Multiple sequence alignment - TraesCS4A01G149600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G149600 chr4A 100.000 3485 0 0 1 3485 288079756 288083240 0.000000e+00 6436.0
1 TraesCS4A01G149600 chr2A 97.632 3294 62 12 1 3284 240354327 240351040 0.000000e+00 5637.0
2 TraesCS4A01G149600 chr2A 97.334 3038 72 8 254 3287 335234179 335237211 0.000000e+00 5153.0
3 TraesCS4A01G149600 chr7A 97.143 3290 81 9 1 3284 234288702 234285420 0.000000e+00 5542.0
4 TraesCS4A01G149600 chr7A 96.568 3293 93 15 1 3284 361188208 361191489 0.000000e+00 5437.0
5 TraesCS4A01G149600 chr7A 97.921 3078 55 7 211 3284 361606603 361603531 0.000000e+00 5321.0
6 TraesCS4A01G149600 chr7A 94.924 197 5 2 1 197 361607707 361607516 1.570000e-78 303.0
7 TraesCS4A01G149600 chr5A 96.092 3301 101 23 1 3282 262937023 262940314 0.000000e+00 5356.0
8 TraesCS4A01G149600 chr3A 95.727 3300 116 17 1 3285 314388725 314392014 0.000000e+00 5289.0
9 TraesCS4A01G149600 chr3A 96.691 2962 82 12 331 3284 314102733 314099780 0.000000e+00 4913.0
10 TraesCS4A01G149600 chr6A 97.032 2830 74 8 460 3284 360527171 360524347 0.000000e+00 4752.0
11 TraesCS4A01G149600 chr6A 89.823 226 8 7 1 219 284109073 284108856 3.430000e-70 276.0
12 TraesCS4A01G149600 chr6A 98.630 146 2 0 1 146 360527312 360527167 3.450000e-65 259.0
13 TraesCS4A01G149600 chr6A 93.750 96 5 1 140 234 284318618 284318713 3.630000e-30 143.0
14 TraesCS4A01G149600 chr6A 92.784 97 5 1 140 234 284336370 284336466 4.690000e-29 139.0
15 TraesCS4A01G149600 chr7D 97.044 203 6 0 3283 3485 144206707 144206909 3.330000e-90 342.0
16 TraesCS4A01G149600 chr6D 96.552 203 7 0 3283 3485 190916883 190917085 1.550000e-88 337.0
17 TraesCS4A01G149600 chr6D 96.552 203 7 0 3283 3485 356990910 356991112 1.550000e-88 337.0
18 TraesCS4A01G149600 chr6D 96.059 203 8 0 3283 3485 288936291 288936089 7.210000e-87 331.0
19 TraesCS4A01G149600 chr6D 95.631 206 9 0 3280 3485 394680566 394680771 7.210000e-87 331.0
20 TraesCS4A01G149600 chr3D 96.552 203 7 0 3283 3485 254431867 254431665 1.550000e-88 337.0
21 TraesCS4A01G149600 chr2D 96.552 203 7 0 3283 3485 153751307 153751509 1.550000e-88 337.0
22 TraesCS4A01G149600 chr2D 96.552 203 7 0 3283 3485 574066562 574066764 1.550000e-88 337.0
23 TraesCS4A01G149600 chr1D 96.552 203 7 0 3283 3485 194882131 194882333 1.550000e-88 337.0
24 TraesCS4A01G149600 chr4D 90.751 173 7 7 69 234 209675857 209675687 4.530000e-54 222.0
25 TraesCS4A01G149600 chr4D 95.420 131 5 1 246 375 209675641 209675511 1.270000e-49 207.0
26 TraesCS4A01G149600 chrUn 92.517 147 9 2 246 390 118216131 118216277 3.520000e-50 209.0
27 TraesCS4A01G149600 chrUn 89.017 173 9 7 69 234 245195687 245195518 4.560000e-49 206.0
28 TraesCS4A01G149600 chrUn 92.241 116 8 1 1 115 145693820 145693935 2.780000e-36 163.0
29 TraesCS4A01G149600 chr7B 92.241 116 8 1 1 115 248685673 248685788 2.780000e-36 163.0
30 TraesCS4A01G149600 chr1B 90.435 115 10 1 2 115 243832256 243832142 2.170000e-32 150.0
31 TraesCS4A01G149600 chr6B 100.000 30 0 0 48 77 378384007 378384036 4.860000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G149600 chr4A 288079756 288083240 3484 False 6436.0 6436 100.0000 1 3485 1 chr4A.!!$F1 3484
1 TraesCS4A01G149600 chr2A 240351040 240354327 3287 True 5637.0 5637 97.6320 1 3284 1 chr2A.!!$R1 3283
2 TraesCS4A01G149600 chr2A 335234179 335237211 3032 False 5153.0 5153 97.3340 254 3287 1 chr2A.!!$F1 3033
3 TraesCS4A01G149600 chr7A 234285420 234288702 3282 True 5542.0 5542 97.1430 1 3284 1 chr7A.!!$R1 3283
4 TraesCS4A01G149600 chr7A 361188208 361191489 3281 False 5437.0 5437 96.5680 1 3284 1 chr7A.!!$F1 3283
5 TraesCS4A01G149600 chr7A 361603531 361607707 4176 True 2812.0 5321 96.4225 1 3284 2 chr7A.!!$R2 3283
6 TraesCS4A01G149600 chr5A 262937023 262940314 3291 False 5356.0 5356 96.0920 1 3282 1 chr5A.!!$F1 3281
7 TraesCS4A01G149600 chr3A 314388725 314392014 3289 False 5289.0 5289 95.7270 1 3285 1 chr3A.!!$F1 3284
8 TraesCS4A01G149600 chr3A 314099780 314102733 2953 True 4913.0 4913 96.6910 331 3284 1 chr3A.!!$R1 2953
9 TraesCS4A01G149600 chr6A 360524347 360527312 2965 True 2505.5 4752 97.8310 1 3284 2 chr6A.!!$R2 3283

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
820 1742 3.066342 CACCGTCTATCCATACGTTCACT 59.934 47.826 0.0 0.0 37.4 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2771 3697 0.239879 AAATAAGGTGGCGCAACACG 59.76 50.0 18.47 0.0 42.23 4.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
164 172 5.403558 AAAAGGGAAAGAAGGAAGGAAGA 57.596 39.130 0.00 0.00 0.00 2.87
430 1346 4.900635 AGAAGAGCAATCACGTTTGTTT 57.099 36.364 2.19 0.00 0.00 2.83
751 1672 6.207614 TGCACTAATTAATGTGGTTGTAGCAA 59.792 34.615 7.74 0.00 34.99 3.91
820 1742 3.066342 CACCGTCTATCCATACGTTCACT 59.934 47.826 0.00 0.00 37.40 3.41
1032 1954 4.968719 TCTAGAGTCAATCCATGGGCTTTA 59.031 41.667 13.02 0.00 0.00 1.85
1357 2279 2.035530 TGCCATGCGACATACATTCA 57.964 45.000 0.00 0.00 0.00 2.57
1639 2563 3.957497 TGTTGCCCACAAGATAAACAAGT 59.043 39.130 0.00 0.00 36.16 3.16
1700 2624 0.614979 ACCACTGCGTCTCCTATGGT 60.615 55.000 0.00 0.00 35.60 3.55
1919 2843 7.345914 ACCAGCTATTTTAGAGGACTATGTTCT 59.654 37.037 0.00 0.00 0.00 3.01
1932 2856 9.436957 GAGGACTATGTTCTTGATTTGACTTTA 57.563 33.333 0.00 0.00 0.00 1.85
2130 3055 4.142116 TGGTTTAATGATGAGCATTGCCAG 60.142 41.667 6.14 0.00 46.38 4.85
2368 3293 2.087501 TCAGATTAAGCAACGCCGAA 57.912 45.000 0.00 0.00 0.00 4.30
2567 3493 8.630054 TGCCTAACTTAGATACATTTGTGTTT 57.370 30.769 0.00 0.00 0.00 2.83
2637 3563 1.071542 TGGTCAAGCACGGAGATGAAA 59.928 47.619 0.00 0.00 0.00 2.69
2841 3767 9.455144 TTTAGAGTCCATATTATAGGGGAAACA 57.545 33.333 2.95 0.00 0.00 2.83
3194 4129 2.179764 TTGCTAAGGCGCAATGTCC 58.820 52.632 10.83 0.00 44.30 4.02
3195 4130 1.312371 TTGCTAAGGCGCAATGTCCC 61.312 55.000 10.83 0.00 44.30 4.46
3212 4147 0.319211 CCCTGCACGTTTGTAGTCGA 60.319 55.000 0.00 0.00 33.77 4.20
3287 4226 2.897969 GGACCCTCGCCTCTATCATTAA 59.102 50.000 0.00 0.00 0.00 1.40
3288 4227 3.515901 GGACCCTCGCCTCTATCATTAAT 59.484 47.826 0.00 0.00 0.00 1.40
3289 4228 4.499183 GACCCTCGCCTCTATCATTAATG 58.501 47.826 9.29 9.29 0.00 1.90
3290 4229 3.261897 ACCCTCGCCTCTATCATTAATGG 59.738 47.826 15.36 0.00 0.00 3.16
3291 4230 3.265791 CCTCGCCTCTATCATTAATGGC 58.734 50.000 15.36 8.68 37.24 4.40
3292 4231 3.055530 CCTCGCCTCTATCATTAATGGCT 60.056 47.826 15.36 6.20 38.33 4.75
3293 4232 4.160439 CCTCGCCTCTATCATTAATGGCTA 59.840 45.833 15.36 6.98 38.33 3.93
3294 4233 5.163364 CCTCGCCTCTATCATTAATGGCTAT 60.163 44.000 15.36 4.67 38.33 2.97
3295 4234 5.664457 TCGCCTCTATCATTAATGGCTATG 58.336 41.667 15.36 4.14 38.33 2.23
3296 4235 4.813161 CGCCTCTATCATTAATGGCTATGG 59.187 45.833 15.36 12.71 38.33 2.74
3297 4236 4.578105 GCCTCTATCATTAATGGCTATGGC 59.422 45.833 15.36 17.58 37.58 4.40
3298 4237 5.631009 GCCTCTATCATTAATGGCTATGGCT 60.631 44.000 22.88 0.00 37.58 4.75
3299 4238 5.821470 CCTCTATCATTAATGGCTATGGCTG 59.179 44.000 15.36 0.00 38.73 4.85
3300 4239 5.188434 TCTATCATTAATGGCTATGGCTGC 58.812 41.667 15.36 0.00 38.73 5.25
3301 4240 3.513909 TCATTAATGGCTATGGCTGCT 57.486 42.857 15.36 0.00 38.73 4.24
3302 4241 3.836146 TCATTAATGGCTATGGCTGCTT 58.164 40.909 15.36 0.00 38.73 3.91
3303 4242 3.822735 TCATTAATGGCTATGGCTGCTTC 59.177 43.478 15.36 0.00 38.73 3.86
3304 4243 1.882912 TAATGGCTATGGCTGCTTCG 58.117 50.000 0.00 0.00 38.73 3.79
3305 4244 0.107017 AATGGCTATGGCTGCTTCGT 60.107 50.000 0.00 0.00 38.73 3.85
3306 4245 0.816825 ATGGCTATGGCTGCTTCGTG 60.817 55.000 0.00 0.00 38.73 4.35
3307 4246 1.450312 GGCTATGGCTGCTTCGTGT 60.450 57.895 0.00 0.00 38.73 4.49
3308 4247 1.026718 GGCTATGGCTGCTTCGTGTT 61.027 55.000 0.00 0.00 38.73 3.32
3309 4248 0.375106 GCTATGGCTGCTTCGTGTTC 59.625 55.000 0.00 0.00 35.22 3.18
3310 4249 0.647410 CTATGGCTGCTTCGTGTTCG 59.353 55.000 0.00 0.00 38.55 3.95
3311 4250 0.245266 TATGGCTGCTTCGTGTTCGA 59.755 50.000 0.00 0.00 44.66 3.71
3312 4251 1.016130 ATGGCTGCTTCGTGTTCGAG 61.016 55.000 0.00 0.00 46.81 4.04
3313 4252 1.372997 GGCTGCTTCGTGTTCGAGA 60.373 57.895 0.00 0.00 46.81 4.04
3314 4253 0.944311 GGCTGCTTCGTGTTCGAGAA 60.944 55.000 0.00 0.00 46.81 2.87
3315 4254 0.859232 GCTGCTTCGTGTTCGAGAAA 59.141 50.000 0.00 0.00 46.81 2.52
3316 4255 1.136502 GCTGCTTCGTGTTCGAGAAAG 60.137 52.381 0.00 0.00 46.81 2.62
3317 4256 2.394708 CTGCTTCGTGTTCGAGAAAGA 58.605 47.619 0.00 0.00 46.81 2.52
3318 4257 2.989840 CTGCTTCGTGTTCGAGAAAGAT 59.010 45.455 0.00 0.00 46.81 2.40
3319 4258 2.731451 TGCTTCGTGTTCGAGAAAGATG 59.269 45.455 0.00 0.00 46.81 2.90
3320 4259 2.473049 GCTTCGTGTTCGAGAAAGATGC 60.473 50.000 7.19 7.19 46.81 3.91
3321 4260 1.710013 TCGTGTTCGAGAAAGATGCC 58.290 50.000 0.00 0.00 41.35 4.40
3322 4261 1.000394 TCGTGTTCGAGAAAGATGCCA 60.000 47.619 0.00 0.00 41.35 4.92
3323 4262 1.391485 CGTGTTCGAGAAAGATGCCAG 59.609 52.381 0.00 0.00 39.71 4.85
3324 4263 1.129437 GTGTTCGAGAAAGATGCCAGC 59.871 52.381 0.00 0.00 0.00 4.85
3325 4264 1.270785 TGTTCGAGAAAGATGCCAGCA 60.271 47.619 0.00 0.00 0.00 4.41
3326 4265 1.129437 GTTCGAGAAAGATGCCAGCAC 59.871 52.381 0.00 0.00 0.00 4.40
3327 4266 0.391661 TCGAGAAAGATGCCAGCACC 60.392 55.000 0.00 0.00 0.00 5.01
3328 4267 0.674581 CGAGAAAGATGCCAGCACCA 60.675 55.000 0.00 0.00 0.00 4.17
3329 4268 1.760192 GAGAAAGATGCCAGCACCAT 58.240 50.000 0.00 0.00 0.00 3.55
3330 4269 2.097825 GAGAAAGATGCCAGCACCATT 58.902 47.619 0.00 0.00 0.00 3.16
3331 4270 1.822990 AGAAAGATGCCAGCACCATTG 59.177 47.619 0.00 0.00 0.00 2.82
3332 4271 0.899720 AAAGATGCCAGCACCATTGG 59.100 50.000 0.00 0.00 38.78 3.16
3333 4272 0.974010 AAGATGCCAGCACCATTGGG 60.974 55.000 7.78 0.00 36.19 4.12
3334 4273 3.078836 ATGCCAGCACCATTGGGC 61.079 61.111 7.78 7.79 46.58 5.36
3337 4276 3.072468 CCAGCACCATTGGGCCAG 61.072 66.667 6.23 0.00 37.90 4.85
3338 4277 3.072468 CAGCACCATTGGGCCAGG 61.072 66.667 6.23 8.51 37.90 4.45
3339 4278 3.593680 AGCACCATTGGGCCAGGT 61.594 61.111 11.52 11.52 37.90 4.00
3341 4280 2.118076 CACCATTGGGCCAGGTGT 59.882 61.111 28.30 15.33 45.95 4.16
3342 4281 1.382240 CACCATTGGGCCAGGTGTA 59.618 57.895 28.30 7.04 45.95 2.90
3343 4282 0.033208 CACCATTGGGCCAGGTGTAT 60.033 55.000 28.30 9.09 45.95 2.29
3344 4283 0.709992 ACCATTGGGCCAGGTGTATT 59.290 50.000 16.14 0.03 37.90 1.89
3345 4284 1.341976 ACCATTGGGCCAGGTGTATTC 60.342 52.381 16.14 0.00 37.90 1.75
3346 4285 1.341877 CCATTGGGCCAGGTGTATTCA 60.342 52.381 6.23 0.00 0.00 2.57
3347 4286 2.455557 CATTGGGCCAGGTGTATTCAA 58.544 47.619 6.23 0.00 0.00 2.69
3348 4287 1.917872 TTGGGCCAGGTGTATTCAAC 58.082 50.000 6.23 0.00 0.00 3.18
3349 4288 1.072266 TGGGCCAGGTGTATTCAACT 58.928 50.000 0.00 0.00 43.06 3.16
3355 4294 2.789409 AGGTGTATTCAACTGGAGGC 57.211 50.000 0.00 0.00 40.46 4.70
3356 4295 1.066143 AGGTGTATTCAACTGGAGGCG 60.066 52.381 0.00 0.00 40.46 5.52
3357 4296 1.369625 GTGTATTCAACTGGAGGCGG 58.630 55.000 0.00 0.00 0.00 6.13
3358 4297 0.251916 TGTATTCAACTGGAGGCGGG 59.748 55.000 0.00 0.00 0.00 6.13
3359 4298 0.252197 GTATTCAACTGGAGGCGGGT 59.748 55.000 0.00 0.00 0.00 5.28
3360 4299 0.988832 TATTCAACTGGAGGCGGGTT 59.011 50.000 0.00 0.00 0.00 4.11
3361 4300 0.112412 ATTCAACTGGAGGCGGGTTT 59.888 50.000 0.00 0.00 0.00 3.27
3362 4301 0.766131 TTCAACTGGAGGCGGGTTTA 59.234 50.000 0.00 0.00 0.00 2.01
3363 4302 0.035739 TCAACTGGAGGCGGGTTTAC 59.964 55.000 0.00 0.00 0.00 2.01
3364 4303 0.250553 CAACTGGAGGCGGGTTTACA 60.251 55.000 0.00 0.00 0.00 2.41
3365 4304 0.036306 AACTGGAGGCGGGTTTACAG 59.964 55.000 0.00 0.00 0.00 2.74
3366 4305 1.745489 CTGGAGGCGGGTTTACAGC 60.745 63.158 0.00 0.00 0.00 4.40
3370 4309 2.818274 GGCGGGTTTACAGCCTCG 60.818 66.667 10.19 0.00 46.83 4.63
3371 4310 2.818274 GCGGGTTTACAGCCTCGG 60.818 66.667 0.00 0.00 38.58 4.63
3372 4311 2.818274 CGGGTTTACAGCCTCGGC 60.818 66.667 0.00 0.00 38.58 5.54
3373 4312 2.349755 GGGTTTACAGCCTCGGCA 59.650 61.111 11.02 0.00 44.88 5.69
3374 4313 1.302993 GGGTTTACAGCCTCGGCAA 60.303 57.895 11.02 0.00 44.88 4.52
3375 4314 1.583495 GGGTTTACAGCCTCGGCAAC 61.583 60.000 11.02 5.59 44.88 4.17
3376 4315 1.583495 GGTTTACAGCCTCGGCAACC 61.583 60.000 11.02 10.92 44.88 3.77
3377 4316 0.887387 GTTTACAGCCTCGGCAACCA 60.887 55.000 11.02 0.00 44.88 3.67
3378 4317 0.887387 TTTACAGCCTCGGCAACCAC 60.887 55.000 11.02 0.00 44.88 4.16
3379 4318 1.764571 TTACAGCCTCGGCAACCACT 61.765 55.000 11.02 0.00 44.88 4.00
3380 4319 2.167398 TACAGCCTCGGCAACCACTC 62.167 60.000 11.02 0.00 44.88 3.51
3381 4320 4.021925 AGCCTCGGCAACCACTCC 62.022 66.667 11.02 0.00 44.88 3.85
3382 4321 4.329545 GCCTCGGCAACCACTCCA 62.330 66.667 2.41 0.00 41.49 3.86
3383 4322 2.671070 CCTCGGCAACCACTCCAT 59.329 61.111 0.00 0.00 0.00 3.41
3384 4323 1.746615 CCTCGGCAACCACTCCATG 60.747 63.158 0.00 0.00 0.00 3.66
3385 4324 1.003355 CTCGGCAACCACTCCATGT 60.003 57.895 0.00 0.00 0.00 3.21
3386 4325 0.606401 CTCGGCAACCACTCCATGTT 60.606 55.000 0.00 0.00 0.00 2.71
3387 4326 0.605319 TCGGCAACCACTCCATGTTC 60.605 55.000 0.00 0.00 0.00 3.18
3388 4327 1.586154 CGGCAACCACTCCATGTTCC 61.586 60.000 0.00 0.00 0.00 3.62
3389 4328 0.251341 GGCAACCACTCCATGTTCCT 60.251 55.000 0.00 0.00 0.00 3.36
3390 4329 1.168714 GCAACCACTCCATGTTCCTC 58.831 55.000 0.00 0.00 0.00 3.71
3391 4330 1.442769 CAACCACTCCATGTTCCTCG 58.557 55.000 0.00 0.00 0.00 4.63
3392 4331 0.324943 AACCACTCCATGTTCCTCGG 59.675 55.000 0.00 0.00 0.00 4.63
3393 4332 1.221840 CCACTCCATGTTCCTCGGG 59.778 63.158 0.00 0.00 0.00 5.14
3394 4333 1.450312 CACTCCATGTTCCTCGGGC 60.450 63.158 0.00 0.00 0.00 6.13
3395 4334 1.613630 ACTCCATGTTCCTCGGGCT 60.614 57.895 0.00 0.00 0.00 5.19
3396 4335 1.144936 CTCCATGTTCCTCGGGCTC 59.855 63.158 0.00 0.00 0.00 4.70
3397 4336 1.612146 TCCATGTTCCTCGGGCTCA 60.612 57.895 0.00 0.00 0.00 4.26
3398 4337 1.198094 TCCATGTTCCTCGGGCTCAA 61.198 55.000 0.00 0.00 0.00 3.02
3399 4338 0.107017 CCATGTTCCTCGGGCTCAAT 60.107 55.000 0.00 0.00 0.00 2.57
3400 4339 1.683011 CCATGTTCCTCGGGCTCAATT 60.683 52.381 0.00 0.00 0.00 2.32
3401 4340 2.421388 CCATGTTCCTCGGGCTCAATTA 60.421 50.000 0.00 0.00 0.00 1.40
3402 4341 3.480470 CATGTTCCTCGGGCTCAATTAT 58.520 45.455 0.00 0.00 0.00 1.28
3403 4342 3.194005 TGTTCCTCGGGCTCAATTATC 57.806 47.619 0.00 0.00 0.00 1.75
3404 4343 2.158813 TGTTCCTCGGGCTCAATTATCC 60.159 50.000 0.00 0.00 0.00 2.59
3405 4344 0.679505 TCCTCGGGCTCAATTATCCG 59.320 55.000 0.00 0.00 43.42 4.18
3408 4347 2.455674 TCGGGCTCAATTATCCGATG 57.544 50.000 0.00 0.00 45.37 3.84
3409 4348 1.967779 TCGGGCTCAATTATCCGATGA 59.032 47.619 0.00 0.00 45.37 2.92
3410 4349 2.567169 TCGGGCTCAATTATCCGATGAT 59.433 45.455 0.00 0.00 45.37 2.45
3411 4350 2.932614 CGGGCTCAATTATCCGATGATC 59.067 50.000 0.00 0.00 44.69 2.92
3412 4351 3.274288 GGGCTCAATTATCCGATGATCC 58.726 50.000 0.00 0.00 32.18 3.36
3413 4352 3.307691 GGGCTCAATTATCCGATGATCCA 60.308 47.826 0.00 0.00 32.35 3.41
3414 4353 4.326826 GGCTCAATTATCCGATGATCCAA 58.673 43.478 0.00 0.00 31.34 3.53
3415 4354 4.154918 GGCTCAATTATCCGATGATCCAAC 59.845 45.833 0.00 0.00 31.34 3.77
3416 4355 4.154918 GCTCAATTATCCGATGATCCAACC 59.845 45.833 0.00 0.00 32.18 3.77
3417 4356 5.303259 TCAATTATCCGATGATCCAACCA 57.697 39.130 0.00 0.00 32.18 3.67
3418 4357 5.689835 TCAATTATCCGATGATCCAACCAA 58.310 37.500 0.00 0.00 32.18 3.67
3419 4358 6.306199 TCAATTATCCGATGATCCAACCAAT 58.694 36.000 0.00 0.00 32.18 3.16
3420 4359 6.430925 TCAATTATCCGATGATCCAACCAATC 59.569 38.462 0.00 0.00 32.18 2.67
3421 4360 3.862877 ATCCGATGATCCAACCAATCA 57.137 42.857 0.00 0.00 37.53 2.57
3422 4361 3.862877 TCCGATGATCCAACCAATCAT 57.137 42.857 0.00 0.00 44.52 2.45
3427 4366 5.542616 GATGATCCAACCAATCATCGATC 57.457 43.478 9.58 0.00 45.59 3.69
3428 4367 4.420522 TGATCCAACCAATCATCGATCA 57.579 40.909 0.00 0.00 35.08 2.92
3429 4368 4.976864 TGATCCAACCAATCATCGATCAT 58.023 39.130 0.00 0.00 33.12 2.45
3430 4369 6.112927 TGATCCAACCAATCATCGATCATA 57.887 37.500 0.00 0.00 33.12 2.15
3431 4370 6.714278 TGATCCAACCAATCATCGATCATAT 58.286 36.000 0.00 0.00 33.12 1.78
3432 4371 6.820152 TGATCCAACCAATCATCGATCATATC 59.180 38.462 0.00 0.00 33.12 1.63
3433 4372 6.112927 TCCAACCAATCATCGATCATATCA 57.887 37.500 0.00 0.00 0.00 2.15
3434 4373 5.934043 TCCAACCAATCATCGATCATATCAC 59.066 40.000 0.00 0.00 0.00 3.06
3435 4374 5.122869 CCAACCAATCATCGATCATATCACC 59.877 44.000 0.00 0.00 0.00 4.02
3436 4375 4.498241 ACCAATCATCGATCATATCACCG 58.502 43.478 0.00 0.00 0.00 4.94
3437 4376 3.867493 CCAATCATCGATCATATCACCGG 59.133 47.826 0.00 0.00 0.00 5.28
3438 4377 2.654749 TCATCGATCATATCACCGGC 57.345 50.000 0.00 0.00 0.00 6.13
3439 4378 1.135402 TCATCGATCATATCACCGGCG 60.135 52.381 0.00 0.00 0.00 6.46
3440 4379 1.135402 CATCGATCATATCACCGGCGA 60.135 52.381 9.30 0.00 0.00 5.54
3441 4380 1.173913 TCGATCATATCACCGGCGAT 58.826 50.000 9.30 10.35 0.00 4.58
3442 4381 1.135402 TCGATCATATCACCGGCGATG 60.135 52.381 15.31 0.00 0.00 3.84
3443 4382 1.135402 CGATCATATCACCGGCGATGA 60.135 52.381 15.31 6.33 33.09 2.92
3444 4383 2.480244 CGATCATATCACCGGCGATGAT 60.480 50.000 22.09 22.09 40.80 2.45
3445 4384 3.525537 GATCATATCACCGGCGATGATT 58.474 45.455 23.69 3.53 38.76 2.57
3446 4385 4.682787 GATCATATCACCGGCGATGATTA 58.317 43.478 23.69 9.03 38.76 1.75
3447 4386 3.845178 TCATATCACCGGCGATGATTAC 58.155 45.455 23.69 0.00 37.89 1.89
3448 4387 2.736144 TATCACCGGCGATGATTACC 57.264 50.000 23.69 0.00 37.89 2.85
3449 4388 0.319555 ATCACCGGCGATGATTACCG 60.320 55.000 11.85 0.65 46.50 4.02
3450 4389 1.227147 CACCGGCGATGATTACCGT 60.227 57.895 9.30 0.00 45.49 4.83
3451 4390 1.227147 ACCGGCGATGATTACCGTG 60.227 57.895 9.30 0.00 45.49 4.94
3452 4391 2.594962 CCGGCGATGATTACCGTGC 61.595 63.158 9.30 0.00 45.49 5.34
3453 4392 1.591594 CGGCGATGATTACCGTGCT 60.592 57.895 0.00 0.00 42.01 4.40
3454 4393 0.318360 CGGCGATGATTACCGTGCTA 60.318 55.000 0.00 0.00 42.01 3.49
3455 4394 1.668919 CGGCGATGATTACCGTGCTAT 60.669 52.381 0.00 0.00 42.01 2.97
3456 4395 1.726791 GGCGATGATTACCGTGCTATG 59.273 52.381 0.00 0.00 0.00 2.23
3457 4396 1.126846 GCGATGATTACCGTGCTATGC 59.873 52.381 0.00 0.00 0.00 3.14
3458 4397 2.403259 CGATGATTACCGTGCTATGCA 58.597 47.619 0.00 0.00 35.60 3.96
3459 4398 2.799978 CGATGATTACCGTGCTATGCAA 59.200 45.455 0.00 0.00 41.47 4.08
3460 4399 3.362986 CGATGATTACCGTGCTATGCAAC 60.363 47.826 0.00 0.00 41.47 4.17
3461 4400 3.260475 TGATTACCGTGCTATGCAACT 57.740 42.857 0.00 0.00 41.47 3.16
3462 4401 3.605634 TGATTACCGTGCTATGCAACTT 58.394 40.909 0.00 0.00 41.47 2.66
3463 4402 3.621268 TGATTACCGTGCTATGCAACTTC 59.379 43.478 0.00 0.00 41.47 3.01
3464 4403 2.018542 TACCGTGCTATGCAACTTCC 57.981 50.000 0.00 0.00 41.47 3.46
3465 4404 0.036164 ACCGTGCTATGCAACTTCCA 59.964 50.000 0.00 0.00 41.47 3.53
3466 4405 1.340017 ACCGTGCTATGCAACTTCCAT 60.340 47.619 0.00 0.00 41.47 3.41
3467 4406 1.745087 CCGTGCTATGCAACTTCCATT 59.255 47.619 0.00 0.00 41.47 3.16
3468 4407 2.223340 CCGTGCTATGCAACTTCCATTC 60.223 50.000 0.00 0.00 41.47 2.67
3469 4408 2.537529 CGTGCTATGCAACTTCCATTCG 60.538 50.000 0.00 0.00 41.47 3.34
3470 4409 1.401552 TGCTATGCAACTTCCATTCGC 59.598 47.619 0.00 0.00 34.76 4.70
3471 4410 1.268743 GCTATGCAACTTCCATTCGCC 60.269 52.381 0.00 0.00 0.00 5.54
3472 4411 2.016318 CTATGCAACTTCCATTCGCCA 58.984 47.619 0.00 0.00 0.00 5.69
3473 4412 1.255882 ATGCAACTTCCATTCGCCAA 58.744 45.000 0.00 0.00 0.00 4.52
3474 4413 0.597568 TGCAACTTCCATTCGCCAAG 59.402 50.000 0.00 0.00 0.00 3.61
3475 4414 0.109132 GCAACTTCCATTCGCCAAGG 60.109 55.000 0.00 0.00 0.00 3.61
3476 4415 0.527565 CAACTTCCATTCGCCAAGGG 59.472 55.000 0.00 0.00 34.49 3.95
3477 4416 0.611896 AACTTCCATTCGCCAAGGGG 60.612 55.000 0.00 0.00 33.94 4.79
3478 4417 1.754234 CTTCCATTCGCCAAGGGGG 60.754 63.158 3.15 0.00 33.94 5.40
3479 4418 2.210144 CTTCCATTCGCCAAGGGGGA 62.210 60.000 3.15 0.00 42.93 4.81
3480 4419 2.440247 CCATTCGCCAAGGGGGAC 60.440 66.667 1.05 0.00 44.28 4.46
3481 4420 2.677228 CATTCGCCAAGGGGGACT 59.323 61.111 1.05 0.00 44.28 3.85
3482 4421 1.750399 CATTCGCCAAGGGGGACTG 60.750 63.158 1.05 3.60 44.28 3.51
3483 4422 2.231380 ATTCGCCAAGGGGGACTGT 61.231 57.895 1.05 0.00 44.28 3.55
3484 4423 2.484287 ATTCGCCAAGGGGGACTGTG 62.484 60.000 1.05 0.00 44.28 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
115 116 2.171659 AGAAAATTGCCCCAAAAACGGT 59.828 40.909 0.00 0.00 0.00 4.83
164 172 0.180406 AGGCACAACTCACGTCCTTT 59.820 50.000 0.00 0.00 0.00 3.11
213 1124 1.676006 CCTTTTCTCGTTGTGTTGGCT 59.324 47.619 0.00 0.00 0.00 4.75
430 1346 7.334921 CCGATAAACAATTTCCAAGTACTACCA 59.665 37.037 0.00 0.00 0.00 3.25
561 1479 4.261801 ACAAGCCAAACGAGCAATACTAT 58.738 39.130 0.00 0.00 0.00 2.12
760 1682 5.070001 GCTGGGTTGGCTTTATATATGTGA 58.930 41.667 0.00 0.00 0.00 3.58
820 1742 1.271102 GTTGGGTAAAGCGATTGCCAA 59.729 47.619 12.84 0.89 44.95 4.52
1032 1954 2.900838 ACGTCTCCCGCGATCGAT 60.901 61.111 21.57 0.00 41.42 3.59
1357 2279 4.082354 GTCACGAGTATAATAAGCGGGGAT 60.082 45.833 0.00 0.00 0.00 3.85
1395 2317 7.971722 GTGTCACTACCTTGTTTTAAATGTTGT 59.028 33.333 0.00 0.00 0.00 3.32
1639 2563 0.893270 CGTGGGATTTGCACCTTCCA 60.893 55.000 10.13 1.39 0.00 3.53
1919 2843 7.757941 TGATCACATGGTAAAGTCAAATCAA 57.242 32.000 0.00 0.00 0.00 2.57
2306 3231 5.138800 CAAGGTGTACACGTTGTATATGC 57.861 43.478 36.18 15.50 46.28 3.14
2368 3293 3.066760 CCTTCTTGAAAACAAAGCCGTCT 59.933 43.478 0.00 0.00 0.00 4.18
2567 3493 2.726821 CTAGGCCCTTCAATTGCAAGA 58.273 47.619 4.94 0.00 0.00 3.02
2637 3563 1.331756 CTTGTTCTCTTTGCACGCACT 59.668 47.619 0.00 0.00 0.00 4.40
2771 3697 0.239879 AAATAAGGTGGCGCAACACG 59.760 50.000 18.47 0.00 42.23 4.49
2841 3767 4.661709 TGGGACTAAAACACCTCCTAAGTT 59.338 41.667 0.00 0.00 0.00 2.66
3160 4095 2.939460 GCAATCGCTAAACCAACCAT 57.061 45.000 0.00 0.00 34.30 3.55
3190 4125 0.466543 ACTACAAACGTGCAGGGACA 59.533 50.000 11.67 0.00 0.00 4.02
3194 4129 1.493772 TTCGACTACAAACGTGCAGG 58.506 50.000 4.53 4.53 0.00 4.85
3195 4130 2.222289 CGATTCGACTACAAACGTGCAG 60.222 50.000 0.00 0.00 0.00 4.41
3212 4147 2.609737 GGTGGAGACGACTTTGACGATT 60.610 50.000 0.00 0.00 34.70 3.34
3287 4226 0.816825 CACGAAGCAGCCATAGCCAT 60.817 55.000 0.00 0.00 41.25 4.40
3288 4227 1.450134 CACGAAGCAGCCATAGCCA 60.450 57.895 0.00 0.00 41.25 4.75
3289 4228 1.026718 AACACGAAGCAGCCATAGCC 61.027 55.000 0.00 0.00 41.25 3.93
3290 4229 0.375106 GAACACGAAGCAGCCATAGC 59.625 55.000 0.00 0.00 40.32 2.97
3291 4230 0.647410 CGAACACGAAGCAGCCATAG 59.353 55.000 0.00 0.00 0.00 2.23
3292 4231 0.245266 TCGAACACGAAGCAGCCATA 59.755 50.000 0.00 0.00 33.03 2.74
3293 4232 1.005037 TCGAACACGAAGCAGCCAT 60.005 52.632 0.00 0.00 33.03 4.40
3294 4233 1.664649 CTCGAACACGAAGCAGCCA 60.665 57.895 0.00 0.00 35.63 4.75
3295 4234 0.944311 TTCTCGAACACGAAGCAGCC 60.944 55.000 0.00 0.00 35.63 4.85
3296 4235 0.859232 TTTCTCGAACACGAAGCAGC 59.141 50.000 0.00 0.00 35.63 5.25
3297 4236 2.394708 TCTTTCTCGAACACGAAGCAG 58.605 47.619 0.00 0.00 35.63 4.24
3298 4237 2.502213 TCTTTCTCGAACACGAAGCA 57.498 45.000 0.00 0.00 35.63 3.91
3299 4238 2.473049 GCATCTTTCTCGAACACGAAGC 60.473 50.000 0.00 0.00 35.63 3.86
3300 4239 2.092838 GGCATCTTTCTCGAACACGAAG 59.907 50.000 0.00 0.00 35.63 3.79
3301 4240 2.066262 GGCATCTTTCTCGAACACGAA 58.934 47.619 0.00 0.00 35.63 3.85
3302 4241 1.000394 TGGCATCTTTCTCGAACACGA 60.000 47.619 0.00 0.00 34.81 4.35
3303 4242 1.391485 CTGGCATCTTTCTCGAACACG 59.609 52.381 0.00 0.00 0.00 4.49
3304 4243 1.129437 GCTGGCATCTTTCTCGAACAC 59.871 52.381 0.00 0.00 0.00 3.32
3305 4244 1.270785 TGCTGGCATCTTTCTCGAACA 60.271 47.619 0.00 0.00 0.00 3.18
3306 4245 1.129437 GTGCTGGCATCTTTCTCGAAC 59.871 52.381 0.00 0.00 0.00 3.95
3307 4246 1.442769 GTGCTGGCATCTTTCTCGAA 58.557 50.000 0.00 0.00 0.00 3.71
3308 4247 0.391661 GGTGCTGGCATCTTTCTCGA 60.392 55.000 0.00 0.00 0.00 4.04
3309 4248 0.674581 TGGTGCTGGCATCTTTCTCG 60.675 55.000 7.37 0.00 0.00 4.04
3310 4249 1.760192 ATGGTGCTGGCATCTTTCTC 58.240 50.000 7.37 0.00 0.00 2.87
3311 4250 1.822990 CAATGGTGCTGGCATCTTTCT 59.177 47.619 7.37 0.00 0.00 2.52
3312 4251 1.134907 CCAATGGTGCTGGCATCTTTC 60.135 52.381 7.37 0.00 0.00 2.62
3313 4252 0.899720 CCAATGGTGCTGGCATCTTT 59.100 50.000 7.37 4.46 0.00 2.52
3314 4253 0.974010 CCCAATGGTGCTGGCATCTT 60.974 55.000 7.37 0.00 32.10 2.40
3315 4254 1.380785 CCCAATGGTGCTGGCATCT 60.381 57.895 7.37 0.00 32.10 2.90
3316 4255 3.085119 GCCCAATGGTGCTGGCATC 62.085 63.158 0.00 0.00 43.46 3.91
3317 4256 3.078836 GCCCAATGGTGCTGGCAT 61.079 61.111 0.00 0.00 43.46 4.40
3320 4259 3.072468 CTGGCCCAATGGTGCTGG 61.072 66.667 0.00 3.13 0.00 4.85
3321 4260 3.072468 CCTGGCCCAATGGTGCTG 61.072 66.667 0.00 6.18 0.00 4.41
3322 4261 3.593680 ACCTGGCCCAATGGTGCT 61.594 61.111 0.00 0.00 32.16 4.40
3323 4262 3.384532 CACCTGGCCCAATGGTGC 61.385 66.667 17.34 1.04 43.61 5.01
3325 4264 0.709992 AATACACCTGGCCCAATGGT 59.290 50.000 0.00 0.00 33.87 3.55
3326 4265 1.341877 TGAATACACCTGGCCCAATGG 60.342 52.381 0.00 0.00 0.00 3.16
3327 4266 2.142356 TGAATACACCTGGCCCAATG 57.858 50.000 0.00 0.00 0.00 2.82
3328 4267 2.042979 AGTTGAATACACCTGGCCCAAT 59.957 45.455 0.00 0.00 0.00 3.16
3329 4268 1.427368 AGTTGAATACACCTGGCCCAA 59.573 47.619 0.00 0.00 0.00 4.12
3330 4269 1.072266 AGTTGAATACACCTGGCCCA 58.928 50.000 0.00 0.00 0.00 5.36
3331 4270 1.463674 CAGTTGAATACACCTGGCCC 58.536 55.000 0.00 0.00 33.80 5.80
3332 4271 1.463674 CCAGTTGAATACACCTGGCC 58.536 55.000 0.00 0.00 46.50 5.36
3335 4274 2.359900 GCCTCCAGTTGAATACACCTG 58.640 52.381 0.00 0.00 36.51 4.00
3336 4275 1.066143 CGCCTCCAGTTGAATACACCT 60.066 52.381 0.00 0.00 0.00 4.00
3337 4276 1.369625 CGCCTCCAGTTGAATACACC 58.630 55.000 0.00 0.00 0.00 4.16
3338 4277 1.369625 CCGCCTCCAGTTGAATACAC 58.630 55.000 0.00 0.00 0.00 2.90
3339 4278 0.251916 CCCGCCTCCAGTTGAATACA 59.748 55.000 0.00 0.00 0.00 2.29
3340 4279 0.252197 ACCCGCCTCCAGTTGAATAC 59.748 55.000 0.00 0.00 0.00 1.89
3341 4280 0.988832 AACCCGCCTCCAGTTGAATA 59.011 50.000 0.00 0.00 0.00 1.75
3342 4281 0.112412 AAACCCGCCTCCAGTTGAAT 59.888 50.000 0.00 0.00 0.00 2.57
3343 4282 0.766131 TAAACCCGCCTCCAGTTGAA 59.234 50.000 0.00 0.00 0.00 2.69
3344 4283 0.035739 GTAAACCCGCCTCCAGTTGA 59.964 55.000 0.00 0.00 0.00 3.18
3345 4284 0.250553 TGTAAACCCGCCTCCAGTTG 60.251 55.000 0.00 0.00 0.00 3.16
3346 4285 0.036306 CTGTAAACCCGCCTCCAGTT 59.964 55.000 0.00 0.00 0.00 3.16
3347 4286 1.677552 CTGTAAACCCGCCTCCAGT 59.322 57.895 0.00 0.00 0.00 4.00
3348 4287 1.745489 GCTGTAAACCCGCCTCCAG 60.745 63.158 0.00 0.00 0.00 3.86
3349 4288 2.349755 GCTGTAAACCCGCCTCCA 59.650 61.111 0.00 0.00 0.00 3.86
3350 4289 2.437895 GGCTGTAAACCCGCCTCC 60.438 66.667 0.00 0.00 40.62 4.30
3353 4292 2.818274 CGAGGCTGTAAACCCGCC 60.818 66.667 0.00 0.00 44.09 6.13
3354 4293 2.818274 CCGAGGCTGTAAACCCGC 60.818 66.667 0.00 0.00 0.00 6.13
3355 4294 2.818274 GCCGAGGCTGTAAACCCG 60.818 66.667 6.90 0.00 38.26 5.28
3356 4295 1.302993 TTGCCGAGGCTGTAAACCC 60.303 57.895 15.75 0.00 42.51 4.11
3357 4296 1.583495 GGTTGCCGAGGCTGTAAACC 61.583 60.000 15.75 15.50 42.51 3.27
3358 4297 0.887387 TGGTTGCCGAGGCTGTAAAC 60.887 55.000 15.75 10.58 42.51 2.01
3359 4298 0.887387 GTGGTTGCCGAGGCTGTAAA 60.887 55.000 15.75 0.00 42.51 2.01
3360 4299 1.302192 GTGGTTGCCGAGGCTGTAA 60.302 57.895 15.75 0.00 42.51 2.41
3361 4300 2.167398 GAGTGGTTGCCGAGGCTGTA 62.167 60.000 15.75 0.00 42.51 2.74
3362 4301 3.537206 GAGTGGTTGCCGAGGCTGT 62.537 63.158 15.75 0.00 42.51 4.40
3363 4302 2.743928 GAGTGGTTGCCGAGGCTG 60.744 66.667 15.75 0.00 42.51 4.85
3364 4303 4.021925 GGAGTGGTTGCCGAGGCT 62.022 66.667 15.75 0.00 42.51 4.58
3365 4304 3.628646 ATGGAGTGGTTGCCGAGGC 62.629 63.158 7.26 7.26 42.35 4.70
3366 4305 1.746615 CATGGAGTGGTTGCCGAGG 60.747 63.158 0.00 0.00 0.00 4.63
3367 4306 0.606401 AACATGGAGTGGTTGCCGAG 60.606 55.000 0.00 0.00 0.00 4.63
3368 4307 0.605319 GAACATGGAGTGGTTGCCGA 60.605 55.000 0.00 0.00 0.00 5.54
3369 4308 1.586154 GGAACATGGAGTGGTTGCCG 61.586 60.000 0.00 0.00 30.23 5.69
3370 4309 0.251341 AGGAACATGGAGTGGTTGCC 60.251 55.000 0.00 0.00 36.17 4.52
3371 4310 1.168714 GAGGAACATGGAGTGGTTGC 58.831 55.000 0.00 0.00 35.83 4.17
3372 4311 1.442769 CGAGGAACATGGAGTGGTTG 58.557 55.000 0.00 0.00 0.00 3.77
3373 4312 0.324943 CCGAGGAACATGGAGTGGTT 59.675 55.000 0.00 0.00 0.00 3.67
3374 4313 1.553690 CCCGAGGAACATGGAGTGGT 61.554 60.000 0.00 0.00 0.00 4.16
3375 4314 1.221840 CCCGAGGAACATGGAGTGG 59.778 63.158 0.00 0.00 0.00 4.00
3376 4315 1.450312 GCCCGAGGAACATGGAGTG 60.450 63.158 0.00 0.00 0.00 3.51
3377 4316 1.613630 AGCCCGAGGAACATGGAGT 60.614 57.895 0.00 0.00 0.00 3.85
3378 4317 1.144936 GAGCCCGAGGAACATGGAG 59.855 63.158 0.00 0.00 0.00 3.86
3379 4318 1.198094 TTGAGCCCGAGGAACATGGA 61.198 55.000 0.00 0.00 0.00 3.41
3380 4319 0.107017 ATTGAGCCCGAGGAACATGG 60.107 55.000 0.00 0.00 0.00 3.66
3381 4320 1.755179 AATTGAGCCCGAGGAACATG 58.245 50.000 0.00 0.00 0.00 3.21
3382 4321 3.496870 GGATAATTGAGCCCGAGGAACAT 60.497 47.826 0.00 0.00 0.00 2.71
3383 4322 2.158813 GGATAATTGAGCCCGAGGAACA 60.159 50.000 0.00 0.00 0.00 3.18
3384 4323 2.495084 GGATAATTGAGCCCGAGGAAC 58.505 52.381 0.00 0.00 0.00 3.62
3385 4324 1.070134 CGGATAATTGAGCCCGAGGAA 59.930 52.381 0.00 0.00 44.29 3.36
3386 4325 0.679505 CGGATAATTGAGCCCGAGGA 59.320 55.000 0.00 0.00 44.29 3.71
3387 4326 0.679505 TCGGATAATTGAGCCCGAGG 59.320 55.000 0.00 0.00 45.04 4.63
3390 4329 2.455674 TCATCGGATAATTGAGCCCG 57.544 50.000 0.00 0.00 43.02 6.13
3391 4330 3.274288 GGATCATCGGATAATTGAGCCC 58.726 50.000 2.88 0.00 39.47 5.19
3392 4331 3.942829 TGGATCATCGGATAATTGAGCC 58.057 45.455 6.66 6.66 44.30 4.70
3393 4332 4.154918 GGTTGGATCATCGGATAATTGAGC 59.845 45.833 0.00 0.00 32.67 4.26
3394 4333 5.308014 TGGTTGGATCATCGGATAATTGAG 58.692 41.667 0.00 0.00 32.67 3.02
3395 4334 5.303259 TGGTTGGATCATCGGATAATTGA 57.697 39.130 0.00 0.00 32.67 2.57
3396 4335 6.207221 TGATTGGTTGGATCATCGGATAATTG 59.793 38.462 0.00 0.00 32.67 2.32
3397 4336 6.306199 TGATTGGTTGGATCATCGGATAATT 58.694 36.000 0.00 0.00 32.67 1.40
3398 4337 5.879763 TGATTGGTTGGATCATCGGATAAT 58.120 37.500 0.00 0.00 32.67 1.28
3399 4338 5.303259 TGATTGGTTGGATCATCGGATAA 57.697 39.130 0.00 0.00 32.67 1.75
3400 4339 4.972751 TGATTGGTTGGATCATCGGATA 57.027 40.909 0.00 0.00 32.67 2.59
3401 4340 3.862877 TGATTGGTTGGATCATCGGAT 57.137 42.857 0.00 0.00 36.13 4.18
3402 4341 3.743521 GATGATTGGTTGGATCATCGGA 58.256 45.455 10.30 0.00 45.65 4.55
3406 4345 4.976864 TGATCGATGATTGGTTGGATCAT 58.023 39.130 0.54 0.00 44.62 2.45
3407 4346 4.420522 TGATCGATGATTGGTTGGATCA 57.579 40.909 0.54 0.00 38.26 2.92
3408 4347 6.820152 TGATATGATCGATGATTGGTTGGATC 59.180 38.462 0.54 0.00 0.00 3.36
3409 4348 6.596888 GTGATATGATCGATGATTGGTTGGAT 59.403 38.462 0.54 0.00 0.00 3.41
3410 4349 5.934043 GTGATATGATCGATGATTGGTTGGA 59.066 40.000 0.54 0.00 0.00 3.53
3411 4350 5.122869 GGTGATATGATCGATGATTGGTTGG 59.877 44.000 0.54 0.00 0.00 3.77
3412 4351 5.163923 CGGTGATATGATCGATGATTGGTTG 60.164 44.000 0.54 0.00 0.00 3.77
3413 4352 4.931601 CGGTGATATGATCGATGATTGGTT 59.068 41.667 0.54 0.00 0.00 3.67
3414 4353 4.498241 CGGTGATATGATCGATGATTGGT 58.502 43.478 0.54 0.00 0.00 3.67
3415 4354 3.867493 CCGGTGATATGATCGATGATTGG 59.133 47.826 0.54 0.00 0.00 3.16
3416 4355 3.308053 GCCGGTGATATGATCGATGATTG 59.692 47.826 0.54 0.00 0.00 2.67
3417 4356 3.525537 GCCGGTGATATGATCGATGATT 58.474 45.455 0.54 0.00 0.00 2.57
3418 4357 2.480244 CGCCGGTGATATGATCGATGAT 60.480 50.000 10.20 1.48 0.00 2.45
3419 4358 1.135402 CGCCGGTGATATGATCGATGA 60.135 52.381 10.20 0.00 0.00 2.92
3420 4359 1.135402 TCGCCGGTGATATGATCGATG 60.135 52.381 15.21 0.00 0.00 3.84
3421 4360 1.173913 TCGCCGGTGATATGATCGAT 58.826 50.000 15.21 0.00 0.00 3.59
3422 4361 1.135402 CATCGCCGGTGATATGATCGA 60.135 52.381 29.22 13.60 0.00 3.59
3423 4362 1.135402 TCATCGCCGGTGATATGATCG 60.135 52.381 29.22 16.21 0.00 3.69
3424 4363 2.654749 TCATCGCCGGTGATATGATC 57.345 50.000 29.22 0.00 0.00 2.92
3425 4364 3.616956 AATCATCGCCGGTGATATGAT 57.383 42.857 29.22 25.51 40.02 2.45
3426 4365 3.368013 GGTAATCATCGCCGGTGATATGA 60.368 47.826 29.22 24.47 35.35 2.15
3427 4366 2.930040 GGTAATCATCGCCGGTGATATG 59.070 50.000 29.22 20.06 35.35 1.78
3428 4367 2.416836 CGGTAATCATCGCCGGTGATAT 60.417 50.000 29.22 19.85 41.60 1.63
3429 4368 1.068125 CGGTAATCATCGCCGGTGATA 60.068 52.381 29.22 17.71 41.60 2.15
3430 4369 0.319555 CGGTAATCATCGCCGGTGAT 60.320 55.000 24.82 24.82 41.60 3.06
3431 4370 1.066752 CGGTAATCATCGCCGGTGA 59.933 57.895 22.04 22.04 41.60 4.02
3432 4371 3.625232 CGGTAATCATCGCCGGTG 58.375 61.111 9.28 9.28 41.60 4.94
3436 4375 1.726791 CATAGCACGGTAATCATCGCC 59.273 52.381 0.00 0.00 0.00 5.54
3437 4376 1.126846 GCATAGCACGGTAATCATCGC 59.873 52.381 0.00 0.00 0.00 4.58
3438 4377 2.403259 TGCATAGCACGGTAATCATCG 58.597 47.619 0.00 0.00 31.71 3.84
3439 4378 3.809832 AGTTGCATAGCACGGTAATCATC 59.190 43.478 0.00 0.00 38.71 2.92
3440 4379 3.808728 AGTTGCATAGCACGGTAATCAT 58.191 40.909 0.00 0.00 38.71 2.45
3441 4380 3.260475 AGTTGCATAGCACGGTAATCA 57.740 42.857 0.00 0.00 38.71 2.57
3442 4381 3.002348 GGAAGTTGCATAGCACGGTAATC 59.998 47.826 0.00 0.00 38.71 1.75
3443 4382 2.943033 GGAAGTTGCATAGCACGGTAAT 59.057 45.455 0.00 0.00 38.71 1.89
3444 4383 2.289756 TGGAAGTTGCATAGCACGGTAA 60.290 45.455 0.00 0.00 38.71 2.85
3445 4384 1.276705 TGGAAGTTGCATAGCACGGTA 59.723 47.619 0.00 0.00 38.71 4.02
3446 4385 0.036164 TGGAAGTTGCATAGCACGGT 59.964 50.000 0.00 0.00 38.71 4.83
3447 4386 1.382522 ATGGAAGTTGCATAGCACGG 58.617 50.000 8.27 0.00 38.71 4.94
3448 4387 2.537529 CGAATGGAAGTTGCATAGCACG 60.538 50.000 10.55 10.16 38.71 5.34
3449 4388 2.792542 GCGAATGGAAGTTGCATAGCAC 60.793 50.000 23.25 11.06 38.71 4.40
3450 4389 1.401552 GCGAATGGAAGTTGCATAGCA 59.598 47.619 23.25 0.00 34.18 3.49
3451 4390 1.268743 GGCGAATGGAAGTTGCATAGC 60.269 52.381 21.37 21.37 33.61 2.97
3452 4391 2.016318 TGGCGAATGGAAGTTGCATAG 58.984 47.619 10.55 9.01 0.00 2.23
3453 4392 2.121291 TGGCGAATGGAAGTTGCATA 57.879 45.000 10.55 0.00 0.00 3.14
3454 4393 1.203052 CTTGGCGAATGGAAGTTGCAT 59.797 47.619 3.70 3.70 0.00 3.96
3455 4394 0.597568 CTTGGCGAATGGAAGTTGCA 59.402 50.000 0.00 0.00 0.00 4.08
3456 4395 0.109132 CCTTGGCGAATGGAAGTTGC 60.109 55.000 0.00 0.00 0.00 4.17
3457 4396 0.527565 CCCTTGGCGAATGGAAGTTG 59.472 55.000 0.00 0.00 0.00 3.16
3458 4397 0.611896 CCCCTTGGCGAATGGAAGTT 60.612 55.000 4.33 0.00 0.00 2.66
3459 4398 1.000896 CCCCTTGGCGAATGGAAGT 60.001 57.895 4.33 0.00 0.00 3.01
3460 4399 1.754234 CCCCCTTGGCGAATGGAAG 60.754 63.158 4.33 0.00 0.00 3.46
3461 4400 2.235028 TCCCCCTTGGCGAATGGAA 61.235 57.895 4.33 0.00 0.00 3.53
3462 4401 2.612430 TCCCCCTTGGCGAATGGA 60.612 61.111 4.33 0.00 0.00 3.41
3463 4402 2.440247 GTCCCCCTTGGCGAATGG 60.440 66.667 0.00 0.00 0.00 3.16
3464 4403 1.750399 CAGTCCCCCTTGGCGAATG 60.750 63.158 0.00 0.00 0.00 2.67
3465 4404 2.231380 ACAGTCCCCCTTGGCGAAT 61.231 57.895 0.00 0.00 0.00 3.34
3466 4405 2.852075 ACAGTCCCCCTTGGCGAA 60.852 61.111 0.00 0.00 0.00 4.70
3467 4406 3.636231 CACAGTCCCCCTTGGCGA 61.636 66.667 0.00 0.00 0.00 5.54


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.