Multiple sequence alignment - TraesCS4A01G149400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G149400 chr4A 100.000 2276 0 0 1 2276 285950327 285948052 0.000000e+00 4204
1 TraesCS4A01G149400 chr4A 91.525 944 68 4 361 1303 2782215 2781283 0.000000e+00 1290
2 TraesCS4A01G149400 chr4A 91.350 763 59 7 1303 2060 273453519 273454279 0.000000e+00 1037
3 TraesCS4A01G149400 chr4A 88.889 117 13 0 2160 2276 10822200 10822316 6.550000e-31 145
4 TraesCS4A01G149400 chr3D 92.863 1303 91 2 1 1302 127221492 127220191 0.000000e+00 1890
5 TraesCS4A01G149400 chr3D 95.432 613 23 5 1303 1912 461524840 461524230 0.000000e+00 972
6 TraesCS4A01G149400 chr3D 95.261 612 26 3 1303 1912 250122583 250123193 0.000000e+00 966
7 TraesCS4A01G149400 chr3D 78.765 1182 239 12 129 1304 34051815 34052990 0.000000e+00 782
8 TraesCS4A01G149400 chr1A 91.590 1296 106 2 1 1295 445913308 445914601 0.000000e+00 1786
9 TraesCS4A01G149400 chr1A 93.200 250 15 1 1909 2158 196288409 196288162 1.280000e-97 366
10 TraesCS4A01G149400 chr1A 89.167 120 13 0 2157 2276 517240757 517240876 1.410000e-32 150
11 TraesCS4A01G149400 chr1A 85.593 118 17 0 2159 2276 219780334 219780217 8.540000e-25 124
12 TraesCS4A01G149400 chr2B 88.740 1048 113 2 1 1043 548636146 548635099 0.000000e+00 1277
13 TraesCS4A01G149400 chr2B 90.409 855 81 1 1 854 65438409 65437555 0.000000e+00 1123
14 TraesCS4A01G149400 chr2B 87.770 834 101 1 12 844 442324183 442323350 0.000000e+00 974
15 TraesCS4A01G149400 chr2B 77.617 1309 281 12 3 1304 91053412 91054715 0.000000e+00 784
16 TraesCS4A01G149400 chr7A 95.915 612 22 3 1303 1912 375944706 375945316 0.000000e+00 989
17 TraesCS4A01G149400 chr7A 95.425 612 24 4 1303 1912 358973398 358974007 0.000000e+00 972
18 TraesCS4A01G149400 chr7A 91.525 118 10 0 2159 2276 365145794 365145911 1.810000e-36 163
19 TraesCS4A01G149400 chr7A 85.833 120 17 0 2157 2276 144906069 144905950 6.600000e-26 128
20 TraesCS4A01G149400 chr7D 95.603 614 22 5 1303 1912 357922416 357923028 0.000000e+00 979
21 TraesCS4A01G149400 chr7D 95.432 613 24 4 1303 1912 357915539 357916150 0.000000e+00 974
22 TraesCS4A01G149400 chr7D 78.349 1284 265 13 28 1304 131448741 131450018 0.000000e+00 819
23 TraesCS4A01G149400 chr7D 93.600 250 14 1 1909 2158 331335077 331335324 2.760000e-99 372
24 TraesCS4A01G149400 chr7D 91.860 258 18 2 1909 2166 337948783 337948529 7.730000e-95 357
25 TraesCS4A01G149400 chr4D 95.432 613 24 4 1303 1912 202642633 202643244 0.000000e+00 974
26 TraesCS4A01G149400 chr5D 95.261 612 26 3 1303 1912 185308293 185308903 0.000000e+00 966
27 TraesCS4A01G149400 chr5D 93.200 250 15 1 1909 2158 185817859 185818106 1.280000e-97 366
28 TraesCS4A01G149400 chr5B 78.656 1176 240 11 135 1304 658766082 658764912 0.000000e+00 771
29 TraesCS4A01G149400 chr6B 78.445 1183 242 13 129 1305 127683752 127684927 0.000000e+00 760
30 TraesCS4A01G149400 chr6D 93.227 251 14 2 1909 2158 214147930 214148178 1.280000e-97 366
31 TraesCS4A01G149400 chr1D 93.200 250 15 1 1909 2158 125843327 125843080 1.280000e-97 366
32 TraesCS4A01G149400 chr1D 92.829 251 16 2 1909 2159 162286706 162286954 1.660000e-96 363
33 TraesCS4A01G149400 chr1D 88.983 118 12 1 2159 2276 136417208 136417092 6.550000e-31 145
34 TraesCS4A01G149400 chr3B 92.857 252 16 1 1909 2160 341703210 341703459 4.620000e-97 364
35 TraesCS4A01G149400 chr5A 89.831 118 12 0 2159 2276 518399869 518399986 3.920000e-33 152
36 TraesCS4A01G149400 chr5A 89.744 117 11 1 2160 2276 51539365 51539250 5.070000e-32 148
37 TraesCS4A01G149400 chr5A 88.889 117 13 0 2159 2275 679909156 679909272 6.550000e-31 145


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G149400 chr4A 285948052 285950327 2275 True 4204 4204 100.000 1 2276 1 chr4A.!!$R2 2275
1 TraesCS4A01G149400 chr4A 2781283 2782215 932 True 1290 1290 91.525 361 1303 1 chr4A.!!$R1 942
2 TraesCS4A01G149400 chr4A 273453519 273454279 760 False 1037 1037 91.350 1303 2060 1 chr4A.!!$F2 757
3 TraesCS4A01G149400 chr3D 127220191 127221492 1301 True 1890 1890 92.863 1 1302 1 chr3D.!!$R1 1301
4 TraesCS4A01G149400 chr3D 461524230 461524840 610 True 972 972 95.432 1303 1912 1 chr3D.!!$R2 609
5 TraesCS4A01G149400 chr3D 250122583 250123193 610 False 966 966 95.261 1303 1912 1 chr3D.!!$F2 609
6 TraesCS4A01G149400 chr3D 34051815 34052990 1175 False 782 782 78.765 129 1304 1 chr3D.!!$F1 1175
7 TraesCS4A01G149400 chr1A 445913308 445914601 1293 False 1786 1786 91.590 1 1295 1 chr1A.!!$F1 1294
8 TraesCS4A01G149400 chr2B 548635099 548636146 1047 True 1277 1277 88.740 1 1043 1 chr2B.!!$R3 1042
9 TraesCS4A01G149400 chr2B 65437555 65438409 854 True 1123 1123 90.409 1 854 1 chr2B.!!$R1 853
10 TraesCS4A01G149400 chr2B 442323350 442324183 833 True 974 974 87.770 12 844 1 chr2B.!!$R2 832
11 TraesCS4A01G149400 chr2B 91053412 91054715 1303 False 784 784 77.617 3 1304 1 chr2B.!!$F1 1301
12 TraesCS4A01G149400 chr7A 375944706 375945316 610 False 989 989 95.915 1303 1912 1 chr7A.!!$F3 609
13 TraesCS4A01G149400 chr7A 358973398 358974007 609 False 972 972 95.425 1303 1912 1 chr7A.!!$F1 609
14 TraesCS4A01G149400 chr7D 357922416 357923028 612 False 979 979 95.603 1303 1912 1 chr7D.!!$F4 609
15 TraesCS4A01G149400 chr7D 357915539 357916150 611 False 974 974 95.432 1303 1912 1 chr7D.!!$F3 609
16 TraesCS4A01G149400 chr7D 131448741 131450018 1277 False 819 819 78.349 28 1304 1 chr7D.!!$F1 1276
17 TraesCS4A01G149400 chr4D 202642633 202643244 611 False 974 974 95.432 1303 1912 1 chr4D.!!$F1 609
18 TraesCS4A01G149400 chr5D 185308293 185308903 610 False 966 966 95.261 1303 1912 1 chr5D.!!$F1 609
19 TraesCS4A01G149400 chr5B 658764912 658766082 1170 True 771 771 78.656 135 1304 1 chr5B.!!$R1 1169
20 TraesCS4A01G149400 chr6B 127683752 127684927 1175 False 760 760 78.445 129 1305 1 chr6B.!!$F1 1176

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
308 309 0.10412 CAACACCTCACAGACGGACA 59.896 55.0 0.0 0.0 0.0 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2086 2101 0.034896 TGGAGGAAGTCGGCTTTGAC 59.965 55.0 2.6 0.0 39.21 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 0.472925 TGCCAGGAGGAACCACACTA 60.473 55.000 0.00 0.00 42.04 2.74
99 100 1.202758 AGACAATTGGACTTGGCGACA 60.203 47.619 10.83 0.00 39.24 4.35
126 127 5.361285 AGCTAATCCGAGACACTTTCATAGT 59.639 40.000 0.00 0.00 37.68 2.12
308 309 0.104120 CAACACCTCACAGACGGACA 59.896 55.000 0.00 0.00 0.00 4.02
328 329 1.531423 AGCAGATGTGGAAGCAACTG 58.469 50.000 0.00 0.00 40.69 3.16
342 343 1.601412 GCAACTGTGGAAGCTCAAAGC 60.601 52.381 0.00 0.00 42.84 3.51
382 383 1.893062 CTGGTGGCGAGTCATCAGA 59.107 57.895 12.21 0.00 45.96 3.27
415 416 0.109412 ACGAAAGTACTCTTCGGCGG 60.109 55.000 27.83 12.74 46.88 6.13
550 551 2.105134 TCTTTTTGGTACTCGAAGGCCA 59.895 45.455 5.01 0.00 0.00 5.36
588 592 3.935203 ACATGGTCTCGTGACATCATTTC 59.065 43.478 18.45 1.08 44.61 2.17
615 619 4.878971 TGTTCAATTTTCGGACACTGAGAA 59.121 37.500 0.00 0.00 0.00 2.87
634 638 5.878133 GAGAAGGCTCAAATGATTTCAGTC 58.122 41.667 0.00 0.00 40.96 3.51
656 660 4.594491 TCATGTGGACTATATGGCACTCAT 59.406 41.667 0.00 0.00 39.78 2.90
727 731 1.109920 GGCGCATCAGAGAGGACCTA 61.110 60.000 10.83 0.00 0.00 3.08
734 738 1.641192 TCAGAGAGGACCTAGCCTTGA 59.359 52.381 0.00 0.00 38.73 3.02
965 974 1.066430 GGCACTCCGAGATGGTGTTAA 60.066 52.381 1.33 0.00 42.49 2.01
1150 1159 1.686325 ATCCAGAGCGGCCAACGTAT 61.686 55.000 2.24 0.00 46.52 3.06
1327 1336 2.291540 CCATTGTTACACCCACATCCCT 60.292 50.000 0.00 0.00 0.00 4.20
1332 1341 1.072266 TACACCCACATCCCTTGCTT 58.928 50.000 0.00 0.00 0.00 3.91
1616 1626 0.877743 GAGTGCAGAAGCCTTGGAAC 59.122 55.000 0.00 0.00 41.13 3.62
1652 1662 6.602410 TGCCACTTCATAAATTTCATCCAA 57.398 33.333 0.00 0.00 0.00 3.53
1653 1663 6.397272 TGCCACTTCATAAATTTCATCCAAC 58.603 36.000 0.00 0.00 0.00 3.77
1686 1696 4.616181 GTGCTGCGTCACCTTTATTATT 57.384 40.909 0.00 0.00 0.00 1.40
1689 1699 3.243068 GCTGCGTCACCTTTATTATTGGG 60.243 47.826 0.00 0.00 0.00 4.12
1752 1762 0.976073 AGAGTCCGTATGTGTGGGGG 60.976 60.000 0.00 0.00 0.00 5.40
1916 1931 7.278203 TCACGTACTTTGTTTGTGTTCATCTTA 59.722 33.333 0.00 0.00 32.55 2.10
1931 1946 8.391106 GTGTTCATCTTATATTCGCAATATCCC 58.609 37.037 5.13 0.00 35.72 3.85
1946 1961 6.187125 CAATATCCCGATTGCAATCTTAGG 57.813 41.667 31.12 27.07 33.24 2.69
1962 1977 6.809630 ATCTTAGGTTCTTGCTTGTTCTTC 57.190 37.500 0.00 0.00 0.00 2.87
1967 1982 4.157840 AGGTTCTTGCTTGTTCTTCGTTTT 59.842 37.500 0.00 0.00 0.00 2.43
1970 1985 5.560966 TCTTGCTTGTTCTTCGTTTTCTT 57.439 34.783 0.00 0.00 0.00 2.52
1978 1993 4.201910 TGTTCTTCGTTTTCTTGCAGGAAG 60.202 41.667 11.40 3.75 36.61 3.46
1979 1994 2.290641 TCTTCGTTTTCTTGCAGGAAGC 59.709 45.455 11.40 8.01 45.96 3.86
2003 2018 1.001974 CCTTCGTGGTCAGGTTGATCA 59.998 52.381 0.00 0.00 34.65 2.92
2023 2038 2.171725 GCTCCGGCGTGGTCAATAC 61.172 63.158 6.01 0.00 39.52 1.89
2026 2041 2.582436 CGGCGTGGTCAATACCCT 59.418 61.111 0.00 0.00 46.16 4.34
2027 2042 1.520787 CGGCGTGGTCAATACCCTC 60.521 63.158 0.00 0.00 46.16 4.30
2028 2043 1.905512 GGCGTGGTCAATACCCTCT 59.094 57.895 0.00 0.00 46.16 3.69
2029 2044 0.179081 GGCGTGGTCAATACCCTCTC 60.179 60.000 0.00 0.00 46.16 3.20
2030 2045 0.535335 GCGTGGTCAATACCCTCTCA 59.465 55.000 0.00 0.00 46.16 3.27
2031 2046 1.471676 GCGTGGTCAATACCCTCTCAG 60.472 57.143 0.00 0.00 46.16 3.35
2064 2079 4.932789 TGCTAAGGCACGATGTCC 57.067 55.556 0.00 0.00 44.28 4.02
2065 2080 2.286826 TGCTAAGGCACGATGTCCT 58.713 52.632 0.00 0.00 44.28 3.85
2066 2081 0.175760 TGCTAAGGCACGATGTCCTC 59.824 55.000 0.00 0.00 44.28 3.71
2067 2082 3.480046 TGCTAAGGCACGATGTCCTCG 62.480 57.143 0.00 0.00 44.28 4.63
2074 2089 2.579787 CGATGTCCTCGCACGTCC 60.580 66.667 0.00 0.00 41.14 4.79
2075 2090 2.579787 GATGTCCTCGCACGTCCG 60.580 66.667 0.00 0.00 0.00 4.79
2076 2091 3.338126 GATGTCCTCGCACGTCCGT 62.338 63.158 0.00 0.00 0.00 4.69
2077 2092 1.985447 GATGTCCTCGCACGTCCGTA 61.985 60.000 0.00 0.00 0.00 4.02
2078 2093 1.989966 ATGTCCTCGCACGTCCGTAG 61.990 60.000 0.00 0.00 0.00 3.51
2079 2094 2.359107 TCCTCGCACGTCCGTAGT 60.359 61.111 0.00 0.00 0.00 2.73
2080 2095 2.099831 CCTCGCACGTCCGTAGTC 59.900 66.667 0.00 0.00 0.00 2.59
2081 2096 2.276493 CTCGCACGTCCGTAGTCG 60.276 66.667 0.00 0.00 0.00 4.18
2093 2108 1.189403 CGTAGTCGGATCGTCAAAGC 58.811 55.000 0.00 0.00 0.00 3.51
2094 2109 1.557651 GTAGTCGGATCGTCAAAGCC 58.442 55.000 0.00 0.00 0.00 4.35
2095 2110 0.099968 TAGTCGGATCGTCAAAGCCG 59.900 55.000 0.00 0.00 44.83 5.52
2097 2112 1.153901 TCGGATCGTCAAAGCCGAC 60.154 57.895 0.00 0.00 46.80 4.79
2098 2113 1.153823 CGGATCGTCAAAGCCGACT 60.154 57.895 0.00 0.00 46.29 4.18
2099 2114 0.736325 CGGATCGTCAAAGCCGACTT 60.736 55.000 0.00 0.00 46.29 3.01
2100 2115 1.000145 GGATCGTCAAAGCCGACTTC 59.000 55.000 0.00 0.00 37.12 3.01
2101 2116 1.000145 GATCGTCAAAGCCGACTTCC 59.000 55.000 0.00 0.00 37.12 3.46
2102 2117 0.608640 ATCGTCAAAGCCGACTTCCT 59.391 50.000 0.00 0.00 37.12 3.36
2103 2118 0.038526 TCGTCAAAGCCGACTTCCTC 60.039 55.000 0.00 0.00 34.05 3.71
2104 2119 1.014564 CGTCAAAGCCGACTTCCTCC 61.015 60.000 0.00 0.00 34.05 4.30
2105 2120 0.034896 GTCAAAGCCGACTTCCTCCA 59.965 55.000 0.00 0.00 34.05 3.86
2106 2121 0.321671 TCAAAGCCGACTTCCTCCAG 59.678 55.000 0.00 0.00 34.05 3.86
2107 2122 0.321671 CAAAGCCGACTTCCTCCAGA 59.678 55.000 0.00 0.00 34.05 3.86
2108 2123 1.056660 AAAGCCGACTTCCTCCAGAA 58.943 50.000 0.00 0.00 34.05 3.02
2109 2124 0.321996 AAGCCGACTTCCTCCAGAAC 59.678 55.000 0.00 0.00 0.00 3.01
2110 2125 1.446272 GCCGACTTCCTCCAGAACG 60.446 63.158 0.00 0.00 0.00 3.95
2111 2126 1.874345 GCCGACTTCCTCCAGAACGA 61.874 60.000 0.00 0.00 0.00 3.85
2112 2127 0.818296 CCGACTTCCTCCAGAACGAT 59.182 55.000 0.00 0.00 0.00 3.73
2113 2128 2.022195 CCGACTTCCTCCAGAACGATA 58.978 52.381 0.00 0.00 0.00 2.92
2114 2129 2.033550 CCGACTTCCTCCAGAACGATAG 59.966 54.545 0.00 0.00 46.19 2.08
2115 2130 2.541999 CGACTTCCTCCAGAACGATAGC 60.542 54.545 0.00 0.00 42.67 2.97
2116 2131 1.757699 ACTTCCTCCAGAACGATAGCC 59.242 52.381 0.00 0.00 42.67 3.93
2117 2132 2.035632 CTTCCTCCAGAACGATAGCCT 58.964 52.381 0.00 0.00 42.67 4.58
2118 2133 1.693627 TCCTCCAGAACGATAGCCTC 58.306 55.000 0.00 0.00 42.67 4.70
2119 2134 0.676736 CCTCCAGAACGATAGCCTCC 59.323 60.000 0.00 0.00 42.67 4.30
2120 2135 1.403814 CTCCAGAACGATAGCCTCCA 58.596 55.000 0.00 0.00 42.67 3.86
2121 2136 1.967066 CTCCAGAACGATAGCCTCCAT 59.033 52.381 0.00 0.00 42.67 3.41
2122 2137 1.964223 TCCAGAACGATAGCCTCCATC 59.036 52.381 0.00 0.00 42.67 3.51
2123 2138 1.967066 CCAGAACGATAGCCTCCATCT 59.033 52.381 0.00 0.00 42.67 2.90
2124 2139 2.029470 CCAGAACGATAGCCTCCATCTC 60.029 54.545 0.00 0.00 42.67 2.75
2125 2140 2.625314 CAGAACGATAGCCTCCATCTCA 59.375 50.000 0.00 0.00 42.67 3.27
2126 2141 3.257873 CAGAACGATAGCCTCCATCTCAT 59.742 47.826 0.00 0.00 42.67 2.90
2127 2142 3.509575 AGAACGATAGCCTCCATCTCATC 59.490 47.826 0.00 0.00 42.67 2.92
2128 2143 1.815613 ACGATAGCCTCCATCTCATCG 59.184 52.381 0.00 0.00 40.68 3.84
2129 2144 2.087646 CGATAGCCTCCATCTCATCGA 58.912 52.381 0.00 0.00 37.95 3.59
2130 2145 2.489722 CGATAGCCTCCATCTCATCGAA 59.510 50.000 0.00 0.00 37.95 3.71
2131 2146 3.057245 CGATAGCCTCCATCTCATCGAAA 60.057 47.826 0.00 0.00 37.95 3.46
2132 2147 2.906691 AGCCTCCATCTCATCGAAAG 57.093 50.000 0.00 0.00 0.00 2.62
2151 2166 3.341270 TGGGACACACCTTTGCCT 58.659 55.556 0.00 0.00 38.98 4.75
2152 2167 1.150536 TGGGACACACCTTTGCCTC 59.849 57.895 0.00 0.00 38.98 4.70
2153 2168 1.352622 TGGGACACACCTTTGCCTCT 61.353 55.000 0.00 0.00 38.98 3.69
2154 2169 0.690762 GGGACACACCTTTGCCTCTA 59.309 55.000 0.00 0.00 38.98 2.43
2155 2170 1.282157 GGGACACACCTTTGCCTCTAT 59.718 52.381 0.00 0.00 38.98 1.98
2156 2171 2.633488 GGACACACCTTTGCCTCTATC 58.367 52.381 0.00 0.00 35.41 2.08
2157 2172 2.027192 GGACACACCTTTGCCTCTATCA 60.027 50.000 0.00 0.00 35.41 2.15
2158 2173 3.003480 GACACACCTTTGCCTCTATCAC 58.997 50.000 0.00 0.00 0.00 3.06
2159 2174 2.290323 ACACACCTTTGCCTCTATCACC 60.290 50.000 0.00 0.00 0.00 4.02
2160 2175 1.985159 ACACCTTTGCCTCTATCACCA 59.015 47.619 0.00 0.00 0.00 4.17
2161 2176 2.375174 ACACCTTTGCCTCTATCACCAA 59.625 45.455 0.00 0.00 0.00 3.67
2162 2177 3.010584 ACACCTTTGCCTCTATCACCAAT 59.989 43.478 0.00 0.00 0.00 3.16
2163 2178 3.629398 CACCTTTGCCTCTATCACCAATC 59.371 47.826 0.00 0.00 0.00 2.67
2164 2179 3.525199 ACCTTTGCCTCTATCACCAATCT 59.475 43.478 0.00 0.00 0.00 2.40
2165 2180 4.018050 ACCTTTGCCTCTATCACCAATCTT 60.018 41.667 0.00 0.00 0.00 2.40
2166 2181 4.337555 CCTTTGCCTCTATCACCAATCTTG 59.662 45.833 0.00 0.00 0.00 3.02
2167 2182 2.923121 TGCCTCTATCACCAATCTTGC 58.077 47.619 0.00 0.00 0.00 4.01
2168 2183 2.225467 GCCTCTATCACCAATCTTGCC 58.775 52.381 0.00 0.00 0.00 4.52
2169 2184 2.158696 GCCTCTATCACCAATCTTGCCT 60.159 50.000 0.00 0.00 0.00 4.75
2170 2185 3.686691 GCCTCTATCACCAATCTTGCCTT 60.687 47.826 0.00 0.00 0.00 4.35
2171 2186 4.133078 CCTCTATCACCAATCTTGCCTTC 58.867 47.826 0.00 0.00 0.00 3.46
2172 2187 4.133078 CTCTATCACCAATCTTGCCTTCC 58.867 47.826 0.00 0.00 0.00 3.46
2173 2188 2.905415 ATCACCAATCTTGCCTTCCA 57.095 45.000 0.00 0.00 0.00 3.53
2174 2189 1.909700 TCACCAATCTTGCCTTCCAC 58.090 50.000 0.00 0.00 0.00 4.02
2175 2190 0.523072 CACCAATCTTGCCTTCCACG 59.477 55.000 0.00 0.00 0.00 4.94
2176 2191 1.244019 ACCAATCTTGCCTTCCACGC 61.244 55.000 0.00 0.00 0.00 5.34
2177 2192 1.243342 CCAATCTTGCCTTCCACGCA 61.243 55.000 0.00 0.00 0.00 5.24
2178 2193 0.597568 CAATCTTGCCTTCCACGCAA 59.402 50.000 0.00 0.00 43.71 4.85
2179 2194 1.000385 CAATCTTGCCTTCCACGCAAA 60.000 47.619 0.00 0.00 45.11 3.68
2180 2195 0.883833 ATCTTGCCTTCCACGCAAAG 59.116 50.000 0.00 0.00 45.11 2.77
2181 2196 1.172180 TCTTGCCTTCCACGCAAAGG 61.172 55.000 6.69 6.69 45.11 3.11
2182 2197 1.152860 TTGCCTTCCACGCAAAGGA 60.153 52.632 13.57 0.00 45.15 3.36
2183 2198 1.172180 TTGCCTTCCACGCAAAGGAG 61.172 55.000 13.57 0.00 45.15 3.69
2184 2199 1.302511 GCCTTCCACGCAAAGGAGA 60.303 57.895 13.57 0.00 45.15 3.71
2185 2200 1.301677 GCCTTCCACGCAAAGGAGAG 61.302 60.000 13.57 3.40 45.15 3.20
2186 2201 0.035458 CCTTCCACGCAAAGGAGAGT 59.965 55.000 5.37 0.00 45.15 3.24
2187 2202 1.433534 CTTCCACGCAAAGGAGAGTC 58.566 55.000 0.00 0.00 36.33 3.36
2188 2203 0.034896 TTCCACGCAAAGGAGAGTCC 59.965 55.000 0.00 0.00 36.33 3.85
2200 2215 1.334243 GGAGAGTCCTATCCGAACACG 59.666 57.143 0.00 0.00 30.64 4.49
2201 2216 3.898301 GGAGAGTCCTATCCGAACACGG 61.898 59.091 0.00 0.00 39.83 4.94
2202 2217 0.384669 GAGTCCTATCCGAACACGGG 59.615 60.000 8.75 0.00 45.88 5.28
2203 2218 1.041447 AGTCCTATCCGAACACGGGG 61.041 60.000 8.75 2.90 45.88 5.73
2204 2219 1.759299 TCCTATCCGAACACGGGGG 60.759 63.158 8.75 8.76 45.88 5.40
2232 2247 6.644181 GGTCTTCTACCTTGTATATTTACGGC 59.356 42.308 0.00 0.00 45.75 5.68
2233 2248 6.644181 GTCTTCTACCTTGTATATTTACGGCC 59.356 42.308 0.00 0.00 0.00 6.13
2234 2249 5.473066 TCTACCTTGTATATTTACGGCCC 57.527 43.478 0.00 0.00 0.00 5.80
2235 2250 4.900652 TCTACCTTGTATATTTACGGCCCA 59.099 41.667 0.00 0.00 0.00 5.36
2236 2251 3.812262 ACCTTGTATATTTACGGCCCAC 58.188 45.455 0.00 0.00 0.00 4.61
2237 2252 3.143728 CCTTGTATATTTACGGCCCACC 58.856 50.000 0.00 0.00 0.00 4.61
2238 2253 3.433882 CCTTGTATATTTACGGCCCACCA 60.434 47.826 0.00 0.00 34.57 4.17
2239 2254 3.478857 TGTATATTTACGGCCCACCAG 57.521 47.619 0.00 0.00 34.57 4.00
2240 2255 2.773087 TGTATATTTACGGCCCACCAGT 59.227 45.455 0.00 0.00 34.57 4.00
2241 2256 2.632987 ATATTTACGGCCCACCAGTC 57.367 50.000 0.00 0.00 34.57 3.51
2242 2257 1.575419 TATTTACGGCCCACCAGTCT 58.425 50.000 0.00 0.00 34.57 3.24
2243 2258 0.035439 ATTTACGGCCCACCAGTCTG 60.035 55.000 0.00 0.00 34.57 3.51
2244 2259 2.119484 TTTACGGCCCACCAGTCTGG 62.119 60.000 17.88 17.88 45.02 3.86
2249 2264 3.341629 CCCACCAGTCTGGCCCAT 61.342 66.667 19.40 0.00 42.67 4.00
2250 2265 2.000701 CCCACCAGTCTGGCCCATA 61.001 63.158 19.40 0.00 42.67 2.74
2251 2266 1.570857 CCCACCAGTCTGGCCCATAA 61.571 60.000 19.40 0.00 42.67 1.90
2252 2267 0.394352 CCACCAGTCTGGCCCATAAC 60.394 60.000 19.40 0.00 42.67 1.89
2253 2268 0.327924 CACCAGTCTGGCCCATAACA 59.672 55.000 19.40 0.00 42.67 2.41
2254 2269 0.328258 ACCAGTCTGGCCCATAACAC 59.672 55.000 19.40 0.00 42.67 3.32
2255 2270 0.327924 CCAGTCTGGCCCATAACACA 59.672 55.000 5.79 0.00 0.00 3.72
2256 2271 1.064463 CCAGTCTGGCCCATAACACAT 60.064 52.381 5.79 0.00 0.00 3.21
2257 2272 2.019249 CAGTCTGGCCCATAACACATG 58.981 52.381 0.00 0.00 0.00 3.21
2258 2273 1.064463 AGTCTGGCCCATAACACATGG 60.064 52.381 0.00 0.00 38.88 3.66
2259 2274 0.395586 TCTGGCCCATAACACATGGC 60.396 55.000 0.00 0.00 43.26 4.40
2261 2276 3.537388 GCCCATAACACATGGCCC 58.463 61.111 0.00 0.00 37.94 5.80
2262 2277 2.489275 GCCCATAACACATGGCCCG 61.489 63.158 0.00 0.00 37.94 6.13
2263 2278 1.827789 CCCATAACACATGGCCCGG 60.828 63.158 0.00 0.00 37.85 5.73
2264 2279 1.225983 CCATAACACATGGCCCGGA 59.774 57.895 0.73 0.00 31.75 5.14
2265 2280 1.101049 CCATAACACATGGCCCGGAC 61.101 60.000 0.73 0.00 31.75 4.79
2266 2281 0.393673 CATAACACATGGCCCGGACA 60.394 55.000 0.73 0.00 0.00 4.02
2267 2282 0.550914 ATAACACATGGCCCGGACAT 59.449 50.000 0.73 0.00 0.00 3.06
2268 2283 0.107410 TAACACATGGCCCGGACATC 60.107 55.000 1.39 0.00 0.00 3.06
2269 2284 2.516930 CACATGGCCCGGACATCC 60.517 66.667 1.39 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 4.462834 TCGATCAACTCATCAACAGTACCT 59.537 41.667 0.00 0.00 0.00 3.08
99 100 2.445682 AGTGTCTCGGATTAGCTCCT 57.554 50.000 0.00 0.00 42.47 3.69
191 192 1.315257 CCACTTCTTTCATGGGCCCG 61.315 60.000 19.37 3.22 0.00 6.13
308 309 1.884579 CAGTTGCTTCCACATCTGCTT 59.115 47.619 0.00 0.00 32.33 3.91
328 329 1.670967 GGCAATGCTTTGAGCTTCCAC 60.671 52.381 15.97 0.00 42.97 4.02
342 343 1.606668 ACACACGTACCTTTGGCAATG 59.393 47.619 0.00 2.99 0.00 2.82
382 383 3.442076 ACTTTCGTCTGGTAGGATTCCT 58.558 45.455 10.72 10.72 37.71 3.36
415 416 9.708222 CATCTGCTTATAACTTTAATGTGACAC 57.292 33.333 0.00 0.00 0.00 3.67
550 551 1.677576 CATGTATTGGGATGCAAGCGT 59.322 47.619 0.00 0.00 31.50 5.07
588 592 5.049474 TCAGTGTCCGAAAATTGAACATCAG 60.049 40.000 0.00 0.00 0.00 2.90
615 619 5.014858 ACATGACTGAAATCATTTGAGCCT 58.985 37.500 0.00 0.00 37.20 4.58
634 638 4.341366 TGAGTGCCATATAGTCCACATG 57.659 45.455 0.00 0.00 0.00 3.21
656 660 4.002316 TCATCATGCGTGATTCTGTTTCA 58.998 39.130 18.92 0.00 42.37 2.69
734 738 4.434545 GCATGAGCCTATGGATATCCAT 57.565 45.455 34.11 34.11 46.38 3.41
745 750 2.558795 GGAGTATCGAAGCATGAGCCTA 59.441 50.000 0.00 0.00 37.49 3.93
1108 1117 9.206870 GGATACATGTTGAACATCAAACAAATT 57.793 29.630 8.03 0.00 38.22 1.82
1183 1192 1.001974 CCAACTCTCGGTGACCATCAA 59.998 52.381 1.11 0.00 0.00 2.57
1327 1336 6.553953 TTGGTCCAGTATGTATAGAAGCAA 57.446 37.500 0.00 0.00 0.00 3.91
1470 1479 1.425066 CTTATCCATGCCAGGCCCTAA 59.575 52.381 9.64 0.00 0.00 2.69
1471 1480 1.067295 CTTATCCATGCCAGGCCCTA 58.933 55.000 9.64 0.00 0.00 3.53
1652 1662 0.105039 GCAGCACCTAGAATAGCCGT 59.895 55.000 0.00 0.00 37.37 5.68
1653 1663 0.941463 CGCAGCACCTAGAATAGCCG 60.941 60.000 0.00 0.00 37.37 5.52
1689 1699 3.608316 TTTGAAAATACATGGGCCTGC 57.392 42.857 4.53 0.00 0.00 4.85
1723 1733 6.757010 CACACATACGGACTCTAAAAATAGCT 59.243 38.462 0.00 0.00 0.00 3.32
1752 1762 4.024302 CGAAACCAACCCTAACTCTTGTTC 60.024 45.833 0.00 0.00 37.59 3.18
1931 1946 4.346129 GCAAGAACCTAAGATTGCAATCG 58.654 43.478 28.88 19.01 45.66 3.34
1943 1958 4.067972 ACGAAGAACAAGCAAGAACCTA 57.932 40.909 0.00 0.00 0.00 3.08
1946 1961 5.332707 AGAAAACGAAGAACAAGCAAGAAC 58.667 37.500 0.00 0.00 0.00 3.01
1985 2000 2.698803 CATGATCAACCTGACCACGAA 58.301 47.619 0.00 0.00 0.00 3.85
1986 2001 1.675714 GCATGATCAACCTGACCACGA 60.676 52.381 0.00 0.00 0.00 4.35
2003 2018 1.966901 TATTGACCACGCCGGAGCAT 61.967 55.000 5.05 0.00 39.83 3.79
2023 2038 2.675317 CGCTAAACCAACTCTGAGAGGG 60.675 54.545 14.83 13.83 33.35 4.30
2026 2041 4.245660 CAATCGCTAAACCAACTCTGAGA 58.754 43.478 12.44 0.00 0.00 3.27
2027 2042 3.181516 GCAATCGCTAAACCAACTCTGAG 60.182 47.826 2.45 2.45 34.30 3.35
2028 2043 2.742053 GCAATCGCTAAACCAACTCTGA 59.258 45.455 0.00 0.00 34.30 3.27
2029 2044 3.122937 GCAATCGCTAAACCAACTCTG 57.877 47.619 0.00 0.00 34.30 3.35
2060 2075 2.669229 TACGGACGTGCGAGGACA 60.669 61.111 36.06 11.92 0.00 4.02
2061 2076 2.099831 CTACGGACGTGCGAGGAC 59.900 66.667 36.06 0.00 0.00 3.85
2062 2077 2.359107 ACTACGGACGTGCGAGGA 60.359 61.111 36.06 18.40 0.00 3.71
2063 2078 2.099831 GACTACGGACGTGCGAGG 59.900 66.667 36.06 26.27 0.00 4.63
2064 2079 2.276493 CGACTACGGACGTGCGAG 60.276 66.667 36.06 27.01 35.72 5.03
2074 2089 1.189403 GCTTTGACGATCCGACTACG 58.811 55.000 0.00 0.00 39.43 3.51
2075 2090 1.557651 GGCTTTGACGATCCGACTAC 58.442 55.000 0.00 0.00 0.00 2.73
2076 2091 0.099968 CGGCTTTGACGATCCGACTA 59.900 55.000 0.00 0.00 44.23 2.59
2077 2092 1.153823 CGGCTTTGACGATCCGACT 60.154 57.895 0.00 0.00 44.23 4.18
2078 2093 1.153901 TCGGCTTTGACGATCCGAC 60.154 57.895 0.00 0.00 44.99 4.79
2084 2099 0.038526 GAGGAAGTCGGCTTTGACGA 60.039 55.000 2.60 0.00 42.47 4.20
2085 2100 1.014564 GGAGGAAGTCGGCTTTGACG 61.015 60.000 2.60 0.00 43.70 4.35
2086 2101 0.034896 TGGAGGAAGTCGGCTTTGAC 59.965 55.000 2.60 0.00 39.21 3.18
2087 2102 0.321671 CTGGAGGAAGTCGGCTTTGA 59.678 55.000 2.60 0.00 34.61 2.69
2088 2103 0.321671 TCTGGAGGAAGTCGGCTTTG 59.678 55.000 2.60 0.00 34.61 2.77
2089 2104 1.056660 TTCTGGAGGAAGTCGGCTTT 58.943 50.000 2.60 0.00 34.61 3.51
2090 2105 0.321996 GTTCTGGAGGAAGTCGGCTT 59.678 55.000 0.00 0.00 37.71 4.35
2091 2106 1.878656 CGTTCTGGAGGAAGTCGGCT 61.879 60.000 0.00 0.00 34.23 5.52
2092 2107 1.446272 CGTTCTGGAGGAAGTCGGC 60.446 63.158 0.00 0.00 34.23 5.54
2093 2108 0.818296 ATCGTTCTGGAGGAAGTCGG 59.182 55.000 0.00 0.00 34.23 4.79
2094 2109 2.541999 GCTATCGTTCTGGAGGAAGTCG 60.542 54.545 0.00 0.00 34.23 4.18
2095 2110 2.223852 GGCTATCGTTCTGGAGGAAGTC 60.224 54.545 0.00 0.00 34.23 3.01
2096 2111 1.757699 GGCTATCGTTCTGGAGGAAGT 59.242 52.381 0.00 0.00 34.23 3.01
2097 2112 2.035321 GAGGCTATCGTTCTGGAGGAAG 59.965 54.545 0.00 0.00 34.23 3.46
2098 2113 2.032620 GAGGCTATCGTTCTGGAGGAA 58.967 52.381 0.00 0.00 0.00 3.36
2099 2114 1.693627 GAGGCTATCGTTCTGGAGGA 58.306 55.000 0.00 0.00 0.00 3.71
2100 2115 0.676736 GGAGGCTATCGTTCTGGAGG 59.323 60.000 0.00 0.00 0.00 4.30
2101 2116 1.403814 TGGAGGCTATCGTTCTGGAG 58.596 55.000 0.00 0.00 0.00 3.86
2102 2117 1.964223 GATGGAGGCTATCGTTCTGGA 59.036 52.381 0.00 0.00 0.00 3.86
2103 2118 1.967066 AGATGGAGGCTATCGTTCTGG 59.033 52.381 0.00 0.00 0.00 3.86
2104 2119 2.625314 TGAGATGGAGGCTATCGTTCTG 59.375 50.000 0.00 0.00 0.00 3.02
2105 2120 2.950781 TGAGATGGAGGCTATCGTTCT 58.049 47.619 0.00 0.00 0.00 3.01
2106 2121 3.671971 CGATGAGATGGAGGCTATCGTTC 60.672 52.174 5.62 0.00 34.43 3.95
2107 2122 2.230025 CGATGAGATGGAGGCTATCGTT 59.770 50.000 5.62 0.00 34.43 3.85
2108 2123 1.815613 CGATGAGATGGAGGCTATCGT 59.184 52.381 5.62 0.00 34.43 3.73
2109 2124 2.087646 TCGATGAGATGGAGGCTATCG 58.912 52.381 7.14 7.14 38.86 2.92
2110 2125 4.219507 TCTTTCGATGAGATGGAGGCTATC 59.780 45.833 0.00 0.00 0.00 2.08
2111 2126 4.155709 TCTTTCGATGAGATGGAGGCTAT 58.844 43.478 0.00 0.00 0.00 2.97
2112 2127 3.566351 TCTTTCGATGAGATGGAGGCTA 58.434 45.455 0.00 0.00 0.00 3.93
2113 2128 2.392662 TCTTTCGATGAGATGGAGGCT 58.607 47.619 0.00 0.00 0.00 4.58
2114 2129 2.898729 TCTTTCGATGAGATGGAGGC 57.101 50.000 0.00 0.00 0.00 4.70
2124 2139 2.009774 GGTGTGTCCCATCTTTCGATG 58.990 52.381 0.00 0.00 45.31 3.84
2125 2140 1.909302 AGGTGTGTCCCATCTTTCGAT 59.091 47.619 0.00 0.00 26.38 3.59
2126 2141 1.348064 AGGTGTGTCCCATCTTTCGA 58.652 50.000 0.00 0.00 26.38 3.71
2127 2142 2.185004 AAGGTGTGTCCCATCTTTCG 57.815 50.000 0.00 0.00 41.93 3.46
2130 2145 1.620822 GCAAAGGTGTGTCCCATCTT 58.379 50.000 0.00 0.00 46.69 2.40
2131 2146 0.251341 GGCAAAGGTGTGTCCCATCT 60.251 55.000 0.00 0.00 35.45 2.90
2132 2147 0.251341 AGGCAAAGGTGTGTCCCATC 60.251 55.000 0.00 0.00 36.75 3.51
2133 2148 0.251341 GAGGCAAAGGTGTGTCCCAT 60.251 55.000 0.00 0.00 36.75 4.00
2134 2149 1.150536 GAGGCAAAGGTGTGTCCCA 59.849 57.895 0.00 0.00 36.75 4.37
2135 2150 0.690762 TAGAGGCAAAGGTGTGTCCC 59.309 55.000 0.00 0.00 36.75 4.46
2136 2151 2.027192 TGATAGAGGCAAAGGTGTGTCC 60.027 50.000 0.00 0.00 0.00 4.02
2137 2152 3.003480 GTGATAGAGGCAAAGGTGTGTC 58.997 50.000 0.00 0.00 0.00 3.67
2138 2153 2.290323 GGTGATAGAGGCAAAGGTGTGT 60.290 50.000 0.00 0.00 0.00 3.72
2139 2154 2.290260 TGGTGATAGAGGCAAAGGTGTG 60.290 50.000 0.00 0.00 0.00 3.82
2140 2155 1.985159 TGGTGATAGAGGCAAAGGTGT 59.015 47.619 0.00 0.00 0.00 4.16
2141 2156 2.787473 TGGTGATAGAGGCAAAGGTG 57.213 50.000 0.00 0.00 0.00 4.00
2142 2157 3.525199 AGATTGGTGATAGAGGCAAAGGT 59.475 43.478 0.00 0.00 0.00 3.50
2143 2158 4.162040 AGATTGGTGATAGAGGCAAAGG 57.838 45.455 0.00 0.00 0.00 3.11
2144 2159 4.201990 GCAAGATTGGTGATAGAGGCAAAG 60.202 45.833 0.00 0.00 0.00 2.77
2145 2160 3.696051 GCAAGATTGGTGATAGAGGCAAA 59.304 43.478 0.00 0.00 0.00 3.68
2146 2161 3.282021 GCAAGATTGGTGATAGAGGCAA 58.718 45.455 0.00 0.00 0.00 4.52
2147 2162 2.421952 GGCAAGATTGGTGATAGAGGCA 60.422 50.000 0.00 0.00 0.00 4.75
2148 2163 2.158696 AGGCAAGATTGGTGATAGAGGC 60.159 50.000 0.00 0.00 0.00 4.70
2149 2164 3.853355 AGGCAAGATTGGTGATAGAGG 57.147 47.619 0.00 0.00 0.00 3.69
2150 2165 4.133078 GGAAGGCAAGATTGGTGATAGAG 58.867 47.826 0.00 0.00 0.00 2.43
2151 2166 3.523157 TGGAAGGCAAGATTGGTGATAGA 59.477 43.478 0.00 0.00 0.00 1.98
2152 2167 3.629398 GTGGAAGGCAAGATTGGTGATAG 59.371 47.826 0.00 0.00 0.00 2.08
2153 2168 3.620488 GTGGAAGGCAAGATTGGTGATA 58.380 45.455 0.00 0.00 0.00 2.15
2154 2169 2.450476 GTGGAAGGCAAGATTGGTGAT 58.550 47.619 0.00 0.00 0.00 3.06
2155 2170 1.881925 CGTGGAAGGCAAGATTGGTGA 60.882 52.381 0.00 0.00 0.00 4.02
2156 2171 0.523072 CGTGGAAGGCAAGATTGGTG 59.477 55.000 0.00 0.00 0.00 4.17
2157 2172 2.946947 CGTGGAAGGCAAGATTGGT 58.053 52.632 0.00 0.00 0.00 3.67
2167 2182 0.035458 ACTCTCCTTTGCGTGGAAGG 59.965 55.000 7.12 7.12 44.06 3.46
2168 2183 1.433534 GACTCTCCTTTGCGTGGAAG 58.566 55.000 0.00 0.00 32.61 3.46
2169 2184 0.034896 GGACTCTCCTTTGCGTGGAA 59.965 55.000 0.00 0.00 32.53 3.53
2170 2185 0.832135 AGGACTCTCCTTTGCGTGGA 60.832 55.000 0.00 0.00 46.91 4.02
2171 2186 0.895530 TAGGACTCTCCTTTGCGTGG 59.104 55.000 0.00 0.00 46.91 4.94
2172 2187 2.482142 GGATAGGACTCTCCTTTGCGTG 60.482 54.545 0.00 0.00 46.91 5.34
2173 2188 1.757699 GGATAGGACTCTCCTTTGCGT 59.242 52.381 0.00 0.00 46.91 5.24
2174 2189 1.269309 CGGATAGGACTCTCCTTTGCG 60.269 57.143 7.92 7.92 46.91 4.85
2175 2190 2.032620 TCGGATAGGACTCTCCTTTGC 58.967 52.381 0.00 0.00 46.91 3.68
2176 2191 3.447586 TGTTCGGATAGGACTCTCCTTTG 59.552 47.826 0.00 0.00 46.91 2.77
2177 2192 3.447944 GTGTTCGGATAGGACTCTCCTTT 59.552 47.826 0.00 0.00 46.91 3.11
2178 2193 3.025262 GTGTTCGGATAGGACTCTCCTT 58.975 50.000 0.00 0.00 46.91 3.36
2180 2195 1.334243 CGTGTTCGGATAGGACTCTCC 59.666 57.143 0.00 0.00 36.58 3.71
2181 2196 2.759538 CGTGTTCGGATAGGACTCTC 57.240 55.000 0.00 0.00 0.00 3.20
2203 2218 7.930325 GTAAATATACAAGGTAGAAGACCACCC 59.070 40.741 0.00 0.00 40.20 4.61
2204 2219 7.650903 CGTAAATATACAAGGTAGAAGACCACC 59.349 40.741 0.00 0.00 40.20 4.61
2205 2220 7.650903 CCGTAAATATACAAGGTAGAAGACCAC 59.349 40.741 0.00 0.00 40.20 4.16
2206 2221 7.685155 GCCGTAAATATACAAGGTAGAAGACCA 60.685 40.741 0.00 0.00 40.20 4.02
2207 2222 6.644181 GCCGTAAATATACAAGGTAGAAGACC 59.356 42.308 0.00 0.00 39.05 3.85
2208 2223 6.644181 GGCCGTAAATATACAAGGTAGAAGAC 59.356 42.308 0.00 0.00 32.02 3.01
2209 2224 6.239402 GGGCCGTAAATATACAAGGTAGAAGA 60.239 42.308 0.00 0.00 32.02 2.87
2210 2225 5.930569 GGGCCGTAAATATACAAGGTAGAAG 59.069 44.000 0.00 0.00 32.02 2.85
2211 2226 5.366186 TGGGCCGTAAATATACAAGGTAGAA 59.634 40.000 0.00 0.00 32.02 2.10
2212 2227 4.900652 TGGGCCGTAAATATACAAGGTAGA 59.099 41.667 0.00 0.00 32.02 2.59
2213 2228 4.992951 GTGGGCCGTAAATATACAAGGTAG 59.007 45.833 0.00 0.00 32.02 3.18
2214 2229 4.202346 GGTGGGCCGTAAATATACAAGGTA 60.202 45.833 0.00 0.00 32.02 3.08
2215 2230 3.434024 GGTGGGCCGTAAATATACAAGGT 60.434 47.826 0.00 0.00 32.02 3.50
2216 2231 3.143728 GGTGGGCCGTAAATATACAAGG 58.856 50.000 0.00 0.00 32.02 3.61
2217 2232 3.811083 TGGTGGGCCGTAAATATACAAG 58.189 45.455 0.00 0.00 37.67 3.16
2218 2233 3.200385 ACTGGTGGGCCGTAAATATACAA 59.800 43.478 0.00 0.00 37.67 2.41
2219 2234 2.773087 ACTGGTGGGCCGTAAATATACA 59.227 45.455 0.00 0.00 37.67 2.29
2220 2235 3.070590 AGACTGGTGGGCCGTAAATATAC 59.929 47.826 0.00 0.00 37.67 1.47
2221 2236 3.070446 CAGACTGGTGGGCCGTAAATATA 59.930 47.826 0.00 0.00 37.67 0.86
2222 2237 2.124411 AGACTGGTGGGCCGTAAATAT 58.876 47.619 0.00 0.00 37.67 1.28
2223 2238 1.208535 CAGACTGGTGGGCCGTAAATA 59.791 52.381 0.00 0.00 37.67 1.40
2224 2239 0.035439 CAGACTGGTGGGCCGTAAAT 60.035 55.000 0.00 0.00 37.67 1.40
2225 2240 1.373435 CAGACTGGTGGGCCGTAAA 59.627 57.895 0.00 0.00 37.67 2.01
2226 2241 2.589157 CCAGACTGGTGGGCCGTAA 61.589 63.158 13.84 0.00 37.67 3.18
2227 2242 3.000819 CCAGACTGGTGGGCCGTA 61.001 66.667 13.84 0.00 37.67 4.02
2232 2247 1.570857 TTATGGGCCAGACTGGTGGG 61.571 60.000 22.58 0.00 40.46 4.61
2233 2248 0.394352 GTTATGGGCCAGACTGGTGG 60.394 60.000 22.58 0.00 40.46 4.61
2234 2249 0.327924 TGTTATGGGCCAGACTGGTG 59.672 55.000 22.58 0.00 40.46 4.17
2235 2250 0.328258 GTGTTATGGGCCAGACTGGT 59.672 55.000 22.58 5.47 40.46 4.00
2236 2251 0.327924 TGTGTTATGGGCCAGACTGG 59.672 55.000 17.83 17.83 41.55 4.00
2237 2252 2.019249 CATGTGTTATGGGCCAGACTG 58.981 52.381 13.78 4.43 0.00 3.51
2238 2253 1.064463 CCATGTGTTATGGGCCAGACT 60.064 52.381 13.78 0.00 35.58 3.24
2239 2254 1.392589 CCATGTGTTATGGGCCAGAC 58.607 55.000 13.78 13.99 35.58 3.51
2240 2255 0.395586 GCCATGTGTTATGGGCCAGA 60.396 55.000 13.78 3.79 40.55 3.86
2241 2256 2.118132 GCCATGTGTTATGGGCCAG 58.882 57.895 13.78 0.00 40.55 4.85
2242 2257 4.353325 GCCATGTGTTATGGGCCA 57.647 55.556 9.61 9.61 40.55 5.36
2245 2260 1.827789 CCGGGCCATGTGTTATGGG 60.828 63.158 4.39 0.00 39.53 4.00
2246 2261 1.101049 GTCCGGGCCATGTGTTATGG 61.101 60.000 4.39 1.59 41.99 2.74
2247 2262 0.393673 TGTCCGGGCCATGTGTTATG 60.394 55.000 2.12 0.00 0.00 1.90
2248 2263 0.550914 ATGTCCGGGCCATGTGTTAT 59.449 50.000 2.12 0.00 0.00 1.89
2249 2264 0.107410 GATGTCCGGGCCATGTGTTA 60.107 55.000 2.12 0.00 0.00 2.41
2250 2265 1.378514 GATGTCCGGGCCATGTGTT 60.379 57.895 2.12 0.00 0.00 3.32
2251 2266 2.272146 GATGTCCGGGCCATGTGT 59.728 61.111 2.12 0.00 0.00 3.72
2252 2267 2.516930 GGATGTCCGGGCCATGTG 60.517 66.667 2.12 0.00 0.00 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.