTAATG 60.747 57.895 3.32 0.0 45.17 1.90 R
5706 6666 1.549203 CTTGTTGTATGCAGGGGCTT 58.451 50.000 0.00 0.0 41.91 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.203015 CATCGGATTCGGGGCGTT 60.203 61.111 0.00 0.00 36.95 4.84
19 20 1.068417 CATCGGATTCGGGGCGTTA 59.932 57.895 0.00 0.00 36.95 3.18
20 21 1.068585 ATCGGATTCGGGGCGTTAC 59.931 57.895 0.00 0.00 36.95 2.50
21 22 1.678598 ATCGGATTCGGGGCGTTACA 61.679 55.000 0.00 0.00 36.95 2.41
23 24 1.219522 CGGATTCGGGGCGTTACATC 61.220 60.000 0.00 0.00 0.00 3.06
25 26 1.219522 GATTCGGGGCGTTACATCGG 61.220 60.000 0.00 0.00 0.00 4.18
26 27 2.653953 ATTCGGGGCGTTACATCGGG 62.654 60.000 0.00 0.00 0.00 5.14
29 30 4.171103 GGGCGTTACATCGGGGCT 62.171 66.667 0.00 0.00 0.00 5.19
30 31 2.124860 GGCGTTACATCGGGGCTT 60.125 61.111 0.00 0.00 0.00 4.35
31 32 2.469516 GGCGTTACATCGGGGCTTG 61.470 63.158 0.00 0.00 0.00 4.01
32 33 2.469516 GCGTTACATCGGGGCTTGG 61.470 63.158 0.00 0.00 0.00 3.61
36 37 1.632018 TTACATCGGGGCTTGGGGAG 61.632 60.000 0.00 0.00 0.00 4.30
37 38 2.539277 TACATCGGGGCTTGGGGAGA 62.539 60.000 0.00 0.00 0.00 3.71
39 40 2.378634 ATCGGGGCTTGGGGAGAAG 61.379 63.158 0.00 0.00 0.00 2.85
40 41 3.330720 CGGGGCTTGGGGAGAAGT 61.331 66.667 0.00 0.00 0.00 3.01
41 42 2.677848 GGGGCTTGGGGAGAAGTC 59.322 66.667 0.00 0.00 0.00 3.01
42 43 2.677848 GGGCTTGGGGAGAAGTCC 59.322 66.667 0.00 0.00 40.46 3.85
43 44 1.925972 GGGCTTGGGGAGAAGTCCT 60.926 63.158 0.00 0.00 43.38 3.85
44 45 0.620700 GGGCTTGGGGAGAAGTCCTA 60.621 60.000 0.00 0.00 43.38 2.94
45 46 0.833949 GGCTTGGGGAGAAGTCCTAG 59.166 60.000 0.00 0.00 43.36 3.02
46 47 1.574263 GCTTGGGGAGAAGTCCTAGT 58.426 55.000 0.00 0.00 43.36 2.57
47 48 1.208293 GCTTGGGGAGAAGTCCTAGTG 59.792 57.143 0.00 0.00 43.36 2.74
48 49 2.541466 CTTGGGGAGAAGTCCTAGTGT 58.459 52.381 0.00 0.00 43.36 3.55
49 50 3.709587 CTTGGGGAGAAGTCCTAGTGTA 58.290 50.000 0.00 0.00 43.36 2.90
50 51 3.097342 TGGGGAGAAGTCCTAGTGTAC 57.903 52.381 0.00 0.00 43.36 2.90
51 52 2.380932 TGGGGAGAAGTCCTAGTGTACA 59.619 50.000 0.00 0.00 43.36 2.90
52 53 3.012502 TGGGGAGAAGTCCTAGTGTACAT 59.987 47.826 0.00 0.00 43.36 2.29
53 54 3.385111 GGGGAGAAGTCCTAGTGTACATG 59.615 52.174 0.00 0.00 43.36 3.21
55 56 4.339814 GGGAGAAGTCCTAGTGTACATGAG 59.660 50.000 0.00 0.00 43.36 2.90
56 57 4.339814 GGAGAAGTCCTAGTGTACATGAGG 59.660 50.000 16.38 16.38 40.17 3.86
57 58 5.194432 GAGAAGTCCTAGTGTACATGAGGA 58.806 45.833 19.65 19.65 35.69 3.71
58 59 5.772004 AGAAGTCCTAGTGTACATGAGGAT 58.228 41.667 23.99 13.91 40.19 3.24
59 60 5.596361 AGAAGTCCTAGTGTACATGAGGATG 59.404 44.000 23.99 4.45 40.19 3.51
60 61 5.130705 AGTCCTAGTGTACATGAGGATGA 57.869 43.478 23.99 6.82 40.19 2.92
62 63 5.772672 AGTCCTAGTGTACATGAGGATGATC 59.227 44.000 23.99 14.90 40.19 2.92
63 64 5.536538 GTCCTAGTGTACATGAGGATGATCA 59.463 44.000 23.99 0.00 40.19 2.92
64 65 6.210385 GTCCTAGTGTACATGAGGATGATCAT 59.790 42.308 23.99 8.25 40.19 2.45
65 66 7.394641 GTCCTAGTGTACATGAGGATGATCATA 59.605 40.741 23.99 0.00 40.19 2.15
66 67 7.613411 TCCTAGTGTACATGAGGATGATCATAG 59.387 40.741 19.65 0.00 33.05 2.23
67 68 7.613411 CCTAGTGTACATGAGGATGATCATAGA 59.387 40.741 17.22 0.00 33.59 1.98
68 69 7.846101 AGTGTACATGAGGATGATCATAGAA 57.154 36.000 8.54 0.00 33.59 2.10
69 70 8.433249 AGTGTACATGAGGATGATCATAGAAT 57.567 34.615 8.54 0.00 33.59 2.40
71 72 9.579768 GTGTACATGAGGATGATCATAGAATAC 57.420 37.037 8.54 6.16 33.59 1.89
72 73 9.539194 TGTACATGAGGATGATCATAGAATACT 57.461 33.333 8.54 0.00 33.59 2.12
74 75 8.076910 ACATGAGGATGATCATAGAATACTCC 57.923 38.462 8.54 3.79 33.59 3.85
76 77 5.126222 TGAGGATGATCATAGAATACTCCGC 59.874 44.000 8.54 6.36 0.00 5.54
77 78 5.019470 AGGATGATCATAGAATACTCCGCA 58.981 41.667 8.54 0.00 0.00 5.69
114 115 2.041620 ACAAATGAAGGGCCTAGCTTGA 59.958 45.455 6.41 0.00 0.00 3.02
140 141 4.670765 AGAAAGATGAACCTTGGAGCAAT 58.329 39.130 0.00 0.00 0.00 3.56
184 185 0.882927 CGCAAGGGGAACAAGAACGA 60.883 55.000 0.00 0.00 0.00 3.85
243 244 2.502142 ATGAGTGCATGAAGCCTTGA 57.498 45.000 0.00 0.00 44.83 3.02
283 284 5.107259 TGTCACTTCATAAATTTCGTCCACG 60.107 40.000 0.00 0.00 41.45 4.94
306 307 4.100189 GGACTATTCTAGGTGCTGTGTCAT 59.900 45.833 0.00 0.00 0.00 3.06
369 371 8.691661 TGATTATAGGCAATTTTTAGAGTCCC 57.308 34.615 0.00 0.00 0.00 4.46
400 402 3.154710 GGAAACAAGAGTTAGGGTTGGG 58.845 50.000 0.00 0.00 36.84 4.12
484 486 6.239402 CCTTAGGGCATCATTTAGATTTTGGG 60.239 42.308 0.00 0.00 33.72 4.12
485 487 4.882559 AGGGCATCATTTAGATTTTGGGA 58.117 39.130 0.00 0.00 33.72 4.37
491 493 8.257306 GGCATCATTTAGATTTTGGGAGTTTTA 58.743 33.333 0.00 0.00 33.72 1.52
590 592 6.735556 AGAACCCCATCTTGATCAATAAAGT 58.264 36.000 8.96 0.00 0.00 2.66
637 640 5.048224 CCAGATTGCAATCTCAGTTTCTTGT 60.048 40.000 33.95 10.78 43.65 3.16
646 649 7.915397 GCAATCTCAGTTTCTTGTTTGTTCTTA 59.085 33.333 0.00 0.00 0.00 2.10
652 655 8.573035 TCAGTTTCTTGTTTGTTCTTAGTTTGT 58.427 29.630 0.00 0.00 0.00 2.83
659 662 5.122554 TGTTTGTTCTTAGTTTGTTCGCAGA 59.877 36.000 0.00 0.00 0.00 4.26
703 706 2.819984 ATCGTGCTCCGGCATGGTTT 62.820 55.000 0.00 0.00 45.49 3.27
767 771 1.434555 TTTGCATGTTCGTAGTCGGG 58.565 50.000 0.00 0.00 37.69 5.14
788 792 3.495100 GGTAGCCACCATCTCATCGAAAT 60.495 47.826 0.00 0.00 45.04 2.17
791 795 4.978099 AGCCACCATCTCATCGAAATATT 58.022 39.130 0.00 0.00 0.00 1.28
798 802 5.942236 CCATCTCATCGAAATATTGGGACAT 59.058 40.000 0.00 0.00 39.30 3.06
799 803 7.105588 CCATCTCATCGAAATATTGGGACATA 58.894 38.462 0.00 0.00 39.30 2.29
800 804 7.772292 CCATCTCATCGAAATATTGGGACATAT 59.228 37.037 0.00 0.00 39.30 1.78
815 819 5.369404 TGGGACATATTTGCCTCTATCAAGA 59.631 40.000 0.82 0.00 0.00 3.02
828 832 5.735285 TCTATCAAGAGATATGCACCCTG 57.265 43.478 0.00 0.00 36.21 4.45
829 833 5.150715 TCTATCAAGAGATATGCACCCTGT 58.849 41.667 0.00 0.00 36.21 4.00
830 834 6.314917 TCTATCAAGAGATATGCACCCTGTA 58.685 40.000 0.00 0.00 36.21 2.74
831 835 6.956435 TCTATCAAGAGATATGCACCCTGTAT 59.044 38.462 0.00 0.00 36.21 2.29
832 836 5.474578 TCAAGAGATATGCACCCTGTATC 57.525 43.478 0.00 0.00 0.00 2.24
833 837 4.901250 TCAAGAGATATGCACCCTGTATCA 59.099 41.667 6.95 0.00 0.00 2.15
834 838 5.366477 TCAAGAGATATGCACCCTGTATCAA 59.634 40.000 6.95 0.00 0.00 2.57
835 839 5.894298 AGAGATATGCACCCTGTATCAAA 57.106 39.130 6.95 0.00 0.00 2.69
836 840 6.445451 AGAGATATGCACCCTGTATCAAAT 57.555 37.500 6.95 0.00 0.00 2.32
837 841 6.236409 AGAGATATGCACCCTGTATCAAATG 58.764 40.000 6.95 0.00 0.00 2.32
838 842 4.763793 AGATATGCACCCTGTATCAAATGC 59.236 41.667 6.95 0.00 0.00 3.56
839 843 2.212812 TGCACCCTGTATCAAATGCA 57.787 45.000 0.00 0.00 40.57 3.96
840 844 2.737544 TGCACCCTGTATCAAATGCAT 58.262 42.857 0.00 0.00 38.11 3.96
841 845 3.895998 TGCACCCTGTATCAAATGCATA 58.104 40.909 0.00 0.00 38.11 3.14
842 846 4.472496 TGCACCCTGTATCAAATGCATAT 58.528 39.130 0.00 0.00 38.11 1.78
843 847 4.894705 TGCACCCTGTATCAAATGCATATT 59.105 37.500 0.00 0.00 38.11 1.28
844 848 5.009911 TGCACCCTGTATCAAATGCATATTC 59.990 40.000 0.00 0.00 38.11 1.75
845 849 5.692814 CACCCTGTATCAAATGCATATTCG 58.307 41.667 0.00 0.00 0.00 3.34
846 850 4.761739 ACCCTGTATCAAATGCATATTCGG 59.238 41.667 0.00 0.00 0.00 4.30
847 851 4.379813 CCCTGTATCAAATGCATATTCGGC 60.380 45.833 0.00 0.00 0.00 5.54
848 852 4.397382 CTGTATCAAATGCATATTCGGCG 58.603 43.478 0.00 0.00 0.00 6.46
849 853 2.336554 ATCAAATGCATATTCGGCGC 57.663 45.000 0.00 0.00 0.00 6.53
850 854 1.308047 TCAAATGCATATTCGGCGCT 58.692 45.000 7.64 0.00 0.00 5.92
851 855 1.675483 TCAAATGCATATTCGGCGCTT 59.325 42.857 7.64 0.00 0.00 4.68
852 856 2.875317 TCAAATGCATATTCGGCGCTTA 59.125 40.909 7.64 0.00 0.00 3.09
853 857 3.313803 TCAAATGCATATTCGGCGCTTAA 59.686 39.130 7.64 1.79 0.00 1.85
854 858 3.542712 AATGCATATTCGGCGCTTAAG 57.457 42.857 7.64 0.00 0.00 1.85
855 859 1.225855 TGCATATTCGGCGCTTAAGG 58.774 50.000 7.64 0.00 0.00 2.69
856 860 0.110192 GCATATTCGGCGCTTAAGGC 60.110 55.000 7.64 6.03 37.64 4.35
871 875 3.432186 GGCGCGCCAAATAGGATT 58.568 55.556 43.55 0.00 41.22 3.01
872 876 1.733526 GGCGCGCCAAATAGGATTT 59.266 52.632 43.55 0.00 41.22 2.17
873 877 0.594796 GGCGCGCCAAATAGGATTTG 60.595 55.000 43.55 5.17 41.22 2.32
875 879 0.030638 CGCGCCAAATAGGATTTGGG 59.969 55.000 25.11 18.06 46.78 4.12
876 880 1.111277 GCGCCAAATAGGATTTGGGT 58.889 50.000 25.11 0.00 46.78 4.51
880 884 4.202212 GCGCCAAATAGGATTTGGGTAATT 60.202 41.667 25.11 0.00 46.78 1.40
944 952 4.591072 GGCCCACAGTTTCTCTCTCTATAT 59.409 45.833 0.00 0.00 0.00 0.86
946 954 5.538433 GCCCACAGTTTCTCTCTCTATATCT 59.462 44.000 0.00 0.00 0.00 1.98
947 955 6.516527 GCCCACAGTTTCTCTCTCTATATCTG 60.517 46.154 0.00 0.00 0.00 2.90
948 956 6.549364 CCCACAGTTTCTCTCTCTATATCTGT 59.451 42.308 0.00 0.00 34.62 3.41
949 957 7.069331 CCCACAGTTTCTCTCTCTATATCTGTT 59.931 40.741 0.00 0.00 32.48 3.16
950 958 8.474025 CCACAGTTTCTCTCTCTATATCTGTTT 58.526 37.037 0.00 0.00 32.48 2.83
951 959 9.515020 CACAGTTTCTCTCTCTATATCTGTTTC 57.485 37.037 0.00 0.00 32.48 2.78
952 960 9.474313 ACAGTTTCTCTCTCTATATCTGTTTCT 57.526 33.333 0.00 0.00 31.02 2.52
953 961 9.950680 CAGTTTCTCTCTCTATATCTGTTTCTC 57.049 37.037 0.00 0.00 0.00 2.87
954 962 9.920946 AGTTTCTCTCTCTATATCTGTTTCTCT 57.079 33.333 0.00 0.00 0.00 3.10
956 964 8.918202 TTCTCTCTCTATATCTGTTTCTCTCC 57.082 38.462 0.00 0.00 0.00 3.71
957 965 7.458397 TCTCTCTCTATATCTGTTTCTCTCCC 58.542 42.308 0.00 0.00 0.00 4.30
958 966 7.294720 TCTCTCTCTATATCTGTTTCTCTCCCT 59.705 40.741 0.00 0.00 0.00 4.20
959 967 7.821566 TCTCTCTATATCTGTTTCTCTCCCTT 58.178 38.462 0.00 0.00 0.00 3.95
960 968 7.942341 TCTCTCTATATCTGTTTCTCTCCCTTC 59.058 40.741 0.00 0.00 0.00 3.46
961 969 7.007723 TCTCTATATCTGTTTCTCTCCCTTCC 58.992 42.308 0.00 0.00 0.00 3.46
962 970 6.683537 TCTATATCTGTTTCTCTCCCTTCCA 58.316 40.000 0.00 0.00 0.00 3.53
963 971 5.885449 ATATCTGTTTCTCTCCCTTCCAG 57.115 43.478 0.00 0.00 0.00 3.86
964 972 2.260822 TCTGTTTCTCTCCCTTCCAGG 58.739 52.381 0.00 0.00 34.30 4.45
965 973 1.981495 CTGTTTCTCTCCCTTCCAGGT 59.019 52.381 0.00 0.00 31.93 4.00
1002 1010 2.114616 GGGAGAGAGAAAGGCAGATGA 58.885 52.381 0.00 0.00 0.00 2.92
1193 1201 0.882042 CTCCATCGCAATCCCCTTCG 60.882 60.000 0.00 0.00 0.00 3.79
1210 1218 0.966875 TCGCTAAGGTTGCTCCCGTA 60.967 55.000 0.00 0.00 36.75 4.02
1213 1221 0.179119 CTAAGGTTGCTCCCGTACCG 60.179 60.000 0.00 0.00 37.04 4.02
1253 1261 5.764686 TCTCTTCACTGCTAATTTTGCTTGA 59.235 36.000 4.54 4.52 0.00 3.02
1256 1264 3.888323 TCACTGCTAATTTTGCTTGACCA 59.112 39.130 4.54 0.00 0.00 4.02
1290 1298 5.067954 TCGTCCATCGGTTTAGATAGATCA 58.932 41.667 0.00 0.00 40.32 2.92
1312 1322 2.027688 GCTTACTCGTTGTTTCGATCGG 59.972 50.000 16.41 0.00 39.12 4.18
1331 1341 3.057315 TCGGTTTCTTCGGTTCGTTATCT 60.057 43.478 0.00 0.00 0.00 1.98
1444 1454 3.020984 GGGTTTTGCCATCTTAATCGGA 58.979 45.455 0.00 0.00 39.65 4.55
1524 1538 8.905850 TGCAGTTGATGACATTATGATATTTGT 58.094 29.630 0.00 0.00 0.00 2.83
1525 1539 9.177304 GCAGTTGATGACATTATGATATTTGTG 57.823 33.333 0.00 0.00 0.00 3.33
1552 1566 1.490693 CTCGCGGATTTGGACCATCG 61.491 60.000 6.13 0.00 0.00 3.84
1690 1704 0.449388 CCTTCTGTTCGATTGCCAGC 59.551 55.000 0.00 0.00 0.00 4.85
1700 1714 3.609853 TCGATTGCCAGCTTTATGTCTT 58.390 40.909 0.00 0.00 0.00 3.01
1719 1733 7.985634 TGTCTTGTTTAACAAATTCTTCTGC 57.014 32.000 11.80 0.00 37.69 4.26
1748 1762 6.209361 GTCCAAATCTTCTTGTGGTTTCTTC 58.791 40.000 0.00 0.00 32.68 2.87
1804 1819 2.100584 TGTTCACATGTGGTTTTGCCTC 59.899 45.455 25.16 6.58 38.35 4.70
1890 1927 1.674359 TGTGTGATTTGAGCCGTGTT 58.326 45.000 0.00 0.00 0.00 3.32
1989 2026 1.135721 GGATTCCTGGTGCTGAATTGC 59.864 52.381 0.00 0.00 31.56 3.56
2045 2082 1.405661 GGTAGTACTTCACAGGCAGGC 60.406 57.143 0.00 0.00 0.00 4.85
2110 2147 6.484308 ACAATGTATGATTCTGCGATGATTGA 59.516 34.615 0.00 0.00 0.00 2.57
2153 2190 3.272551 AGTTCCCTAGTGATGGTCTACCT 59.727 47.826 0.02 0.00 36.82 3.08
2195 2232 1.203287 GCTTTTGGGGACATGAGCTTC 59.797 52.381 0.00 0.00 42.23 3.86
2238 2275 6.692486 TCTCTCACAAGTACCAGAGATTTTC 58.308 40.000 0.00 0.00 37.15 2.29
2239 2276 5.794894 TCTCACAAGTACCAGAGATTTTCC 58.205 41.667 0.00 0.00 32.57 3.13
2320 2357 3.756434 CCAGATGTTACATTGAACCCGTT 59.244 43.478 0.00 0.00 0.00 4.44
2369 2406 2.238942 TGACGTTCTGTGCTGAACAT 57.761 45.000 17.65 6.52 44.59 2.71
2376 2413 4.847757 CGTTCTGTGCTGAACATGTTAATG 59.152 41.667 11.95 5.87 44.59 1.90
2405 2442 3.489785 CAGACGAACTAACTGTTGGACAC 59.510 47.826 11.04 1.26 39.30 3.67
2432 2469 4.098914 ACAAGCTTACAGATTTCCACCA 57.901 40.909 0.00 0.00 0.00 4.17
2434 2471 3.788227 AGCTTACAGATTTCCACCACA 57.212 42.857 0.00 0.00 0.00 4.17
2448 2485 3.071023 TCCACCACACTTCGAGAATTTCT 59.929 43.478 0.00 0.00 0.00 2.52
2469 2506 1.782201 AAGGGGCTCAGTGATGCACA 61.782 55.000 15.65 0.00 36.74 4.57
2479 2516 3.200605 TCAGTGATGCACAACCTGGATAT 59.799 43.478 0.00 0.00 36.74 1.63
2507 2544 3.200825 CCAGTGATCCTTACCACCAATCT 59.799 47.826 0.00 0.00 34.00 2.40
2511 2548 3.266772 TGATCCTTACCACCAATCTGCTT 59.733 43.478 0.00 0.00 0.00 3.91
2576 2613 3.708631 AGTCTCAGCTGTATGCACCTTAT 59.291 43.478 14.67 0.00 45.94 1.73
2577 2614 4.895889 AGTCTCAGCTGTATGCACCTTATA 59.104 41.667 14.67 0.00 45.94 0.98
2579 2616 4.895889 TCTCAGCTGTATGCACCTTATAGT 59.104 41.667 14.67 0.00 45.94 2.12
2632 2669 3.916359 TGGTACAGAAACACCAAGACA 57.084 42.857 0.00 0.00 41.83 3.41
2659 2696 3.651206 TGCTGCAACCACATTATGTTTG 58.349 40.909 0.00 0.13 0.00 2.93
2845 2882 4.081420 TCAGAAGAGAAATACCCAGCTGAC 60.081 45.833 17.39 0.00 0.00 3.51
2864 2901 5.771469 CTGACCAGTTTTCATTGCACATTA 58.229 37.500 0.00 0.00 0.00 1.90
2971 3015 9.397280 CCATCAGATTTCAGATAATATCAGCAT 57.603 33.333 2.84 0.00 0.00 3.79
3013 3057 2.114838 GATGAGGGCTGATGGGGC 59.885 66.667 0.00 0.00 0.00 5.80
3365 3412 6.398234 TTTGGCAACTATTTAGTGCAGAAA 57.602 33.333 0.00 0.00 36.50 2.52
3419 3466 6.147821 GGATGCGCATATTATGTGAAGTTACT 59.852 38.462 25.40 0.00 43.24 2.24
3440 3487 6.726490 ACTAAAACGCCTGGAGATCTTATA 57.274 37.500 3.87 0.00 0.00 0.98
3611 3661 5.107065 CGGATCAAGTTTCTAAGGTTGTGTC 60.107 44.000 0.00 0.00 0.00 3.67
3716 3766 2.417651 CGGAGTCCAAAGCGGTATGTTA 60.418 50.000 10.49 0.00 35.57 2.41
3796 3846 6.312672 GCATTCAAGTTGTTTGTGTTAAACCT 59.687 34.615 2.11 0.00 38.01 3.50
3799 3849 4.792521 AGTTGTTTGTGTTAAACCTGCA 57.207 36.364 0.00 0.00 0.00 4.41
3873 3926 7.704472 TGGCACACAAGTTTCTAATTTTTACTG 59.296 33.333 0.00 0.00 0.00 2.74
3954 4007 3.081061 ACGCACTTTGCATCAGGAATTA 58.919 40.909 0.00 0.00 45.36 1.40
3955 4008 3.505680 ACGCACTTTGCATCAGGAATTAA 59.494 39.130 0.00 0.00 45.36 1.40
4167 4220 9.219603 GTTAAGCAATATTATATCCAGTGCTCA 57.780 33.333 8.89 0.00 39.82 4.26
4244 4297 6.778069 CCCTCTGTCCTGAAATATAGTGAGTA 59.222 42.308 0.00 0.00 0.00 2.59
4278 4362 9.967451 TTGTAAACATCTAGGATACCAAATCAA 57.033 29.630 0.00 0.00 37.17 2.57
4313 4397 8.947055 ATTCACCATAAATTTTAGGTTCATGC 57.053 30.769 10.54 0.00 30.44 4.06
4406 4501 4.695217 AAAACACGTGCTATGTTATGGG 57.305 40.909 17.22 0.00 39.36 4.00
4697 4793 4.923281 GGCAATTTCGTTATTCAAACAGCT 59.077 37.500 0.00 0.00 0.00 4.24
4739 4835 2.042639 ATTGATGCACCCCCAGCC 60.043 61.111 0.00 0.00 0.00 4.85
4782 4878 5.593909 TCAAGTATGTTTAATCATGCAGGGG 59.406 40.000 14.54 4.07 33.91 4.79
4784 4880 2.530460 TGTTTAATCATGCAGGGGCT 57.470 45.000 0.00 0.00 41.91 5.19
4809 4905 0.252197 ATACCACCTTTGTCGAGGCC 59.748 55.000 0.00 0.00 40.65 5.19
4920 5016 1.448985 GAGTTTTGTAGCCATCCGCA 58.551 50.000 0.00 0.00 41.38 5.69
4924 5020 2.745281 GTTTTGTAGCCATCCGCACTTA 59.255 45.455 0.00 0.00 41.38 2.24
5008 5279 7.315247 AGTGTATTTTGCGCATGTATAGAAA 57.685 32.000 12.75 7.35 0.00 2.52
5012 5283 8.332464 TGTATTTTGCGCATGTATAGAAACTAC 58.668 33.333 12.75 9.15 0.00 2.73
5043 5314 7.781548 ATTTTAGCTACATACCACCTTTACG 57.218 36.000 0.00 0.00 0.00 3.18
5044 5315 3.814005 AGCTACATACCACCTTTACGG 57.186 47.619 0.00 0.00 39.35 4.02
5045 5316 3.368248 AGCTACATACCACCTTTACGGA 58.632 45.455 0.00 0.00 36.31 4.69
5046 5317 3.383825 AGCTACATACCACCTTTACGGAG 59.616 47.826 0.00 0.00 36.31 4.63
5048 5319 1.835531 ACATACCACCTTTACGGAGGG 59.164 52.381 6.69 0.00 46.85 4.30
5049 5320 2.112998 CATACCACCTTTACGGAGGGA 58.887 52.381 6.69 0.00 46.85 4.20
5050 5321 1.856629 TACCACCTTTACGGAGGGAG 58.143 55.000 6.69 0.80 46.85 4.30
5057 5328 5.071384 CCACCTTTACGGAGGGAGTAATAAT 59.929 44.000 6.69 0.00 41.31 1.28
5059 5330 7.052248 CACCTTTACGGAGGGAGTAATAATTT 58.948 38.462 6.69 0.00 41.31 1.82
5121 5392 6.212955 TGTAGTTTGCTAAATCTGCCAAAAC 58.787 36.000 0.00 0.00 31.05 2.43
5171 5442 7.334090 AGTTGTATCATCTGCACAATTACTCT 58.666 34.615 0.00 0.00 34.89 3.24
5187 5458 3.834489 ACTCTACAATCCTGGATGCAG 57.166 47.619 10.54 7.35 0.00 4.41
5190 5984 1.142465 CTACAATCCTGGATGCAGGCT 59.858 52.381 27.43 16.43 42.00 4.58
5193 5987 0.627451 AATCCTGGATGCAGGCTTCA 59.373 50.000 27.43 11.57 42.00 3.02
5194 5988 0.627451 ATCCTGGATGCAGGCTTCAA 59.373 50.000 27.43 11.18 42.00 2.69
5197 5991 0.102481 CTGGATGCAGGCTTCAATGC 59.898 55.000 6.28 0.00 42.86 3.56
5208 6002 4.021916 AGGCTTCAATGCTAGCTGAATTT 58.978 39.130 17.23 4.50 37.54 1.82
5214 6008 6.441093 TCAATGCTAGCTGAATTTAACAGG 57.559 37.500 17.23 0.00 36.09 4.00
5217 6011 5.097742 TGCTAGCTGAATTTAACAGGCTA 57.902 39.130 17.23 0.00 36.09 3.93
5218 6012 5.118990 TGCTAGCTGAATTTAACAGGCTAG 58.881 41.667 17.23 13.35 40.52 3.42
5219 6013 5.119694 GCTAGCTGAATTTAACAGGCTAGT 58.880 41.667 7.70 0.00 40.19 2.57
5220 6014 5.586643 GCTAGCTGAATTTAACAGGCTAGTT 59.413 40.000 7.70 7.34 40.19 2.24
5221 6015 6.094186 GCTAGCTGAATTTAACAGGCTAGTTT 59.906 38.462 7.70 0.00 40.19 2.66
5222 6016 7.280205 GCTAGCTGAATTTAACAGGCTAGTTTA 59.720 37.037 7.70 0.00 40.19 2.01
5223 6017 9.331282 CTAGCTGAATTTAACAGGCTAGTTTAT 57.669 33.333 0.00 1.48 37.35 1.40
5224 6018 7.989826 AGCTGAATTTAACAGGCTAGTTTATG 58.010 34.615 7.46 0.00 36.09 1.90
5226 6020 8.889717 GCTGAATTTAACAGGCTAGTTTATGTA 58.110 33.333 7.46 0.00 36.09 2.29
5228 6022 9.953565 TGAATTTAACAGGCTAGTTTATGTACT 57.046 29.630 7.46 0.00 33.07 2.73
5230 6024 7.605410 TTTAACAGGCTAGTTTATGTACTGC 57.395 36.000 7.46 0.00 33.07 4.40
5231 6025 4.819105 ACAGGCTAGTTTATGTACTGCA 57.181 40.909 0.00 0.00 0.00 4.41
5232 6026 4.504858 ACAGGCTAGTTTATGTACTGCAC 58.495 43.478 0.00 0.00 0.00 4.57
5234 6028 4.568359 CAGGCTAGTTTATGTACTGCACAG 59.432 45.833 0.00 0.00 41.51 3.66
5235 6029 3.871594 GGCTAGTTTATGTACTGCACAGG 59.128 47.826 2.21 0.00 41.51 4.00
5236 6030 4.504858 GCTAGTTTATGTACTGCACAGGT 58.495 43.478 2.21 0.00 41.51 4.00
5237 6031 4.935808 GCTAGTTTATGTACTGCACAGGTT 59.064 41.667 2.21 0.00 41.51 3.50
5239 6033 5.689383 AGTTTATGTACTGCACAGGTTTG 57.311 39.130 2.21 0.00 41.51 2.93
5240 6034 5.373222 AGTTTATGTACTGCACAGGTTTGA 58.627 37.500 2.21 0.00 41.51 2.69
5246 6040 5.804639 TGTACTGCACAGGTTTGAATATCT 58.195 37.500 2.21 0.00 31.89 1.98
5247 6041 6.941857 TGTACTGCACAGGTTTGAATATCTA 58.058 36.000 2.21 0.00 31.89 1.98
5248 6042 6.816640 TGTACTGCACAGGTTTGAATATCTAC 59.183 38.462 2.21 0.00 31.89 2.59
5250 6044 6.237901 ACTGCACAGGTTTGAATATCTACAA 58.762 36.000 2.21 0.00 0.00 2.41
5251 6045 6.372659 ACTGCACAGGTTTGAATATCTACAAG 59.627 38.462 2.21 0.00 0.00 3.16
5253 6047 6.595326 TGCACAGGTTTGAATATCTACAAGAG 59.405 38.462 0.00 0.00 0.00 2.85
5255 6049 7.334421 GCACAGGTTTGAATATCTACAAGAGAA 59.666 37.037 0.00 0.00 37.85 2.87
5257 6051 9.220767 ACAGGTTTGAATATCTACAAGAGAAAC 57.779 33.333 0.00 0.00 37.85 2.78
5258 6052 9.442047 CAGGTTTGAATATCTACAAGAGAAACT 57.558 33.333 0.00 0.00 37.85 2.66
5269 6063 8.644318 TCTACAAGAGAAACTAAAACACTGAC 57.356 34.615 0.00 0.00 0.00 3.51
5270 6064 8.475639 TCTACAAGAGAAACTAAAACACTGACT 58.524 33.333 0.00 0.00 0.00 3.41
5271 6065 7.923414 ACAAGAGAAACTAAAACACTGACTT 57.077 32.000 0.00 0.00 0.00 3.01
5272 6066 7.752695 ACAAGAGAAACTAAAACACTGACTTG 58.247 34.615 0.00 0.00 36.81 3.16
5273 6067 7.390718 ACAAGAGAAACTAAAACACTGACTTGT 59.609 33.333 0.00 0.00 38.34 3.16
5274 6068 7.923414 AGAGAAACTAAAACACTGACTTGTT 57.077 32.000 0.00 0.00 41.62 2.83
5276 6070 8.451748 AGAGAAACTAAAACACTGACTTGTTTC 58.548 33.333 0.00 0.00 46.68 2.78
5277 6071 8.106247 AGAAACTAAAACACTGACTTGTTTCA 57.894 30.769 14.69 0.00 46.68 2.69
5278 6072 8.573035 AGAAACTAAAACACTGACTTGTTTCAA 58.427 29.630 14.69 0.00 46.68 2.69
5279 6073 9.187455 GAAACTAAAACACTGACTTGTTTCAAA 57.813 29.630 0.00 0.00 46.68 2.69
5280 6074 9.535878 AAACTAAAACACTGACTTGTTTCAAAA 57.464 25.926 1.92 0.00 46.68 2.44
5281 6075 9.535878 AACTAAAACACTGACTTGTTTCAAAAA 57.464 25.926 1.92 0.00 46.68 1.94
5282 6076 9.705290 ACTAAAACACTGACTTGTTTCAAAAAT 57.295 25.926 1.92 0.00 46.68 1.82
5287 6081 9.482627 AACACTGACTTGTTTCAAAAATTTACA 57.517 25.926 0.00 0.00 36.22 2.41
5288 6082 8.921670 ACACTGACTTGTTTCAAAAATTTACAC 58.078 29.630 0.00 0.00 0.00 2.90
5300 6094 4.789012 AAATTTACACTGACATGCTGGG 57.211 40.909 0.00 0.00 0.00 4.45
5317 6111 1.202510 TGGGCAACACATTTCTGCAAC 60.203 47.619 0.00 0.00 37.83 4.17
5337 6131 4.563337 ACGGCTTTAAGAAACAAGGAAC 57.437 40.909 0.00 0.00 0.00 3.62
5407 6201 7.169035 CAAAGACTTTGTTCCACAATGAATG 57.831 36.000 18.12 0.00 38.00 2.67
5408 6202 4.874970 AGACTTTGTTCCACAATGAATGC 58.125 39.130 8.94 0.00 38.00 3.56
5409 6203 4.341806 AGACTTTGTTCCACAATGAATGCA 59.658 37.500 8.94 0.00 38.00 3.96
5410 6204 5.011329 AGACTTTGTTCCACAATGAATGCAT 59.989 36.000 8.94 0.00 38.00 3.96
5411 6205 4.992319 ACTTTGTTCCACAATGAATGCATG 59.008 37.500 0.00 0.00 38.00 4.06
5412 6206 4.868314 TTGTTCCACAATGAATGCATGA 57.132 36.364 0.00 0.00 32.34 3.07
5413 6207 4.177165 TGTTCCACAATGAATGCATGAC 57.823 40.909 0.00 0.00 34.26 3.06
5414 6208 3.827876 TGTTCCACAATGAATGCATGACT 59.172 39.130 0.00 0.00 34.26 3.41
5415 6209 5.008980 TGTTCCACAATGAATGCATGACTA 58.991 37.500 0.00 0.00 34.26 2.59
5416 6210 5.476254 TGTTCCACAATGAATGCATGACTAA 59.524 36.000 0.00 0.00 34.26 2.24
5417 6211 5.823209 TCCACAATGAATGCATGACTAAG 57.177 39.130 0.00 0.00 34.26 2.18
5418 6212 5.499313 TCCACAATGAATGCATGACTAAGA 58.501 37.500 0.00 0.00 34.26 2.10
5419 6213 5.945191 TCCACAATGAATGCATGACTAAGAA 59.055 36.000 0.00 0.00 34.26 2.52
5420 6214 6.433716 TCCACAATGAATGCATGACTAAGAAA 59.566 34.615 0.00 0.00 34.26 2.52
5421 6215 6.750501 CCACAATGAATGCATGACTAAGAAAG 59.249 38.462 0.00 0.00 34.26 2.62
5422 6216 7.362315 CCACAATGAATGCATGACTAAGAAAGA 60.362 37.037 0.00 0.00 34.26 2.52
5423 6217 7.696872 CACAATGAATGCATGACTAAGAAAGAG 59.303 37.037 0.00 0.00 34.26 2.85
5424 6218 7.609146 ACAATGAATGCATGACTAAGAAAGAGA 59.391 33.333 0.00 0.00 34.26 3.10
5425 6219 8.622157 CAATGAATGCATGACTAAGAAAGAGAT 58.378 33.333 0.00 0.00 34.26 2.75
5426 6220 9.842775 AATGAATGCATGACTAAGAAAGAGATA 57.157 29.630 0.00 0.00 34.26 1.98
5427 6221 8.654230 TGAATGCATGACTAAGAAAGAGATAC 57.346 34.615 0.00 0.00 0.00 2.24
5428 6222 8.260114 TGAATGCATGACTAAGAAAGAGATACA 58.740 33.333 0.00 0.00 0.00 2.29
5429 6223 9.102757 GAATGCATGACTAAGAAAGAGATACAA 57.897 33.333 0.00 0.00 0.00 2.41
5430 6224 8.659925 ATGCATGACTAAGAAAGAGATACAAG 57.340 34.615 0.00 0.00 0.00 3.16
5431 6225 7.840931 TGCATGACTAAGAAAGAGATACAAGA 58.159 34.615 0.00 0.00 0.00 3.02
5432 6226 7.761704 TGCATGACTAAGAAAGAGATACAAGAC 59.238 37.037 0.00 0.00 0.00 3.01
5433 6227 7.978975 GCATGACTAAGAAAGAGATACAAGACT 59.021 37.037 0.00 0.00 0.00 3.24
5434 6228 9.868277 CATGACTAAGAAAGAGATACAAGACTT 57.132 33.333 0.00 0.00 0.00 3.01
5436 6230 9.698309 TGACTAAGAAAGAGATACAAGACTTTG 57.302 33.333 0.00 0.00 40.24 2.77
5441 6235 8.964476 AGAAAGAGATACAAGACTTTGTTTCA 57.036 30.769 11.51 0.00 45.01 2.69
5442 6236 8.831550 AGAAAGAGATACAAGACTTTGTTTCAC 58.168 33.333 11.51 6.82 45.01 3.18
5443 6237 8.506168 AAAGAGATACAAGACTTTGTTTCACA 57.494 30.769 11.51 0.00 45.01 3.58
5444 6238 8.506168 AAGAGATACAAGACTTTGTTTCACAA 57.494 30.769 11.51 0.00 45.01 3.33
5508 6302 4.708421 AGCATAATGTTTCCAGCTGAACAT 59.292 37.500 21.87 21.87 31.05 2.71
5684 6644 1.073706 ACCACCACCTCTTCCACCT 60.074 57.895 0.00 0.00 0.00 4.00
5755 6867 8.682710 AGCAAAAGACTATCAAACAACTAACAA 58.317 29.630 0.00 0.00 0.00 2.83
5756 6868 8.958043 GCAAAAGACTATCAAACAACTAACAAG 58.042 33.333 0.00 0.00 0.00 3.16
5766 6878 8.220755 TCAAACAACTAACAAGTTATCAAGCT 57.779 30.769 0.00 0.00 0.00 3.74
5767 6879 8.128582 TCAAACAACTAACAAGTTATCAAGCTG 58.871 33.333 0.00 0.00 0.00 4.24
5768 6880 7.568199 AACAACTAACAAGTTATCAAGCTGT 57.432 32.000 0.00 0.00 0.00 4.40
5769 6881 8.671384 AACAACTAACAAGTTATCAAGCTGTA 57.329 30.769 0.00 0.00 0.00 2.74
5770 6882 8.671384 ACAACTAACAAGTTATCAAGCTGTAA 57.329 30.769 0.00 0.00 0.00 2.41
5771 6883 8.557029 ACAACTAACAAGTTATCAAGCTGTAAC 58.443 33.333 8.21 8.21 0.00 2.50
5772 6884 8.774586 CAACTAACAAGTTATCAAGCTGTAACT 58.225 33.333 11.55 11.55 41.54 2.24
5773 6885 9.991906 AACTAACAAGTTATCAAGCTGTAACTA 57.008 29.630 15.62 4.45 39.52 2.24
5774 6886 9.640963 ACTAACAAGTTATCAAGCTGTAACTAG 57.359 33.333 15.62 12.62 39.52 2.57
5775 6887 9.856488 CTAACAAGTTATCAAGCTGTAACTAGA 57.144 33.333 15.62 5.51 39.52 2.43
5776 6888 8.535690 AACAAGTTATCAAGCTGTAACTAGAC 57.464 34.615 15.62 0.00 39.52 2.59
5777 6889 7.667557 ACAAGTTATCAAGCTGTAACTAGACA 58.332 34.615 15.62 0.00 39.52 3.41
5778 6890 8.148351 ACAAGTTATCAAGCTGTAACTAGACAA 58.852 33.333 15.62 0.00 39.52 3.18
5779 6891 8.988934 CAAGTTATCAAGCTGTAACTAGACAAA 58.011 33.333 15.62 0.00 39.52 2.83
5780 6892 9.726438 AAGTTATCAAGCTGTAACTAGACAAAT 57.274 29.630 15.62 1.69 39.52 2.32
5781 6893 9.155975 AGTTATCAAGCTGTAACTAGACAAATG 57.844 33.333 14.36 0.00 38.87 2.32
5782 6894 5.862924 TCAAGCTGTAACTAGACAAATGC 57.137 39.130 0.00 0.00 0.00 3.56
5783 6895 5.551233 TCAAGCTGTAACTAGACAAATGCT 58.449 37.500 0.00 0.00 31.70 3.79
5784 6896 5.409520 TCAAGCTGTAACTAGACAAATGCTG 59.590 40.000 0.00 0.00 31.06 4.41
5785 6897 5.152623 AGCTGTAACTAGACAAATGCTGA 57.847 39.130 0.00 0.00 29.88 4.26
5786 6898 5.551233 AGCTGTAACTAGACAAATGCTGAA 58.449 37.500 0.00 0.00 29.88 3.02
5787 6899 5.409826 AGCTGTAACTAGACAAATGCTGAAC 59.590 40.000 0.00 0.00 29.88 3.18
5788 6900 5.179368 GCTGTAACTAGACAAATGCTGAACA 59.821 40.000 0.00 0.00 0.00 3.18
5789 6901 6.539649 TGTAACTAGACAAATGCTGAACAC 57.460 37.500 0.00 0.00 0.00 3.32
5790 6902 6.288294 TGTAACTAGACAAATGCTGAACACT 58.712 36.000 0.00 0.00 0.00 3.55
5791 6903 6.765989 TGTAACTAGACAAATGCTGAACACTT 59.234 34.615 0.00 0.00 0.00 3.16
5792 6904 6.699575 AACTAGACAAATGCTGAACACTTT 57.300 33.333 0.00 0.00 0.00 2.66
5793 6905 7.801716 AACTAGACAAATGCTGAACACTTTA 57.198 32.000 0.00 0.00 0.00 1.85
5794 6906 7.986085 ACTAGACAAATGCTGAACACTTTAT 57.014 32.000 0.00 0.00 0.00 1.40
5795 6907 8.396272 ACTAGACAAATGCTGAACACTTTATT 57.604 30.769 0.00 0.00 0.00 1.40
5796 6908 8.850156 ACTAGACAAATGCTGAACACTTTATTT 58.150 29.630 0.00 0.00 0.00 1.40
5797 6909 7.935338 AGACAAATGCTGAACACTTTATTTG 57.065 32.000 0.00 0.00 39.87 2.32
5798 6910 6.925165 AGACAAATGCTGAACACTTTATTTGG 59.075 34.615 0.00 0.00 38.90 3.28
5799 6911 6.581712 ACAAATGCTGAACACTTTATTTGGT 58.418 32.000 0.00 0.00 38.90 3.67
5800 6912 7.047271 ACAAATGCTGAACACTTTATTTGGTT 58.953 30.769 0.00 0.00 38.90 3.67
5801 6913 7.552330 ACAAATGCTGAACACTTTATTTGGTTT 59.448 29.630 0.00 0.00 38.90 3.27
5802 6914 7.713764 AATGCTGAACACTTTATTTGGTTTC 57.286 32.000 0.00 0.00 0.00 2.78
5803 6915 6.463995 TGCTGAACACTTTATTTGGTTTCT 57.536 33.333 0.00 0.00 0.00 2.52
5804 6916 6.503524 TGCTGAACACTTTATTTGGTTTCTC 58.496 36.000 0.00 0.00 0.00 2.87
5805 6917 6.096141 TGCTGAACACTTTATTTGGTTTCTCA 59.904 34.615 0.00 0.00 0.00 3.27
5806 6918 7.147976 GCTGAACACTTTATTTGGTTTCTCAT 58.852 34.615 0.00 0.00 0.00 2.90
5807 6919 7.115378 GCTGAACACTTTATTTGGTTTCTCATG 59.885 37.037 0.00 0.00 0.00 3.07
5808 6920 8.006298 TGAACACTTTATTTGGTTTCTCATGT 57.994 30.769 0.00 0.00 0.00 3.21
5809 6921 7.920151 TGAACACTTTATTTGGTTTCTCATGTG 59.080 33.333 0.00 0.00 0.00 3.21
5810 6922 6.215845 ACACTTTATTTGGTTTCTCATGTGC 58.784 36.000 0.00 0.00 0.00 4.57
5811 6923 6.183360 ACACTTTATTTGGTTTCTCATGTGCA 60.183 34.615 0.00 0.00 0.00 4.57
5812 6924 6.869913 CACTTTATTTGGTTTCTCATGTGCAT 59.130 34.615 0.00 0.00 0.00 3.96
5813 6925 7.385752 CACTTTATTTGGTTTCTCATGTGCATT 59.614 33.333 0.00 0.00 0.00 3.56
5814 6926 7.933033 ACTTTATTTGGTTTCTCATGTGCATTT 59.067 29.630 0.00 0.00 0.00 2.32
5815 6927 8.674263 TTTATTTGGTTTCTCATGTGCATTTT 57.326 26.923 0.00 0.00 0.00 1.82
5816 6928 6.790285 ATTTGGTTTCTCATGTGCATTTTC 57.210 33.333 0.00 0.00 0.00 2.29
5817 6929 4.255833 TGGTTTCTCATGTGCATTTTCC 57.744 40.909 0.00 0.00 0.00 3.13
5818 6930 3.640498 TGGTTTCTCATGTGCATTTTCCA 59.360 39.130 0.00 0.00 0.00 3.53
5819 6931 3.989817 GGTTTCTCATGTGCATTTTCCAC 59.010 43.478 0.00 0.00 0.00 4.02
5820 6932 4.501229 GGTTTCTCATGTGCATTTTCCACA 60.501 41.667 0.00 0.00 46.10 4.17
5827 6939 4.235939 TGTGCATTTTCCACATGTACAC 57.764 40.909 0.00 0.00 40.87 2.90
5828 6940 3.888323 TGTGCATTTTCCACATGTACACT 59.112 39.130 0.00 0.00 40.87 3.55
5829 6941 4.340666 TGTGCATTTTCCACATGTACACTT 59.659 37.500 0.00 0.00 40.87 3.16
5830 6942 5.532779 TGTGCATTTTCCACATGTACACTTA 59.467 36.000 0.00 0.00 40.87 2.24
5831 6943 6.208402 TGTGCATTTTCCACATGTACACTTAT 59.792 34.615 0.00 0.00 40.87 1.73
5832 6944 6.527722 GTGCATTTTCCACATGTACACTTATG 59.472 38.462 0.00 0.00 37.25 1.90
5833 6945 6.035843 GCATTTTCCACATGTACACTTATGG 58.964 40.000 0.00 3.91 0.00 2.74
5834 6946 6.350110 GCATTTTCCACATGTACACTTATGGT 60.350 38.462 0.00 0.00 0.00 3.55
5835 6947 7.148154 GCATTTTCCACATGTACACTTATGGTA 60.148 37.037 0.00 0.00 0.00 3.25
5836 6948 7.675962 TTTTCCACATGTACACTTATGGTAC 57.324 36.000 0.00 0.00 41.11 3.34
5837 6949 6.614694 TTCCACATGTACACTTATGGTACT 57.385 37.500 0.00 0.00 41.27 2.73
5838 6950 6.216801 TCCACATGTACACTTATGGTACTC 57.783 41.667 0.00 0.00 41.27 2.59
5839 6951 5.128171 TCCACATGTACACTTATGGTACTCC 59.872 44.000 0.00 0.00 41.27 3.85
5857 6969 9.051679 TGGTACTCCATTCGTTTCATAATAATG 57.948 33.333 0.00 0.00 39.03 1.90
5858 6970 8.015658 GGTACTCCATTCGTTTCATAATAATGC 58.984 37.037 0.00 0.00 32.76 3.56
5859 6971 7.807977 ACTCCATTCGTTTCATAATAATGCT 57.192 32.000 0.00 0.00 32.76 3.79
5860 6972 8.902540 ACTCCATTCGTTTCATAATAATGCTA 57.097 30.769 0.00 0.00 32.76 3.49
5861 6973 9.337396 ACTCCATTCGTTTCATAATAATGCTAA 57.663 29.630 0.00 0.00 32.76 3.09
5862 6974 9.817365 CTCCATTCGTTTCATAATAATGCTAAG 57.183 33.333 0.00 0.00 32.76 2.18
5863 6975 9.554395 TCCATTCGTTTCATAATAATGCTAAGA 57.446 29.630 0.00 0.00 32.76 2.10
5867 6979 9.663904 TTCGTTTCATAATAATGCTAAGAATGC 57.336 29.630 0.00 0.00 32.76 3.56
5868 6980 9.056005 TCGTTTCATAATAATGCTAAGAATGCT 57.944 29.630 0.00 0.00 32.76 3.79
5869 6981 9.110617 CGTTTCATAATAATGCTAAGAATGCTG 57.889 33.333 0.00 0.00 32.76 4.41
5870 6982 8.909671 GTTTCATAATAATGCTAAGAATGCTGC 58.090 33.333 0.00 0.00 32.76 5.25
5871 6983 7.991084 TCATAATAATGCTAAGAATGCTGCT 57.009 32.000 0.00 0.00 32.76 4.24
5872 6984 7.813645 TCATAATAATGCTAAGAATGCTGCTG 58.186 34.615 0.00 0.00 32.76 4.41
5873 6985 7.662669 TCATAATAATGCTAAGAATGCTGCTGA 59.337 33.333 0.00 0.00 32.76 4.26
5874 6986 6.896021 AATAATGCTAAGAATGCTGCTGAT 57.104 33.333 0.00 0.00 0.00 2.90
5875 6987 7.991084 AATAATGCTAAGAATGCTGCTGATA 57.009 32.000 0.00 0.00 0.00 2.15
5876 6988 8.577048 AATAATGCTAAGAATGCTGCTGATAT 57.423 30.769 0.00 0.00 0.00 1.63
5877 6989 6.896021 AATGCTAAGAATGCTGCTGATATT 57.104 33.333 0.00 0.00 0.00 1.28
5878 6990 6.896021 ATGCTAAGAATGCTGCTGATATTT 57.104 33.333 0.00 0.00 0.00 1.40
5879 6991 6.704289 TGCTAAGAATGCTGCTGATATTTT 57.296 33.333 0.00 0.00 0.00 1.82
5880 6992 7.104043 TGCTAAGAATGCTGCTGATATTTTT 57.896 32.000 0.00 0.00 0.00 1.94
5881 6993 8.224389 TGCTAAGAATGCTGCTGATATTTTTA 57.776 30.769 0.00 0.00 0.00 1.52
5882 6994 8.853126 TGCTAAGAATGCTGCTGATATTTTTAT 58.147 29.630 0.00 0.00 0.00 1.40
5958 7070 4.607293 TTCACAGAGACAGTATGCAAGT 57.393 40.909 0.00 0.00 42.53 3.16
5984 7096 2.682856 TGACACTGCTGGTTTCAAGTTC 59.317 45.455 0.00 0.00 32.46 3.01
5991 7103 3.882888 TGCTGGTTTCAAGTTCGAAGAAT 59.117 39.130 0.00 0.00 45.90 2.40
6065 7177 6.925165 CCATGAAAAGACATGTTGCTAAGTTT 59.075 34.615 0.00 0.00 44.00 2.66
6221 7333 2.306805 AGATGTTGCAATGACTCCCTCA 59.693 45.455 0.59 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.068417 TAACGCCCCGAATCCGATG 59.932 57.895 0.00 0.00 38.22 3.84
5 6 1.219522 CGATGTAACGCCCCGAATCC 61.220 60.000 0.00 0.00 0.00 3.01
6 7 1.219522 CCGATGTAACGCCCCGAATC 61.220 60.000 0.00 0.00 0.00 2.52
7 8 1.227438 CCGATGTAACGCCCCGAAT 60.227 57.895 0.00 0.00 0.00 3.34
8 9 2.184836 CCGATGTAACGCCCCGAA 59.815 61.111 0.00 0.00 0.00 4.30
10 11 4.903010 CCCCGATGTAACGCCCCG 62.903 72.222 0.00 0.00 0.00 5.73
12 13 3.692370 AAGCCCCGATGTAACGCCC 62.692 63.158 0.00 0.00 0.00 6.13
13 14 2.124860 AAGCCCCGATGTAACGCC 60.125 61.111 0.00 0.00 0.00 5.68
15 16 1.817941 CCCAAGCCCCGATGTAACG 60.818 63.158 0.00 0.00 0.00 3.18
16 17 1.453197 CCCCAAGCCCCGATGTAAC 60.453 63.158 0.00 0.00 0.00 2.50
18 19 2.041430 TCCCCAAGCCCCGATGTA 59.959 61.111 0.00 0.00 0.00 2.29
19 20 3.411517 CTCCCCAAGCCCCGATGT 61.412 66.667 0.00 0.00 0.00 3.06
20 21 2.615227 CTTCTCCCCAAGCCCCGATG 62.615 65.000 0.00 0.00 0.00 3.84
21 22 2.286121 TTCTCCCCAAGCCCCGAT 60.286 61.111 0.00 0.00 0.00 4.18
23 24 3.330720 ACTTCTCCCCAAGCCCCG 61.331 66.667 0.00 0.00 0.00 5.73
25 26 0.620700 TAGGACTTCTCCCCAAGCCC 60.621 60.000 0.00 0.00 37.25 5.19
26 27 0.833949 CTAGGACTTCTCCCCAAGCC 59.166 60.000 0.00 0.00 37.25 4.35
28 29 2.541466 ACACTAGGACTTCTCCCCAAG 58.459 52.381 0.00 0.00 37.25 3.61
29 30 2.715763 ACACTAGGACTTCTCCCCAA 57.284 50.000 0.00 0.00 37.25 4.12
30 31 2.380932 TGTACACTAGGACTTCTCCCCA 59.619 50.000 0.00 0.00 37.25 4.96
31 32 3.097342 TGTACACTAGGACTTCTCCCC 57.903 52.381 0.00 0.00 37.25 4.81
32 33 4.279145 TCATGTACACTAGGACTTCTCCC 58.721 47.826 0.00 0.00 37.25 4.30
36 37 5.594725 TCATCCTCATGTACACTAGGACTTC 59.405 44.000 23.70 0.00 40.83 3.01
37 38 5.519808 TCATCCTCATGTACACTAGGACTT 58.480 41.667 23.70 11.28 40.83 3.01
39 40 5.536538 TGATCATCCTCATGTACACTAGGAC 59.463 44.000 23.70 14.67 40.83 3.85
40 41 5.705400 TGATCATCCTCATGTACACTAGGA 58.295 41.667 23.53 23.53 42.17 2.94
41 42 6.602410 ATGATCATCCTCATGTACACTAGG 57.398 41.667 16.11 16.11 34.59 3.02
42 43 8.572855 TCTATGATCATCCTCATGTACACTAG 57.427 38.462 12.53 0.00 36.55 2.57
43 44 8.940397 TTCTATGATCATCCTCATGTACACTA 57.060 34.615 12.53 0.00 36.55 2.74
44 45 7.846101 TTCTATGATCATCCTCATGTACACT 57.154 36.000 12.53 0.00 36.55 3.55
45 46 9.579768 GTATTCTATGATCATCCTCATGTACAC 57.420 37.037 12.53 0.00 36.55 2.90
46 47 9.539194 AGTATTCTATGATCATCCTCATGTACA 57.461 33.333 12.53 0.00 36.55 2.90
48 49 9.194972 GGAGTATTCTATGATCATCCTCATGTA 57.805 37.037 12.53 0.00 36.55 2.29
49 50 7.147932 CGGAGTATTCTATGATCATCCTCATGT 60.148 40.741 12.53 0.00 36.55 3.21
50 51 7.201835 CGGAGTATTCTATGATCATCCTCATG 58.798 42.308 12.53 3.04 36.55 3.07
51 52 6.183360 GCGGAGTATTCTATGATCATCCTCAT 60.183 42.308 12.53 3.39 39.22 2.90
52 53 5.126222 GCGGAGTATTCTATGATCATCCTCA 59.874 44.000 12.53 0.00 0.00 3.86
53 54 5.126222 TGCGGAGTATTCTATGATCATCCTC 59.874 44.000 12.53 8.73 0.00 3.71
55 56 5.330455 TGCGGAGTATTCTATGATCATCC 57.670 43.478 12.53 4.50 0.00 3.51
56 57 6.567959 TGATGCGGAGTATTCTATGATCATC 58.432 40.000 12.53 0.00 28.93 2.92
57 58 6.535963 TGATGCGGAGTATTCTATGATCAT 57.464 37.500 13.81 13.81 28.93 2.45
58 59 5.982890 TGATGCGGAGTATTCTATGATCA 57.017 39.130 0.00 0.00 28.93 2.92
59 60 7.332926 ACAAATGATGCGGAGTATTCTATGATC 59.667 37.037 0.00 0.00 28.93 2.92
60 61 7.164122 ACAAATGATGCGGAGTATTCTATGAT 58.836 34.615 0.00 0.00 28.93 2.45
62 63 6.791887 ACAAATGATGCGGAGTATTCTATG 57.208 37.500 0.00 0.00 28.93 2.23
63 64 7.807977 AAACAAATGATGCGGAGTATTCTAT 57.192 32.000 0.00 0.00 28.93 1.98
64 65 7.471721 CAAAACAAATGATGCGGAGTATTCTA 58.528 34.615 0.00 0.00 28.93 2.10
65 66 6.324819 CAAAACAAATGATGCGGAGTATTCT 58.675 36.000 0.00 0.00 28.93 2.40
66 67 5.004726 GCAAAACAAATGATGCGGAGTATTC 59.995 40.000 0.00 0.00 28.93 1.75
67 68 4.864247 GCAAAACAAATGATGCGGAGTATT 59.136 37.500 0.00 0.00 28.93 1.89
68 69 4.158394 AGCAAAACAAATGATGCGGAGTAT 59.842 37.500 0.00 0.00 43.39 2.12
69 70 3.505680 AGCAAAACAAATGATGCGGAGTA 59.494 39.130 0.00 0.00 43.39 2.59
71 72 2.950433 AGCAAAACAAATGATGCGGAG 58.050 42.857 0.00 0.00 43.39 4.63
72 73 3.383620 AAGCAAAACAAATGATGCGGA 57.616 38.095 0.00 0.00 43.39 5.54
73 74 3.986572 TGTAAGCAAAACAAATGATGCGG 59.013 39.130 0.00 0.00 43.39 5.69
74 75 5.573296 TTGTAAGCAAAACAAATGATGCG 57.427 34.783 0.00 0.00 43.39 4.73
114 115 4.279420 GCTCCAAGGTTCATCTTTCTTGTT 59.721 41.667 0.00 0.00 35.98 2.83
140 141 2.691526 GCCATCATCTCCATGCTTGAAA 59.308 45.455 0.22 0.00 0.00 2.69
184 185 7.227156 AGTCCTGAAATCATCACTTGTAACTT 58.773 34.615 0.00 0.00 33.47 2.66
202 203 3.726557 ATGATGGCTTCAAAGTCCTGA 57.273 42.857 7.20 0.00 38.03 3.86
243 244 8.771920 TGAAGTGACATCTTGTATATTTCGTT 57.228 30.769 0.00 0.00 0.00 3.85
283 284 3.447586 TGACACAGCACCTAGAATAGTCC 59.552 47.826 0.00 0.00 36.82 3.85
306 307 1.567357 GGCCTGGCCCAAAAATAAGA 58.433 50.000 27.77 0.00 44.06 2.10
369 371 4.021102 ACTCTTGTTTCCCCACACATAG 57.979 45.455 0.00 0.00 0.00 2.23
410 412 0.783206 TTTCATGGCCCTTGGAGGAA 59.217 50.000 0.00 0.00 37.67 3.36
491 493 8.345565 CAGCTATGGCGAACTTTTAATCTAAAT 58.654 33.333 0.00 0.00 44.37 1.40
606 608 8.985315 AACTGAGATTGCAATCTGGATATTAA 57.015 30.769 39.54 16.71 45.39 1.40
607 609 8.985315 AAACTGAGATTGCAATCTGGATATTA 57.015 30.769 39.54 15.63 45.39 0.98
637 640 5.804692 TCTGCGAACAAACTAAGAACAAA 57.195 34.783 0.00 0.00 0.00 2.83
646 649 4.819630 TGGTCTATTTTCTGCGAACAAACT 59.180 37.500 0.00 0.00 0.00 2.66
652 655 3.616821 CACGATGGTCTATTTTCTGCGAA 59.383 43.478 0.00 0.00 0.00 4.70
703 706 6.434965 GCTAAACCAACTTTTGAGGGGTTATA 59.565 38.462 0.00 0.00 40.77 0.98
738 741 0.380378 AACATGCAAAACGTCGTGCT 59.620 45.000 20.25 7.10 41.48 4.40
741 744 0.653636 ACGAACATGCAAAACGTCGT 59.346 45.000 8.02 8.02 31.69 4.34
748 751 1.270412 ACCCGACTACGAACATGCAAA 60.270 47.619 0.00 0.00 42.66 3.68
767 771 2.890808 TTCGATGAGATGGTGGCTAC 57.109 50.000 0.00 0.00 0.00 3.58
788 792 7.328404 TGATAGAGGCAAATATGTCCCAATA 57.672 36.000 0.00 0.00 0.00 1.90
791 795 5.369404 TCTTGATAGAGGCAAATATGTCCCA 59.631 40.000 0.00 0.00 0.00 4.37
798 802 7.821359 GTGCATATCTCTTGATAGAGGCAAATA 59.179 37.037 0.00 0.00 46.57 1.40
799 803 6.654161 GTGCATATCTCTTGATAGAGGCAAAT 59.346 38.462 0.00 0.00 46.57 2.32
800 804 5.994054 GTGCATATCTCTTGATAGAGGCAAA 59.006 40.000 0.00 0.00 46.57 3.68
815 819 4.763793 GCATTTGATACAGGGTGCATATCT 59.236 41.667 5.98 0.00 33.09 1.98
817 821 4.472496 TGCATTTGATACAGGGTGCATAT 58.528 39.130 0.00 0.00 37.63 1.78
821 825 5.458041 AATATGCATTTGATACAGGGTGC 57.542 39.130 3.54 0.00 0.00 5.01
822 826 5.335113 CCGAATATGCATTTGATACAGGGTG 60.335 44.000 3.54 0.00 0.00 4.61
823 827 4.761739 CCGAATATGCATTTGATACAGGGT 59.238 41.667 3.54 0.00 0.00 4.34
824 828 4.379813 GCCGAATATGCATTTGATACAGGG 60.380 45.833 3.54 0.00 0.00 4.45
825 829 4.669965 CGCCGAATATGCATTTGATACAGG 60.670 45.833 3.54 0.00 0.00 4.00
826 830 4.397382 CGCCGAATATGCATTTGATACAG 58.603 43.478 3.54 0.00 0.00 2.74
827 831 3.364864 GCGCCGAATATGCATTTGATACA 60.365 43.478 3.54 0.00 0.00 2.29
828 832 3.120199 AGCGCCGAATATGCATTTGATAC 60.120 43.478 3.54 0.00 0.00 2.24
829 833 3.073678 AGCGCCGAATATGCATTTGATA 58.926 40.909 3.54 0.00 0.00 2.15
830 834 1.881973 AGCGCCGAATATGCATTTGAT 59.118 42.857 3.54 0.00 0.00 2.57
831 835 1.308047 AGCGCCGAATATGCATTTGA 58.692 45.000 3.54 0.00 0.00 2.69
832 836 2.124011 AAGCGCCGAATATGCATTTG 57.876 45.000 3.54 0.00 0.00 2.32
833 837 3.304659 CCTTAAGCGCCGAATATGCATTT 60.305 43.478 3.54 0.00 0.00 2.32
834 838 2.226437 CCTTAAGCGCCGAATATGCATT 59.774 45.455 3.54 0.00 0.00 3.56
835 839 1.806542 CCTTAAGCGCCGAATATGCAT 59.193 47.619 2.29 3.79 0.00 3.96
836 840 1.225855 CCTTAAGCGCCGAATATGCA 58.774 50.000 2.29 0.00 0.00 3.96
837 841 0.110192 GCCTTAAGCGCCGAATATGC 60.110 55.000 2.29 0.00 0.00 3.14
848 852 0.317020 CTATTTGGCGCGCCTTAAGC 60.317 55.000 45.79 22.94 36.94 3.09
849 853 0.307760 CCTATTTGGCGCGCCTTAAG 59.692 55.000 45.79 34.13 36.94 1.85
850 854 0.107606 TCCTATTTGGCGCGCCTTAA 60.108 50.000 45.79 37.35 36.94 1.85
851 855 0.107831 ATCCTATTTGGCGCGCCTTA 59.892 50.000 45.79 34.15 36.94 2.69
852 856 0.751643 AATCCTATTTGGCGCGCCTT 60.752 50.000 45.79 32.55 36.94 4.35
853 857 0.751643 AAATCCTATTTGGCGCGCCT 60.752 50.000 45.79 31.19 36.94 5.52
854 858 0.594796 CAAATCCTATTTGGCGCGCC 60.595 55.000 42.35 42.35 35.26 6.53
855 859 0.594796 CCAAATCCTATTTGGCGCGC 60.595 55.000 25.94 25.94 41.95 6.86
856 860 0.030638 CCCAAATCCTATTTGGCGCG 59.969 55.000 21.00 0.00 45.70 6.86
857 861 1.111277 ACCCAAATCCTATTTGGCGC 58.889 50.000 21.00 0.00 45.70 6.53
858 862 5.529581 AATTACCCAAATCCTATTTGGCG 57.470 39.130 21.00 16.95 45.70 5.69
859 863 6.542005 CCAAAATTACCCAAATCCTATTTGGC 59.458 38.462 21.00 0.00 45.70 4.52
860 864 7.629157 ACCAAAATTACCCAAATCCTATTTGG 58.371 34.615 19.92 19.92 46.41 3.28
861 865 9.513906 AAACCAAAATTACCCAAATCCTATTTG 57.486 29.630 5.56 5.56 0.00 2.32
862 866 9.733556 GAAACCAAAATTACCCAAATCCTATTT 57.266 29.630 0.00 0.00 0.00 1.40
863 867 8.325787 GGAAACCAAAATTACCCAAATCCTATT 58.674 33.333 0.00 0.00 0.00 1.73
864 868 7.459444 TGGAAACCAAAATTACCCAAATCCTAT 59.541 33.333 0.00 0.00 0.00 2.57
865 869 6.787957 TGGAAACCAAAATTACCCAAATCCTA 59.212 34.615 0.00 0.00 0.00 2.94
866 870 5.608860 TGGAAACCAAAATTACCCAAATCCT 59.391 36.000 0.00 0.00 0.00 3.24
867 871 5.870706 TGGAAACCAAAATTACCCAAATCC 58.129 37.500 0.00 0.00 0.00 3.01
868 872 9.508642 TTTATGGAAACCAAAATTACCCAAATC 57.491 29.630 0.00 0.00 36.95 2.17
869 873 9.868160 TTTTATGGAAACCAAAATTACCCAAAT 57.132 25.926 0.00 0.00 36.95 2.32
870 874 9.868160 ATTTTATGGAAACCAAAATTACCCAAA 57.132 25.926 0.00 0.00 36.95 3.28
871 875 9.508642 GATTTTATGGAAACCAAAATTACCCAA 57.491 29.630 0.00 0.00 36.95 4.12
872 876 8.103935 GGATTTTATGGAAACCAAAATTACCCA 58.896 33.333 0.00 0.00 36.95 4.51
873 877 8.103935 TGGATTTTATGGAAACCAAAATTACCC 58.896 33.333 0.00 0.00 36.95 3.69
874 878 9.161629 CTGGATTTTATGGAAACCAAAATTACC 57.838 33.333 0.00 0.00 36.95 2.85
875 879 9.161629 CCTGGATTTTATGGAAACCAAAATTAC 57.838 33.333 0.00 0.00 36.95 1.89
876 880 7.826744 GCCTGGATTTTATGGAAACCAAAATTA 59.173 33.333 0.00 0.00 36.95 1.40
880 884 4.594920 TGCCTGGATTTTATGGAAACCAAA 59.405 37.500 0.00 0.00 36.95 3.28
957 965 4.078639 ACAAGACTTTCTGACCTGGAAG 57.921 45.455 0.00 0.00 0.00 3.46
958 966 4.503714 AACAAGACTTTCTGACCTGGAA 57.496 40.909 0.00 0.00 0.00 3.53
959 967 4.503714 AAACAAGACTTTCTGACCTGGA 57.496 40.909 0.00 0.00 0.00 3.86
960 968 4.202050 CCAAAACAAGACTTTCTGACCTGG 60.202 45.833 0.00 0.00 0.00 4.45
961 969 4.202050 CCCAAAACAAGACTTTCTGACCTG 60.202 45.833 0.00 0.00 0.00 4.00
962 970 3.954258 CCCAAAACAAGACTTTCTGACCT 59.046 43.478 0.00 0.00 0.00 3.85
963 971 3.951680 TCCCAAAACAAGACTTTCTGACC 59.048 43.478 0.00 0.00 0.00 4.02
964 972 4.881850 TCTCCCAAAACAAGACTTTCTGAC 59.118 41.667 0.00 0.00 0.00 3.51
965 973 5.104527 TCTCTCCCAAAACAAGACTTTCTGA 60.105 40.000 0.00 0.00 0.00 3.27
1002 1010 3.501349 TCTCTGCTCTCCTACACAACTT 58.499 45.455 0.00 0.00 0.00 2.66
1193 1201 0.461516 GGTACGGGAGCAACCTTAGC 60.462 60.000 0.29 0.00 36.54 3.09
1210 1218 2.492484 AGAGAGAAAACACTATCGCGGT 59.508 45.455 6.13 0.00 33.95 5.68
1213 1221 5.287513 GTGAAGAGAGAGAAAACACTATCGC 59.712 44.000 0.00 0.00 33.95 4.58
1222 1230 8.562892 CAAAATTAGCAGTGAAGAGAGAGAAAA 58.437 33.333 0.00 0.00 0.00 2.29
1253 1261 0.034477 GGACGATTCCCCAACATGGT 60.034 55.000 0.00 0.00 35.17 3.55
1256 1264 1.475034 CGATGGACGATTCCCCAACAT 60.475 52.381 0.00 0.00 45.77 2.71
1290 1298 2.915463 CGATCGAAACAACGAGTAAGCT 59.085 45.455 10.26 0.00 45.22 3.74
1312 1322 4.240096 TGGAGATAACGAACCGAAGAAAC 58.760 43.478 0.00 0.00 0.00 2.78
1444 1454 5.163683 CGCTCAATCATCTCAAAATCCAAGT 60.164 40.000 0.00 0.00 0.00 3.16
1552 1566 3.094572 CCAGCCCATAATTCCATCATCC 58.905 50.000 0.00 0.00 0.00 3.51
1700 1714 5.679355 CGAACGCAGAAGAATTTGTTAAACA 59.321 36.000 0.00 0.00 0.00 2.83
1719 1733 3.363970 CCACAAGAAGATTTGGACGAACG 60.364 47.826 0.00 0.00 32.32 3.95
1748 1762 0.317269 CACAAAGACAGCAGGCGTTG 60.317 55.000 9.03 9.03 0.00 4.10
1804 1819 4.457834 ACAGTCGGAGGTCATAAAGAAG 57.542 45.455 0.00 0.00 0.00 2.85
1890 1927 4.202398 GCCAGGAACAGGATGATCTATGAA 60.202 45.833 0.00 0.00 37.04 2.57
1989 2026 0.109179 CCCATGTCACCAACATTGCG 60.109 55.000 0.00 0.00 46.73 4.85
2045 2082 0.250081 GCCTTCTCATCTTAGCCCCG 60.250 60.000 0.00 0.00 0.00 5.73
2110 2147 5.133221 ACTCCACAACACTCTTATTGCTTT 58.867 37.500 0.00 0.00 0.00 3.51
2195 2232 8.763356 GTGAGAGAATCAGCTGTATAATTCTTG 58.237 37.037 22.37 0.00 39.07 3.02
2238 2275 3.399330 CATAGTACCCATTTACTGGCGG 58.601 50.000 0.00 0.00 44.46 6.13
2239 2276 2.806244 GCATAGTACCCATTTACTGGCG 59.194 50.000 0.00 0.00 44.46 5.69
2259 2296 1.113788 TAATTTGCAGGGCCAGATGC 58.886 50.000 17.34 17.34 42.86 3.91
2320 2357 0.464870 AACAATTGCAGGCACAAGCA 59.535 45.000 5.05 0.00 44.61 3.91
2369 2406 5.607477 AGTTCGTCTGGTTTCTCATTAACA 58.393 37.500 0.00 0.00 0.00 2.41
2376 2413 4.618965 ACAGTTAGTTCGTCTGGTTTCTC 58.381 43.478 0.00 0.00 34.02 2.87
2405 2442 5.241506 TGGAAATCTGTAAGCTTGTTCTTGG 59.758 40.000 9.86 0.00 0.00 3.61
2432 2469 4.319177 CCCTTGAGAAATTCTCGAAGTGT 58.681 43.478 17.09 0.00 46.25 3.55
2434 2471 3.870299 GCCCCTTGAGAAATTCTCGAAGT 60.870 47.826 17.09 0.00 46.25 3.01
2448 2485 1.300963 GCATCACTGAGCCCCTTGA 59.699 57.895 0.00 0.00 0.00 3.02
2491 2528 4.019174 CAAAGCAGATTGGTGGTAAGGAT 58.981 43.478 0.00 0.00 0.00 3.24
2507 2544 2.136298 TGGGTGAAGTTGACAAAGCA 57.864 45.000 0.00 0.00 0.00 3.91
2511 2548 2.766313 CTCGATGGGTGAAGTTGACAA 58.234 47.619 0.00 0.00 0.00 3.18
2576 2613 6.433716 TGATGTTTGAATCAAATGGCTGACTA 59.566 34.615 11.87 0.00 35.74 2.59
2577 2614 5.244402 TGATGTTTGAATCAAATGGCTGACT 59.756 36.000 11.87 0.00 35.74 3.41
2579 2616 5.725325 TGATGTTTGAATCAAATGGCTGA 57.275 34.783 11.87 0.00 35.74 4.26
2631 2668 1.081906 GTGGTTGCAGCATCGTGTG 60.082 57.895 2.05 0.00 0.00 3.82
2632 2669 0.890542 ATGTGGTTGCAGCATCGTGT 60.891 50.000 2.05 0.00 0.00 4.49
2659 2696 1.675720 AACCTGTTGCAACTGTGGGC 61.676 55.000 28.61 2.48 0.00 5.36
2845 2882 5.290158 GCAGATAATGTGCAATGAAAACTGG 59.710 40.000 0.00 0.00 40.86 4.00
2864 2901 1.065636 CCACATGGACTGTCAGCAGAT 60.066 52.381 10.38 0.00 45.25 2.90
2971 3015 5.106712 CGCAGCTTTTCTGGATAACTTACAA 60.107 40.000 0.00 0.00 43.06 2.41
3110 3157 1.942657 CTGTCGGGGTGCAATGAATAG 59.057 52.381 0.00 0.00 0.00 1.73
3116 3163 2.063015 TTGGTCTGTCGGGGTGCAAT 62.063 55.000 0.00 0.00 0.00 3.56
3419 3466 5.069914 TGCTATAAGATCTCCAGGCGTTTTA 59.930 40.000 0.00 0.00 0.00 1.52
3440 3487 2.144482 GCATGTTGCAAGAAACTGCT 57.856 45.000 12.08 0.00 44.26 4.24
3611 3661 0.035725 TGCTCCAGGACTCAATGCAG 60.036 55.000 0.00 0.00 0.00 4.41
3716 3766 8.950210 CCATAATTAAATCGGATGATTAGCAGT 58.050 33.333 0.00 0.00 44.02 4.40
3827 3880 6.708054 GTGCCAGTAAGCAATATTCTACAGAT 59.292 38.462 0.00 0.00 46.19 2.90
3829 3882 5.817296 TGTGCCAGTAAGCAATATTCTACAG 59.183 40.000 0.00 0.00 46.19 2.74
3873 3926 7.119846 TGCAAAGAGCCTAAGAAAAGACTAATC 59.880 37.037 0.00 0.00 44.83 1.75
3917 3970 5.924475 AGTGCGTGGATATTTAACTATGC 57.076 39.130 0.00 0.00 0.00 3.14
4167 4220 0.251916 TCGATCATCGGCAAGGGTTT 59.748 50.000 7.33 0.00 40.88 3.27
4341 4436 5.626142 TCACAAGCCTTGACCAAGTTTATA 58.374 37.500 12.25 0.00 36.72 0.98
4390 4485 2.703536 TCCATCCCATAACATAGCACGT 59.296 45.455 0.00 0.00 0.00 4.49
4391 4486 3.329386 CTCCATCCCATAACATAGCACG 58.671 50.000 0.00 0.00 0.00 5.34
4392 4487 3.560025 CCCTCCATCCCATAACATAGCAC 60.560 52.174 0.00 0.00 0.00 4.40
4393 4488 2.644299 CCCTCCATCCCATAACATAGCA 59.356 50.000 0.00 0.00 0.00 3.49
4394 4489 2.912956 TCCCTCCATCCCATAACATAGC 59.087 50.000 0.00 0.00 0.00 2.97
4395 4490 4.171234 AGTCCCTCCATCCCATAACATAG 58.829 47.826 0.00 0.00 0.00 2.23
4396 4491 4.228237 AGTCCCTCCATCCCATAACATA 57.772 45.455 0.00 0.00 0.00 2.29
4397 4492 3.080660 AGTCCCTCCATCCCATAACAT 57.919 47.619 0.00 0.00 0.00 2.71
4398 4493 2.587060 AGTCCCTCCATCCCATAACA 57.413 50.000 0.00 0.00 0.00 2.41
4399 4494 4.223923 CAGATAGTCCCTCCATCCCATAAC 59.776 50.000 0.00 0.00 0.00 1.89
4400 4495 4.109600 TCAGATAGTCCCTCCATCCCATAA 59.890 45.833 0.00 0.00 0.00 1.90
4401 4496 3.667614 TCAGATAGTCCCTCCATCCCATA 59.332 47.826 0.00 0.00 0.00 2.74
4402 4497 2.456340 TCAGATAGTCCCTCCATCCCAT 59.544 50.000 0.00 0.00 0.00 4.00
4403 4498 1.866269 TCAGATAGTCCCTCCATCCCA 59.134 52.381 0.00 0.00 0.00 4.37
4404 4499 2.704190 TCAGATAGTCCCTCCATCCC 57.296 55.000 0.00 0.00 0.00 3.85
4405 4500 3.831911 CTCTTCAGATAGTCCCTCCATCC 59.168 52.174 0.00 0.00 0.00 3.51
4406 4501 4.735369 TCTCTTCAGATAGTCCCTCCATC 58.265 47.826 0.00 0.00 0.00 3.51
4532 4628 7.831691 TTTCTGAATTGACAGATACCCAAAA 57.168 32.000 0.00 0.00 44.67 2.44
4784 4880 2.563620 TCGACAAAGGTGGTATGTAGCA 59.436 45.455 0.00 0.00 0.00 3.49
4809 4905 1.746615 AGCAGCGTGTGGCCTAATG 60.747 57.895 3.32 0.00 45.17 1.90
4920 5016 4.873010 TCAGAGCTCTTCCTGGTATAAGT 58.127 43.478 15.27 0.00 0.00 2.24
4924 5020 4.036518 ACATTCAGAGCTCTTCCTGGTAT 58.963 43.478 15.27 0.00 0.00 2.73
5023 5294 4.535781 TCCGTAAAGGTGGTATGTAGCTA 58.464 43.478 0.00 0.00 41.99 3.32
5024 5295 3.368248 TCCGTAAAGGTGGTATGTAGCT 58.632 45.455 0.00 0.00 41.99 3.32
5025 5296 3.492137 CCTCCGTAAAGGTGGTATGTAGC 60.492 52.174 0.00 0.00 46.13 3.58
5026 5297 4.317671 CCTCCGTAAAGGTGGTATGTAG 57.682 50.000 0.00 0.00 46.13 2.74
5034 5305 5.603170 TTATTACTCCCTCCGTAAAGGTG 57.397 43.478 0.00 0.00 41.99 4.00
5035 5306 6.819947 AATTATTACTCCCTCCGTAAAGGT 57.180 37.500 0.00 0.00 41.99 3.50
5036 5307 7.052248 ACAAATTATTACTCCCTCCGTAAAGG 58.948 38.462 0.00 0.00 42.97 3.11
5037 5308 7.767198 TGACAAATTATTACTCCCTCCGTAAAG 59.233 37.037 0.00 0.00 31.36 1.85
5038 5309 7.622713 TGACAAATTATTACTCCCTCCGTAAA 58.377 34.615 0.00 0.00 31.36 2.01
5039 5310 7.185318 TGACAAATTATTACTCCCTCCGTAA 57.815 36.000 0.00 0.00 0.00 3.18
5040 5311 6.684613 GCTGACAAATTATTACTCCCTCCGTA 60.685 42.308 0.00 0.00 0.00 4.02
5041 5312 5.671493 CTGACAAATTATTACTCCCTCCGT 58.329 41.667 0.00 0.00 0.00 4.69
5042 5313 4.511826 GCTGACAAATTATTACTCCCTCCG 59.488 45.833 0.00 0.00 0.00 4.63
5043 5314 5.529060 CAGCTGACAAATTATTACTCCCTCC 59.471 44.000 8.42 0.00 0.00 4.30
5044 5315 6.116126 ACAGCTGACAAATTATTACTCCCTC 58.884 40.000 23.35 0.00 0.00 4.30
5045 5316 6.067217 ACAGCTGACAAATTATTACTCCCT 57.933 37.500 23.35 0.00 0.00 4.20
5046 5317 7.520614 GCATACAGCTGACAAATTATTACTCCC 60.521 40.741 23.35 0.00 41.15 4.30
5047 5318 7.355778 GCATACAGCTGACAAATTATTACTCC 58.644 38.462 23.35 0.00 41.15 3.85
5104 5375 6.513066 GCAATTTTGTTTTGGCAGATTTAGCA 60.513 34.615 0.00 0.00 0.00 3.49
5121 5392 5.738118 ACAGACAACCAAATGCAATTTTG 57.262 34.783 5.90 5.90 46.10 2.44
5187 5458 4.382345 AAATTCAGCTAGCATTGAAGCC 57.618 40.909 18.83 0.00 39.64 4.35
5190 5984 6.625740 GCCTGTTAAATTCAGCTAGCATTGAA 60.626 38.462 18.83 18.63 37.68 2.69
5193 5987 4.952335 AGCCTGTTAAATTCAGCTAGCATT 59.048 37.500 18.83 5.15 0.00 3.56
5194 5988 4.530875 AGCCTGTTAAATTCAGCTAGCAT 58.469 39.130 18.83 0.00 0.00 3.79
5197 5991 7.617041 AAACTAGCCTGTTAAATTCAGCTAG 57.383 36.000 13.70 13.70 40.70 3.42
5208 6002 6.103997 GTGCAGTACATAAACTAGCCTGTTA 58.896 40.000 0.00 0.00 0.00 2.41
5214 6008 4.504858 ACCTGTGCAGTACATAAACTAGC 58.495 43.478 0.00 0.00 38.92 3.42
5217 6011 5.373222 TCAAACCTGTGCAGTACATAAACT 58.627 37.500 0.00 0.00 38.92 2.66
5218 6012 5.682943 TCAAACCTGTGCAGTACATAAAC 57.317 39.130 0.00 0.00 38.92 2.01
5219 6013 6.892658 ATTCAAACCTGTGCAGTACATAAA 57.107 33.333 0.00 0.00 38.92 1.40
5220 6014 8.046708 AGATATTCAAACCTGTGCAGTACATAA 58.953 33.333 0.00 0.00 38.92 1.90
5221 6015 7.564793 AGATATTCAAACCTGTGCAGTACATA 58.435 34.615 0.00 0.00 38.92 2.29
5222 6016 6.418101 AGATATTCAAACCTGTGCAGTACAT 58.582 36.000 0.00 0.00 38.92 2.29
5223 6017 5.804639 AGATATTCAAACCTGTGCAGTACA 58.195 37.500 0.00 0.00 37.78 2.90
5224 6018 6.816640 TGTAGATATTCAAACCTGTGCAGTAC 59.183 38.462 0.00 0.00 0.00 2.73
5226 6020 5.804639 TGTAGATATTCAAACCTGTGCAGT 58.195 37.500 0.00 0.00 0.00 4.40
5227 6021 6.595326 TCTTGTAGATATTCAAACCTGTGCAG 59.405 38.462 0.00 0.00 0.00 4.41
5228 6022 6.472016 TCTTGTAGATATTCAAACCTGTGCA 58.528 36.000 0.00 0.00 0.00 4.57
5229 6023 6.818644 TCTCTTGTAGATATTCAAACCTGTGC 59.181 38.462 0.00 0.00 0.00 4.57
5230 6024 8.777865 TTCTCTTGTAGATATTCAAACCTGTG 57.222 34.615 0.00 0.00 33.05 3.66
5231 6025 9.220767 GTTTCTCTTGTAGATATTCAAACCTGT 57.779 33.333 0.00 0.00 33.05 4.00
5232 6026 9.442047 AGTTTCTCTTGTAGATATTCAAACCTG 57.558 33.333 0.00 0.00 33.05 4.00
5246 6040 8.879759 CAAGTCAGTGTTTTAGTTTCTCTTGTA 58.120 33.333 0.00 0.00 0.00 2.41
5247 6041 7.390718 ACAAGTCAGTGTTTTAGTTTCTCTTGT 59.609 33.333 0.00 0.00 36.74 3.16
5248 6042 7.752695 ACAAGTCAGTGTTTTAGTTTCTCTTG 58.247 34.615 0.00 0.00 35.20 3.02
5250 6044 7.923414 AACAAGTCAGTGTTTTAGTTTCTCT 57.077 32.000 0.00 0.00 38.60 3.10
5261 6055 9.482627 TGTAAATTTTTGAAACAAGTCAGTGTT 57.517 25.926 0.00 0.00 43.58 3.32
5262 6056 8.921670 GTGTAAATTTTTGAAACAAGTCAGTGT 58.078 29.630 0.00 0.00 0.00 3.55
5263 6057 9.139174 AGTGTAAATTTTTGAAACAAGTCAGTG 57.861 29.630 0.00 0.00 0.00 3.66
5264 6058 9.139174 CAGTGTAAATTTTTGAAACAAGTCAGT 57.861 29.630 0.00 0.00 0.00 3.41
5265 6059 9.352784 TCAGTGTAAATTTTTGAAACAAGTCAG 57.647 29.630 0.00 0.00 0.00 3.51
5266 6060 9.134734 GTCAGTGTAAATTTTTGAAACAAGTCA 57.865 29.630 0.00 0.00 0.00 3.41
5267 6061 9.134734 TGTCAGTGTAAATTTTTGAAACAAGTC 57.865 29.630 0.00 0.00 0.00 3.01
5268 6062 9.651913 ATGTCAGTGTAAATTTTTGAAACAAGT 57.348 25.926 0.00 0.00 0.00 3.16
5269 6063 9.904647 CATGTCAGTGTAAATTTTTGAAACAAG 57.095 29.630 0.00 0.00 0.00 3.16
5270 6064 8.386606 GCATGTCAGTGTAAATTTTTGAAACAA 58.613 29.630 0.00 0.00 0.00 2.83
5271 6065 7.763528 AGCATGTCAGTGTAAATTTTTGAAACA 59.236 29.630 0.00 0.00 0.00 2.83
5272 6066 8.057742 CAGCATGTCAGTGTAAATTTTTGAAAC 58.942 33.333 0.00 0.00 0.00 2.78
5273 6067 7.224362 CCAGCATGTCAGTGTAAATTTTTGAAA 59.776 33.333 0.00 0.00 0.00 2.69
5274 6068 6.700960 CCAGCATGTCAGTGTAAATTTTTGAA 59.299 34.615 0.00 0.00 0.00 2.69
5275 6069 6.215121 CCAGCATGTCAGTGTAAATTTTTGA 58.785 36.000 0.00 0.00 0.00 2.69
5276 6070 5.406175 CCCAGCATGTCAGTGTAAATTTTTG 59.594 40.000 0.00 0.00 0.00 2.44
5277 6071 5.540911 CCCAGCATGTCAGTGTAAATTTTT 58.459 37.500 0.00 0.00 0.00 1.94
5278 6072 4.561326 GCCCAGCATGTCAGTGTAAATTTT 60.561 41.667 0.00 0.00 0.00 1.82
5279 6073 3.056607 GCCCAGCATGTCAGTGTAAATTT 60.057 43.478 0.00 0.00 0.00 1.82
5280 6074 2.493278 GCCCAGCATGTCAGTGTAAATT 59.507 45.455 0.00 0.00 0.00 1.82
5281 6075 2.094675 GCCCAGCATGTCAGTGTAAAT 58.905 47.619 0.00 0.00 0.00 1.40
5282 6076 1.202867 TGCCCAGCATGTCAGTGTAAA 60.203 47.619 0.00 0.00 31.71 2.01
5283 6077 0.399833 TGCCCAGCATGTCAGTGTAA 59.600 50.000 0.00 0.00 31.71 2.41
5284 6078 0.399833 TTGCCCAGCATGTCAGTGTA 59.600 50.000 0.00 0.00 38.76 2.90
5285 6079 1.151221 TTGCCCAGCATGTCAGTGT 59.849 52.632 0.00 0.00 38.76 3.55
5286 6080 1.174078 TGTTGCCCAGCATGTCAGTG 61.174 55.000 0.00 0.00 38.76 3.66
5287 6081 1.151221 TGTTGCCCAGCATGTCAGT 59.849 52.632 0.00 0.00 38.76 3.41
5288 6082 1.174078 TGTGTTGCCCAGCATGTCAG 61.174 55.000 0.00 0.00 38.76 3.51
5300 6094 1.130955 CCGTTGCAGAAATGTGTTGC 58.869 50.000 0.00 0.00 38.30 4.17
5317 6111 4.561735 TGTTCCTTGTTTCTTAAAGCCG 57.438 40.909 0.00 0.00 0.00 5.52
5401 6195 9.270640 GTATCTCTTTCTTAGTCATGCATTCAT 57.729 33.333 0.00 0.00 0.00 2.57
5402 6196 8.260114 TGTATCTCTTTCTTAGTCATGCATTCA 58.740 33.333 0.00 0.00 0.00 2.57
5403 6197 8.654230 TGTATCTCTTTCTTAGTCATGCATTC 57.346 34.615 0.00 0.00 0.00 2.67
5404 6198 9.107177 CTTGTATCTCTTTCTTAGTCATGCATT 57.893 33.333 0.00 0.00 0.00 3.56
5405 6199 8.481314 TCTTGTATCTCTTTCTTAGTCATGCAT 58.519 33.333 0.00 0.00 0.00 3.96
5406 6200 7.761704 GTCTTGTATCTCTTTCTTAGTCATGCA 59.238 37.037 0.00 0.00 0.00 3.96
5407 6201 7.978975 AGTCTTGTATCTCTTTCTTAGTCATGC 59.021 37.037 0.00 0.00 0.00 4.06
5408 6202 9.868277 AAGTCTTGTATCTCTTTCTTAGTCATG 57.132 33.333 0.00 0.00 0.00 3.07
5410 6204 9.698309 CAAAGTCTTGTATCTCTTTCTTAGTCA 57.302 33.333 0.00 0.00 0.00 3.41
5411 6205 9.699703 ACAAAGTCTTGTATCTCTTTCTTAGTC 57.300 33.333 0.00 0.00 44.14 2.59
5415 6209 9.396022 TGAAACAAAGTCTTGTATCTCTTTCTT 57.604 29.630 0.00 0.00 45.25 2.52
5416 6210 8.831550 GTGAAACAAAGTCTTGTATCTCTTTCT 58.168 33.333 0.00 0.00 45.25 2.52
5417 6211 8.995419 GTGAAACAAAGTCTTGTATCTCTTTC 57.005 34.615 0.00 0.00 45.25 2.62
5436 6230 6.811170 TGTGGAAGTTGAATTCTTTGTGAAAC 59.189 34.615 7.05 0.94 38.29 2.78
5437 6231 6.811170 GTGTGGAAGTTGAATTCTTTGTGAAA 59.189 34.615 7.05 0.00 38.29 2.69
5438 6232 6.071672 TGTGTGGAAGTTGAATTCTTTGTGAA 60.072 34.615 7.05 0.00 39.24 3.18
5439 6233 5.417266 TGTGTGGAAGTTGAATTCTTTGTGA 59.583 36.000 7.05 0.00 0.00 3.58
5440 6234 5.649557 TGTGTGGAAGTTGAATTCTTTGTG 58.350 37.500 7.05 0.00 0.00 3.33
5441 6235 5.913137 TGTGTGGAAGTTGAATTCTTTGT 57.087 34.783 7.05 0.00 0.00 2.83
5442 6236 6.813152 ACTTTGTGTGGAAGTTGAATTCTTTG 59.187 34.615 7.05 0.00 33.76 2.77
5443 6237 6.813152 CACTTTGTGTGGAAGTTGAATTCTTT 59.187 34.615 7.05 0.00 42.68 2.52
5444 6238 6.332630 CACTTTGTGTGGAAGTTGAATTCTT 58.667 36.000 7.05 0.00 42.68 2.52
5508 6302 9.612066 TGTTGAAACATGATGCTCTACATTATA 57.388 29.630 0.00 0.00 33.44 0.98
5684 6644 3.466881 CCAAGAGGTGGTGGTCGA 58.533 61.111 0.00 0.00 43.20 4.20
5706 6666 1.549203 CTTGTTGTATGCAGGGGCTT 58.451 50.000 0.00 0.00 41.91 4.35
5755 6867 9.155975 CATTTGTCTAGTTACAGCTTGATAACT 57.844 33.333 15.56 15.56 42.75 2.24
5756 6868 7.905493 GCATTTGTCTAGTTACAGCTTGATAAC 59.095 37.037 4.72 4.72 0.00 1.89
5757 6869 7.824289 AGCATTTGTCTAGTTACAGCTTGATAA 59.176 33.333 0.00 0.00 27.43 1.75
5758 6870 7.278646 CAGCATTTGTCTAGTTACAGCTTGATA 59.721 37.037 0.00 0.00 29.00 2.15
5759 6871 6.093219 CAGCATTTGTCTAGTTACAGCTTGAT 59.907 38.462 0.00 0.00 29.00 2.57
5760 6872 5.409520 CAGCATTTGTCTAGTTACAGCTTGA 59.590 40.000 0.00 0.00 29.00 3.02
5761 6873 5.409520 TCAGCATTTGTCTAGTTACAGCTTG 59.590 40.000 0.00 0.00 29.00 4.01
5762 6874 5.551233 TCAGCATTTGTCTAGTTACAGCTT 58.449 37.500 0.00 0.00 29.00 3.74
5763 6875 5.152623 TCAGCATTTGTCTAGTTACAGCT 57.847 39.130 0.00 0.00 30.91 4.24
5764 6876 5.179368 TGTTCAGCATTTGTCTAGTTACAGC 59.821 40.000 0.00 0.00 0.00 4.40
5765 6877 6.425114 AGTGTTCAGCATTTGTCTAGTTACAG 59.575 38.462 0.00 0.00 0.00 2.74
5766 6878 6.288294 AGTGTTCAGCATTTGTCTAGTTACA 58.712 36.000 0.00 0.00 0.00 2.41
5767 6879 6.787085 AGTGTTCAGCATTTGTCTAGTTAC 57.213 37.500 0.00 0.00 0.00 2.50
5768 6880 7.801716 AAAGTGTTCAGCATTTGTCTAGTTA 57.198 32.000 0.00 0.00 0.00 2.24
5769 6881 6.699575 AAAGTGTTCAGCATTTGTCTAGTT 57.300 33.333 0.00 0.00 0.00 2.24
5770 6882 7.986085 ATAAAGTGTTCAGCATTTGTCTAGT 57.014 32.000 0.00 0.00 0.00 2.57
5771 6883 9.121517 CAAATAAAGTGTTCAGCATTTGTCTAG 57.878 33.333 0.00 0.00 31.76 2.43
5772 6884 8.081633 CCAAATAAAGTGTTCAGCATTTGTCTA 58.918 33.333 0.00 0.00 33.56 2.59
5773 6885 6.925165 CCAAATAAAGTGTTCAGCATTTGTCT 59.075 34.615 0.00 0.00 33.56 3.41
5774 6886 6.701400 ACCAAATAAAGTGTTCAGCATTTGTC 59.299 34.615 0.00 0.00 33.56 3.18
5775 6887 6.581712 ACCAAATAAAGTGTTCAGCATTTGT 58.418 32.000 0.00 0.00 33.56 2.83
5776 6888 7.481275 AACCAAATAAAGTGTTCAGCATTTG 57.519 32.000 0.00 0.00 34.62 2.32
5777 6889 7.986889 AGAAACCAAATAAAGTGTTCAGCATTT 59.013 29.630 0.00 0.00 0.00 2.32
5778 6890 7.500141 AGAAACCAAATAAAGTGTTCAGCATT 58.500 30.769 0.00 0.00 0.00 3.56
5779 6891 7.054491 AGAAACCAAATAAAGTGTTCAGCAT 57.946 32.000 0.00 0.00 0.00 3.79
5780 6892 6.096141 TGAGAAACCAAATAAAGTGTTCAGCA 59.904 34.615 0.00 0.00 0.00 4.41
5781 6893 6.503524 TGAGAAACCAAATAAAGTGTTCAGC 58.496 36.000 0.00 0.00 0.00 4.26
5782 6894 8.137437 ACATGAGAAACCAAATAAAGTGTTCAG 58.863 33.333 0.00 0.00 0.00 3.02
5783 6895 7.920151 CACATGAGAAACCAAATAAAGTGTTCA 59.080 33.333 0.00 0.00 0.00 3.18
5784 6896 7.096065 GCACATGAGAAACCAAATAAAGTGTTC 60.096 37.037 0.00 0.00 0.00 3.18
5785 6897 6.701400 GCACATGAGAAACCAAATAAAGTGTT 59.299 34.615 0.00 0.00 0.00 3.32
5786 6898 6.183360 TGCACATGAGAAACCAAATAAAGTGT 60.183 34.615 0.00 0.00 0.00 3.55
5787 6899 6.215121 TGCACATGAGAAACCAAATAAAGTG 58.785 36.000 0.00 0.00 0.00 3.16
5788 6900 6.403866 TGCACATGAGAAACCAAATAAAGT 57.596 33.333 0.00 0.00 0.00 2.66
5789 6901 7.894376 AATGCACATGAGAAACCAAATAAAG 57.106 32.000 0.00 0.00 0.00 1.85
5790 6902 8.674263 AAAATGCACATGAGAAACCAAATAAA 57.326 26.923 0.00 0.00 0.00 1.40
5791 6903 7.387397 GGAAAATGCACATGAGAAACCAAATAA 59.613 33.333 0.00 0.00 0.00 1.40
5792 6904 6.873076 GGAAAATGCACATGAGAAACCAAATA 59.127 34.615 0.00 0.00 0.00 1.40
5793 6905 5.702209 GGAAAATGCACATGAGAAACCAAAT 59.298 36.000 0.00 0.00 0.00 2.32
5794 6906 5.055812 GGAAAATGCACATGAGAAACCAAA 58.944 37.500 0.00 0.00 0.00 3.28
5795 6907 4.100653 TGGAAAATGCACATGAGAAACCAA 59.899 37.500 0.00 0.00 0.00 3.67
5796 6908 3.640498 TGGAAAATGCACATGAGAAACCA 59.360 39.130 0.00 0.00 0.00 3.67
5797 6909 3.989817 GTGGAAAATGCACATGAGAAACC 59.010 43.478 0.00 0.00 38.66 3.27
5798 6910 4.619973 TGTGGAAAATGCACATGAGAAAC 58.380 39.130 0.00 0.00 43.78 2.78
5799 6911 4.933505 TGTGGAAAATGCACATGAGAAA 57.066 36.364 0.00 0.00 43.78 2.52
5807 6919 4.503741 AGTGTACATGTGGAAAATGCAC 57.496 40.909 9.11 0.00 33.78 4.57
5808 6920 6.350027 CCATAAGTGTACATGTGGAAAATGCA 60.350 38.462 9.11 0.00 33.78 3.96
5809 6921 6.035843 CCATAAGTGTACATGTGGAAAATGC 58.964 40.000 9.11 0.00 33.78 3.56
5810 6922 7.156876 ACCATAAGTGTACATGTGGAAAATG 57.843 36.000 16.55 5.41 37.65 2.32
5811 6923 8.107095 AGTACCATAAGTGTACATGTGGAAAAT 58.893 33.333 16.55 3.84 40.79 1.82
5812 6924 7.455058 AGTACCATAAGTGTACATGTGGAAAA 58.545 34.615 16.55 2.36 40.79 2.29
5813 6925 7.011499 AGTACCATAAGTGTACATGTGGAAA 57.989 36.000 16.55 4.35 40.79 3.13
5814 6926 6.351541 GGAGTACCATAAGTGTACATGTGGAA 60.352 42.308 16.55 0.00 40.79 3.53
5815 6927 5.128171 GGAGTACCATAAGTGTACATGTGGA 59.872 44.000 16.55 1.37 40.79 4.02
5816 6928 5.105106 TGGAGTACCATAAGTGTACATGTGG 60.105 44.000 9.11 9.91 41.77 4.17
5817 6929 5.972935 TGGAGTACCATAAGTGTACATGTG 58.027 41.667 9.11 0.00 41.77 3.21
5831 6943 9.051679 CATTATTATGAAACGAATGGAGTACCA 57.948 33.333 0.00 0.00 41.30 3.25
5832 6944 8.015658 GCATTATTATGAAACGAATGGAGTACC 58.984 37.037 0.00 0.00 33.37 3.34
5833 6945 8.774586 AGCATTATTATGAAACGAATGGAGTAC 58.225 33.333 0.00 0.00 33.37 2.73
5834 6946 8.902540 AGCATTATTATGAAACGAATGGAGTA 57.097 30.769 0.00 0.00 33.37 2.59
5835 6947 7.807977 AGCATTATTATGAAACGAATGGAGT 57.192 32.000 0.00 0.00 33.37 3.85
5836 6948 9.817365 CTTAGCATTATTATGAAACGAATGGAG 57.183 33.333 0.00 0.00 33.37 3.86
5837 6949 9.554395 TCTTAGCATTATTATGAAACGAATGGA 57.446 29.630 0.00 0.00 33.37 3.41
5841 6953 9.663904 GCATTCTTAGCATTATTATGAAACGAA 57.336 29.630 0.00 0.00 33.37 3.85
5842 6954 9.056005 AGCATTCTTAGCATTATTATGAAACGA 57.944 29.630 0.00 0.00 33.37 3.85
5843 6955 9.110617 CAGCATTCTTAGCATTATTATGAAACG 57.889 33.333 0.00 0.00 33.37 3.60
5844 6956 8.909671 GCAGCATTCTTAGCATTATTATGAAAC 58.090 33.333 0.00 0.00 33.37 2.78
5845 6957 8.853126 AGCAGCATTCTTAGCATTATTATGAAA 58.147 29.630 0.00 0.00 33.37 2.69
5846 6958 8.294577 CAGCAGCATTCTTAGCATTATTATGAA 58.705 33.333 0.00 0.00 33.37 2.57
5847 6959 7.662669 TCAGCAGCATTCTTAGCATTATTATGA 59.337 33.333 0.00 0.00 33.37 2.15
5848 6960 7.813645 TCAGCAGCATTCTTAGCATTATTATG 58.186 34.615 0.00 0.00 34.76 1.90
5849 6961 7.991084 TCAGCAGCATTCTTAGCATTATTAT 57.009 32.000 0.00 0.00 0.00 1.28
5850 6962 7.991084 ATCAGCAGCATTCTTAGCATTATTA 57.009 32.000 0.00 0.00 0.00 0.98
5851 6963 6.896021 ATCAGCAGCATTCTTAGCATTATT 57.104 33.333 0.00 0.00 0.00 1.40
5852 6964 8.577048 AATATCAGCAGCATTCTTAGCATTAT 57.423 30.769 0.00 0.00 0.00 1.28
5853 6965 7.991084 AATATCAGCAGCATTCTTAGCATTA 57.009 32.000 0.00 0.00 0.00 1.90
5854 6966 6.896021 AATATCAGCAGCATTCTTAGCATT 57.104 33.333 0.00 0.00 0.00 3.56
5855 6967 6.896021 AAATATCAGCAGCATTCTTAGCAT 57.104 33.333 0.00 0.00 0.00 3.79
5856 6968 6.704289 AAAATATCAGCAGCATTCTTAGCA 57.296 33.333 0.00 0.00 0.00 3.49
5882 6994 9.841295 ACTTTGTTAAGTTTGACCAAGTCTATA 57.159 29.630 1.89 0.00 41.85 1.31
5883 6995 8.747538 ACTTTGTTAAGTTTGACCAAGTCTAT 57.252 30.769 1.89 0.00 41.85 1.98
5901 7013 8.942338 GGATTTTCCTAAGTCAAAACTTTGTT 57.058 30.769 2.30 0.00 45.11 2.83
5958 7070 2.822561 TGAAACCAGCAGTGTCAAAACA 59.177 40.909 0.00 0.00 39.92 2.83
5984 7096 6.771188 AGTTTGAACTGACTACATTCTTCG 57.229 37.500 0.00 0.00 37.98 3.79
5991 7103 9.990360 TGTATTGATAAGTTTGAACTGACTACA 57.010 29.630 0.00 0.00 39.66 2.74
6018 7130 6.327934 TGGCTAACTCTTATTCAGTTCGTAC 58.672 40.000 0.00 0.00 35.63 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.