Multiple sequence alignment - TraesCS4A01G148900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G148900 chr4A 100.000 2683 0 0 1 2683 281594836 281592154 0.000000e+00 4955.0
1 TraesCS4A01G148900 chr4A 92.694 219 16 0 2464 2682 78653787 78654005 1.550000e-82 316.0
2 TraesCS4A01G148900 chr4A 82.553 235 27 9 69 291 730354189 730354421 7.580000e-46 195.0
3 TraesCS4A01G148900 chr2A 95.685 1460 57 3 1008 2462 441110087 441111545 0.000000e+00 2342.0
4 TraesCS4A01G148900 chr2A 97.143 875 22 3 137 1009 441107857 441108730 0.000000e+00 1474.0
5 TraesCS4A01G148900 chr7D 94.687 1468 59 6 1008 2467 635929354 635927898 0.000000e+00 2261.0
6 TraesCS4A01G148900 chr7D 91.371 985 46 16 41 1009 635931665 635930704 0.000000e+00 1312.0
7 TraesCS4A01G148900 chr1D 95.178 1431 62 3 1038 2462 235547381 235545952 0.000000e+00 2254.0
8 TraesCS4A01G148900 chr1D 92.547 322 22 2 1 321 235549437 235549117 6.770000e-126 460.0
9 TraesCS4A01G148900 chr5D 94.464 1445 65 6 1032 2469 462908053 462909489 0.000000e+00 2211.0
10 TraesCS4A01G148900 chr5D 85.210 595 55 10 288 866 500489139 500489716 4.980000e-162 580.0
11 TraesCS4A01G148900 chr5D 91.781 219 18 0 2464 2682 120033856 120034074 3.360000e-79 305.0
12 TraesCS4A01G148900 chr5D 92.105 152 9 2 861 1009 500489759 500489910 7.530000e-51 211.0
13 TraesCS4A01G148900 chr5B 94.049 1462 72 9 1008 2462 89745394 89746847 0.000000e+00 2204.0
14 TraesCS4A01G148900 chr5B 87.709 716 55 8 1 700 89692204 89692902 0.000000e+00 804.0
15 TraesCS4A01G148900 chr5B 83.850 613 57 18 281 866 622037716 622038313 1.820000e-151 545.0
16 TraesCS4A01G148900 chr5B 92.193 269 9 2 702 969 89741486 89741743 1.170000e-98 370.0
17 TraesCS4A01G148900 chr7A 93.006 1444 82 8 1032 2462 439031258 439032695 0.000000e+00 2089.0
18 TraesCS4A01G148900 chr7A 93.176 1143 57 6 1035 2160 639884719 639883581 0.000000e+00 1659.0
19 TraesCS4A01G148900 chr2B 92.981 1439 87 5 1032 2462 13184191 13185623 0.000000e+00 2085.0
20 TraesCS4A01G148900 chr2B 91.049 324 26 3 1 321 13182055 13182378 4.100000e-118 435.0
21 TraesCS4A01G148900 chr1B 92.664 1445 70 13 1035 2462 253825269 253823844 0.000000e+00 2049.0
22 TraesCS4A01G148900 chr1B 93.161 775 37 5 250 1009 578101457 578102230 0.000000e+00 1123.0
23 TraesCS4A01G148900 chr1B 91.304 92 6 2 137 226 578101022 578101113 1.010000e-24 124.0
24 TraesCS4A01G148900 chr3D 95.190 1081 39 6 1035 2109 143483157 143482084 0.000000e+00 1696.0
25 TraesCS4A01G148900 chr3D 92.237 219 17 0 2464 2682 283988834 283988616 7.210000e-81 311.0
26 TraesCS4A01G148900 chr3D 92.130 216 17 0 2464 2679 151530697 151530912 3.360000e-79 305.0
27 TraesCS4A01G148900 chr3D 85.185 81 11 1 1 80 318681636 318681716 6.160000e-12 82.4
28 TraesCS4A01G148900 chr7B 93.241 1006 49 9 1468 2462 634824607 634825604 0.000000e+00 1463.0
29 TraesCS4A01G148900 chr7B 88.583 254 22 6 71 321 332858206 332857957 4.340000e-78 302.0
30 TraesCS4A01G148900 chr6D 93.757 929 51 3 1414 2342 298130733 298129812 0.000000e+00 1387.0
31 TraesCS4A01G148900 chr5A 81.488 578 48 24 326 866 626989348 626989903 1.150000e-113 420.0
32 TraesCS4A01G148900 chr2D 92.237 219 17 0 2464 2682 176384876 176384658 7.210000e-81 311.0
33 TraesCS4A01G148900 chr2D 91.818 220 18 0 2464 2683 293638187 293637968 9.330000e-80 307.0
34 TraesCS4A01G148900 chr4D 91.818 220 17 1 2464 2682 213784629 213784410 3.360000e-79 305.0
35 TraesCS4A01G148900 chr4D 91.781 219 18 0 2464 2682 283101396 283101614 3.360000e-79 305.0
36 TraesCS4A01G148900 chr4D 91.781 219 18 0 2464 2682 301917449 301917231 3.360000e-79 305.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G148900 chr4A 281592154 281594836 2682 True 4955.0 4955 100.0000 1 2683 1 chr4A.!!$R1 2682
1 TraesCS4A01G148900 chr2A 441107857 441111545 3688 False 1908.0 2342 96.4140 137 2462 2 chr2A.!!$F1 2325
2 TraesCS4A01G148900 chr7D 635927898 635931665 3767 True 1786.5 2261 93.0290 41 2467 2 chr7D.!!$R1 2426
3 TraesCS4A01G148900 chr1D 235545952 235549437 3485 True 1357.0 2254 93.8625 1 2462 2 chr1D.!!$R1 2461
4 TraesCS4A01G148900 chr5D 462908053 462909489 1436 False 2211.0 2211 94.4640 1032 2469 1 chr5D.!!$F2 1437
5 TraesCS4A01G148900 chr5D 500489139 500489910 771 False 395.5 580 88.6575 288 1009 2 chr5D.!!$F3 721
6 TraesCS4A01G148900 chr5B 89741486 89746847 5361 False 1287.0 2204 93.1210 702 2462 2 chr5B.!!$F3 1760
7 TraesCS4A01G148900 chr5B 89692204 89692902 698 False 804.0 804 87.7090 1 700 1 chr5B.!!$F1 699
8 TraesCS4A01G148900 chr5B 622037716 622038313 597 False 545.0 545 83.8500 281 866 1 chr5B.!!$F2 585
9 TraesCS4A01G148900 chr7A 439031258 439032695 1437 False 2089.0 2089 93.0060 1032 2462 1 chr7A.!!$F1 1430
10 TraesCS4A01G148900 chr7A 639883581 639884719 1138 True 1659.0 1659 93.1760 1035 2160 1 chr7A.!!$R1 1125
11 TraesCS4A01G148900 chr2B 13182055 13185623 3568 False 1260.0 2085 92.0150 1 2462 2 chr2B.!!$F1 2461
12 TraesCS4A01G148900 chr1B 253823844 253825269 1425 True 2049.0 2049 92.6640 1035 2462 1 chr1B.!!$R1 1427
13 TraesCS4A01G148900 chr1B 578101022 578102230 1208 False 623.5 1123 92.2325 137 1009 2 chr1B.!!$F1 872
14 TraesCS4A01G148900 chr3D 143482084 143483157 1073 True 1696.0 1696 95.1900 1035 2109 1 chr3D.!!$R1 1074
15 TraesCS4A01G148900 chr7B 634824607 634825604 997 False 1463.0 1463 93.2410 1468 2462 1 chr7B.!!$F1 994
16 TraesCS4A01G148900 chr6D 298129812 298130733 921 True 1387.0 1387 93.7570 1414 2342 1 chr6D.!!$R1 928
17 TraesCS4A01G148900 chr5A 626989348 626989903 555 False 420.0 420 81.4880 326 866 1 chr5A.!!$F1 540

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
546 1024 0.610687 CCCTTCGAGTCTTCAGCCTT 59.389 55.0 0.0 0.0 0.0 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1942 7175 0.10412 ATCATCGATTTCCGGCGTCA 59.896 50.0 6.01 0.0 39.14 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 1.465387 CCAATAGCGCGTGGTACAAAA 59.535 47.619 10.48 0.00 44.16 2.44
55 56 0.970640 TGGCTTACCAGTAGCGTTGA 59.029 50.000 0.00 0.00 42.67 3.18
59 60 3.439129 GGCTTACCAGTAGCGTTGATTTT 59.561 43.478 0.00 0.00 35.26 1.82
60 61 4.403453 GCTTACCAGTAGCGTTGATTTTG 58.597 43.478 0.00 0.00 0.00 2.44
63 64 4.223320 ACCAGTAGCGTTGATTTTGTTG 57.777 40.909 0.00 0.00 0.00 3.33
66 67 2.030274 AGTAGCGTTGATTTTGTTGGGC 60.030 45.455 0.00 0.00 0.00 5.36
67 68 0.749649 AGCGTTGATTTTGTTGGGCA 59.250 45.000 0.00 0.00 0.00 5.36
68 69 0.858583 GCGTTGATTTTGTTGGGCAC 59.141 50.000 0.00 0.00 0.00 5.01
69 70 1.804372 GCGTTGATTTTGTTGGGCACA 60.804 47.619 0.00 0.00 0.00 4.57
70 71 1.857837 CGTTGATTTTGTTGGGCACAC 59.142 47.619 0.00 0.00 33.98 3.82
71 72 2.481104 CGTTGATTTTGTTGGGCACACT 60.481 45.455 0.00 0.00 33.98 3.55
72 73 3.243234 CGTTGATTTTGTTGGGCACACTA 60.243 43.478 0.00 0.00 33.98 2.74
73 74 4.558496 CGTTGATTTTGTTGGGCACACTAT 60.558 41.667 0.00 0.00 33.98 2.12
99 103 7.589958 AGTAAATATCTCTCGTGGACAAGAT 57.410 36.000 0.00 0.00 33.27 2.40
167 171 1.202417 GCTATAGCGCAGGTGAGACAA 60.202 52.381 11.47 0.00 40.22 3.18
444 920 4.671590 TCACCGCCTCCACCGAGA 62.672 66.667 0.00 0.00 38.52 4.04
484 960 0.818296 ATCGACCTCTCCAACGAAGG 59.182 55.000 0.00 0.00 38.22 3.46
546 1024 0.610687 CCCTTCGAGTCTTCAGCCTT 59.389 55.000 0.00 0.00 0.00 4.35
561 1039 2.674958 CCTTTGGGCCAGCAAGAAT 58.325 52.632 17.64 0.00 0.00 2.40
582 1061 0.897863 TTTGTTGATTGGGAGGCCGG 60.898 55.000 0.00 0.00 0.00 6.13
1154 6369 3.839490 TCATTTGGATCCAATGTTGCCTT 59.161 39.130 27.53 3.42 35.70 4.35
1204 6419 7.138736 TGCTTCAGCTTTTATTTGTGAACTAC 58.861 34.615 0.00 0.00 42.66 2.73
1319 6534 3.026694 AGAAAAAGAAGTGCAAGGCTGT 58.973 40.909 0.00 0.00 0.00 4.40
1600 6816 8.286800 TGTTGTTACCAAATAGATCACTTTTCG 58.713 33.333 0.00 0.00 30.94 3.46
1811 7033 6.314400 TGCGTACTAACAAGTTTTCACTTTCT 59.686 34.615 0.00 0.00 40.66 2.52
1871 7104 3.730761 GGTGGCGCTGTGCTCTTG 61.731 66.667 13.46 0.00 45.43 3.02
1894 7127 1.604023 ACTCAGAGGCGGACTTCGT 60.604 57.895 1.53 0.00 41.72 3.85
1942 7175 4.194640 CAGATGATCGTCCAGGTGATTTT 58.805 43.478 11.42 0.00 0.00 1.82
1953 7186 0.594110 GGTGATTTTGACGCCGGAAA 59.406 50.000 5.05 0.00 0.00 3.13
2036 7269 4.113354 CGTCTGAATTCCTAGCCTTGTAC 58.887 47.826 2.27 0.00 0.00 2.90
2056 7289 6.432581 TGTACATACATCTAGAGAGGTGGTT 58.567 40.000 7.09 0.00 39.59 3.67
2182 7427 5.351233 TTTGTTTGCACTGGACGTATTAG 57.649 39.130 0.00 0.00 0.00 1.73
2254 7513 0.107831 CGTGGGTCAAAAGTGAGGGA 59.892 55.000 0.00 0.00 33.27 4.20
2305 7564 4.142071 GGGTTTTAGGTTAGTAGTAGCGCT 60.142 45.833 17.26 17.26 0.00 5.92
2320 7579 4.962122 GCTGGTGCACACGCGTTG 62.962 66.667 20.43 13.03 42.97 4.10
2342 7601 9.298774 CGTTGCTACTAACTTTTTAGCTATAGT 57.701 33.333 0.84 7.43 38.71 2.12
2423 7683 1.212375 ACCCATGCTACTGGTATGCA 58.788 50.000 0.00 0.00 41.13 3.96
2462 7725 7.370905 ACTGGTAGTGTTTTTCCTAGTAGTT 57.629 36.000 0.00 0.00 0.00 2.24
2467 7730 6.511017 AGTGTTTTTCCTAGTAGTTCCCTT 57.489 37.500 0.00 0.00 0.00 3.95
2468 7731 6.296803 AGTGTTTTTCCTAGTAGTTCCCTTG 58.703 40.000 0.00 0.00 0.00 3.61
2469 7732 5.048921 GTGTTTTTCCTAGTAGTTCCCTTGC 60.049 44.000 0.00 0.00 0.00 4.01
2470 7733 3.604875 TTTCCTAGTAGTTCCCTTGCG 57.395 47.619 0.00 0.00 0.00 4.85
2471 7734 2.519771 TCCTAGTAGTTCCCTTGCGA 57.480 50.000 0.00 0.00 0.00 5.10
2472 7735 2.376109 TCCTAGTAGTTCCCTTGCGAG 58.624 52.381 0.00 0.00 0.00 5.03
2473 7736 1.409427 CCTAGTAGTTCCCTTGCGAGG 59.591 57.143 13.75 13.75 43.15 4.63
2499 7762 4.717629 CTTGCGAGGCGGACGACA 62.718 66.667 0.00 1.82 0.00 4.35
2503 7766 2.805353 CGAGGCGGACGACACAAG 60.805 66.667 0.00 0.00 0.00 3.16
2504 7767 2.649034 GAGGCGGACGACACAAGA 59.351 61.111 0.00 0.00 0.00 3.02
2505 7768 1.733399 GAGGCGGACGACACAAGAC 60.733 63.158 0.00 0.00 0.00 3.01
2506 7769 2.737376 GGCGGACGACACAAGACC 60.737 66.667 0.00 0.00 0.00 3.85
2507 7770 2.338984 GCGGACGACACAAGACCT 59.661 61.111 0.00 0.00 0.00 3.85
2508 7771 1.733399 GCGGACGACACAAGACCTC 60.733 63.158 0.00 0.00 0.00 3.85
2509 7772 1.080705 CGGACGACACAAGACCTCC 60.081 63.158 0.00 0.00 0.00 4.30
2510 7773 1.524863 CGGACGACACAAGACCTCCT 61.525 60.000 0.00 0.00 0.00 3.69
2511 7774 0.244178 GGACGACACAAGACCTCCTC 59.756 60.000 0.00 0.00 0.00 3.71
2512 7775 0.959553 GACGACACAAGACCTCCTCA 59.040 55.000 0.00 0.00 0.00 3.86
2513 7776 0.962489 ACGACACAAGACCTCCTCAG 59.038 55.000 0.00 0.00 0.00 3.35
2514 7777 0.244994 CGACACAAGACCTCCTCAGG 59.755 60.000 0.00 0.00 46.87 3.86
2515 7778 0.610687 GACACAAGACCTCCTCAGGG 59.389 60.000 0.00 0.00 45.53 4.45
2516 7779 0.838122 ACACAAGACCTCCTCAGGGG 60.838 60.000 0.00 0.00 45.53 4.79
2517 7780 1.920835 ACAAGACCTCCTCAGGGGC 60.921 63.158 0.00 0.00 45.53 5.80
2518 7781 1.920325 CAAGACCTCCTCAGGGGCA 60.920 63.158 0.00 0.00 45.53 5.36
2519 7782 1.614824 AAGACCTCCTCAGGGGCAG 60.615 63.158 0.00 0.00 45.53 4.85
2520 7783 3.791586 GACCTCCTCAGGGGCAGC 61.792 72.222 0.00 0.00 45.53 5.25
2521 7784 4.345286 ACCTCCTCAGGGGCAGCT 62.345 66.667 0.00 0.00 45.53 4.24
2522 7785 3.013932 CCTCCTCAGGGGCAGCTT 61.014 66.667 0.00 0.00 35.89 3.74
2523 7786 2.588989 CTCCTCAGGGGCAGCTTC 59.411 66.667 0.00 0.00 34.39 3.86
2524 7787 2.203983 TCCTCAGGGGCAGCTTCA 60.204 61.111 0.00 0.00 34.39 3.02
2525 7788 2.045536 CCTCAGGGGCAGCTTCAC 60.046 66.667 0.00 0.00 0.00 3.18
2526 7789 2.045536 CTCAGGGGCAGCTTCACC 60.046 66.667 0.00 0.00 0.00 4.02
2527 7790 2.853542 TCAGGGGCAGCTTCACCA 60.854 61.111 7.60 0.00 0.00 4.17
2528 7791 2.360852 CAGGGGCAGCTTCACCAG 60.361 66.667 7.60 0.00 0.00 4.00
2529 7792 3.655211 AGGGGCAGCTTCACCAGG 61.655 66.667 7.60 0.00 0.00 4.45
2531 7794 4.666253 GGGCAGCTTCACCAGGCA 62.666 66.667 0.00 0.00 0.00 4.75
2532 7795 3.060615 GGCAGCTTCACCAGGCAG 61.061 66.667 0.00 0.00 0.00 4.85
2533 7796 3.060615 GCAGCTTCACCAGGCAGG 61.061 66.667 0.00 0.00 45.67 4.85
2534 7797 3.060615 CAGCTTCACCAGGCAGGC 61.061 66.667 0.00 0.00 43.14 4.85
2535 7798 3.255397 AGCTTCACCAGGCAGGCT 61.255 61.111 0.00 0.00 43.14 4.58
2536 7799 1.920325 AGCTTCACCAGGCAGGCTA 60.920 57.895 0.00 0.00 43.14 3.93
2537 7800 1.451028 GCTTCACCAGGCAGGCTAG 60.451 63.158 0.00 0.00 43.14 3.42
2538 7801 1.451028 CTTCACCAGGCAGGCTAGC 60.451 63.158 6.04 6.04 43.14 3.42
2539 7802 3.315142 TTCACCAGGCAGGCTAGCG 62.315 63.158 9.00 0.00 43.14 4.26
2540 7803 3.774528 CACCAGGCAGGCTAGCGA 61.775 66.667 9.00 0.00 43.14 4.93
2541 7804 3.465403 ACCAGGCAGGCTAGCGAG 61.465 66.667 9.00 4.56 43.14 5.03
2542 7805 4.232878 CCAGGCAGGCTAGCGAGG 62.233 72.222 9.00 1.37 34.64 4.63
2543 7806 4.232878 CAGGCAGGCTAGCGAGGG 62.233 72.222 9.00 0.00 34.64 4.30
2554 7817 2.733945 GCGAGGGCTGGAGAGATC 59.266 66.667 0.00 0.00 35.83 2.75
2555 7818 2.130426 GCGAGGGCTGGAGAGATCA 61.130 63.158 0.00 0.00 35.83 2.92
2556 7819 1.680522 GCGAGGGCTGGAGAGATCAA 61.681 60.000 0.00 0.00 35.83 2.57
2557 7820 0.388659 CGAGGGCTGGAGAGATCAAG 59.611 60.000 0.00 0.00 0.00 3.02
2558 7821 0.758123 GAGGGCTGGAGAGATCAAGG 59.242 60.000 0.00 0.00 0.00 3.61
2559 7822 1.148048 GGGCTGGAGAGATCAAGGC 59.852 63.158 0.00 0.00 0.00 4.35
2560 7823 1.630126 GGGCTGGAGAGATCAAGGCA 61.630 60.000 8.30 0.00 0.00 4.75
2561 7824 0.254178 GGCTGGAGAGATCAAGGCAA 59.746 55.000 1.57 0.00 0.00 4.52
2562 7825 1.666054 GCTGGAGAGATCAAGGCAAG 58.334 55.000 0.00 0.00 0.00 4.01
2563 7826 1.746516 GCTGGAGAGATCAAGGCAAGG 60.747 57.143 0.00 0.00 0.00 3.61
2564 7827 0.914644 TGGAGAGATCAAGGCAAGGG 59.085 55.000 0.00 0.00 0.00 3.95
2565 7828 1.207791 GGAGAGATCAAGGCAAGGGA 58.792 55.000 0.00 0.00 0.00 4.20
2566 7829 1.134250 GGAGAGATCAAGGCAAGGGAC 60.134 57.143 0.00 0.00 0.00 4.46
2567 7830 1.556911 GAGAGATCAAGGCAAGGGACA 59.443 52.381 0.00 0.00 0.00 4.02
2568 7831 1.280421 AGAGATCAAGGCAAGGGACAC 59.720 52.381 0.00 0.00 0.00 3.67
2569 7832 0.329596 AGATCAAGGCAAGGGACACC 59.670 55.000 0.00 0.00 0.00 4.16
2585 7848 3.043419 CCTCGCGAGGTCCCTATG 58.957 66.667 40.77 17.62 43.61 2.23
2586 7849 1.528542 CCTCGCGAGGTCCCTATGA 60.529 63.158 40.77 0.75 43.61 2.15
2587 7850 1.655329 CTCGCGAGGTCCCTATGAC 59.345 63.158 28.40 0.00 43.67 3.06
2588 7851 1.077285 TCGCGAGGTCCCTATGACA 60.077 57.895 3.71 0.00 46.38 3.58
2589 7852 1.065928 CGCGAGGTCCCTATGACAC 59.934 63.158 0.00 0.00 46.38 3.67
2590 7853 1.663379 CGCGAGGTCCCTATGACACA 61.663 60.000 0.00 0.00 46.38 3.72
2591 7854 0.535335 GCGAGGTCCCTATGACACAA 59.465 55.000 0.00 0.00 46.38 3.33
2592 7855 1.471676 GCGAGGTCCCTATGACACAAG 60.472 57.143 0.00 0.00 46.38 3.16
2593 7856 1.471676 CGAGGTCCCTATGACACAAGC 60.472 57.143 0.00 0.00 46.38 4.01
2594 7857 0.912486 AGGTCCCTATGACACAAGCC 59.088 55.000 0.00 0.00 46.38 4.35
2595 7858 0.618458 GGTCCCTATGACACAAGCCA 59.382 55.000 0.00 0.00 46.38 4.75
2596 7859 1.212935 GGTCCCTATGACACAAGCCAT 59.787 52.381 0.00 0.00 46.38 4.40
2597 7860 2.292267 GTCCCTATGACACAAGCCATG 58.708 52.381 0.00 0.00 43.85 3.66
2598 7861 2.092968 GTCCCTATGACACAAGCCATGA 60.093 50.000 0.00 0.00 43.85 3.07
2599 7862 2.092968 TCCCTATGACACAAGCCATGAC 60.093 50.000 0.00 0.00 0.00 3.06
2600 7863 1.935873 CCTATGACACAAGCCATGACG 59.064 52.381 0.00 0.00 0.00 4.35
2601 7864 2.418609 CCTATGACACAAGCCATGACGA 60.419 50.000 0.00 0.00 0.00 4.20
2602 7865 1.442769 ATGACACAAGCCATGACGAC 58.557 50.000 0.00 0.00 0.00 4.34
2603 7866 0.392706 TGACACAAGCCATGACGACT 59.607 50.000 0.00 0.00 0.00 4.18
2604 7867 0.792640 GACACAAGCCATGACGACTG 59.207 55.000 0.00 0.00 0.00 3.51
2605 7868 0.603707 ACACAAGCCATGACGACTGG 60.604 55.000 0.00 0.00 36.81 4.00
2610 7873 4.758251 CCATGACGACTGGCGCCA 62.758 66.667 30.59 30.59 46.04 5.69
2642 7905 3.036084 CGCGCAGTGTCCTCGTTT 61.036 61.111 8.75 0.00 0.00 3.60
2643 7906 2.853914 GCGCAGTGTCCTCGTTTC 59.146 61.111 0.30 0.00 0.00 2.78
2644 7907 2.668280 GCGCAGTGTCCTCGTTTCC 61.668 63.158 0.30 0.00 0.00 3.13
2645 7908 1.006102 CGCAGTGTCCTCGTTTCCT 60.006 57.895 0.00 0.00 0.00 3.36
2646 7909 0.600255 CGCAGTGTCCTCGTTTCCTT 60.600 55.000 0.00 0.00 0.00 3.36
2647 7910 1.594331 GCAGTGTCCTCGTTTCCTTT 58.406 50.000 0.00 0.00 0.00 3.11
2648 7911 1.947456 GCAGTGTCCTCGTTTCCTTTT 59.053 47.619 0.00 0.00 0.00 2.27
2649 7912 2.357952 GCAGTGTCCTCGTTTCCTTTTT 59.642 45.455 0.00 0.00 0.00 1.94
2650 7913 3.792124 GCAGTGTCCTCGTTTCCTTTTTG 60.792 47.826 0.00 0.00 0.00 2.44
2651 7914 2.949644 AGTGTCCTCGTTTCCTTTTTGG 59.050 45.455 0.00 0.00 37.10 3.28
2652 7915 2.686405 GTGTCCTCGTTTCCTTTTTGGT 59.314 45.455 0.00 0.00 37.07 3.67
2653 7916 2.685897 TGTCCTCGTTTCCTTTTTGGTG 59.314 45.455 0.00 0.00 37.07 4.17
2654 7917 1.679153 TCCTCGTTTCCTTTTTGGTGC 59.321 47.619 0.00 0.00 37.07 5.01
2655 7918 1.681264 CCTCGTTTCCTTTTTGGTGCT 59.319 47.619 0.00 0.00 37.07 4.40
2656 7919 2.882137 CCTCGTTTCCTTTTTGGTGCTA 59.118 45.455 0.00 0.00 37.07 3.49
2657 7920 3.316868 CCTCGTTTCCTTTTTGGTGCTAA 59.683 43.478 0.00 0.00 37.07 3.09
2658 7921 4.202070 CCTCGTTTCCTTTTTGGTGCTAAA 60.202 41.667 0.00 0.00 37.07 1.85
2659 7922 4.927422 TCGTTTCCTTTTTGGTGCTAAAG 58.073 39.130 0.00 0.00 37.07 1.85
2660 7923 4.641094 TCGTTTCCTTTTTGGTGCTAAAGA 59.359 37.500 0.00 0.00 34.11 2.52
2661 7924 4.976116 CGTTTCCTTTTTGGTGCTAAAGAG 59.024 41.667 0.00 0.00 34.11 2.85
2662 7925 5.289595 GTTTCCTTTTTGGTGCTAAAGAGG 58.710 41.667 10.10 10.10 41.10 3.69
2663 7926 2.890945 TCCTTTTTGGTGCTAAAGAGGC 59.109 45.455 11.12 0.00 40.12 4.70
2664 7927 2.627699 CCTTTTTGGTGCTAAAGAGGCA 59.372 45.455 5.05 0.00 35.81 4.75
2665 7928 3.069443 CCTTTTTGGTGCTAAAGAGGCAA 59.931 43.478 5.05 0.00 41.54 4.52
2666 7929 4.301628 CTTTTTGGTGCTAAAGAGGCAAG 58.698 43.478 0.00 0.00 41.54 4.01
2667 7930 1.247567 TTGGTGCTAAAGAGGCAAGC 58.752 50.000 0.00 0.00 41.54 4.01
2668 7931 0.955428 TGGTGCTAAAGAGGCAAGCG 60.955 55.000 0.00 0.00 41.54 4.68
2669 7932 1.135523 GTGCTAAAGAGGCAAGCGC 59.864 57.895 0.00 0.00 41.54 5.92
2670 7933 2.390599 TGCTAAAGAGGCAAGCGCG 61.391 57.895 0.00 0.00 39.14 6.86
2671 7934 3.093278 CTAAAGAGGCAAGCGCGG 58.907 61.111 8.83 0.00 39.92 6.46
2672 7935 2.435938 TAAAGAGGCAAGCGCGGG 60.436 61.111 8.83 0.00 39.92 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 0.717224 CGTTTTGTACCACGCGCTAT 59.283 50.000 5.73 0.00 0.00 2.97
22 23 0.902531 AAGCCATACCAGTAGTGCGT 59.097 50.000 0.00 0.00 0.00 5.24
55 56 7.768807 TTACTAATAGTGTGCCCAACAAAAT 57.231 32.000 2.68 0.00 41.57 1.82
59 60 8.491134 AGATATTTACTAATAGTGTGCCCAACA 58.509 33.333 2.68 0.00 31.00 3.33
60 61 8.904099 AGATATTTACTAATAGTGTGCCCAAC 57.096 34.615 2.68 0.00 30.10 3.77
63 64 7.755822 CGAGAGATATTTACTAATAGTGTGCCC 59.244 40.741 2.68 0.00 30.10 5.36
66 67 9.613957 CCACGAGAGATATTTACTAATAGTGTG 57.386 37.037 2.68 0.00 30.10 3.82
67 68 9.570468 TCCACGAGAGATATTTACTAATAGTGT 57.430 33.333 2.68 0.00 30.10 3.55
68 69 9.828852 GTCCACGAGAGATATTTACTAATAGTG 57.171 37.037 2.68 0.00 30.10 2.74
69 70 9.570468 TGTCCACGAGAGATATTTACTAATAGT 57.430 33.333 0.00 0.00 30.10 2.12
72 73 9.132923 TCTTGTCCACGAGAGATATTTACTAAT 57.867 33.333 0.00 0.00 32.77 1.73
73 74 8.515695 TCTTGTCCACGAGAGATATTTACTAA 57.484 34.615 0.00 0.00 32.77 2.24
99 103 7.385752 GGTTTTACAACATGCACTACTACTACA 59.614 37.037 0.00 0.00 34.15 2.74
167 171 0.396278 GGGGTAGTAGTAGCGTGGGT 60.396 60.000 0.83 0.00 0.00 4.51
231 239 1.310933 GGGTGAGGTCGCGAGAGTTA 61.311 60.000 10.24 0.00 43.49 2.24
444 920 2.280592 GGTGTCGGCGGTGTTCTT 60.281 61.111 7.21 0.00 0.00 2.52
546 1024 2.172293 ACAAAAATTCTTGCTGGCCCAA 59.828 40.909 0.00 0.00 0.00 4.12
561 1039 1.342819 CGGCCTCCCAATCAACAAAAA 59.657 47.619 0.00 0.00 0.00 1.94
600 1097 3.131223 GCTTGCTCCTGTACATCAGACTA 59.869 47.826 0.00 0.00 46.27 2.59
1204 6419 9.151471 TGGAAGTTCTCTTAGAATATTTTGTCG 57.849 33.333 2.25 0.00 36.50 4.35
1319 6534 5.977489 TTCAAGATGAGTCTCGACCTTAA 57.023 39.130 0.00 0.00 32.15 1.85
1445 6660 6.183361 ACCCTTCATATGAATCCGACCAAATA 60.183 38.462 18.26 0.00 33.01 1.40
1600 6816 6.151817 AGTCAACTTCTCATTTCTAAATGGCC 59.848 38.462 13.89 0.00 44.51 5.36
1811 7033 1.305297 ACCTCTGCTCCCATGTCGA 60.305 57.895 0.00 0.00 0.00 4.20
1871 7104 1.079750 GTCCGCCTCTGAGTGGTTC 60.080 63.158 11.54 4.96 38.61 3.62
1942 7175 0.104120 ATCATCGATTTCCGGCGTCA 59.896 50.000 6.01 0.00 39.14 4.35
1953 7186 1.967066 GAGGTCCTCCACATCATCGAT 59.033 52.381 7.78 0.00 35.75 3.59
1987 7220 2.035632 GACACGAATCCTCCCTCTCAT 58.964 52.381 0.00 0.00 0.00 2.90
2036 7269 6.227298 ACAAACCACCTCTCTAGATGTATG 57.773 41.667 0.00 0.00 0.00 2.39
2056 7289 4.089408 GGTCTACCACCAACCTAAACAA 57.911 45.455 0.00 0.00 45.98 2.83
2224 7483 4.445452 TTTGACCCACGCTACTACTAAG 57.555 45.455 0.00 0.00 0.00 2.18
2320 7579 9.032420 CCACACTATAGCTAAAAAGTTAGTAGC 57.968 37.037 0.00 8.90 39.23 3.58
2373 7633 5.048364 GCTACTGCTATGACACTACAGCTAT 60.048 44.000 0.00 0.00 35.05 2.97
2383 7643 1.065764 CCGCGCTACTGCTATGACA 59.934 57.895 5.56 0.00 36.97 3.58
2482 7745 4.717629 TGTCGTCCGCCTCGCAAG 62.718 66.667 0.00 0.00 0.00 4.01
2486 7749 2.805353 CTTGTGTCGTCCGCCTCG 60.805 66.667 0.00 0.00 0.00 4.63
2487 7750 1.733399 GTCTTGTGTCGTCCGCCTC 60.733 63.158 0.00 0.00 0.00 4.70
2488 7751 2.338984 GTCTTGTGTCGTCCGCCT 59.661 61.111 0.00 0.00 0.00 5.52
2489 7752 2.737376 GGTCTTGTGTCGTCCGCC 60.737 66.667 0.00 0.00 0.00 6.13
2490 7753 1.733399 GAGGTCTTGTGTCGTCCGC 60.733 63.158 0.00 0.00 0.00 5.54
2491 7754 1.080705 GGAGGTCTTGTGTCGTCCG 60.081 63.158 0.00 0.00 29.79 4.79
2492 7755 0.244178 GAGGAGGTCTTGTGTCGTCC 59.756 60.000 0.00 0.00 36.83 4.79
2493 7756 0.959553 TGAGGAGGTCTTGTGTCGTC 59.040 55.000 0.00 0.00 0.00 4.20
2494 7757 0.962489 CTGAGGAGGTCTTGTGTCGT 59.038 55.000 0.00 0.00 0.00 4.34
2495 7758 0.244994 CCTGAGGAGGTCTTGTGTCG 59.755 60.000 0.00 0.00 34.16 4.35
2496 7759 0.610687 CCCTGAGGAGGTCTTGTGTC 59.389 60.000 0.00 0.00 37.73 3.67
2497 7760 0.838122 CCCCTGAGGAGGTCTTGTGT 60.838 60.000 0.00 0.00 37.73 3.72
2498 7761 1.986413 CCCCTGAGGAGGTCTTGTG 59.014 63.158 0.00 0.00 37.73 3.33
2499 7762 1.920835 GCCCCTGAGGAGGTCTTGT 60.921 63.158 0.00 0.00 37.73 3.16
2500 7763 1.908340 CTGCCCCTGAGGAGGTCTTG 61.908 65.000 0.00 0.00 37.73 3.02
2501 7764 1.614824 CTGCCCCTGAGGAGGTCTT 60.615 63.158 0.00 0.00 37.73 3.01
2502 7765 2.040278 CTGCCCCTGAGGAGGTCT 59.960 66.667 0.00 0.00 37.73 3.85
2503 7766 3.791586 GCTGCCCCTGAGGAGGTC 61.792 72.222 0.00 0.00 37.73 3.85
2504 7767 3.880033 AAGCTGCCCCTGAGGAGGT 62.880 63.158 0.00 0.00 37.73 3.85
2505 7768 3.013932 AAGCTGCCCCTGAGGAGG 61.014 66.667 0.00 0.00 38.24 4.30
2506 7769 2.296365 TGAAGCTGCCCCTGAGGAG 61.296 63.158 0.00 0.00 38.24 3.69
2507 7770 2.203983 TGAAGCTGCCCCTGAGGA 60.204 61.111 0.00 0.00 38.24 3.71
2508 7771 2.045536 GTGAAGCTGCCCCTGAGG 60.046 66.667 0.00 0.00 39.47 3.86
2509 7772 2.045536 GGTGAAGCTGCCCCTGAG 60.046 66.667 0.00 0.00 0.00 3.35
2510 7773 2.853542 TGGTGAAGCTGCCCCTGA 60.854 61.111 0.00 0.00 0.00 3.86
2511 7774 2.360852 CTGGTGAAGCTGCCCCTG 60.361 66.667 0.00 0.00 0.00 4.45
2512 7775 3.655211 CCTGGTGAAGCTGCCCCT 61.655 66.667 0.00 0.00 0.00 4.79
2514 7777 4.666253 TGCCTGGTGAAGCTGCCC 62.666 66.667 0.00 0.00 0.00 5.36
2515 7778 3.060615 CTGCCTGGTGAAGCTGCC 61.061 66.667 0.00 0.00 0.00 4.85
2516 7779 3.060615 CCTGCCTGGTGAAGCTGC 61.061 66.667 0.00 0.00 0.00 5.25
2517 7780 2.189191 TAGCCTGCCTGGTGAAGCTG 62.189 60.000 11.27 0.00 38.35 4.24
2518 7781 1.908340 CTAGCCTGCCTGGTGAAGCT 61.908 60.000 0.00 1.82 38.35 3.74
2519 7782 1.451028 CTAGCCTGCCTGGTGAAGC 60.451 63.158 0.00 0.00 38.35 3.86
2520 7783 1.451028 GCTAGCCTGCCTGGTGAAG 60.451 63.158 2.29 0.00 38.35 3.02
2521 7784 2.671070 GCTAGCCTGCCTGGTGAA 59.329 61.111 2.29 0.00 38.35 3.18
2522 7785 3.774528 CGCTAGCCTGCCTGGTGA 61.775 66.667 9.66 0.00 34.78 4.02
2523 7786 3.729965 CTCGCTAGCCTGCCTGGTG 62.730 68.421 9.66 0.00 38.35 4.17
2524 7787 3.465403 CTCGCTAGCCTGCCTGGT 61.465 66.667 9.66 0.00 38.35 4.00
2525 7788 4.232878 CCTCGCTAGCCTGCCTGG 62.233 72.222 9.66 0.00 39.35 4.45
2526 7789 4.232878 CCCTCGCTAGCCTGCCTG 62.233 72.222 9.66 0.00 0.00 4.85
2529 7792 4.906792 CAGCCCTCGCTAGCCTGC 62.907 72.222 9.66 6.73 46.25 4.85
2530 7793 4.232878 CCAGCCCTCGCTAGCCTG 62.233 72.222 9.66 9.91 46.25 4.85
2531 7794 4.465446 TCCAGCCCTCGCTAGCCT 62.465 66.667 9.66 0.00 46.25 4.58
2532 7795 3.922640 CTCCAGCCCTCGCTAGCC 61.923 72.222 9.66 0.00 46.25 3.93
2533 7796 2.835431 TCTCCAGCCCTCGCTAGC 60.835 66.667 4.06 4.06 46.25 3.42
2534 7797 0.539438 ATCTCTCCAGCCCTCGCTAG 60.539 60.000 0.00 0.00 46.25 3.42
2535 7798 0.538516 GATCTCTCCAGCCCTCGCTA 60.539 60.000 0.00 0.00 46.25 4.26
2537 7800 1.680522 TTGATCTCTCCAGCCCTCGC 61.681 60.000 0.00 0.00 0.00 5.03
2538 7801 0.388659 CTTGATCTCTCCAGCCCTCG 59.611 60.000 0.00 0.00 0.00 4.63
2539 7802 0.758123 CCTTGATCTCTCCAGCCCTC 59.242 60.000 0.00 0.00 0.00 4.30
2540 7803 1.344191 GCCTTGATCTCTCCAGCCCT 61.344 60.000 0.00 0.00 0.00 5.19
2541 7804 1.148048 GCCTTGATCTCTCCAGCCC 59.852 63.158 0.00 0.00 0.00 5.19
2542 7805 0.254178 TTGCCTTGATCTCTCCAGCC 59.746 55.000 0.00 0.00 0.00 4.85
2543 7806 1.666054 CTTGCCTTGATCTCTCCAGC 58.334 55.000 0.00 0.00 0.00 4.85
2544 7807 1.134159 CCCTTGCCTTGATCTCTCCAG 60.134 57.143 0.00 0.00 0.00 3.86
2545 7808 0.914644 CCCTTGCCTTGATCTCTCCA 59.085 55.000 0.00 0.00 0.00 3.86
2546 7809 1.134250 GTCCCTTGCCTTGATCTCTCC 60.134 57.143 0.00 0.00 0.00 3.71
2547 7810 1.556911 TGTCCCTTGCCTTGATCTCTC 59.443 52.381 0.00 0.00 0.00 3.20
2548 7811 1.280421 GTGTCCCTTGCCTTGATCTCT 59.720 52.381 0.00 0.00 0.00 3.10
2549 7812 1.680249 GGTGTCCCTTGCCTTGATCTC 60.680 57.143 0.00 0.00 0.00 2.75
2550 7813 0.329596 GGTGTCCCTTGCCTTGATCT 59.670 55.000 0.00 0.00 0.00 2.75
2551 7814 0.329596 AGGTGTCCCTTGCCTTGATC 59.670 55.000 0.00 0.00 38.13 2.92
2552 7815 0.329596 GAGGTGTCCCTTGCCTTGAT 59.670 55.000 0.00 0.00 42.86 2.57
2553 7816 1.761174 GAGGTGTCCCTTGCCTTGA 59.239 57.895 0.00 0.00 42.86 3.02
2554 7817 1.672356 CGAGGTGTCCCTTGCCTTG 60.672 63.158 0.00 0.00 42.86 3.61
2555 7818 2.750350 CGAGGTGTCCCTTGCCTT 59.250 61.111 0.00 0.00 42.86 4.35
2559 7822 2.125912 CTCGCGAGGTGTCCCTTG 60.126 66.667 28.40 0.00 42.86 3.61
2560 7823 3.382832 CCTCGCGAGGTGTCCCTT 61.383 66.667 40.77 0.00 42.86 3.95
2569 7832 1.101635 TGTCATAGGGACCTCGCGAG 61.102 60.000 29.06 29.06 46.38 5.03
2570 7833 1.077285 TGTCATAGGGACCTCGCGA 60.077 57.895 9.26 9.26 46.38 5.87
2571 7834 1.065928 GTGTCATAGGGACCTCGCG 59.934 63.158 0.00 0.00 46.38 5.87
2572 7835 0.535335 TTGTGTCATAGGGACCTCGC 59.465 55.000 0.00 0.00 46.38 5.03
2573 7836 1.471676 GCTTGTGTCATAGGGACCTCG 60.472 57.143 0.00 0.00 46.38 4.63
2574 7837 1.134371 GGCTTGTGTCATAGGGACCTC 60.134 57.143 0.00 0.00 46.38 3.85
2575 7838 0.912486 GGCTTGTGTCATAGGGACCT 59.088 55.000 0.00 0.00 46.38 3.85
2576 7839 0.618458 TGGCTTGTGTCATAGGGACC 59.382 55.000 0.00 0.00 46.38 4.46
2578 7841 2.092968 GTCATGGCTTGTGTCATAGGGA 60.093 50.000 0.00 0.00 36.19 4.20
2579 7842 2.292267 GTCATGGCTTGTGTCATAGGG 58.708 52.381 0.00 0.00 36.19 3.53
2580 7843 1.935873 CGTCATGGCTTGTGTCATAGG 59.064 52.381 0.00 0.00 36.19 2.57
2581 7844 2.604914 GTCGTCATGGCTTGTGTCATAG 59.395 50.000 0.00 0.00 36.19 2.23
2582 7845 2.233676 AGTCGTCATGGCTTGTGTCATA 59.766 45.455 0.00 0.00 36.19 2.15
2583 7846 1.002430 AGTCGTCATGGCTTGTGTCAT 59.998 47.619 0.00 0.00 39.39 3.06
2584 7847 0.392706 AGTCGTCATGGCTTGTGTCA 59.607 50.000 0.00 0.00 0.00 3.58
2585 7848 0.792640 CAGTCGTCATGGCTTGTGTC 59.207 55.000 0.00 0.00 0.00 3.67
2586 7849 0.603707 CCAGTCGTCATGGCTTGTGT 60.604 55.000 0.00 0.00 0.00 3.72
2587 7850 2.165380 CCAGTCGTCATGGCTTGTG 58.835 57.895 0.00 0.00 0.00 3.33
2588 7851 4.701663 CCAGTCGTCATGGCTTGT 57.298 55.556 0.00 0.00 0.00 3.16
2625 7888 3.000080 GAAACGAGGACACTGCGCG 62.000 63.158 0.00 0.00 0.00 6.86
2626 7889 2.668280 GGAAACGAGGACACTGCGC 61.668 63.158 0.00 0.00 0.00 6.09
2627 7890 0.600255 AAGGAAACGAGGACACTGCG 60.600 55.000 0.00 0.00 0.00 5.18
2628 7891 1.594331 AAAGGAAACGAGGACACTGC 58.406 50.000 0.00 0.00 0.00 4.40
2629 7892 3.243068 CCAAAAAGGAAACGAGGACACTG 60.243 47.826 0.00 0.00 41.22 3.66
2630 7893 2.949644 CCAAAAAGGAAACGAGGACACT 59.050 45.455 0.00 0.00 41.22 3.55
2631 7894 2.686405 ACCAAAAAGGAAACGAGGACAC 59.314 45.455 0.00 0.00 41.22 3.67
2632 7895 2.685897 CACCAAAAAGGAAACGAGGACA 59.314 45.455 0.00 0.00 41.22 4.02
2633 7896 2.543031 GCACCAAAAAGGAAACGAGGAC 60.543 50.000 0.00 0.00 41.22 3.85
2634 7897 1.679153 GCACCAAAAAGGAAACGAGGA 59.321 47.619 0.00 0.00 41.22 3.71
2635 7898 1.681264 AGCACCAAAAAGGAAACGAGG 59.319 47.619 0.00 0.00 41.22 4.63
2636 7899 4.561735 TTAGCACCAAAAAGGAAACGAG 57.438 40.909 0.00 0.00 41.22 4.18
2637 7900 4.641094 TCTTTAGCACCAAAAAGGAAACGA 59.359 37.500 0.00 0.00 41.22 3.85
2638 7901 4.927422 TCTTTAGCACCAAAAAGGAAACG 58.073 39.130 0.00 0.00 41.22 3.60
2639 7902 5.289595 CCTCTTTAGCACCAAAAAGGAAAC 58.710 41.667 0.00 0.00 41.22 2.78
2640 7903 4.202212 GCCTCTTTAGCACCAAAAAGGAAA 60.202 41.667 2.89 0.00 41.22 3.13
2641 7904 3.320826 GCCTCTTTAGCACCAAAAAGGAA 59.679 43.478 2.89 0.00 41.22 3.36
2642 7905 2.890945 GCCTCTTTAGCACCAAAAAGGA 59.109 45.455 2.89 0.00 41.22 3.36
2643 7906 2.627699 TGCCTCTTTAGCACCAAAAAGG 59.372 45.455 0.00 0.00 45.67 3.11
2644 7907 4.301628 CTTGCCTCTTTAGCACCAAAAAG 58.698 43.478 0.00 0.00 40.69 2.27
2645 7908 3.492482 GCTTGCCTCTTTAGCACCAAAAA 60.492 43.478 0.00 0.00 40.69 1.94
2646 7909 2.035832 GCTTGCCTCTTTAGCACCAAAA 59.964 45.455 0.00 0.00 40.69 2.44
2647 7910 1.613437 GCTTGCCTCTTTAGCACCAAA 59.387 47.619 0.00 0.00 40.69 3.28
2648 7911 1.247567 GCTTGCCTCTTTAGCACCAA 58.752 50.000 0.00 0.00 40.69 3.67
2649 7912 0.955428 CGCTTGCCTCTTTAGCACCA 60.955 55.000 0.00 0.00 40.69 4.17
2650 7913 1.796796 CGCTTGCCTCTTTAGCACC 59.203 57.895 0.00 0.00 40.69 5.01
2651 7914 1.135523 GCGCTTGCCTCTTTAGCAC 59.864 57.895 0.00 0.00 40.69 4.40
2652 7915 2.390599 CGCGCTTGCCTCTTTAGCA 61.391 57.895 5.56 0.00 38.81 3.49
2653 7916 2.401195 CGCGCTTGCCTCTTTAGC 59.599 61.111 5.56 0.00 34.11 3.09
2654 7917 2.464459 CCCGCGCTTGCCTCTTTAG 61.464 63.158 5.56 0.00 34.11 1.85
2655 7918 2.435938 CCCGCGCTTGCCTCTTTA 60.436 61.111 5.56 0.00 34.11 1.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.