Multiple sequence alignment - TraesCS4A01G150100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G150100 chr4A 100.000 6302 0 0 1 6302 294295210 294301511 0.000000e+00 11638.0
1 TraesCS4A01G150100 chr4A 79.537 562 87 15 3941 4479 634741297 634741853 5.960000e-100 375.0
2 TraesCS4A01G150100 chr4D 96.150 1922 47 7 566 2463 166543497 166545415 0.000000e+00 3114.0
3 TraesCS4A01G150100 chr4D 90.760 1829 88 26 4489 6302 166546411 166548173 0.000000e+00 2366.0
4 TraesCS4A01G150100 chr4D 87.520 617 47 16 2484 3094 166545821 166546413 0.000000e+00 686.0
5 TraesCS4A01G150100 chr4D 93.871 310 19 0 2 311 462815603 462815294 9.570000e-128 468.0
6 TraesCS4A01G150100 chr4D 93.016 315 21 1 2 316 306374493 306374180 5.760000e-125 459.0
7 TraesCS4A01G150100 chr4D 96.047 253 3 1 320 572 166542565 166542810 7.610000e-109 405.0
8 TraesCS4A01G150100 chr4D 84.694 196 29 1 3097 3291 118377426 118377621 1.790000e-45 195.0
9 TraesCS4A01G150100 chr4B 96.184 1913 51 7 572 2463 222563427 222561516 0.000000e+00 3109.0
10 TraesCS4A01G150100 chr4B 91.822 1553 83 24 4518 6054 222544852 222543328 0.000000e+00 2124.0
11 TraesCS4A01G150100 chr4B 91.693 1553 85 24 4518 6054 222560161 222558637 0.000000e+00 2113.0
12 TraesCS4A01G150100 chr4B 88.636 572 47 12 2486 3050 222560716 222560156 0.000000e+00 680.0
13 TraesCS4A01G150100 chr4B 88.462 572 48 12 2486 3050 222545407 222544847 0.000000e+00 675.0
14 TraesCS4A01G150100 chr4B 92.188 192 8 1 311 502 222570657 222570473 1.350000e-66 265.0
15 TraesCS4A01G150100 chrUn 84.498 1445 156 34 3094 4479 110694528 110693093 0.000000e+00 1365.0
16 TraesCS4A01G150100 chrUn 84.362 243 35 3 4238 4479 36509847 36509607 1.060000e-57 235.0
17 TraesCS4A01G150100 chrUn 100.000 32 0 0 4042 4073 55731116 55731085 6.820000e-05 60.2
18 TraesCS4A01G150100 chr5B 84.876 1329 142 22 3091 4368 335951607 335952927 0.000000e+00 1286.0
19 TraesCS4A01G150100 chr7B 83.781 1005 124 22 3106 4076 143251770 143250771 0.000000e+00 917.0
20 TraesCS4A01G150100 chr7B 86.257 342 42 5 4142 4479 143250771 143250431 3.590000e-97 366.0
21 TraesCS4A01G150100 chr7B 79.371 286 47 8 3351 3633 729197797 729197521 2.320000e-44 191.0
22 TraesCS4A01G150100 chr7B 74.858 529 75 28 3097 3592 579413744 579413241 3.000000e-43 187.0
23 TraesCS4A01G150100 chr7D 83.808 772 82 17 3094 3845 84324418 84325166 0.000000e+00 693.0
24 TraesCS4A01G150100 chr7D 93.226 310 21 0 2 311 529979481 529979790 2.070000e-124 457.0
25 TraesCS4A01G150100 chr7D 92.000 325 21 5 2 324 524535413 524535734 9.630000e-123 451.0
26 TraesCS4A01G150100 chr2A 84.070 747 78 18 3097 3810 26881836 26882574 0.000000e+00 682.0
27 TraesCS4A01G150100 chr2A 86.167 347 35 10 4142 4479 26918067 26918409 4.640000e-96 363.0
28 TraesCS4A01G150100 chr2A 83.333 312 30 10 3091 3381 12202509 12202819 1.040000e-67 268.0
29 TraesCS4A01G150100 chr7A 81.630 871 95 29 3097 3933 624639357 624638518 0.000000e+00 662.0
30 TraesCS4A01G150100 chr7A 93.269 312 21 0 2 313 609507004 609507315 1.600000e-125 460.0
31 TraesCS4A01G150100 chr7A 88.581 289 24 6 4134 4415 624638385 624638099 6.050000e-90 342.0
32 TraesCS4A01G150100 chr7A 86.817 311 32 7 4174 4479 80547943 80548249 7.830000e-89 339.0
33 TraesCS4A01G150100 chr7A 85.161 310 36 9 4175 4479 125914907 125915211 6.140000e-80 309.0
34 TraesCS4A01G150100 chr7A 82.566 304 29 9 3097 3381 125913817 125914115 4.880000e-61 246.0
35 TraesCS4A01G150100 chr7A 81.311 305 27 9 3097 3381 80546876 80547170 2.960000e-53 220.0
36 TraesCS4A01G150100 chr6A 83.333 756 86 23 3097 3820 583133814 583133067 0.000000e+00 662.0
37 TraesCS4A01G150100 chr6A 84.874 357 42 8 4134 4482 583132299 583131947 3.620000e-92 350.0
38 TraesCS4A01G150100 chr6A 80.176 227 41 4 4255 4479 521990881 521990657 3.910000e-37 167.0
39 TraesCS4A01G150100 chr1B 81.179 882 105 32 3097 3938 42018914 42019774 0.000000e+00 652.0
40 TraesCS4A01G150100 chr1B 86.154 260 31 5 4223 4479 42020614 42020871 6.220000e-70 276.0
41 TraesCS4A01G150100 chr1B 85.204 196 28 1 3097 3291 571364765 571364960 3.850000e-47 200.0
42 TraesCS4A01G150100 chr1B 77.093 227 42 8 4258 4479 42019136 42018915 8.580000e-24 122.0
43 TraesCS4A01G150100 chr6B 80.599 835 107 29 3097 3898 654502109 654502921 1.510000e-165 593.0
44 TraesCS4A01G150100 chr6B 86.218 312 32 10 4177 4479 141659836 141659527 1.690000e-85 327.0
45 TraesCS4A01G150100 chr6B 82.838 303 31 6 3097 3381 141660921 141660622 1.050000e-62 252.0
46 TraesCS4A01G150100 chr6D 93.548 310 20 0 2 311 156568675 156568366 4.450000e-126 462.0
47 TraesCS4A01G150100 chr1D 93.548 310 19 1 2 311 208753550 208753858 1.600000e-125 460.0
48 TraesCS4A01G150100 chr1D 93.248 311 19 2 2 311 319517406 319517715 2.070000e-124 457.0
49 TraesCS4A01G150100 chr1D 85.714 196 27 1 3097 3291 442423794 442423599 8.280000e-49 206.0
50 TraesCS4A01G150100 chr1D 80.531 113 18 4 2940 3050 492139584 492139474 4.050000e-12 84.2
51 TraesCS4A01G150100 chr3D 93.248 311 21 0 2 312 5561412 5561722 5.760000e-125 459.0
52 TraesCS4A01G150100 chr3D 93.333 45 3 0 5002 5046 433415516 433415560 4.080000e-07 67.6
53 TraesCS4A01G150100 chr2B 79.375 320 51 8 3341 3657 709846649 709846956 1.780000e-50 211.0
54 TraesCS4A01G150100 chr2B 79.149 235 28 12 3342 3573 159251939 159252155 6.590000e-30 143.0
55 TraesCS4A01G150100 chr5D 85.204 196 28 1 3097 3291 486452582 486452777 3.850000e-47 200.0
56 TraesCS4A01G150100 chr5D 72.608 763 141 40 3343 4073 34042717 34041991 8.340000e-44 189.0
57 TraesCS4A01G150100 chr5D 97.619 42 1 0 5005 5046 72902355 72902314 8.760000e-09 73.1
58 TraesCS4A01G150100 chr3A 84.772 197 27 3 3097 3291 501935159 501935354 1.790000e-45 195.0
59 TraesCS4A01G150100 chr3A 93.333 45 3 0 5002 5046 571791546 571791590 4.080000e-07 67.6
60 TraesCS4A01G150100 chr5A 77.259 321 50 12 3343 3660 525939673 525939373 3.910000e-37 167.0
61 TraesCS4A01G150100 chr5A 79.894 189 34 3 3884 4070 685971066 685971252 1.100000e-27 135.0
62 TraesCS4A01G150100 chr5A 95.238 42 2 0 5005 5046 67471168 67471127 4.080000e-07 67.6
63 TraesCS4A01G150100 chr3B 91.111 45 4 0 5002 5046 566162474 566162518 1.900000e-05 62.1
64 TraesCS4A01G150100 chr2D 100.000 28 0 0 2985 3012 50126079 50126106 1.100000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G150100 chr4A 294295210 294301511 6301 False 11638.000000 11638 100.00000 1 6302 1 chr4A.!!$F1 6301
1 TraesCS4A01G150100 chr4A 634741297 634741853 556 False 375.000000 375 79.53700 3941 4479 1 chr4A.!!$F2 538
2 TraesCS4A01G150100 chr4D 166542565 166548173 5608 False 1642.750000 3114 92.61925 320 6302 4 chr4D.!!$F2 5982
3 TraesCS4A01G150100 chr4B 222558637 222563427 4790 True 1967.333333 3109 92.17100 572 6054 3 chr4B.!!$R3 5482
4 TraesCS4A01G150100 chr4B 222543328 222545407 2079 True 1399.500000 2124 90.14200 2486 6054 2 chr4B.!!$R2 3568
5 TraesCS4A01G150100 chrUn 110693093 110694528 1435 True 1365.000000 1365 84.49800 3094 4479 1 chrUn.!!$R3 1385
6 TraesCS4A01G150100 chr5B 335951607 335952927 1320 False 1286.000000 1286 84.87600 3091 4368 1 chr5B.!!$F1 1277
7 TraesCS4A01G150100 chr7B 143250431 143251770 1339 True 641.500000 917 85.01900 3106 4479 2 chr7B.!!$R3 1373
8 TraesCS4A01G150100 chr7D 84324418 84325166 748 False 693.000000 693 83.80800 3094 3845 1 chr7D.!!$F1 751
9 TraesCS4A01G150100 chr2A 26881836 26882574 738 False 682.000000 682 84.07000 3097 3810 1 chr2A.!!$F2 713
10 TraesCS4A01G150100 chr7A 624638099 624639357 1258 True 502.000000 662 85.10550 3097 4415 2 chr7A.!!$R1 1318
11 TraesCS4A01G150100 chr7A 80546876 80548249 1373 False 279.500000 339 84.06400 3097 4479 2 chr7A.!!$F2 1382
12 TraesCS4A01G150100 chr7A 125913817 125915211 1394 False 277.500000 309 83.86350 3097 4479 2 chr7A.!!$F3 1382
13 TraesCS4A01G150100 chr6A 583131947 583133814 1867 True 506.000000 662 84.10350 3097 4482 2 chr6A.!!$R2 1385
14 TraesCS4A01G150100 chr1B 42018914 42020871 1957 False 464.000000 652 83.66650 3097 4479 2 chr1B.!!$F2 1382
15 TraesCS4A01G150100 chr6B 654502109 654502921 812 False 593.000000 593 80.59900 3097 3898 1 chr6B.!!$F1 801
16 TraesCS4A01G150100 chr6B 141659527 141660921 1394 True 289.500000 327 84.52800 3097 4479 2 chr6B.!!$R1 1382

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
91 92 0.107459 GCTGGTTGGGATCTCAGGTC 60.107 60.0 0.00 0.0 0.00 3.85 F
205 206 0.252197 CCTAGGCGGTGGCTTTAGTT 59.748 55.0 0.00 0.0 39.70 2.24 F
267 268 0.734309 TAAAGTGGCTGCATGCATCG 59.266 50.0 22.97 12.0 45.15 3.84 F
890 1599 0.829333 AAACTGCATGCCAAACCACA 59.171 45.0 16.68 0.0 0.00 4.17 F
2601 4098 0.172803 ATGAGGTGGTCGCGTAGAAC 59.827 55.0 5.77 0.0 37.00 3.01 F
2610 4107 0.035152 TCGCGTAGAACCCCTAGTGA 60.035 55.0 5.77 0.0 0.00 3.41 F
3709 5572 0.114954 ACCGTACAAGGGGGAGTGTA 59.885 55.0 0.00 0.0 35.02 2.90 F
4909 8136 0.319555 CTTCTTCCCGCTCGTCAACA 60.320 55.0 0.00 0.0 0.00 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1408 2117 0.787787 GCGTTGTGCGACAGATACAA 59.212 50.000 0.00 0.00 44.77 2.41 R
1948 2666 2.825836 AGGGGCGTCGTAGTACGG 60.826 66.667 21.85 8.58 42.81 4.02 R
2284 3002 0.969894 AGGTGGTTCTCGAACTCCTG 59.030 55.000 18.38 0.00 40.71 3.86 R
2610 4107 0.468771 AGCAGCAGCAAGGGTTTCTT 60.469 50.000 3.17 0.00 45.49 2.52 R
3977 6564 0.468214 CTACAGGAGATCTCGCCCCA 60.468 60.000 16.46 0.16 36.39 4.96 R
4126 7115 1.664321 CTCCCGGTCGTCCCAACTAG 61.664 65.000 0.00 0.00 0.00 2.57 R
5049 8276 0.831307 GGTACTGCGAGGGGAATCTT 59.169 55.000 0.00 0.00 0.00 2.40 R
6123 9374 0.242286 AGACGGCTGATAGCGCTATG 59.758 55.000 33.54 20.80 43.62 2.23 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 3.059982 TCCTGGTTGAGGAGTGCG 58.940 61.111 0.00 0.00 46.96 5.34
38 39 1.837051 TCCTGGTTGAGGAGTGCGT 60.837 57.895 0.00 0.00 46.96 5.24
39 40 1.374758 CCTGGTTGAGGAGTGCGTC 60.375 63.158 0.00 0.00 46.33 5.19
40 41 1.734477 CTGGTTGAGGAGTGCGTCG 60.734 63.158 0.00 0.00 0.00 5.12
41 42 2.432628 GGTTGAGGAGTGCGTCGG 60.433 66.667 0.00 0.00 0.00 4.79
42 43 2.649034 GTTGAGGAGTGCGTCGGA 59.351 61.111 0.00 0.00 0.00 4.55
43 44 1.733399 GTTGAGGAGTGCGTCGGAC 60.733 63.158 9.08 9.08 0.00 4.79
44 45 1.901948 TTGAGGAGTGCGTCGGACT 60.902 57.895 20.04 20.04 0.00 3.85
45 46 2.142357 TTGAGGAGTGCGTCGGACTG 62.142 60.000 24.84 1.33 0.00 3.51
46 47 3.343788 GAGGAGTGCGTCGGACTGG 62.344 68.421 24.84 0.00 0.00 4.00
47 48 3.681835 GGAGTGCGTCGGACTGGT 61.682 66.667 24.84 0.00 0.00 4.00
48 49 2.430921 GAGTGCGTCGGACTGGTG 60.431 66.667 24.84 0.00 0.00 4.17
49 50 3.916392 GAGTGCGTCGGACTGGTGG 62.916 68.421 24.84 0.00 0.00 4.61
50 51 3.986006 GTGCGTCGGACTGGTGGA 61.986 66.667 9.90 0.00 0.00 4.02
51 52 2.994995 TGCGTCGGACTGGTGGAT 60.995 61.111 6.57 0.00 0.00 3.41
52 53 2.509336 GCGTCGGACTGGTGGATG 60.509 66.667 6.57 0.00 0.00 3.51
53 54 2.509336 CGTCGGACTGGTGGATGC 60.509 66.667 6.57 0.00 0.00 3.91
54 55 2.125106 GTCGGACTGGTGGATGCC 60.125 66.667 0.00 0.00 0.00 4.40
55 56 3.399181 TCGGACTGGTGGATGCCC 61.399 66.667 0.00 0.00 0.00 5.36
56 57 3.402681 CGGACTGGTGGATGCCCT 61.403 66.667 0.00 0.00 0.00 5.19
57 58 2.063979 CGGACTGGTGGATGCCCTA 61.064 63.158 0.00 0.00 0.00 3.53
58 59 1.410850 CGGACTGGTGGATGCCCTAT 61.411 60.000 0.00 0.00 0.00 2.57
59 60 1.729586 GGACTGGTGGATGCCCTATA 58.270 55.000 0.00 0.00 0.00 1.31
60 61 1.348036 GGACTGGTGGATGCCCTATAC 59.652 57.143 0.00 0.00 0.00 1.47
61 62 1.348036 GACTGGTGGATGCCCTATACC 59.652 57.143 0.00 0.00 0.00 2.73
62 63 0.693049 CTGGTGGATGCCCTATACCC 59.307 60.000 0.00 0.00 0.00 3.69
63 64 1.125093 TGGTGGATGCCCTATACCCG 61.125 60.000 0.00 0.00 0.00 5.28
64 65 1.677552 GTGGATGCCCTATACCCGG 59.322 63.158 0.00 0.00 0.00 5.73
65 66 2.221299 TGGATGCCCTATACCCGGC 61.221 63.158 0.00 0.00 45.92 6.13
69 70 3.999948 GCCCTATACCCGGCGGAC 62.000 72.222 30.79 1.87 34.94 4.79
70 71 3.677648 CCCTATACCCGGCGGACG 61.678 72.222 30.79 14.82 43.80 4.79
71 72 2.908940 CCTATACCCGGCGGACGT 60.909 66.667 30.79 20.42 42.24 4.34
72 73 2.333938 CTATACCCGGCGGACGTG 59.666 66.667 30.79 13.54 42.24 4.49
73 74 3.836176 CTATACCCGGCGGACGTGC 62.836 68.421 30.79 0.00 42.24 5.34
82 83 4.308458 CGGACGTGCTGGTTGGGA 62.308 66.667 5.27 0.00 0.00 4.37
83 84 2.351276 GGACGTGCTGGTTGGGAT 59.649 61.111 0.00 0.00 0.00 3.85
84 85 1.745489 GGACGTGCTGGTTGGGATC 60.745 63.158 0.00 0.00 0.00 3.36
85 86 1.296715 GACGTGCTGGTTGGGATCT 59.703 57.895 0.00 0.00 0.00 2.75
86 87 0.741221 GACGTGCTGGTTGGGATCTC 60.741 60.000 0.00 0.00 0.00 2.75
87 88 1.296392 CGTGCTGGTTGGGATCTCA 59.704 57.895 0.00 0.00 0.00 3.27
88 89 0.742281 CGTGCTGGTTGGGATCTCAG 60.742 60.000 0.00 0.00 0.00 3.35
89 90 0.393537 GTGCTGGTTGGGATCTCAGG 60.394 60.000 0.00 0.00 0.00 3.86
90 91 0.842030 TGCTGGTTGGGATCTCAGGT 60.842 55.000 0.00 0.00 0.00 4.00
91 92 0.107459 GCTGGTTGGGATCTCAGGTC 60.107 60.000 0.00 0.00 0.00 3.85
92 93 1.577736 CTGGTTGGGATCTCAGGTCT 58.422 55.000 0.00 0.00 0.00 3.85
93 94 1.912043 CTGGTTGGGATCTCAGGTCTT 59.088 52.381 0.00 0.00 0.00 3.01
94 95 3.107601 CTGGTTGGGATCTCAGGTCTTA 58.892 50.000 0.00 0.00 0.00 2.10
95 96 3.107601 TGGTTGGGATCTCAGGTCTTAG 58.892 50.000 0.00 0.00 0.00 2.18
96 97 3.245984 TGGTTGGGATCTCAGGTCTTAGA 60.246 47.826 0.00 0.00 0.00 2.10
97 98 3.970640 GGTTGGGATCTCAGGTCTTAGAT 59.029 47.826 0.00 0.00 35.15 1.98
98 99 4.202305 GGTTGGGATCTCAGGTCTTAGATG 60.202 50.000 0.00 0.00 32.60 2.90
99 100 4.271807 TGGGATCTCAGGTCTTAGATGT 57.728 45.455 0.00 0.00 32.60 3.06
100 101 4.624913 TGGGATCTCAGGTCTTAGATGTT 58.375 43.478 0.00 0.00 32.60 2.71
101 102 5.777449 TGGGATCTCAGGTCTTAGATGTTA 58.223 41.667 0.00 0.00 32.60 2.41
102 103 5.835819 TGGGATCTCAGGTCTTAGATGTTAG 59.164 44.000 0.00 0.00 32.60 2.34
103 104 5.245075 GGGATCTCAGGTCTTAGATGTTAGG 59.755 48.000 0.00 0.00 32.60 2.69
104 105 5.836358 GGATCTCAGGTCTTAGATGTTAGGT 59.164 44.000 0.00 0.00 32.60 3.08
105 106 6.325286 GGATCTCAGGTCTTAGATGTTAGGTT 59.675 42.308 0.00 0.00 32.60 3.50
106 107 7.147637 GGATCTCAGGTCTTAGATGTTAGGTTT 60.148 40.741 0.00 0.00 32.60 3.27
107 108 6.936279 TCTCAGGTCTTAGATGTTAGGTTTG 58.064 40.000 0.00 0.00 0.00 2.93
108 109 6.049955 TCAGGTCTTAGATGTTAGGTTTGG 57.950 41.667 0.00 0.00 0.00 3.28
109 110 4.636206 CAGGTCTTAGATGTTAGGTTTGGC 59.364 45.833 0.00 0.00 0.00 4.52
110 111 4.536489 AGGTCTTAGATGTTAGGTTTGGCT 59.464 41.667 0.00 0.00 0.00 4.75
111 112 4.636206 GGTCTTAGATGTTAGGTTTGGCTG 59.364 45.833 0.00 0.00 0.00 4.85
112 113 4.095036 GTCTTAGATGTTAGGTTTGGCTGC 59.905 45.833 0.00 0.00 0.00 5.25
113 114 1.453155 AGATGTTAGGTTTGGCTGCG 58.547 50.000 0.00 0.00 0.00 5.18
114 115 1.003118 AGATGTTAGGTTTGGCTGCGA 59.997 47.619 0.00 0.00 0.00 5.10
115 116 1.398390 GATGTTAGGTTTGGCTGCGAG 59.602 52.381 0.00 0.00 0.00 5.03
116 117 0.605319 TGTTAGGTTTGGCTGCGAGG 60.605 55.000 0.00 0.00 0.00 4.63
117 118 0.605589 GTTAGGTTTGGCTGCGAGGT 60.606 55.000 0.00 0.00 0.00 3.85
118 119 0.321298 TTAGGTTTGGCTGCGAGGTC 60.321 55.000 0.00 0.00 0.00 3.85
119 120 1.192146 TAGGTTTGGCTGCGAGGTCT 61.192 55.000 0.00 0.00 0.00 3.85
120 121 2.328099 GGTTTGGCTGCGAGGTCTG 61.328 63.158 0.00 0.00 0.00 3.51
121 122 1.598130 GTTTGGCTGCGAGGTCTGT 60.598 57.895 0.00 0.00 0.00 3.41
122 123 1.148273 TTTGGCTGCGAGGTCTGTT 59.852 52.632 0.00 0.00 0.00 3.16
123 124 0.465460 TTTGGCTGCGAGGTCTGTTT 60.465 50.000 0.00 0.00 0.00 2.83
124 125 1.165907 TTGGCTGCGAGGTCTGTTTG 61.166 55.000 0.00 0.00 0.00 2.93
125 126 2.328099 GGCTGCGAGGTCTGTTTGG 61.328 63.158 0.00 0.00 0.00 3.28
126 127 1.598130 GCTGCGAGGTCTGTTTGGT 60.598 57.895 0.00 0.00 0.00 3.67
127 128 0.320421 GCTGCGAGGTCTGTTTGGTA 60.320 55.000 0.00 0.00 0.00 3.25
128 129 1.676014 GCTGCGAGGTCTGTTTGGTAT 60.676 52.381 0.00 0.00 0.00 2.73
129 130 2.699954 CTGCGAGGTCTGTTTGGTATT 58.300 47.619 0.00 0.00 0.00 1.89
130 131 3.857052 CTGCGAGGTCTGTTTGGTATTA 58.143 45.455 0.00 0.00 0.00 0.98
131 132 3.857052 TGCGAGGTCTGTTTGGTATTAG 58.143 45.455 0.00 0.00 0.00 1.73
132 133 3.195661 GCGAGGTCTGTTTGGTATTAGG 58.804 50.000 0.00 0.00 0.00 2.69
133 134 3.195661 CGAGGTCTGTTTGGTATTAGGC 58.804 50.000 0.00 0.00 0.00 3.93
134 135 3.118738 CGAGGTCTGTTTGGTATTAGGCT 60.119 47.826 0.00 0.00 0.00 4.58
135 136 4.443621 GAGGTCTGTTTGGTATTAGGCTC 58.556 47.826 0.00 0.00 0.00 4.70
136 137 3.844211 AGGTCTGTTTGGTATTAGGCTCA 59.156 43.478 0.00 0.00 0.00 4.26
137 138 4.080863 AGGTCTGTTTGGTATTAGGCTCAG 60.081 45.833 0.00 0.00 0.00 3.35
138 139 4.081087 GGTCTGTTTGGTATTAGGCTCAGA 60.081 45.833 0.00 0.00 0.00 3.27
139 140 4.870991 GTCTGTTTGGTATTAGGCTCAGAC 59.129 45.833 10.25 10.25 41.85 3.51
140 141 4.777896 TCTGTTTGGTATTAGGCTCAGACT 59.222 41.667 0.00 0.00 0.00 3.24
141 142 5.955959 TCTGTTTGGTATTAGGCTCAGACTA 59.044 40.000 0.00 0.00 0.00 2.59
142 143 6.611642 TCTGTTTGGTATTAGGCTCAGACTAT 59.388 38.462 0.00 0.00 0.00 2.12
143 144 6.817184 TGTTTGGTATTAGGCTCAGACTATC 58.183 40.000 0.00 0.00 0.00 2.08
144 145 6.382859 TGTTTGGTATTAGGCTCAGACTATCA 59.617 38.462 0.00 0.00 0.00 2.15
145 146 6.656632 TTGGTATTAGGCTCAGACTATCAG 57.343 41.667 0.00 0.00 0.00 2.90
146 147 4.524714 TGGTATTAGGCTCAGACTATCAGC 59.475 45.833 0.00 0.00 0.00 4.26
147 148 4.524714 GGTATTAGGCTCAGACTATCAGCA 59.475 45.833 0.00 0.00 34.62 4.41
148 149 5.186797 GGTATTAGGCTCAGACTATCAGCAT 59.813 44.000 0.00 0.00 34.62 3.79
149 150 4.862902 TTAGGCTCAGACTATCAGCATC 57.137 45.455 0.00 0.00 34.62 3.91
150 151 1.969923 AGGCTCAGACTATCAGCATCC 59.030 52.381 0.00 0.00 34.62 3.51
151 152 1.001860 GGCTCAGACTATCAGCATCCC 59.998 57.143 3.39 0.00 34.62 3.85
152 153 1.969923 GCTCAGACTATCAGCATCCCT 59.030 52.381 0.00 0.00 33.06 4.20
153 154 2.288948 GCTCAGACTATCAGCATCCCTG 60.289 54.545 0.00 0.00 43.17 4.45
164 165 3.888424 CATCCCTGCATCAACTGGA 57.112 52.632 0.00 0.00 0.00 3.86
165 166 2.359981 CATCCCTGCATCAACTGGAT 57.640 50.000 0.00 0.00 36.26 3.41
166 167 3.497103 CATCCCTGCATCAACTGGATA 57.503 47.619 0.00 0.00 34.12 2.59
167 168 3.409570 CATCCCTGCATCAACTGGATAG 58.590 50.000 0.00 0.00 34.12 2.08
168 169 1.770658 TCCCTGCATCAACTGGATAGG 59.229 52.381 0.00 0.00 33.95 2.57
169 170 1.770658 CCCTGCATCAACTGGATAGGA 59.229 52.381 0.00 0.00 34.78 2.94
170 171 2.224475 CCCTGCATCAACTGGATAGGAG 60.224 54.545 0.00 0.00 34.78 3.69
171 172 2.437281 CCTGCATCAACTGGATAGGAGT 59.563 50.000 0.00 0.00 34.78 3.85
172 173 3.643320 CCTGCATCAACTGGATAGGAGTA 59.357 47.826 0.00 0.00 34.78 2.59
173 174 4.262377 CCTGCATCAACTGGATAGGAGTAG 60.262 50.000 0.00 0.00 34.78 2.57
174 175 3.643320 TGCATCAACTGGATAGGAGTAGG 59.357 47.826 0.00 0.00 33.95 3.18
175 176 3.007398 GCATCAACTGGATAGGAGTAGGG 59.993 52.174 0.00 0.00 33.95 3.53
176 177 4.483950 CATCAACTGGATAGGAGTAGGGA 58.516 47.826 0.00 0.00 33.95 4.20
177 178 3.912248 TCAACTGGATAGGAGTAGGGAC 58.088 50.000 0.00 0.00 0.00 4.46
178 179 3.271225 TCAACTGGATAGGAGTAGGGACA 59.729 47.826 0.00 0.00 0.00 4.02
179 180 3.603965 ACTGGATAGGAGTAGGGACAG 57.396 52.381 0.00 0.00 0.00 3.51
180 181 3.132056 ACTGGATAGGAGTAGGGACAGA 58.868 50.000 0.00 0.00 0.00 3.41
181 182 3.730059 ACTGGATAGGAGTAGGGACAGAT 59.270 47.826 0.00 0.00 0.00 2.90
182 183 4.085733 CTGGATAGGAGTAGGGACAGATG 58.914 52.174 0.00 0.00 0.00 2.90
183 184 3.467483 TGGATAGGAGTAGGGACAGATGT 59.533 47.826 0.00 0.00 0.00 3.06
184 185 4.078571 TGGATAGGAGTAGGGACAGATGTT 60.079 45.833 0.00 0.00 0.00 2.71
185 186 4.282195 GGATAGGAGTAGGGACAGATGTTG 59.718 50.000 0.00 0.00 0.00 3.33
186 187 1.834263 AGGAGTAGGGACAGATGTTGC 59.166 52.381 0.00 0.00 0.00 4.17
187 188 1.134371 GGAGTAGGGACAGATGTTGCC 60.134 57.143 0.00 0.00 0.00 4.52
188 189 1.834263 GAGTAGGGACAGATGTTGCCT 59.166 52.381 0.00 0.00 0.00 4.75
189 190 3.031736 GAGTAGGGACAGATGTTGCCTA 58.968 50.000 0.00 0.00 0.00 3.93
190 191 3.034635 AGTAGGGACAGATGTTGCCTAG 58.965 50.000 0.00 0.00 0.00 3.02
191 192 1.207791 AGGGACAGATGTTGCCTAGG 58.792 55.000 3.67 3.67 0.00 3.02
192 193 0.464554 GGGACAGATGTTGCCTAGGC 60.465 60.000 27.71 27.71 42.35 3.93
193 194 0.811616 GGACAGATGTTGCCTAGGCG 60.812 60.000 28.28 14.59 45.51 5.52
194 195 0.811616 GACAGATGTTGCCTAGGCGG 60.812 60.000 28.28 13.37 45.51 6.13
195 196 1.221840 CAGATGTTGCCTAGGCGGT 59.778 57.895 28.28 13.98 45.51 5.68
196 197 1.091771 CAGATGTTGCCTAGGCGGTG 61.092 60.000 28.28 14.48 45.51 4.94
197 198 1.819632 GATGTTGCCTAGGCGGTGG 60.820 63.158 28.28 0.00 45.51 4.61
202 203 2.587889 GCCTAGGCGGTGGCTTTA 59.412 61.111 20.16 0.00 45.26 1.85
203 204 1.523938 GCCTAGGCGGTGGCTTTAG 60.524 63.158 20.16 0.00 45.26 1.85
204 205 1.905512 CCTAGGCGGTGGCTTTAGT 59.094 57.895 0.00 0.00 39.70 2.24
205 206 0.252197 CCTAGGCGGTGGCTTTAGTT 59.748 55.000 0.00 0.00 39.70 2.24
206 207 1.339727 CCTAGGCGGTGGCTTTAGTTT 60.340 52.381 0.00 0.00 39.70 2.66
207 208 2.433436 CTAGGCGGTGGCTTTAGTTTT 58.567 47.619 0.00 0.00 39.70 2.43
208 209 2.572209 AGGCGGTGGCTTTAGTTTTA 57.428 45.000 0.00 0.00 39.81 1.52
209 210 2.156917 AGGCGGTGGCTTTAGTTTTAC 58.843 47.619 0.00 0.00 39.81 2.01
210 211 2.156917 GGCGGTGGCTTTAGTTTTACT 58.843 47.619 0.00 0.00 39.81 2.24
211 212 3.008266 AGGCGGTGGCTTTAGTTTTACTA 59.992 43.478 0.00 0.00 39.81 1.82
212 213 3.943381 GGCGGTGGCTTTAGTTTTACTAT 59.057 43.478 0.00 0.00 39.81 2.12
213 214 4.397103 GGCGGTGGCTTTAGTTTTACTATT 59.603 41.667 0.00 0.00 39.81 1.73
214 215 5.329493 GCGGTGGCTTTAGTTTTACTATTG 58.671 41.667 0.00 0.00 35.83 1.90
215 216 5.106436 GCGGTGGCTTTAGTTTTACTATTGT 60.106 40.000 0.00 0.00 35.83 2.71
216 217 6.569035 GCGGTGGCTTTAGTTTTACTATTGTT 60.569 38.462 0.00 0.00 35.83 2.83
217 218 7.364970 CGGTGGCTTTAGTTTTACTATTGTTT 58.635 34.615 0.00 0.00 29.64 2.83
218 219 7.325097 CGGTGGCTTTAGTTTTACTATTGTTTG 59.675 37.037 0.00 0.00 29.64 2.93
219 220 8.354426 GGTGGCTTTAGTTTTACTATTGTTTGA 58.646 33.333 0.00 0.00 29.64 2.69
220 221 9.177304 GTGGCTTTAGTTTTACTATTGTTTGAC 57.823 33.333 0.00 0.00 29.64 3.18
221 222 9.127277 TGGCTTTAGTTTTACTATTGTTTGACT 57.873 29.630 0.00 0.00 29.64 3.41
222 223 9.961265 GGCTTTAGTTTTACTATTGTTTGACTT 57.039 29.630 0.00 0.00 29.64 3.01
232 233 9.841295 TTACTATTGTTTGACTTTGTAAGGTCT 57.159 29.630 8.11 0.00 34.01 3.85
233 234 8.747538 ACTATTGTTTGACTTTGTAAGGTCTT 57.252 30.769 8.11 0.00 34.01 3.01
234 235 8.621286 ACTATTGTTTGACTTTGTAAGGTCTTG 58.379 33.333 8.11 0.00 34.01 3.02
235 236 6.827586 TTGTTTGACTTTGTAAGGTCTTGT 57.172 33.333 8.11 0.00 34.01 3.16
236 237 6.189677 TGTTTGACTTTGTAAGGTCTTGTG 57.810 37.500 8.11 0.00 34.01 3.33
237 238 5.708230 TGTTTGACTTTGTAAGGTCTTGTGT 59.292 36.000 8.11 0.00 34.01 3.72
238 239 5.811399 TTGACTTTGTAAGGTCTTGTGTG 57.189 39.130 8.11 0.00 34.01 3.82
239 240 5.092554 TGACTTTGTAAGGTCTTGTGTGA 57.907 39.130 8.11 0.00 34.01 3.58
240 241 5.492895 TGACTTTGTAAGGTCTTGTGTGAA 58.507 37.500 8.11 0.00 34.01 3.18
241 242 6.119536 TGACTTTGTAAGGTCTTGTGTGAAT 58.880 36.000 8.11 0.00 34.01 2.57
242 243 7.276658 TGACTTTGTAAGGTCTTGTGTGAATA 58.723 34.615 8.11 0.00 34.01 1.75
243 244 7.771361 TGACTTTGTAAGGTCTTGTGTGAATAA 59.229 33.333 8.11 0.00 34.01 1.40
244 245 8.691661 ACTTTGTAAGGTCTTGTGTGAATAAT 57.308 30.769 0.00 0.00 0.00 1.28
245 246 9.131791 ACTTTGTAAGGTCTTGTGTGAATAATT 57.868 29.630 0.00 0.00 0.00 1.40
258 259 9.853555 TTGTGTGAATAATTAATAAAGTGGCTG 57.146 29.630 0.00 0.00 0.00 4.85
259 260 7.973388 TGTGTGAATAATTAATAAAGTGGCTGC 59.027 33.333 0.00 0.00 0.00 5.25
260 261 7.973388 GTGTGAATAATTAATAAAGTGGCTGCA 59.027 33.333 0.50 0.00 0.00 4.41
261 262 8.694540 TGTGAATAATTAATAAAGTGGCTGCAT 58.305 29.630 0.50 0.00 0.00 3.96
262 263 8.971321 GTGAATAATTAATAAAGTGGCTGCATG 58.029 33.333 0.50 0.00 0.00 4.06
263 264 7.652909 TGAATAATTAATAAAGTGGCTGCATGC 59.347 33.333 11.82 11.82 41.94 4.06
264 265 5.341872 AATTAATAAAGTGGCTGCATGCA 57.658 34.783 21.29 21.29 45.15 3.96
265 266 5.540400 ATTAATAAAGTGGCTGCATGCAT 57.460 34.783 22.97 6.91 45.15 3.96
266 267 3.447918 AATAAAGTGGCTGCATGCATC 57.552 42.857 22.97 17.75 45.15 3.91
267 268 0.734309 TAAAGTGGCTGCATGCATCG 59.266 50.000 22.97 12.00 45.15 3.84
268 269 1.246056 AAAGTGGCTGCATGCATCGT 61.246 50.000 22.97 7.77 45.15 3.73
269 270 1.651240 AAGTGGCTGCATGCATCGTC 61.651 55.000 22.97 13.00 45.15 4.20
270 271 3.197092 TGGCTGCATGCATCGTCG 61.197 61.111 22.97 10.36 45.15 5.12
271 272 2.891936 GGCTGCATGCATCGTCGA 60.892 61.111 22.97 0.00 45.15 4.20
272 273 2.624811 GCTGCATGCATCGTCGAG 59.375 61.111 22.97 8.76 42.31 4.04
273 274 1.879884 GCTGCATGCATCGTCGAGA 60.880 57.895 22.97 0.00 42.31 4.04
274 275 1.220169 GCTGCATGCATCGTCGAGAT 61.220 55.000 22.97 0.00 42.31 2.75
282 283 1.361993 ATCGTCGAGATGCAGAGGC 59.638 57.895 0.00 0.00 38.36 4.70
283 284 2.081425 ATCGTCGAGATGCAGAGGCC 62.081 60.000 0.00 0.00 38.36 5.19
284 285 2.279120 GTCGAGATGCAGAGGCCG 60.279 66.667 0.00 0.00 40.13 6.13
285 286 3.531207 TCGAGATGCAGAGGCCGG 61.531 66.667 0.00 0.00 40.13 6.13
286 287 4.598894 CGAGATGCAGAGGCCGGG 62.599 72.222 2.18 0.00 40.13 5.73
287 288 4.247380 GAGATGCAGAGGCCGGGG 62.247 72.222 2.18 0.00 40.13 5.73
303 304 3.029083 GGGGTCCTCCTCCATTTCT 57.971 57.895 0.00 0.00 35.33 2.52
304 305 2.191981 GGGGTCCTCCTCCATTTCTA 57.808 55.000 0.00 0.00 35.33 2.10
305 306 2.488836 GGGGTCCTCCTCCATTTCTAA 58.511 52.381 0.00 0.00 35.33 2.10
306 307 2.850568 GGGGTCCTCCTCCATTTCTAAA 59.149 50.000 0.00 0.00 35.33 1.85
307 308 3.268595 GGGGTCCTCCTCCATTTCTAAAA 59.731 47.826 0.00 0.00 35.33 1.52
308 309 4.264217 GGGGTCCTCCTCCATTTCTAAAAA 60.264 45.833 0.00 0.00 35.33 1.94
417 418 6.717289 AGACCTTTGTACATTTATGCAGGTA 58.283 36.000 0.00 0.00 33.40 3.08
426 427 6.506538 ACATTTATGCAGGTATCTTCTCCT 57.493 37.500 0.00 0.00 33.96 3.69
427 428 6.904626 ACATTTATGCAGGTATCTTCTCCTT 58.095 36.000 0.00 0.00 30.91 3.36
428 429 6.769822 ACATTTATGCAGGTATCTTCTCCTTG 59.230 38.462 0.00 0.00 30.91 3.61
429 430 5.957771 TTATGCAGGTATCTTCTCCTTGT 57.042 39.130 0.00 0.00 30.91 3.16
430 431 7.432148 TTTATGCAGGTATCTTCTCCTTGTA 57.568 36.000 0.00 0.00 30.91 2.41
431 432 5.957771 ATGCAGGTATCTTCTCCTTGTAA 57.042 39.130 0.00 0.00 30.91 2.41
432 433 5.344743 TGCAGGTATCTTCTCCTTGTAAG 57.655 43.478 0.00 0.00 30.91 2.34
512 513 2.363306 ATATGGGATCTTTGGCGCAA 57.637 45.000 10.83 0.00 0.00 4.85
513 514 1.679139 TATGGGATCTTTGGCGCAAG 58.321 50.000 10.83 5.27 43.44 4.01
675 1369 6.112927 TCTTTGCCTAATTTGCCATCTTTT 57.887 33.333 0.00 0.00 0.00 2.27
688 1382 7.790782 TTGCCATCTTTTCTATTTTTAGGGT 57.209 32.000 0.00 0.00 0.00 4.34
833 1533 4.201657 TCATATCCATTGCTGACCTGTTG 58.798 43.478 0.00 0.00 0.00 3.33
841 1545 3.995526 CTGACCTGTTGTCTCAGCA 57.004 52.632 0.00 0.00 44.75 4.41
890 1599 0.829333 AAACTGCATGCCAAACCACA 59.171 45.000 16.68 0.00 0.00 4.17
924 1633 4.099881 AGGCATTGACAAAAAGCAGAAGAA 59.900 37.500 11.23 0.00 0.00 2.52
982 1691 5.513267 GGCTGGAAGAAAACTAGAGGAAAGA 60.513 44.000 0.00 0.00 34.07 2.52
1241 1950 4.033776 GCCTGGGGTGCAGTGCTA 62.034 66.667 17.60 0.00 0.00 3.49
1711 2420 2.553727 GCGTTTGCCGGTAACCCAA 61.554 57.895 3.74 0.00 36.94 4.12
2469 3944 3.575256 TCCAATATGATTACTACGGCCGT 59.425 43.478 36.01 36.01 0.00 5.68
2481 3956 4.814294 GGCCGTCGGTGCAGGTAG 62.814 72.222 13.94 0.00 0.00 3.18
2482 3957 4.065281 GCCGTCGGTGCAGGTAGT 62.065 66.667 13.94 0.00 0.00 2.73
2507 4004 1.746787 ACACCATGCATAGTCGTCGTA 59.253 47.619 0.00 0.00 0.00 3.43
2529 4026 3.264450 AGGAGCTAACTTTGTGCCTATGT 59.736 43.478 0.00 0.00 0.00 2.29
2552 4049 2.946990 TGATGAGCAATCATCGCAACAT 59.053 40.909 12.26 0.00 46.93 2.71
2553 4050 3.379057 TGATGAGCAATCATCGCAACATT 59.621 39.130 12.26 0.00 46.93 2.71
2566 4063 2.792890 CGCAACATTGTCAAAACCGACA 60.793 45.455 0.00 0.00 44.05 4.35
2592 4089 2.091555 AGTAGAGGGAGATGAGGTGGTC 60.092 54.545 0.00 0.00 0.00 4.02
2601 4098 0.172803 ATGAGGTGGTCGCGTAGAAC 59.827 55.000 5.77 0.00 37.00 3.01
2610 4107 0.035152 TCGCGTAGAACCCCTAGTGA 60.035 55.000 5.77 0.00 0.00 3.41
2623 4120 2.040412 CCCTAGTGAAGAAACCCTTGCT 59.960 50.000 0.00 0.00 34.68 3.91
2648 4145 8.229253 TGCTGCTTGATCTGTTGATTATTTAT 57.771 30.769 0.00 0.00 32.19 1.40
2652 4149 8.773645 TGCTTGATCTGTTGATTATTTATACGG 58.226 33.333 0.00 0.00 32.19 4.02
2677 4174 9.736023 GGAAAGCTTAATTCCATTACACATAAG 57.264 33.333 10.27 0.00 44.70 1.73
2682 4181 9.516314 GCTTAATTCCATTACACATAAGAAACC 57.484 33.333 0.00 0.00 0.00 3.27
2697 4198 3.991367 AGAAACCGTTGACCTACTTGAG 58.009 45.455 0.00 0.00 0.00 3.02
2721 4223 9.689075 GAGTACTTCAAAAAGAAAAACAATTGC 57.311 29.630 5.05 0.00 35.40 3.56
2736 4238 6.715347 AACAATTGCTGAAGTTACTCCTTT 57.285 33.333 5.05 0.00 0.00 3.11
2757 4259 6.448369 TTTCTTCCGGGATTATATGGATGT 57.552 37.500 0.00 0.00 0.00 3.06
2835 4341 5.795972 TGTGTAAATTGACCTGATTACCGA 58.204 37.500 0.00 0.00 0.00 4.69
2846 4352 9.715121 TTGACCTGATTACCGATATATTTAACC 57.285 33.333 0.00 0.00 0.00 2.85
2911 4417 9.778741 TTGTAGATTGTTTCATCTTTAGTGACT 57.221 29.630 0.00 0.00 0.00 3.41
2920 4426 9.155975 GTTTCATCTTTAGTGACTACATGATGT 57.844 33.333 19.02 2.65 33.82 3.06
2935 4441 6.351371 CTACATGATGTATATGGACTCCCCAC 60.351 46.154 5.65 0.00 38.91 4.61
3072 4578 4.811063 AATCCCAGGATGCATCTCATGATG 60.811 45.833 25.28 13.89 42.09 3.07
3084 4590 6.723131 CATCTCATGATGCTCGTTTGATAT 57.277 37.500 0.00 0.00 42.83 1.63
3086 4592 6.535274 TCTCATGATGCTCGTTTGATATTG 57.465 37.500 0.00 0.00 0.00 1.90
3093 4599 4.260985 TGCTCGTTTGATATTGTGGATGT 58.739 39.130 0.00 0.00 0.00 3.06
3095 4601 4.496341 GCTCGTTTGATATTGTGGATGTGG 60.496 45.833 0.00 0.00 0.00 4.17
3167 4673 3.503748 CCACTTTTTAGAGAGGGCACAAG 59.496 47.826 0.00 0.00 0.00 3.16
3193 4702 5.714333 ACCACCAATTATGTGCTTAATGACA 59.286 36.000 2.51 0.00 32.30 3.58
3205 4714 2.799126 TAATGACAAACGGGGAGCAT 57.201 45.000 0.00 0.00 0.00 3.79
3263 4772 1.729267 AAGTTGGGCCCACCTGTCAT 61.729 55.000 28.70 4.23 41.11 3.06
3265 4774 2.468868 TTGGGCCCACCTGTCATGT 61.469 57.895 28.70 0.00 41.11 3.21
3278 4787 0.874390 GTCATGTTGACGTGGCATGT 59.126 50.000 13.11 13.11 37.67 3.21
3326 4852 5.757850 AAGTGACTCATTTGTTTGTCTCC 57.242 39.130 0.00 0.00 0.00 3.71
3327 4853 4.780815 AGTGACTCATTTGTTTGTCTCCA 58.219 39.130 0.00 0.00 0.00 3.86
3368 4898 2.898705 TGTGGGCATTTCAACAAACAC 58.101 42.857 0.00 0.00 0.00 3.32
3370 4900 1.751351 TGGGCATTTCAACAAACACGA 59.249 42.857 0.00 0.00 0.00 4.35
3506 5065 4.729868 CCCCTTTCTTTTTCTTCTCCTCA 58.270 43.478 0.00 0.00 0.00 3.86
3529 5371 1.767681 CCTCCCTGATTTCCCTCTCTG 59.232 57.143 0.00 0.00 0.00 3.35
3581 5439 1.139734 GGATGAACTCGAGCTCGCA 59.860 57.895 30.97 22.32 39.60 5.10
3643 5501 1.241315 CCCTGGATCCAACGCGTTTT 61.241 55.000 24.21 10.32 0.00 2.43
3647 5505 0.312729 GGATCCAACGCGTTTTGGTT 59.687 50.000 24.21 17.29 45.60 3.67
3663 5521 1.515521 GGTTGGGAACTCGTGCTTGG 61.516 60.000 0.00 0.00 0.00 3.61
3709 5572 0.114954 ACCGTACAAGGGGGAGTGTA 59.885 55.000 0.00 0.00 35.02 2.90
3733 5596 4.129737 GAGTGCCCTAGTCGCGCA 62.130 66.667 8.75 2.00 39.23 6.09
3814 5882 4.923942 CGCGGCTCATGCAGGGAT 62.924 66.667 0.00 0.00 46.62 3.85
3822 6407 1.380785 CATGCAGGGATGCCTTGGT 60.381 57.895 1.40 0.00 30.84 3.67
3986 6573 2.894257 AAGCACACATGGGGCGAGA 61.894 57.895 0.00 0.00 0.00 4.04
4128 7117 3.612681 GGCGGCGGATGGTAGCTA 61.613 66.667 9.78 0.00 0.00 3.32
4140 7328 0.459078 GGTAGCTAGTTGGGACGACC 59.541 60.000 0.00 0.00 40.81 4.79
4214 7403 2.617215 GGGGTGGGTGGGGAAGAT 60.617 66.667 0.00 0.00 0.00 2.40
4328 7530 3.897122 GGACAGGTGGGCCCAACA 61.897 66.667 40.79 9.97 35.80 3.33
4402 7605 7.388224 TGTTACAGATTAGACGCAATTTTGGTA 59.612 33.333 0.00 0.00 0.00 3.25
4403 7606 6.811253 ACAGATTAGACGCAATTTTGGTAA 57.189 33.333 0.00 0.00 0.00 2.85
4404 7607 7.209471 ACAGATTAGACGCAATTTTGGTAAA 57.791 32.000 0.00 0.00 0.00 2.01
4445 7648 6.893759 TCAAATGTGGTATCAAGTTGTTACG 58.106 36.000 14.85 3.50 0.00 3.18
4469 7673 5.184287 GCTAGCCTTAAATGTGGTGGTTTTA 59.816 40.000 2.29 0.00 0.00 1.52
4551 7755 8.834749 AAAGTTTGACTTAAGACAGATCCTAC 57.165 34.615 10.09 2.74 37.47 3.18
4553 7757 7.379750 AGTTTGACTTAAGACAGATCCTACAC 58.620 38.462 10.09 0.00 0.00 2.90
4590 7794 4.660168 TGGAGGGAGTATAACGGATAGTC 58.340 47.826 6.08 6.08 39.08 2.59
4596 7800 6.954684 AGGGAGTATAACGGATAGTCAATCAT 59.045 38.462 13.43 0.00 40.87 2.45
4601 7805 7.878127 AGTATAACGGATAGTCAATCATTTGGG 59.122 37.037 0.00 0.00 36.20 4.12
4691 7918 3.958860 GGTGGTGCTGGACTGGCT 61.959 66.667 0.00 0.00 0.00 4.75
4698 7925 4.056125 CTGGACTGGCTGACGCGA 62.056 66.667 15.93 0.00 36.88 5.87
4857 8084 2.826725 GTCCGGAAATATCCTCCTCGAT 59.173 50.000 5.23 0.00 44.17 3.59
4909 8136 0.319555 CTTCTTCCCGCTCGTCAACA 60.320 55.000 0.00 0.00 0.00 3.33
5049 8276 2.775856 GCTCGAGCTCATCACGGGA 61.776 63.158 29.88 0.00 38.21 5.14
5311 8538 2.430921 CGTCGTGACCACTGCTCC 60.431 66.667 0.00 0.00 0.00 4.70
5378 8605 1.000052 TGCATGTGTACTTCGAACGGA 60.000 47.619 0.00 0.00 0.00 4.69
5460 8687 2.332654 GGTTAGTTGGGCTGCGTGG 61.333 63.158 0.00 0.00 0.00 4.94
5488 8715 7.979115 TTCAAGGTCTGAATTTGTAAAAACG 57.021 32.000 3.33 0.00 39.20 3.60
5502 8729 6.885952 TGTAAAAACGGATGAAAATCAGGA 57.114 33.333 0.00 0.00 0.00 3.86
5510 8737 3.118112 GGATGAAAATCAGGAGCAGAGGA 60.118 47.826 0.00 0.00 0.00 3.71
5527 8754 2.040012 GAGGATGATCATGCCACTCCAT 59.960 50.000 22.14 3.15 0.00 3.41
5528 8755 2.160205 GGATGATCATGCCACTCCATG 58.840 52.381 14.30 0.00 43.04 3.66
5588 8815 2.851195 GATGGAATCAACGGCCATACT 58.149 47.619 2.24 0.00 44.70 2.12
5595 8822 3.404224 TCAACGGCCATACTTTGTGTA 57.596 42.857 2.24 0.00 35.37 2.90
5597 8824 3.749088 TCAACGGCCATACTTTGTGTAAG 59.251 43.478 2.24 0.00 39.87 2.34
5722 8949 3.422122 GCATTTGCATTCAAGGCGA 57.578 47.368 0.00 0.00 41.59 5.54
5723 8950 0.994263 GCATTTGCATTCAAGGCGAC 59.006 50.000 0.00 0.00 41.59 5.19
5724 8951 1.403249 GCATTTGCATTCAAGGCGACT 60.403 47.619 0.00 0.00 41.96 4.18
5725 8952 2.159393 GCATTTGCATTCAAGGCGACTA 60.159 45.455 0.00 0.00 39.96 2.59
5726 8953 3.688272 CATTTGCATTCAAGGCGACTAG 58.312 45.455 0.00 0.00 42.68 2.57
5727 8954 2.760634 TTGCATTCAAGGCGACTAGA 57.239 45.000 0.00 0.00 42.68 2.43
5728 8955 2.760634 TGCATTCAAGGCGACTAGAA 57.239 45.000 0.00 0.00 42.68 2.10
5729 8956 3.266510 TGCATTCAAGGCGACTAGAAT 57.733 42.857 0.00 0.00 42.68 2.40
5730 8957 3.609853 TGCATTCAAGGCGACTAGAATT 58.390 40.909 0.00 0.00 42.68 2.17
5731 8958 3.374988 TGCATTCAAGGCGACTAGAATTG 59.625 43.478 0.00 0.00 42.68 2.32
5732 8959 3.623060 GCATTCAAGGCGACTAGAATTGA 59.377 43.478 0.00 0.00 42.68 2.57
5737 8964 5.041287 TCAAGGCGACTAGAATTGATTACG 58.959 41.667 0.00 0.00 42.68 3.18
5741 8968 4.042398 GCGACTAGAATTGATTACGAGCA 58.958 43.478 0.00 0.00 0.00 4.26
5742 8969 4.085517 GCGACTAGAATTGATTACGAGCAC 60.086 45.833 0.00 0.00 0.00 4.40
5828 9059 4.877378 TTCGGACTCTAAACCTAAGCAA 57.123 40.909 0.00 0.00 0.00 3.91
5887 9118 9.612620 AGATATTTTGACTGTTCGAATTTGAAC 57.387 29.630 25.70 25.70 46.63 3.18
5888 9119 9.612620 GATATTTTGACTGTTCGAATTTGAACT 57.387 29.630 29.93 16.92 46.59 3.01
5889 9120 7.684062 ATTTTGACTGTTCGAATTTGAACTG 57.316 32.000 29.76 29.76 46.59 3.16
5890 9121 4.209452 TGACTGTTCGAATTTGAACTGC 57.791 40.909 30.65 25.11 46.59 4.40
5891 9122 3.876914 TGACTGTTCGAATTTGAACTGCT 59.123 39.130 30.65 22.30 46.59 4.24
5892 9123 5.053811 TGACTGTTCGAATTTGAACTGCTA 58.946 37.500 30.65 21.97 46.59 3.49
5893 9124 5.525745 TGACTGTTCGAATTTGAACTGCTAA 59.474 36.000 30.65 19.94 46.59 3.09
5894 9125 6.037720 TGACTGTTCGAATTTGAACTGCTAAA 59.962 34.615 30.65 18.23 46.59 1.85
5895 9126 6.791303 ACTGTTCGAATTTGAACTGCTAAAA 58.209 32.000 30.65 15.03 46.59 1.52
6016 9267 5.768164 GGTTAAAATCAGAAGTGAAGACCCA 59.232 40.000 0.00 0.00 35.88 4.51
6035 9286 0.767375 AAGTGAAGCTGAGGCCTCAA 59.233 50.000 34.30 18.17 40.13 3.02
6048 9299 0.735632 GCCTCAAGCACTCTCGACAG 60.736 60.000 0.00 0.00 42.97 3.51
6051 9302 0.238553 TCAAGCACTCTCGACAGACG 59.761 55.000 0.00 0.00 44.09 4.18
6055 9306 0.171455 GCACTCTCGACAGACGGATT 59.829 55.000 0.00 0.00 42.82 3.01
6074 9325 5.578776 GGATTGAATTTTCACCGTGATACC 58.421 41.667 1.09 0.00 36.83 2.73
6075 9326 4.671880 TTGAATTTTCACCGTGATACCG 57.328 40.909 1.09 0.00 36.83 4.02
6086 9337 2.135139 CGTGATACCGACCATTGGATG 58.865 52.381 10.37 0.66 0.00 3.51
6100 9351 3.694043 TTGGATGTGAGGTCGATTTGA 57.306 42.857 0.00 0.00 0.00 2.69
6109 9360 2.365617 GAGGTCGATTTGATCTAGGCCA 59.634 50.000 5.01 0.00 38.50 5.36
6110 9361 2.975489 AGGTCGATTTGATCTAGGCCAT 59.025 45.455 5.01 0.00 35.84 4.40
6111 9362 3.392616 AGGTCGATTTGATCTAGGCCATT 59.607 43.478 5.01 0.00 35.84 3.16
6112 9363 4.593206 AGGTCGATTTGATCTAGGCCATTA 59.407 41.667 5.01 0.00 35.84 1.90
6113 9364 4.932200 GGTCGATTTGATCTAGGCCATTAG 59.068 45.833 5.01 0.00 0.00 1.73
6114 9365 5.279506 GGTCGATTTGATCTAGGCCATTAGA 60.280 44.000 5.01 4.58 34.38 2.10
6115 9366 6.402222 GTCGATTTGATCTAGGCCATTAGAT 58.598 40.000 13.06 13.06 41.81 1.98
6123 9374 6.628644 ATCTAGGCCATTAGATCTTTACCC 57.371 41.667 5.01 0.00 35.94 3.69
6124 9375 5.473273 TCTAGGCCATTAGATCTTTACCCA 58.527 41.667 5.01 0.00 0.00 4.51
6125 9376 6.091555 TCTAGGCCATTAGATCTTTACCCAT 58.908 40.000 5.01 0.00 0.00 4.00
6126 9377 7.253421 TCTAGGCCATTAGATCTTTACCCATA 58.747 38.462 5.01 0.00 0.00 2.74
6127 9378 6.380079 AGGCCATTAGATCTTTACCCATAG 57.620 41.667 5.01 0.00 0.00 2.23
6128 9379 4.944317 GGCCATTAGATCTTTACCCATAGC 59.056 45.833 0.00 0.00 0.00 2.97
6129 9380 4.631813 GCCATTAGATCTTTACCCATAGCG 59.368 45.833 0.00 0.00 0.00 4.26
6155 9406 4.637276 TCAGCCGTCTGATAAACTTTCAA 58.363 39.130 0.00 0.00 43.95 2.69
6172 9423 7.008021 ACTTTCAATTGCATCCCTTTGTAAT 57.992 32.000 0.00 0.00 34.00 1.89
6185 9436 4.448493 CCCTTTGTAATATACATGCCCCCA 60.448 45.833 0.00 0.00 38.68 4.96
6187 9438 3.799432 TGTAATATACATGCCCCCACC 57.201 47.619 0.00 0.00 32.89 4.61
6190 9441 1.075601 ATATACATGCCCCCACCAGG 58.924 55.000 0.00 0.00 0.00 4.45
6215 9466 5.636543 GCAATTTGCTCAATTCCATATAGGC 59.363 40.000 14.11 0.00 40.96 3.93
6216 9467 6.739286 GCAATTTGCTCAATTCCATATAGGCA 60.739 38.462 14.11 0.00 40.96 4.75
6219 9470 7.692460 TTTGCTCAATTCCATATAGGCATAG 57.308 36.000 0.00 0.00 37.29 2.23
6221 9472 7.019656 TGCTCAATTCCATATAGGCATAGAA 57.980 36.000 0.00 0.00 37.29 2.10
6231 9482 8.390143 TCCATATAGGCATAGAAAATAAGGCAA 58.610 33.333 0.00 0.00 37.29 4.52
6254 9505 0.676782 CCCTGGTGAAAACCTAGCCG 60.677 60.000 0.00 0.00 0.00 5.52
6261 9512 0.035343 GAAAACCTAGCCGCCTCCTT 60.035 55.000 0.00 0.00 0.00 3.36
6290 9541 6.627087 ATGTAGGTTCTCTCCTTTGATTCA 57.373 37.500 0.00 0.00 38.86 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 1.374758 GACGCACTCCTCAACCAGG 60.375 63.158 0.00 0.00 45.15 4.45
22 23 1.734477 CGACGCACTCCTCAACCAG 60.734 63.158 0.00 0.00 0.00 4.00
23 24 2.338620 CGACGCACTCCTCAACCA 59.661 61.111 0.00 0.00 0.00 3.67
24 25 2.432628 CCGACGCACTCCTCAACC 60.433 66.667 0.00 0.00 0.00 3.77
25 26 1.733399 GTCCGACGCACTCCTCAAC 60.733 63.158 0.00 0.00 0.00 3.18
26 27 1.901948 AGTCCGACGCACTCCTCAA 60.902 57.895 0.00 0.00 0.00 3.02
27 28 2.282251 AGTCCGACGCACTCCTCA 60.282 61.111 0.00 0.00 0.00 3.86
28 29 2.179517 CAGTCCGACGCACTCCTC 59.820 66.667 0.00 0.00 0.00 3.71
29 30 3.374402 CCAGTCCGACGCACTCCT 61.374 66.667 0.00 0.00 0.00 3.69
30 31 3.681835 ACCAGTCCGACGCACTCC 61.682 66.667 0.00 0.00 0.00 3.85
31 32 2.430921 CACCAGTCCGACGCACTC 60.431 66.667 0.00 0.00 0.00 3.51
32 33 3.991051 CCACCAGTCCGACGCACT 61.991 66.667 0.00 0.00 0.00 4.40
33 34 3.296709 ATCCACCAGTCCGACGCAC 62.297 63.158 0.00 0.00 0.00 5.34
34 35 2.994995 ATCCACCAGTCCGACGCA 60.995 61.111 0.00 0.00 0.00 5.24
35 36 2.509336 CATCCACCAGTCCGACGC 60.509 66.667 0.00 0.00 0.00 5.19
36 37 2.509336 GCATCCACCAGTCCGACG 60.509 66.667 0.00 0.00 0.00 5.12
37 38 2.125106 GGCATCCACCAGTCCGAC 60.125 66.667 0.00 0.00 0.00 4.79
38 39 2.523740 TAGGGCATCCACCAGTCCGA 62.524 60.000 0.00 0.00 34.83 4.55
39 40 1.410850 ATAGGGCATCCACCAGTCCG 61.411 60.000 0.00 0.00 34.83 4.79
40 41 1.348036 GTATAGGGCATCCACCAGTCC 59.652 57.143 0.00 0.00 34.83 3.85
41 42 1.348036 GGTATAGGGCATCCACCAGTC 59.652 57.143 0.00 0.00 34.83 3.51
42 43 1.435256 GGTATAGGGCATCCACCAGT 58.565 55.000 0.00 0.00 34.83 4.00
43 44 0.693049 GGGTATAGGGCATCCACCAG 59.307 60.000 4.74 0.00 30.48 4.00
44 45 1.125093 CGGGTATAGGGCATCCACCA 61.125 60.000 4.74 0.00 30.48 4.17
45 46 1.677552 CGGGTATAGGGCATCCACC 59.322 63.158 0.00 0.00 34.83 4.61
46 47 1.677552 CCGGGTATAGGGCATCCAC 59.322 63.158 0.00 0.00 34.83 4.02
47 48 4.225860 CCGGGTATAGGGCATCCA 57.774 61.111 0.00 0.00 34.83 3.41
52 53 3.999948 GTCCGCCGGGTATAGGGC 62.000 72.222 1.90 0.32 45.95 5.19
53 54 3.677648 CGTCCGCCGGGTATAGGG 61.678 72.222 1.90 0.00 33.83 3.53
54 55 2.908940 ACGTCCGCCGGGTATAGG 60.909 66.667 1.90 0.00 42.24 2.57
55 56 2.333938 CACGTCCGCCGGGTATAG 59.666 66.667 1.90 0.00 42.24 1.31
56 57 3.903282 GCACGTCCGCCGGGTATA 61.903 66.667 1.90 0.00 43.72 1.47
65 66 3.605749 ATCCCAACCAGCACGTCCG 62.606 63.158 0.00 0.00 0.00 4.79
66 67 1.745489 GATCCCAACCAGCACGTCC 60.745 63.158 0.00 0.00 0.00 4.79
67 68 0.741221 GAGATCCCAACCAGCACGTC 60.741 60.000 0.00 0.00 0.00 4.34
68 69 1.296715 GAGATCCCAACCAGCACGT 59.703 57.895 0.00 0.00 0.00 4.49
69 70 0.742281 CTGAGATCCCAACCAGCACG 60.742 60.000 0.00 0.00 0.00 5.34
70 71 0.393537 CCTGAGATCCCAACCAGCAC 60.394 60.000 0.00 0.00 0.00 4.40
71 72 0.842030 ACCTGAGATCCCAACCAGCA 60.842 55.000 0.00 0.00 0.00 4.41
72 73 0.107459 GACCTGAGATCCCAACCAGC 60.107 60.000 0.00 0.00 0.00 4.85
73 74 1.577736 AGACCTGAGATCCCAACCAG 58.422 55.000 0.00 0.00 0.00 4.00
74 75 2.044793 AAGACCTGAGATCCCAACCA 57.955 50.000 0.00 0.00 0.00 3.67
75 76 3.375699 TCTAAGACCTGAGATCCCAACC 58.624 50.000 0.00 0.00 0.00 3.77
76 77 4.407296 ACATCTAAGACCTGAGATCCCAAC 59.593 45.833 0.00 0.00 29.73 3.77
77 78 4.624913 ACATCTAAGACCTGAGATCCCAA 58.375 43.478 0.00 0.00 29.73 4.12
78 79 4.271807 ACATCTAAGACCTGAGATCCCA 57.728 45.455 0.00 0.00 29.73 4.37
79 80 5.245075 CCTAACATCTAAGACCTGAGATCCC 59.755 48.000 0.00 0.00 29.73 3.85
80 81 5.836358 ACCTAACATCTAAGACCTGAGATCC 59.164 44.000 0.00 0.00 29.73 3.36
81 82 6.969993 ACCTAACATCTAAGACCTGAGATC 57.030 41.667 0.00 0.00 29.73 2.75
82 83 7.365117 CCAAACCTAACATCTAAGACCTGAGAT 60.365 40.741 0.00 0.00 32.48 2.75
83 84 6.070767 CCAAACCTAACATCTAAGACCTGAGA 60.071 42.308 0.00 0.00 0.00 3.27
84 85 6.109359 CCAAACCTAACATCTAAGACCTGAG 58.891 44.000 0.00 0.00 0.00 3.35
85 86 5.570844 GCCAAACCTAACATCTAAGACCTGA 60.571 44.000 0.00 0.00 0.00 3.86
86 87 4.636206 GCCAAACCTAACATCTAAGACCTG 59.364 45.833 0.00 0.00 0.00 4.00
87 88 4.536489 AGCCAAACCTAACATCTAAGACCT 59.464 41.667 0.00 0.00 0.00 3.85
88 89 4.636206 CAGCCAAACCTAACATCTAAGACC 59.364 45.833 0.00 0.00 0.00 3.85
89 90 4.095036 GCAGCCAAACCTAACATCTAAGAC 59.905 45.833 0.00 0.00 0.00 3.01
90 91 4.261801 GCAGCCAAACCTAACATCTAAGA 58.738 43.478 0.00 0.00 0.00 2.10
91 92 3.063997 CGCAGCCAAACCTAACATCTAAG 59.936 47.826 0.00 0.00 0.00 2.18
92 93 3.006940 CGCAGCCAAACCTAACATCTAA 58.993 45.455 0.00 0.00 0.00 2.10
93 94 2.235155 TCGCAGCCAAACCTAACATCTA 59.765 45.455 0.00 0.00 0.00 1.98
94 95 1.003118 TCGCAGCCAAACCTAACATCT 59.997 47.619 0.00 0.00 0.00 2.90
95 96 1.398390 CTCGCAGCCAAACCTAACATC 59.602 52.381 0.00 0.00 0.00 3.06
96 97 1.453155 CTCGCAGCCAAACCTAACAT 58.547 50.000 0.00 0.00 0.00 2.71
97 98 0.605319 CCTCGCAGCCAAACCTAACA 60.605 55.000 0.00 0.00 0.00 2.41
98 99 0.605589 ACCTCGCAGCCAAACCTAAC 60.606 55.000 0.00 0.00 0.00 2.34
99 100 0.321298 GACCTCGCAGCCAAACCTAA 60.321 55.000 0.00 0.00 0.00 2.69
100 101 1.192146 AGACCTCGCAGCCAAACCTA 61.192 55.000 0.00 0.00 0.00 3.08
101 102 2.032681 GACCTCGCAGCCAAACCT 59.967 61.111 0.00 0.00 0.00 3.50
102 103 2.032681 AGACCTCGCAGCCAAACC 59.967 61.111 0.00 0.00 0.00 3.27
103 104 1.166531 AACAGACCTCGCAGCCAAAC 61.167 55.000 0.00 0.00 0.00 2.93
104 105 0.465460 AAACAGACCTCGCAGCCAAA 60.465 50.000 0.00 0.00 0.00 3.28
105 106 1.148273 AAACAGACCTCGCAGCCAA 59.852 52.632 0.00 0.00 0.00 4.52
106 107 1.597854 CAAACAGACCTCGCAGCCA 60.598 57.895 0.00 0.00 0.00 4.75
107 108 2.328099 CCAAACAGACCTCGCAGCC 61.328 63.158 0.00 0.00 0.00 4.85
108 109 0.320421 TACCAAACAGACCTCGCAGC 60.320 55.000 0.00 0.00 0.00 5.25
109 110 2.386661 ATACCAAACAGACCTCGCAG 57.613 50.000 0.00 0.00 0.00 5.18
110 111 2.851263 AATACCAAACAGACCTCGCA 57.149 45.000 0.00 0.00 0.00 5.10
111 112 3.195661 CCTAATACCAAACAGACCTCGC 58.804 50.000 0.00 0.00 0.00 5.03
112 113 3.118738 AGCCTAATACCAAACAGACCTCG 60.119 47.826 0.00 0.00 0.00 4.63
113 114 4.081087 TGAGCCTAATACCAAACAGACCTC 60.081 45.833 0.00 0.00 0.00 3.85
114 115 3.844211 TGAGCCTAATACCAAACAGACCT 59.156 43.478 0.00 0.00 0.00 3.85
115 116 4.081087 TCTGAGCCTAATACCAAACAGACC 60.081 45.833 0.00 0.00 0.00 3.85
116 117 4.870991 GTCTGAGCCTAATACCAAACAGAC 59.129 45.833 0.00 0.00 43.32 3.51
117 118 4.777896 AGTCTGAGCCTAATACCAAACAGA 59.222 41.667 0.00 0.00 0.00 3.41
118 119 5.091261 AGTCTGAGCCTAATACCAAACAG 57.909 43.478 0.00 0.00 0.00 3.16
119 120 6.382859 TGATAGTCTGAGCCTAATACCAAACA 59.617 38.462 0.00 0.00 0.00 2.83
120 121 6.817184 TGATAGTCTGAGCCTAATACCAAAC 58.183 40.000 0.00 0.00 0.00 2.93
121 122 6.463049 GCTGATAGTCTGAGCCTAATACCAAA 60.463 42.308 0.00 0.00 0.00 3.28
122 123 5.011125 GCTGATAGTCTGAGCCTAATACCAA 59.989 44.000 0.00 0.00 0.00 3.67
123 124 4.524714 GCTGATAGTCTGAGCCTAATACCA 59.475 45.833 0.00 0.00 0.00 3.25
124 125 4.524714 TGCTGATAGTCTGAGCCTAATACC 59.475 45.833 0.00 0.00 31.31 2.73
125 126 5.713792 TGCTGATAGTCTGAGCCTAATAC 57.286 43.478 0.00 0.00 31.31 1.89
126 127 5.420421 GGATGCTGATAGTCTGAGCCTAATA 59.580 44.000 0.00 0.00 31.31 0.98
127 128 4.222588 GGATGCTGATAGTCTGAGCCTAAT 59.777 45.833 0.00 0.00 31.31 1.73
128 129 3.576118 GGATGCTGATAGTCTGAGCCTAA 59.424 47.826 0.00 0.00 31.31 2.69
129 130 3.161067 GGATGCTGATAGTCTGAGCCTA 58.839 50.000 0.00 0.00 31.31 3.93
130 131 1.969923 GGATGCTGATAGTCTGAGCCT 59.030 52.381 0.00 0.00 31.31 4.58
131 132 1.001860 GGGATGCTGATAGTCTGAGCC 59.998 57.143 0.00 0.00 31.31 4.70
132 133 1.969923 AGGGATGCTGATAGTCTGAGC 59.030 52.381 0.00 0.00 0.00 4.26
133 134 2.288948 GCAGGGATGCTGATAGTCTGAG 60.289 54.545 0.00 0.00 0.00 3.35
134 135 1.690893 GCAGGGATGCTGATAGTCTGA 59.309 52.381 0.00 0.00 0.00 3.27
135 136 1.415289 TGCAGGGATGCTGATAGTCTG 59.585 52.381 1.53 0.00 35.49 3.51
136 137 1.798626 TGCAGGGATGCTGATAGTCT 58.201 50.000 1.53 0.00 35.49 3.24
137 138 2.038164 TGATGCAGGGATGCTGATAGTC 59.962 50.000 1.53 0.00 35.49 2.59
138 139 2.052468 TGATGCAGGGATGCTGATAGT 58.948 47.619 1.53 0.00 35.49 2.12
139 140 2.812591 GTTGATGCAGGGATGCTGATAG 59.187 50.000 1.53 0.00 35.49 2.08
140 141 2.440627 AGTTGATGCAGGGATGCTGATA 59.559 45.455 1.53 0.00 35.49 2.15
141 142 1.214673 AGTTGATGCAGGGATGCTGAT 59.785 47.619 1.53 0.00 35.49 2.90
142 143 0.622136 AGTTGATGCAGGGATGCTGA 59.378 50.000 1.53 0.00 35.49 4.26
143 144 0.738975 CAGTTGATGCAGGGATGCTG 59.261 55.000 1.53 0.00 35.49 4.41
144 145 0.395311 CCAGTTGATGCAGGGATGCT 60.395 55.000 1.53 0.00 35.49 3.79
145 146 0.394762 TCCAGTTGATGCAGGGATGC 60.395 55.000 0.00 0.00 0.00 3.91
146 147 2.359981 ATCCAGTTGATGCAGGGATG 57.640 50.000 0.00 0.00 37.00 3.51
147 148 2.374504 CCTATCCAGTTGATGCAGGGAT 59.625 50.000 0.00 0.00 41.13 3.85
148 149 1.770658 CCTATCCAGTTGATGCAGGGA 59.229 52.381 0.00 0.00 34.76 4.20
149 150 1.770658 TCCTATCCAGTTGATGCAGGG 59.229 52.381 0.00 0.00 32.19 4.45
150 151 2.437281 ACTCCTATCCAGTTGATGCAGG 59.563 50.000 0.00 0.00 34.76 4.85
151 152 3.834489 ACTCCTATCCAGTTGATGCAG 57.166 47.619 0.00 0.00 34.76 4.41
152 153 3.643320 CCTACTCCTATCCAGTTGATGCA 59.357 47.826 0.00 0.00 34.76 3.96
153 154 3.007398 CCCTACTCCTATCCAGTTGATGC 59.993 52.174 0.00 0.00 34.76 3.91
154 155 4.282195 GTCCCTACTCCTATCCAGTTGATG 59.718 50.000 0.00 0.00 34.76 3.07
155 156 4.078571 TGTCCCTACTCCTATCCAGTTGAT 60.079 45.833 0.00 0.00 37.49 2.57
156 157 3.271225 TGTCCCTACTCCTATCCAGTTGA 59.729 47.826 0.00 0.00 0.00 3.18
157 158 3.639094 CTGTCCCTACTCCTATCCAGTTG 59.361 52.174 0.00 0.00 0.00 3.16
158 159 3.532232 TCTGTCCCTACTCCTATCCAGTT 59.468 47.826 0.00 0.00 0.00 3.16
159 160 3.132056 TCTGTCCCTACTCCTATCCAGT 58.868 50.000 0.00 0.00 0.00 4.00
160 161 3.885976 TCTGTCCCTACTCCTATCCAG 57.114 52.381 0.00 0.00 0.00 3.86
161 162 3.467483 ACATCTGTCCCTACTCCTATCCA 59.533 47.826 0.00 0.00 0.00 3.41
162 163 4.120946 ACATCTGTCCCTACTCCTATCC 57.879 50.000 0.00 0.00 0.00 2.59
163 164 4.262249 GCAACATCTGTCCCTACTCCTATC 60.262 50.000 0.00 0.00 0.00 2.08
164 165 3.643792 GCAACATCTGTCCCTACTCCTAT 59.356 47.826 0.00 0.00 0.00 2.57
165 166 3.031736 GCAACATCTGTCCCTACTCCTA 58.968 50.000 0.00 0.00 0.00 2.94
166 167 1.834263 GCAACATCTGTCCCTACTCCT 59.166 52.381 0.00 0.00 0.00 3.69
167 168 1.134371 GGCAACATCTGTCCCTACTCC 60.134 57.143 0.00 0.00 0.00 3.85
168 169 1.834263 AGGCAACATCTGTCCCTACTC 59.166 52.381 1.82 0.00 41.41 2.59
169 170 1.958288 AGGCAACATCTGTCCCTACT 58.042 50.000 1.82 0.00 41.41 2.57
170 171 2.103263 CCTAGGCAACATCTGTCCCTAC 59.897 54.545 0.00 0.00 41.41 3.18
171 172 2.398588 CCTAGGCAACATCTGTCCCTA 58.601 52.381 0.00 8.53 41.41 3.53
172 173 1.207791 CCTAGGCAACATCTGTCCCT 58.792 55.000 0.00 7.41 41.41 4.20
173 174 0.464554 GCCTAGGCAACATCTGTCCC 60.465 60.000 29.33 0.00 41.49 4.46
174 175 0.811616 CGCCTAGGCAACATCTGTCC 60.812 60.000 32.47 0.00 42.06 4.02
175 176 0.811616 CCGCCTAGGCAACATCTGTC 60.812 60.000 32.47 0.00 42.06 3.51
176 177 1.221840 CCGCCTAGGCAACATCTGT 59.778 57.895 32.47 0.00 42.06 3.41
177 178 1.091771 CACCGCCTAGGCAACATCTG 61.092 60.000 32.47 14.54 46.52 2.90
178 179 1.221840 CACCGCCTAGGCAACATCT 59.778 57.895 32.47 5.34 46.52 2.90
179 180 1.819632 CCACCGCCTAGGCAACATC 60.820 63.158 32.47 3.00 46.52 3.06
180 181 2.272146 CCACCGCCTAGGCAACAT 59.728 61.111 32.47 12.16 46.52 2.71
186 187 9.731723 ATAGTAAAACTAAAGCCACCGCCTAGG 62.732 44.444 3.67 3.67 39.11 3.02
187 188 2.109425 AAACTAAAGCCACCGCCTAG 57.891 50.000 0.00 0.00 34.57 3.02
188 189 2.572209 AAAACTAAAGCCACCGCCTA 57.428 45.000 0.00 0.00 34.57 3.93
189 190 2.156917 GTAAAACTAAAGCCACCGCCT 58.843 47.619 0.00 0.00 34.57 5.52
190 191 2.156917 AGTAAAACTAAAGCCACCGCC 58.843 47.619 0.00 0.00 34.57 6.13
191 192 5.106436 ACAATAGTAAAACTAAAGCCACCGC 60.106 40.000 0.00 0.00 33.89 5.68
192 193 6.490566 ACAATAGTAAAACTAAAGCCACCG 57.509 37.500 0.00 0.00 33.89 4.94
193 194 8.354426 TCAAACAATAGTAAAACTAAAGCCACC 58.646 33.333 0.00 0.00 33.89 4.61
194 195 9.177304 GTCAAACAATAGTAAAACTAAAGCCAC 57.823 33.333 0.00 0.00 33.89 5.01
195 196 9.127277 AGTCAAACAATAGTAAAACTAAAGCCA 57.873 29.630 0.00 0.00 33.89 4.75
196 197 9.961265 AAGTCAAACAATAGTAAAACTAAAGCC 57.039 29.630 0.00 0.00 33.89 4.35
206 207 9.841295 AGACCTTACAAAGTCAAACAATAGTAA 57.159 29.630 0.00 0.00 0.00 2.24
207 208 9.841295 AAGACCTTACAAAGTCAAACAATAGTA 57.159 29.630 0.00 0.00 0.00 1.82
208 209 8.621286 CAAGACCTTACAAAGTCAAACAATAGT 58.379 33.333 0.00 0.00 0.00 2.12
209 210 8.621286 ACAAGACCTTACAAAGTCAAACAATAG 58.379 33.333 0.00 0.00 0.00 1.73
210 211 8.402472 CACAAGACCTTACAAAGTCAAACAATA 58.598 33.333 0.00 0.00 0.00 1.90
211 212 7.093945 ACACAAGACCTTACAAAGTCAAACAAT 60.094 33.333 0.00 0.00 0.00 2.71
212 213 6.207810 ACACAAGACCTTACAAAGTCAAACAA 59.792 34.615 0.00 0.00 0.00 2.83
213 214 5.708230 ACACAAGACCTTACAAAGTCAAACA 59.292 36.000 0.00 0.00 0.00 2.83
214 215 6.027749 CACACAAGACCTTACAAAGTCAAAC 58.972 40.000 0.00 0.00 0.00 2.93
215 216 5.941058 TCACACAAGACCTTACAAAGTCAAA 59.059 36.000 0.00 0.00 0.00 2.69
216 217 5.492895 TCACACAAGACCTTACAAAGTCAA 58.507 37.500 0.00 0.00 0.00 3.18
217 218 5.092554 TCACACAAGACCTTACAAAGTCA 57.907 39.130 0.00 0.00 0.00 3.41
218 219 6.619801 ATTCACACAAGACCTTACAAAGTC 57.380 37.500 0.00 0.00 0.00 3.01
219 220 8.691661 ATTATTCACACAAGACCTTACAAAGT 57.308 30.769 0.00 0.00 0.00 2.66
232 233 9.853555 CAGCCACTTTATTAATTATTCACACAA 57.146 29.630 0.00 0.00 0.00 3.33
233 234 7.973388 GCAGCCACTTTATTAATTATTCACACA 59.027 33.333 0.00 0.00 0.00 3.72
234 235 7.973388 TGCAGCCACTTTATTAATTATTCACAC 59.027 33.333 0.00 0.00 0.00 3.82
235 236 8.060931 TGCAGCCACTTTATTAATTATTCACA 57.939 30.769 0.00 0.00 0.00 3.58
236 237 8.971321 CATGCAGCCACTTTATTAATTATTCAC 58.029 33.333 0.00 0.00 0.00 3.18
237 238 7.652909 GCATGCAGCCACTTTATTAATTATTCA 59.347 33.333 14.21 0.00 37.23 2.57
238 239 7.652909 TGCATGCAGCCACTTTATTAATTATTC 59.347 33.333 18.46 0.00 44.83 1.75
239 240 7.499292 TGCATGCAGCCACTTTATTAATTATT 58.501 30.769 18.46 0.00 44.83 1.40
240 241 7.053316 TGCATGCAGCCACTTTATTAATTAT 57.947 32.000 18.46 0.00 44.83 1.28
241 242 6.462552 TGCATGCAGCCACTTTATTAATTA 57.537 33.333 18.46 0.00 44.83 1.40
242 243 5.341872 TGCATGCAGCCACTTTATTAATT 57.658 34.783 18.46 0.00 44.83 1.40
243 244 5.535333 GATGCATGCAGCCACTTTATTAAT 58.465 37.500 25.21 2.11 44.83 1.40
244 245 4.497842 CGATGCATGCAGCCACTTTATTAA 60.498 41.667 28.76 0.00 44.83 1.40
245 246 3.003585 CGATGCATGCAGCCACTTTATTA 59.996 43.478 28.76 0.00 44.83 0.98
246 247 2.223641 CGATGCATGCAGCCACTTTATT 60.224 45.455 28.76 6.59 44.83 1.40
247 248 1.335810 CGATGCATGCAGCCACTTTAT 59.664 47.619 28.76 7.39 44.83 1.40
248 249 0.734309 CGATGCATGCAGCCACTTTA 59.266 50.000 28.76 0.09 44.83 1.85
249 250 1.246056 ACGATGCATGCAGCCACTTT 61.246 50.000 28.76 9.02 44.83 2.66
250 251 1.651240 GACGATGCATGCAGCCACTT 61.651 55.000 28.76 9.83 44.83 3.16
251 252 2.045634 ACGATGCATGCAGCCACT 60.046 55.556 28.76 10.64 44.83 4.00
252 253 2.406401 GACGATGCATGCAGCCAC 59.594 61.111 28.76 18.86 44.83 5.01
253 254 3.197092 CGACGATGCATGCAGCCA 61.197 61.111 28.76 3.84 44.83 4.75
254 255 2.879070 CTCGACGATGCATGCAGCC 61.879 63.158 28.76 19.54 44.83 4.85
255 256 1.220169 ATCTCGACGATGCATGCAGC 61.220 55.000 25.69 25.69 45.96 5.25
256 257 0.507358 CATCTCGACGATGCATGCAG 59.493 55.000 26.69 15.79 42.75 4.41
257 258 2.596875 CATCTCGACGATGCATGCA 58.403 52.632 25.04 25.04 42.75 3.96
264 265 1.361993 GCCTCTGCATCTCGACGAT 59.638 57.895 0.00 0.00 37.47 3.73
265 266 2.775856 GGCCTCTGCATCTCGACGA 61.776 63.158 0.00 0.00 40.13 4.20
266 267 2.279120 GGCCTCTGCATCTCGACG 60.279 66.667 0.00 0.00 40.13 5.12
267 268 2.279120 CGGCCTCTGCATCTCGAC 60.279 66.667 0.00 0.00 40.13 4.20
268 269 3.531207 CCGGCCTCTGCATCTCGA 61.531 66.667 0.00 0.00 40.13 4.04
269 270 4.598894 CCCGGCCTCTGCATCTCG 62.599 72.222 0.00 0.00 40.13 4.04
270 271 4.247380 CCCCGGCCTCTGCATCTC 62.247 72.222 0.00 0.00 40.13 2.75
282 283 4.499116 ATGGAGGAGGACCCCCGG 62.499 72.222 0.00 0.00 37.58 5.73
283 284 1.984288 GAAATGGAGGAGGACCCCCG 61.984 65.000 0.00 0.00 37.58 5.73
284 285 0.624795 AGAAATGGAGGAGGACCCCC 60.625 60.000 0.00 0.00 36.73 5.40
285 286 2.191981 TAGAAATGGAGGAGGACCCC 57.808 55.000 0.00 0.00 36.73 4.95
286 287 4.586306 TTTTAGAAATGGAGGAGGACCC 57.414 45.455 0.00 0.00 36.73 4.46
315 316 5.065602 GCACAACATGATGAGCTTATTCTCA 59.934 40.000 16.21 0.00 45.97 3.27
316 317 5.296283 AGCACAACATGATGAGCTTATTCTC 59.704 40.000 19.52 0.00 43.35 2.87
317 318 5.191426 AGCACAACATGATGAGCTTATTCT 58.809 37.500 19.52 0.23 43.35 2.40
318 319 5.065602 TGAGCACAACATGATGAGCTTATTC 59.934 40.000 24.36 14.59 45.36 1.75
417 418 8.312564 GGTAGTTACAACTTACAAGGAGAAGAT 58.687 37.037 0.00 0.00 40.37 2.40
426 427 6.961721 AGGATAGGGGTAGTTACAACTTACAA 59.038 38.462 0.00 0.00 40.37 2.41
427 428 6.505754 AGGATAGGGGTAGTTACAACTTACA 58.494 40.000 0.00 0.00 40.37 2.41
428 429 8.539117 TTAGGATAGGGGTAGTTACAACTTAC 57.461 38.462 0.00 0.00 40.37 2.34
429 430 9.151177 CATTAGGATAGGGGTAGTTACAACTTA 57.849 37.037 0.00 0.00 40.37 2.24
430 431 7.626487 ACATTAGGATAGGGGTAGTTACAACTT 59.374 37.037 0.00 0.00 40.37 2.66
431 432 7.137567 ACATTAGGATAGGGGTAGTTACAACT 58.862 38.462 0.00 0.00 42.91 3.16
432 433 7.370905 ACATTAGGATAGGGGTAGTTACAAC 57.629 40.000 0.00 0.00 0.00 3.32
512 513 3.251484 TGTGAGGTGGAAGAGGATTTCT 58.749 45.455 0.00 0.00 37.93 2.52
513 514 3.703001 TGTGAGGTGGAAGAGGATTTC 57.297 47.619 0.00 0.00 0.00 2.17
696 1390 5.928976 TCTCCTTGACAAAAATGAGTCAGA 58.071 37.500 0.00 0.00 44.65 3.27
700 1394 5.360714 TGCTTTCTCCTTGACAAAAATGAGT 59.639 36.000 0.00 0.00 0.00 3.41
777 1477 7.391554 GCAATAGGTCTGCCAATATATTCTTCA 59.608 37.037 0.00 0.00 37.19 3.02
833 1533 0.848942 CGTATGACGCATGCTGAGAC 59.151 55.000 17.13 5.70 33.65 3.36
890 1599 1.065564 GTCAATGCCTCTTCTGCTCCT 60.066 52.381 0.00 0.00 0.00 3.69
982 1691 1.905215 CATCTTGGTGGAGGTCAGAGT 59.095 52.381 0.00 0.00 0.00 3.24
1040 1749 1.476833 CGAGGAGGAGGAGGAGAAGAG 60.477 61.905 0.00 0.00 0.00 2.85
1213 1922 2.592308 CCCAGGCCAAGGTCTAGC 59.408 66.667 5.01 0.00 0.00 3.42
1241 1950 2.270205 CGATGAGGCTGCCCTTGT 59.730 61.111 16.57 0.00 43.12 3.16
1408 2117 0.787787 GCGTTGTGCGACAGATACAA 59.212 50.000 0.00 0.00 44.77 2.41
1948 2666 2.825836 AGGGGCGTCGTAGTACGG 60.826 66.667 21.85 8.58 42.81 4.02
2284 3002 0.969894 AGGTGGTTCTCGAACTCCTG 59.030 55.000 18.38 0.00 40.71 3.86
2447 3165 3.575256 ACGGCCGTAGTAATCATATTGGA 59.425 43.478 33.34 0.00 0.00 3.53
2469 3944 1.002257 TACCGACTACCTGCACCGA 60.002 57.895 0.00 0.00 0.00 4.69
2481 3956 2.470821 GACTATGCATGGTGTACCGAC 58.529 52.381 21.49 0.00 39.43 4.79
2482 3957 1.066454 CGACTATGCATGGTGTACCGA 59.934 52.381 21.49 0.00 39.43 4.69
2507 4004 3.264450 ACATAGGCACAAAGTTAGCTCCT 59.736 43.478 0.00 0.00 0.00 3.69
2553 4050 4.936411 TCTACTTTGTTGTCGGTTTTGACA 59.064 37.500 0.00 0.00 46.63 3.58
2566 4063 4.223923 CACCTCATCTCCCTCTACTTTGTT 59.776 45.833 0.00 0.00 0.00 2.83
2592 4089 0.813184 TTCACTAGGGGTTCTACGCG 59.187 55.000 3.53 3.53 31.02 6.01
2601 4098 2.880167 GCAAGGGTTTCTTCACTAGGGG 60.880 54.545 0.00 0.00 32.41 4.79
2610 4107 0.468771 AGCAGCAGCAAGGGTTTCTT 60.469 50.000 3.17 0.00 45.49 2.52
2623 4120 6.519679 AAATAATCAACAGATCAAGCAGCA 57.480 33.333 0.00 0.00 0.00 4.41
2648 4145 6.879993 TGTGTAATGGAATTAAGCTTTCCGTA 59.120 34.615 3.20 0.00 44.67 4.02
2677 4174 3.725490 ACTCAAGTAGGTCAACGGTTTC 58.275 45.455 0.00 0.00 0.00 2.78
2680 4179 3.494332 AGTACTCAAGTAGGTCAACGGT 58.506 45.455 0.00 0.00 0.00 4.83
2682 4181 5.117355 TGAAGTACTCAAGTAGGTCAACG 57.883 43.478 0.00 0.00 0.00 4.10
2697 4198 9.476761 CAGCAATTGTTTTTCTTTTTGAAGTAC 57.523 29.630 7.40 0.00 35.89 2.73
2721 4223 4.246458 CCGGAAGAAAGGAGTAACTTCAG 58.754 47.826 0.00 0.00 39.99 3.02
2736 4238 5.090845 TGACATCCATATAATCCCGGAAGA 58.909 41.667 0.73 0.00 0.00 2.87
2757 4259 1.533625 AAGCGCTAATTTGTGGCTGA 58.466 45.000 12.05 0.00 33.58 4.26
2813 4319 6.920569 ATCGGTAATCAGGTCAATTTACAC 57.079 37.500 0.00 0.00 0.00 2.90
2827 4333 8.448615 GGCAGTTGGTTAAATATATCGGTAATC 58.551 37.037 0.00 0.00 0.00 1.75
2832 4338 6.092259 GCTAGGCAGTTGGTTAAATATATCGG 59.908 42.308 0.00 0.00 0.00 4.18
2835 4341 6.848069 TGGCTAGGCAGTTGGTTAAATATAT 58.152 36.000 16.16 0.00 0.00 0.86
2846 4352 4.941263 TGTAGTTAATTGGCTAGGCAGTTG 59.059 41.667 29.70 0.00 0.00 3.16
2911 4417 5.660533 TGGGGAGTCCATATACATCATGTA 58.339 41.667 12.30 0.00 41.46 2.29
2912 4418 4.502415 TGGGGAGTCCATATACATCATGT 58.498 43.478 12.30 0.00 41.46 3.21
2961 4467 9.802039 AAACCATACAAAGTTTGACCTAAGATA 57.198 29.630 22.23 1.95 34.97 1.98
3041 4547 7.951806 TGAGATGCATCCTGGGATTAATTTTAT 59.048 33.333 23.06 0.00 31.62 1.40
3042 4548 7.296856 TGAGATGCATCCTGGGATTAATTTTA 58.703 34.615 23.06 0.00 31.62 1.52
3047 4553 4.351704 TCATGAGATGCATCCTGGGATTAA 59.648 41.667 23.06 0.00 34.15 1.40
3049 4555 2.714793 TCATGAGATGCATCCTGGGATT 59.285 45.455 23.06 2.26 34.15 3.01
3072 4578 4.496341 CCACATCCACAATATCAAACGAGC 60.496 45.833 0.00 0.00 0.00 5.03
3076 4582 5.659440 AACCCACATCCACAATATCAAAC 57.341 39.130 0.00 0.00 0.00 2.93
3124 4630 7.976712 AGTGGTACTAAATTGTTACCCTAACA 58.023 34.615 7.57 0.00 46.13 2.41
3157 4663 0.467290 TTGGTGGTTCTTGTGCCCTC 60.467 55.000 0.00 0.00 0.00 4.30
3193 4702 1.818674 GACAATCAATGCTCCCCGTTT 59.181 47.619 0.00 0.00 0.00 3.60
3263 4772 1.098869 ACAAACATGCCACGTCAACA 58.901 45.000 0.00 0.00 0.00 3.33
3265 4774 1.098869 ACACAAACATGCCACGTCAA 58.901 45.000 0.00 0.00 0.00 3.18
3341 4871 5.033589 TGTTGAAATGCCCACAAGAAAAT 57.966 34.783 0.00 0.00 0.00 1.82
3368 4898 0.040958 GCTGATAAGCGCCCATTTCG 60.041 55.000 2.29 0.00 0.00 3.46
3454 4986 2.345244 CTCCAGCGGCTTGACAGT 59.655 61.111 0.00 0.00 0.00 3.55
3506 5065 3.052329 GAGAGGGAAATCAGGGAGGAAT 58.948 50.000 0.00 0.00 0.00 3.01
3529 5371 0.668535 GGCAGTTGGTCCTGTTTGAC 59.331 55.000 0.00 0.00 34.84 3.18
3613 5471 1.893919 GATCCAGGGGCGATAGAGGC 61.894 65.000 0.00 0.00 39.76 4.70
3619 5477 2.919043 GTTGGATCCAGGGGCGAT 59.081 61.111 15.53 0.00 0.00 4.58
3624 5482 1.241315 AAAACGCGTTGGATCCAGGG 61.241 55.000 27.34 14.86 0.00 4.45
3638 5496 1.018910 ACGAGTTCCCAACCAAAACG 58.981 50.000 0.00 0.00 0.00 3.60
3643 5501 0.817634 CAAGCACGAGTTCCCAACCA 60.818 55.000 0.00 0.00 0.00 3.67
3647 5505 2.429930 CCCAAGCACGAGTTCCCA 59.570 61.111 0.00 0.00 0.00 4.37
3689 5547 1.295423 CACTCCCCCTTGTACGGTG 59.705 63.158 0.00 0.00 0.00 4.94
3699 5557 1.229400 TCCACCACTACACTCCCCC 60.229 63.158 0.00 0.00 0.00 5.40
3704 5562 1.481056 GGGCACTCCACCACTACACT 61.481 60.000 0.00 0.00 35.00 3.55
3709 5572 0.905337 GACTAGGGCACTCCACCACT 60.905 60.000 0.00 0.00 38.24 4.00
3936 6522 2.512885 CATTTGCTGCTTACTTGAGCG 58.487 47.619 0.00 0.00 45.64 5.03
3977 6564 0.468214 CTACAGGAGATCTCGCCCCA 60.468 60.000 16.46 0.16 36.39 4.96
3986 6573 3.326946 AGGAGCATGACTACAGGAGAT 57.673 47.619 0.00 0.00 0.00 2.75
4126 7115 1.664321 CTCCCGGTCGTCCCAACTAG 61.664 65.000 0.00 0.00 0.00 2.57
4128 7117 2.995574 CTCCCGGTCGTCCCAACT 60.996 66.667 0.00 0.00 0.00 3.16
4214 7403 2.935481 CCTCTCCCCAAGCCACCA 60.935 66.667 0.00 0.00 0.00 4.17
4276 7478 3.974719 TGCCTACCTGGATAATTTGCAA 58.025 40.909 0.00 0.00 38.35 4.08
4277 7479 3.660970 TGCCTACCTGGATAATTTGCA 57.339 42.857 0.00 0.00 38.35 4.08
4328 7530 1.895798 TGAAGACAGCGAATCTGACCT 59.104 47.619 0.00 0.00 45.72 3.85
4411 7614 3.769739 ACCACATTTGAGCTAGACACA 57.230 42.857 0.00 0.00 0.00 3.72
4412 7615 5.419542 TGATACCACATTTGAGCTAGACAC 58.580 41.667 0.00 0.00 0.00 3.67
4413 7616 5.675684 TGATACCACATTTGAGCTAGACA 57.324 39.130 0.00 0.00 0.00 3.41
4414 7617 6.109359 ACTTGATACCACATTTGAGCTAGAC 58.891 40.000 0.00 0.00 0.00 2.59
4415 7618 6.299805 ACTTGATACCACATTTGAGCTAGA 57.700 37.500 0.00 0.00 0.00 2.43
4445 7648 2.723273 ACCACCACATTTAAGGCTAGC 58.277 47.619 6.04 6.04 0.00 3.42
4579 7783 5.996644 ACCCAAATGATTGACTATCCGTTA 58.003 37.500 0.00 0.00 38.94 3.18
4580 7784 4.855340 ACCCAAATGATTGACTATCCGTT 58.145 39.130 0.00 0.00 38.94 4.44
4583 7787 8.237811 ACATTAACCCAAATGATTGACTATCC 57.762 34.615 3.73 0.00 38.84 2.59
4631 7858 1.299165 CCGATCGATCACACGGACC 60.299 63.158 24.40 0.00 46.94 4.46
4691 7918 2.791927 CGATCCTCAGTCGCGTCA 59.208 61.111 5.77 0.00 31.85 4.35
4880 8107 1.141234 GGGAAGAAGCCGTAGTCCG 59.859 63.158 0.00 0.00 0.00 4.79
5049 8276 0.831307 GGTACTGCGAGGGGAATCTT 59.169 55.000 0.00 0.00 0.00 2.40
5146 8373 3.912907 GGCGATGACGGGGTCGAT 61.913 66.667 9.30 0.00 40.11 3.59
5311 8538 4.900704 CCCATCCCATGCACCGGG 62.901 72.222 15.73 15.73 46.03 5.73
5488 8715 3.118112 TCCTCTGCTCCTGATTTTCATCC 60.118 47.826 0.00 0.00 0.00 3.51
5502 8729 1.137697 TGGCATGATCATCCTCTGCT 58.862 50.000 15.75 0.00 33.43 4.24
5510 8737 2.442126 AGACATGGAGTGGCATGATCAT 59.558 45.455 1.18 1.18 38.81 2.45
5528 8755 9.654663 AAATTGTTACCTAATGTCACTAGAGAC 57.345 33.333 12.84 12.84 38.99 3.36
5546 8773 9.627123 CCATCCTCCAACTAGAATAAATTGTTA 57.373 33.333 0.00 0.00 0.00 2.41
5588 8815 9.444600 AAACAGAGTCTAGAAAACTTACACAAA 57.555 29.630 0.00 0.00 0.00 2.83
5595 8822 9.110502 CAAGGTAAAACAGAGTCTAGAAAACTT 57.889 33.333 0.00 0.00 0.00 2.66
5597 8824 8.434733 ACAAGGTAAAACAGAGTCTAGAAAAC 57.565 34.615 0.00 0.00 0.00 2.43
5710 8937 3.623060 TCAATTCTAGTCGCCTTGAATGC 59.377 43.478 3.99 0.00 40.67 3.56
5711 8938 5.998454 ATCAATTCTAGTCGCCTTGAATG 57.002 39.130 3.99 0.32 40.67 2.67
5712 8939 6.201044 CGTAATCAATTCTAGTCGCCTTGAAT 59.799 38.462 0.00 0.00 42.48 2.57
5713 8940 5.518847 CGTAATCAATTCTAGTCGCCTTGAA 59.481 40.000 0.00 0.00 36.97 2.69
5714 8941 5.041287 CGTAATCAATTCTAGTCGCCTTGA 58.959 41.667 0.00 0.00 0.00 3.02
5715 8942 5.041287 TCGTAATCAATTCTAGTCGCCTTG 58.959 41.667 0.00 0.00 0.00 3.61
5716 8943 5.258456 TCGTAATCAATTCTAGTCGCCTT 57.742 39.130 0.00 0.00 0.00 4.35
5717 8944 4.793353 GCTCGTAATCAATTCTAGTCGCCT 60.793 45.833 0.00 0.00 0.00 5.52
5718 8945 3.425858 GCTCGTAATCAATTCTAGTCGCC 59.574 47.826 0.00 0.00 0.00 5.54
5719 8946 4.042398 TGCTCGTAATCAATTCTAGTCGC 58.958 43.478 0.00 0.00 0.00 5.19
5720 8947 5.172232 CAGTGCTCGTAATCAATTCTAGTCG 59.828 44.000 0.00 0.00 0.00 4.18
5721 8948 6.266323 TCAGTGCTCGTAATCAATTCTAGTC 58.734 40.000 0.00 0.00 0.00 2.59
5722 8949 6.208988 TCAGTGCTCGTAATCAATTCTAGT 57.791 37.500 0.00 0.00 0.00 2.57
5723 8950 8.803201 TTATCAGTGCTCGTAATCAATTCTAG 57.197 34.615 0.00 0.00 0.00 2.43
5724 8951 9.764363 ATTTATCAGTGCTCGTAATCAATTCTA 57.236 29.630 0.00 0.00 0.00 2.10
5725 8952 8.668510 ATTTATCAGTGCTCGTAATCAATTCT 57.331 30.769 0.00 0.00 0.00 2.40
5741 8968 9.927668 CCACCAAAGTTCAATTTATTTATCAGT 57.072 29.630 0.00 0.00 0.00 3.41
5742 8969 8.872845 GCCACCAAAGTTCAATTTATTTATCAG 58.127 33.333 0.00 0.00 0.00 2.90
5798 9025 4.270325 GGTTTAGAGTCCGAATTTCCATCG 59.730 45.833 0.00 0.00 39.92 3.84
5799 9026 5.429130 AGGTTTAGAGTCCGAATTTCCATC 58.571 41.667 0.00 0.00 0.00 3.51
5800 9027 5.437191 AGGTTTAGAGTCCGAATTTCCAT 57.563 39.130 0.00 0.00 0.00 3.41
5801 9028 4.903045 AGGTTTAGAGTCCGAATTTCCA 57.097 40.909 0.00 0.00 0.00 3.53
5802 9029 5.293814 GCTTAGGTTTAGAGTCCGAATTTCC 59.706 44.000 0.00 0.00 0.00 3.13
5805 9032 5.416271 TGCTTAGGTTTAGAGTCCGAATT 57.584 39.130 0.00 0.00 0.00 2.17
5871 9102 6.371809 TTTAGCAGTTCAAATTCGAACAGT 57.628 33.333 11.68 0.00 46.32 3.55
5873 9104 5.679355 CGTTTTAGCAGTTCAAATTCGAACA 59.321 36.000 11.68 0.00 46.32 3.18
5877 9108 5.440685 AGACGTTTTAGCAGTTCAAATTCG 58.559 37.500 0.00 0.00 0.00 3.34
5878 9109 8.776680 TTAAGACGTTTTAGCAGTTCAAATTC 57.223 30.769 0.00 0.00 0.00 2.17
5879 9110 9.744468 ATTTAAGACGTTTTAGCAGTTCAAATT 57.256 25.926 0.00 0.00 0.00 1.82
5880 9111 9.744468 AATTTAAGACGTTTTAGCAGTTCAAAT 57.256 25.926 0.00 0.00 0.00 2.32
5881 9112 9.575783 AAATTTAAGACGTTTTAGCAGTTCAAA 57.424 25.926 0.00 0.00 0.00 2.69
5947 9198 3.881220 AGTCGGTTCTTCAAAACAAGGA 58.119 40.909 0.00 0.00 0.00 3.36
6035 9286 0.678366 ATCCGTCTGTCGAGAGTGCT 60.678 55.000 9.68 0.00 42.86 4.40
6051 9302 5.578776 GGTATCACGGTGAAAATTCAATCC 58.421 41.667 15.72 4.06 39.21 3.01
6055 9306 3.680937 GTCGGTATCACGGTGAAAATTCA 59.319 43.478 15.72 0.00 34.20 2.57
6074 9325 1.656652 GACCTCACATCCAATGGTCG 58.343 55.000 0.00 0.00 37.93 4.79
6075 9326 1.207089 TCGACCTCACATCCAATGGTC 59.793 52.381 0.00 0.00 42.53 4.02
6086 9337 3.385577 GCCTAGATCAAATCGACCTCAC 58.614 50.000 0.00 0.00 0.00 3.51
6100 9351 6.091555 TGGGTAAAGATCTAATGGCCTAGAT 58.908 40.000 13.06 13.06 40.60 1.98
6109 9360 5.746990 AGCGCTATGGGTAAAGATCTAAT 57.253 39.130 8.99 0.00 0.00 1.73
6110 9361 6.436218 TGATAGCGCTATGGGTAAAGATCTAA 59.564 38.462 33.54 0.06 0.00 2.10
6111 9362 5.949952 TGATAGCGCTATGGGTAAAGATCTA 59.050 40.000 33.54 0.51 0.00 1.98
6112 9363 4.772624 TGATAGCGCTATGGGTAAAGATCT 59.227 41.667 33.54 6.33 0.00 2.75
6113 9364 5.073311 TGATAGCGCTATGGGTAAAGATC 57.927 43.478 33.54 17.37 0.00 2.75
6114 9365 4.621747 GCTGATAGCGCTATGGGTAAAGAT 60.622 45.833 33.54 8.28 0.00 2.40
6115 9366 3.306088 GCTGATAGCGCTATGGGTAAAGA 60.306 47.826 33.54 2.65 0.00 2.52
6116 9367 2.996621 GCTGATAGCGCTATGGGTAAAG 59.003 50.000 33.54 19.43 0.00 1.85
6117 9368 2.289444 GGCTGATAGCGCTATGGGTAAA 60.289 50.000 33.54 4.39 43.62 2.01
6118 9369 1.275291 GGCTGATAGCGCTATGGGTAA 59.725 52.381 33.54 12.75 43.62 2.85
6119 9370 0.895530 GGCTGATAGCGCTATGGGTA 59.104 55.000 33.54 15.58 43.62 3.69
6120 9371 1.674057 GGCTGATAGCGCTATGGGT 59.326 57.895 33.54 11.70 43.62 4.51
6121 9372 1.446792 CGGCTGATAGCGCTATGGG 60.447 63.158 33.54 23.92 43.62 4.00
6122 9373 0.734253 GACGGCTGATAGCGCTATGG 60.734 60.000 33.54 24.24 43.62 2.74
6123 9374 0.242286 AGACGGCTGATAGCGCTATG 59.758 55.000 33.54 20.80 43.62 2.23
6124 9375 0.242286 CAGACGGCTGATAGCGCTAT 59.758 55.000 29.38 29.38 45.17 2.97
6125 9376 0.818040 TCAGACGGCTGATAGCGCTA 60.818 55.000 19.45 21.30 45.88 4.26
6126 9377 2.121538 TCAGACGGCTGATAGCGCT 61.122 57.895 19.45 17.26 45.88 5.92
6127 9378 2.413351 TCAGACGGCTGATAGCGC 59.587 61.111 19.45 0.00 45.88 5.92
6155 9406 7.309990 GGCATGTATATTACAAAGGGATGCAAT 60.310 37.037 0.00 0.00 42.76 3.56
6172 9423 2.550787 CCTGGTGGGGGCATGTATA 58.449 57.895 0.00 0.00 0.00 1.47
6185 9436 1.648116 ATTGAGCAAATTGCCCTGGT 58.352 45.000 15.04 0.00 46.52 4.00
6187 9438 2.027929 TGGAATTGAGCAAATTGCCCTG 60.028 45.455 15.04 0.00 46.52 4.45
6190 9441 6.161381 CCTATATGGAATTGAGCAAATTGCC 58.839 40.000 15.04 6.91 43.84 4.52
6203 9454 9.413734 GCCTTATTTTCTATGCCTATATGGAAT 57.586 33.333 0.00 0.00 37.90 3.01
6215 9466 5.300286 CAGGGGAGTTGCCTTATTTTCTATG 59.700 44.000 0.00 0.00 36.66 2.23
6216 9467 5.449553 CAGGGGAGTTGCCTTATTTTCTAT 58.550 41.667 0.00 0.00 36.66 1.98
6219 9470 2.760650 CCAGGGGAGTTGCCTTATTTTC 59.239 50.000 0.00 0.00 36.66 2.29
6221 9472 1.716503 ACCAGGGGAGTTGCCTTATTT 59.283 47.619 0.00 0.00 36.66 1.40
6254 9505 5.685728 AGAACCTACATTTATGAAGGAGGC 58.314 41.667 0.00 0.00 0.00 4.70
6261 9512 8.146053 TCAAAGGAGAGAACCTACATTTATGA 57.854 34.615 0.00 0.00 39.62 2.15


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.