Multiple sequence alignment - TraesCS4A01G148500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G148500 chr4A 100.000 2615 0 0 1 2615 279473457 279470843 0.000000e+00 4830.0
1 TraesCS4A01G148500 chr4A 95.833 48 2 0 2034 2081 279471377 279471330 7.760000e-11 78.7
2 TraesCS4A01G148500 chr4A 95.833 48 2 0 2081 2128 279471424 279471377 7.760000e-11 78.7
3 TraesCS4A01G148500 chr3A 91.092 797 66 5 33 825 17714798 17715593 0.000000e+00 1074.0
4 TraesCS4A01G148500 chr3A 90.000 790 69 9 33 815 148052476 148051690 0.000000e+00 1013.0
5 TraesCS4A01G148500 chr3A 97.500 40 1 0 2093 2132 442290691 442290652 4.670000e-08 69.4
6 TraesCS4A01G148500 chr1D 91.277 791 61 7 33 816 256250321 256249532 0.000000e+00 1072.0
7 TraesCS4A01G148500 chr1D 93.478 46 3 0 2090 2135 19408069 19408024 4.670000e-08 69.4
8 TraesCS4A01G148500 chr6D 90.886 790 65 6 33 816 59098184 59098972 0.000000e+00 1053.0
9 TraesCS4A01G148500 chr6D 100.000 28 0 0 2092 2119 366703425 366703398 5.000000e-03 52.8
10 TraesCS4A01G148500 chr4D 90.886 790 65 6 33 816 490987534 490988322 0.000000e+00 1053.0
11 TraesCS4A01G148500 chr4D 90.971 731 25 13 1352 2045 266782558 266783284 0.000000e+00 946.0
12 TraesCS4A01G148500 chr4D 90.389 489 47 0 861 1349 266553132 266553620 0.000000e+00 643.0
13 TraesCS4A01G148500 chr4D 91.560 391 16 7 2132 2522 266783314 266783687 8.290000e-145 523.0
14 TraesCS4A01G148500 chr4D 98.958 96 1 0 2520 2615 266783712 266783807 3.460000e-39 172.0
15 TraesCS4A01G148500 chr7B 89.845 709 63 8 112 816 513740971 513741674 0.000000e+00 902.0
16 TraesCS4A01G148500 chr5B 89.845 709 63 8 112 816 79782151 79782854 0.000000e+00 902.0
17 TraesCS4A01G148500 chr5A 89.563 709 67 7 112 816 169286200 169286905 0.000000e+00 893.0
18 TraesCS4A01G148500 chr1A 89.548 708 65 8 112 815 278147504 278146802 0.000000e+00 889.0
19 TraesCS4A01G148500 chr1A 97.561 41 1 0 2092 2132 31162177 31162217 1.300000e-08 71.3
20 TraesCS4A01G148500 chr1A 95.122 41 1 1 2092 2132 557156567 557156606 2.170000e-06 63.9
21 TraesCS4A01G148500 chr2B 84.310 529 70 9 1061 1584 117931763 117932283 3.000000e-139 505.0
22 TraesCS4A01G148500 chr2D 84.121 529 71 8 1061 1584 76652293 76652813 1.400000e-137 499.0
23 TraesCS4A01G148500 chr7D 91.489 47 2 2 2087 2132 34219502 34219547 2.170000e-06 63.9
24 TraesCS4A01G148500 chr7D 100.000 30 0 0 2090 2119 440044968 440044939 3.640000e-04 56.5
25 TraesCS4A01G148500 chr6A 100.000 28 0 0 2092 2119 507148711 507148684 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G148500 chr4A 279470843 279473457 2614 True 1662.466667 4830 97.222000 1 2615 3 chr4A.!!$R1 2614
1 TraesCS4A01G148500 chr3A 17714798 17715593 795 False 1074.000000 1074 91.092000 33 825 1 chr3A.!!$F1 792
2 TraesCS4A01G148500 chr3A 148051690 148052476 786 True 1013.000000 1013 90.000000 33 815 1 chr3A.!!$R1 782
3 TraesCS4A01G148500 chr1D 256249532 256250321 789 True 1072.000000 1072 91.277000 33 816 1 chr1D.!!$R2 783
4 TraesCS4A01G148500 chr6D 59098184 59098972 788 False 1053.000000 1053 90.886000 33 816 1 chr6D.!!$F1 783
5 TraesCS4A01G148500 chr4D 490987534 490988322 788 False 1053.000000 1053 90.886000 33 816 1 chr4D.!!$F2 783
6 TraesCS4A01G148500 chr4D 266782558 266783807 1249 False 547.000000 946 93.829667 1352 2615 3 chr4D.!!$F3 1263
7 TraesCS4A01G148500 chr7B 513740971 513741674 703 False 902.000000 902 89.845000 112 816 1 chr7B.!!$F1 704
8 TraesCS4A01G148500 chr5B 79782151 79782854 703 False 902.000000 902 89.845000 112 816 1 chr5B.!!$F1 704
9 TraesCS4A01G148500 chr5A 169286200 169286905 705 False 893.000000 893 89.563000 112 816 1 chr5A.!!$F1 704
10 TraesCS4A01G148500 chr1A 278146802 278147504 702 True 889.000000 889 89.548000 112 815 1 chr1A.!!$R1 703
11 TraesCS4A01G148500 chr2B 117931763 117932283 520 False 505.000000 505 84.310000 1061 1584 1 chr2B.!!$F1 523
12 TraesCS4A01G148500 chr2D 76652293 76652813 520 False 499.000000 499 84.121000 1061 1584 1 chr2D.!!$F1 523

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
842 852 0.041312 CGCCGCTAAATTCCCATTCG 60.041 55.0 0.0 0.0 0.0 3.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2200 2253 0.177141 TCCTACCCACACATTAGCGC 59.823 55.0 0.0 0.0 0.0 5.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
85 86 4.224433 ACGGTAATTGACGCATCTATACG 58.776 43.478 3.88 0.00 0.00 3.06
91 92 8.532341 GGTAATTGACGCATCTATACGAATATG 58.468 37.037 0.00 0.00 0.00 1.78
209 211 3.507162 TGCATTCAACCCGGATCATAT 57.493 42.857 0.73 0.00 0.00 1.78
211 213 3.820467 TGCATTCAACCCGGATCATATTC 59.180 43.478 0.73 0.00 0.00 1.75
217 219 1.988107 ACCCGGATCATATTCCAGCAT 59.012 47.619 0.73 0.00 35.34 3.79
236 238 1.229975 TGCGCACTTGATGGTGAGTG 61.230 55.000 5.66 0.00 44.67 3.51
354 360 9.935682 AATATATATTTTTGCAGATATTCGCCG 57.064 29.630 1.91 0.00 0.00 6.46
401 408 9.624697 TGATATGAAGTTTGTTCAGCAATTTAC 57.375 29.630 0.00 0.00 36.89 2.01
457 465 4.167268 GTCTACAAAGGATCTCGACACAC 58.833 47.826 0.00 0.00 0.00 3.82
485 493 1.956477 ACAAAGAAAGCTCGGTGCATT 59.044 42.857 4.74 0.00 45.94 3.56
486 494 2.287788 ACAAAGAAAGCTCGGTGCATTG 60.288 45.455 4.74 4.48 45.94 2.82
487 495 1.609208 AAGAAAGCTCGGTGCATTGT 58.391 45.000 4.74 0.00 45.94 2.71
488 496 2.472695 AGAAAGCTCGGTGCATTGTA 57.527 45.000 4.74 0.00 45.94 2.41
489 497 2.778299 AGAAAGCTCGGTGCATTGTAA 58.222 42.857 4.74 0.00 45.94 2.41
490 498 2.484264 AGAAAGCTCGGTGCATTGTAAC 59.516 45.455 4.74 0.00 45.94 2.50
632 640 4.076394 TGTGTCTATGGTGTTTTAAGGGC 58.924 43.478 0.00 0.00 0.00 5.19
646 654 5.643379 TTTAAGGGCTGTGCTAATTTCAG 57.357 39.130 0.00 0.00 0.00 3.02
825 835 3.555956 CACATTATACTTCCTGTGTCCGC 59.444 47.826 0.00 0.00 35.42 5.54
826 836 2.973694 TTATACTTCCTGTGTCCGCC 57.026 50.000 0.00 0.00 0.00 6.13
827 837 0.742505 TATACTTCCTGTGTCCGCCG 59.257 55.000 0.00 0.00 0.00 6.46
828 838 2.573609 ATACTTCCTGTGTCCGCCGC 62.574 60.000 0.00 0.00 0.00 6.53
829 839 4.379243 CTTCCTGTGTCCGCCGCT 62.379 66.667 0.00 0.00 0.00 5.52
830 840 2.992689 TTCCTGTGTCCGCCGCTA 60.993 61.111 0.00 0.00 0.00 4.26
831 841 2.501223 CTTCCTGTGTCCGCCGCTAA 62.501 60.000 0.00 0.00 0.00 3.09
832 842 2.047655 CCTGTGTCCGCCGCTAAA 60.048 61.111 0.00 0.00 0.00 1.85
833 843 1.449601 CCTGTGTCCGCCGCTAAAT 60.450 57.895 0.00 0.00 0.00 1.40
834 844 1.024579 CCTGTGTCCGCCGCTAAATT 61.025 55.000 0.00 0.00 0.00 1.82
835 845 0.373716 CTGTGTCCGCCGCTAAATTC 59.626 55.000 0.00 0.00 0.00 2.17
836 846 1.022451 TGTGTCCGCCGCTAAATTCC 61.022 55.000 0.00 0.00 0.00 3.01
837 847 1.450669 TGTCCGCCGCTAAATTCCC 60.451 57.895 0.00 0.00 0.00 3.97
838 848 1.450669 GTCCGCCGCTAAATTCCCA 60.451 57.895 0.00 0.00 0.00 4.37
839 849 0.818040 GTCCGCCGCTAAATTCCCAT 60.818 55.000 0.00 0.00 0.00 4.00
840 850 0.106918 TCCGCCGCTAAATTCCCATT 60.107 50.000 0.00 0.00 0.00 3.16
841 851 0.310854 CCGCCGCTAAATTCCCATTC 59.689 55.000 0.00 0.00 0.00 2.67
842 852 0.041312 CGCCGCTAAATTCCCATTCG 60.041 55.000 0.00 0.00 0.00 3.34
843 853 0.317854 GCCGCTAAATTCCCATTCGC 60.318 55.000 0.00 0.00 0.00 4.70
844 854 1.308998 CCGCTAAATTCCCATTCGCT 58.691 50.000 0.00 0.00 0.00 4.93
845 855 1.264288 CCGCTAAATTCCCATTCGCTC 59.736 52.381 0.00 0.00 0.00 5.03
846 856 2.213499 CGCTAAATTCCCATTCGCTCT 58.787 47.619 0.00 0.00 0.00 4.09
847 857 2.221981 CGCTAAATTCCCATTCGCTCTC 59.778 50.000 0.00 0.00 0.00 3.20
848 858 2.221981 GCTAAATTCCCATTCGCTCTCG 59.778 50.000 0.00 0.00 0.00 4.04
849 859 2.403252 AAATTCCCATTCGCTCTCGT 57.597 45.000 0.00 0.00 36.96 4.18
850 860 2.403252 AATTCCCATTCGCTCTCGTT 57.597 45.000 0.00 0.00 36.96 3.85
851 861 2.403252 ATTCCCATTCGCTCTCGTTT 57.597 45.000 0.00 0.00 36.96 3.60
852 862 1.722011 TTCCCATTCGCTCTCGTTTC 58.278 50.000 0.00 0.00 36.96 2.78
853 863 0.895530 TCCCATTCGCTCTCGTTTCT 59.104 50.000 0.00 0.00 36.96 2.52
854 864 1.275291 TCCCATTCGCTCTCGTTTCTT 59.725 47.619 0.00 0.00 36.96 2.52
855 865 2.076863 CCCATTCGCTCTCGTTTCTTT 58.923 47.619 0.00 0.00 36.96 2.52
856 866 3.056393 TCCCATTCGCTCTCGTTTCTTTA 60.056 43.478 0.00 0.00 36.96 1.85
857 867 3.682858 CCCATTCGCTCTCGTTTCTTTAA 59.317 43.478 0.00 0.00 36.96 1.52
858 868 4.332819 CCCATTCGCTCTCGTTTCTTTAAT 59.667 41.667 0.00 0.00 36.96 1.40
859 869 5.163754 CCCATTCGCTCTCGTTTCTTTAATT 60.164 40.000 0.00 0.00 36.96 1.40
860 870 6.036735 CCCATTCGCTCTCGTTTCTTTAATTA 59.963 38.462 0.00 0.00 36.96 1.40
861 871 7.254795 CCCATTCGCTCTCGTTTCTTTAATTAT 60.255 37.037 0.00 0.00 36.96 1.28
862 872 7.794349 CCATTCGCTCTCGTTTCTTTAATTATC 59.206 37.037 0.00 0.00 36.96 1.75
863 873 8.543774 CATTCGCTCTCGTTTCTTTAATTATCT 58.456 33.333 0.00 0.00 36.96 1.98
864 874 8.475331 TTCGCTCTCGTTTCTTTAATTATCTT 57.525 30.769 0.00 0.00 36.96 2.40
865 875 8.475331 TCGCTCTCGTTTCTTTAATTATCTTT 57.525 30.769 0.00 0.00 36.96 2.52
866 876 9.577110 TCGCTCTCGTTTCTTTAATTATCTTTA 57.423 29.630 0.00 0.00 36.96 1.85
881 891 7.631915 ATTATCTTTAACCAAACAAACACGC 57.368 32.000 0.00 0.00 0.00 5.34
882 892 4.705337 TCTTTAACCAAACAAACACGCT 57.295 36.364 0.00 0.00 0.00 5.07
883 893 4.416620 TCTTTAACCAAACAAACACGCTG 58.583 39.130 0.00 0.00 0.00 5.18
884 894 3.851976 TTAACCAAACAAACACGCTGT 57.148 38.095 0.00 0.00 0.00 4.40
885 895 4.959596 TTAACCAAACAAACACGCTGTA 57.040 36.364 0.00 0.00 0.00 2.74
886 896 2.836479 ACCAAACAAACACGCTGTAC 57.164 45.000 0.00 0.00 0.00 2.90
887 897 2.361789 ACCAAACAAACACGCTGTACT 58.638 42.857 0.00 0.00 0.00 2.73
888 898 2.353579 ACCAAACAAACACGCTGTACTC 59.646 45.455 0.00 0.00 0.00 2.59
889 899 2.612212 CCAAACAAACACGCTGTACTCT 59.388 45.455 0.00 0.00 0.00 3.24
890 900 3.064820 CCAAACAAACACGCTGTACTCTT 59.935 43.478 0.00 0.00 0.00 2.85
891 901 3.944422 AACAAACACGCTGTACTCTTG 57.056 42.857 0.00 0.00 0.00 3.02
892 902 2.901249 ACAAACACGCTGTACTCTTGT 58.099 42.857 0.00 0.00 0.00 3.16
893 903 2.607635 ACAAACACGCTGTACTCTTGTG 59.392 45.455 0.00 0.71 29.52 3.33
894 904 2.596904 AACACGCTGTACTCTTGTGT 57.403 45.000 7.58 7.58 45.01 3.72
895 905 1.852942 ACACGCTGTACTCTTGTGTG 58.147 50.000 15.32 15.32 41.81 3.82
896 906 1.407618 ACACGCTGTACTCTTGTGTGA 59.592 47.619 20.26 0.00 41.81 3.58
897 907 2.054363 CACGCTGTACTCTTGTGTGAG 58.946 52.381 13.14 0.00 42.65 3.51
898 908 1.000163 ACGCTGTACTCTTGTGTGAGG 60.000 52.381 0.00 0.00 38.32 3.86
899 909 1.269723 CGCTGTACTCTTGTGTGAGGA 59.730 52.381 0.00 0.00 38.32 3.71
900 910 2.669670 CGCTGTACTCTTGTGTGAGGAG 60.670 54.545 0.00 0.00 38.32 3.69
901 911 2.353208 GCTGTACTCTTGTGTGAGGAGG 60.353 54.545 0.00 0.00 38.32 4.30
902 912 1.618837 TGTACTCTTGTGTGAGGAGGC 59.381 52.381 0.00 0.00 38.32 4.70
903 913 0.888619 TACTCTTGTGTGAGGAGGCG 59.111 55.000 0.00 0.00 38.32 5.52
904 914 0.827925 ACTCTTGTGTGAGGAGGCGA 60.828 55.000 0.00 0.00 38.32 5.54
905 915 0.534412 CTCTTGTGTGAGGAGGCGAT 59.466 55.000 0.00 0.00 0.00 4.58
906 916 0.532573 TCTTGTGTGAGGAGGCGATC 59.467 55.000 0.00 0.00 0.00 3.69
914 924 3.635510 GGAGGCGATCCCTGACTT 58.364 61.111 7.41 0.00 46.60 3.01
915 925 1.144936 GGAGGCGATCCCTGACTTG 59.855 63.158 7.41 0.00 46.60 3.16
916 926 1.617947 GGAGGCGATCCCTGACTTGT 61.618 60.000 7.41 0.00 46.60 3.16
917 927 0.179097 GAGGCGATCCCTGACTTGTC 60.179 60.000 7.41 0.00 46.60 3.18
918 928 0.616111 AGGCGATCCCTGACTTGTCT 60.616 55.000 2.27 0.00 44.28 3.41
919 929 1.112113 GGCGATCCCTGACTTGTCTA 58.888 55.000 2.35 0.00 0.00 2.59
920 930 1.067821 GGCGATCCCTGACTTGTCTAG 59.932 57.143 2.35 0.00 0.00 2.43
921 931 1.751924 GCGATCCCTGACTTGTCTAGT 59.248 52.381 2.35 0.00 40.71 2.57
922 932 2.166664 GCGATCCCTGACTTGTCTAGTT 59.833 50.000 2.35 0.00 37.17 2.24
923 933 3.735514 GCGATCCCTGACTTGTCTAGTTC 60.736 52.174 2.35 0.00 37.17 3.01
924 934 3.697045 CGATCCCTGACTTGTCTAGTTCT 59.303 47.826 2.35 0.00 37.17 3.01
925 935 4.158764 CGATCCCTGACTTGTCTAGTTCTT 59.841 45.833 2.35 0.00 37.17 2.52
926 936 4.873746 TCCCTGACTTGTCTAGTTCTTG 57.126 45.455 2.35 0.00 37.17 3.02
927 937 4.480115 TCCCTGACTTGTCTAGTTCTTGA 58.520 43.478 2.35 0.00 37.17 3.02
928 938 4.524714 TCCCTGACTTGTCTAGTTCTTGAG 59.475 45.833 2.35 0.00 37.17 3.02
929 939 4.524714 CCCTGACTTGTCTAGTTCTTGAGA 59.475 45.833 2.35 0.00 37.17 3.27
930 940 5.011125 CCCTGACTTGTCTAGTTCTTGAGAA 59.989 44.000 2.35 0.00 37.17 2.87
931 941 6.463049 CCCTGACTTGTCTAGTTCTTGAGAAA 60.463 42.308 2.35 0.00 37.17 2.52
932 942 6.644592 CCTGACTTGTCTAGTTCTTGAGAAAG 59.355 42.308 2.35 0.00 37.17 2.62
933 943 7.113658 TGACTTGTCTAGTTCTTGAGAAAGT 57.886 36.000 2.35 9.90 37.17 2.66
934 944 7.203910 TGACTTGTCTAGTTCTTGAGAAAGTC 58.796 38.462 19.78 19.78 38.54 3.01
935 945 7.113658 ACTTGTCTAGTTCTTGAGAAAGTCA 57.886 36.000 0.00 0.00 35.58 3.41
936 946 7.206687 ACTTGTCTAGTTCTTGAGAAAGTCAG 58.793 38.462 0.00 0.00 32.18 3.51
937 947 6.961360 TGTCTAGTTCTTGAGAAAGTCAGA 57.039 37.500 0.00 0.00 36.21 3.27
938 948 6.976088 TGTCTAGTTCTTGAGAAAGTCAGAG 58.024 40.000 0.00 0.00 36.21 3.35
939 949 6.015856 TGTCTAGTTCTTGAGAAAGTCAGAGG 60.016 42.308 0.00 0.00 36.21 3.69
940 950 6.207810 GTCTAGTTCTTGAGAAAGTCAGAGGA 59.792 42.308 0.00 0.00 36.21 3.71
941 951 6.951198 TCTAGTTCTTGAGAAAGTCAGAGGAT 59.049 38.462 0.00 0.00 36.21 3.24
942 952 6.036577 AGTTCTTGAGAAAGTCAGAGGATC 57.963 41.667 0.00 0.00 36.21 3.36
943 953 5.046663 AGTTCTTGAGAAAGTCAGAGGATCC 60.047 44.000 2.48 2.48 36.21 3.36
944 954 3.445450 TCTTGAGAAAGTCAGAGGATCCG 59.555 47.826 5.98 0.00 36.21 4.18
945 955 2.103373 TGAGAAAGTCAGAGGATCCGG 58.897 52.381 5.98 0.00 33.66 5.14
946 956 0.827368 AGAAAGTCAGAGGATCCGGC 59.173 55.000 5.98 2.53 33.66 6.13
947 957 0.827368 GAAAGTCAGAGGATCCGGCT 59.173 55.000 5.98 5.15 33.66 5.52
948 958 0.827368 AAAGTCAGAGGATCCGGCTC 59.173 55.000 5.98 0.00 33.66 4.70
949 959 1.388065 AAGTCAGAGGATCCGGCTCG 61.388 60.000 5.98 3.91 33.66 5.03
974 984 3.896317 CGCAGGAACCCTAGCTATC 57.104 57.895 0.00 0.00 29.64 2.08
975 985 0.318762 CGCAGGAACCCTAGCTATCC 59.681 60.000 3.27 3.27 29.64 2.59
976 986 1.723288 GCAGGAACCCTAGCTATCCT 58.277 55.000 7.67 7.67 43.00 3.24
977 987 1.621317 GCAGGAACCCTAGCTATCCTC 59.379 57.143 10.18 3.65 40.29 3.71
978 988 2.758295 GCAGGAACCCTAGCTATCCTCT 60.758 54.545 10.18 0.00 40.29 3.69
979 989 3.582164 CAGGAACCCTAGCTATCCTCTT 58.418 50.000 10.18 0.00 40.29 2.85
980 990 3.323403 CAGGAACCCTAGCTATCCTCTTG 59.677 52.174 10.18 1.52 40.29 3.02
981 991 3.051727 AGGAACCCTAGCTATCCTCTTGT 60.052 47.826 7.67 0.00 37.80 3.16
982 992 3.322541 GGAACCCTAGCTATCCTCTTGTC 59.677 52.174 4.16 0.00 0.00 3.18
983 993 2.965562 ACCCTAGCTATCCTCTTGTCC 58.034 52.381 0.00 0.00 0.00 4.02
984 994 1.889829 CCCTAGCTATCCTCTTGTCCG 59.110 57.143 0.00 0.00 0.00 4.79
985 995 2.489255 CCCTAGCTATCCTCTTGTCCGA 60.489 54.545 0.00 0.00 0.00 4.55
986 996 2.817258 CCTAGCTATCCTCTTGTCCGAG 59.183 54.545 0.00 0.00 0.00 4.63
992 1002 2.896443 CTCTTGTCCGAGGAGGCC 59.104 66.667 0.00 0.00 40.77 5.19
993 1003 1.984570 CTCTTGTCCGAGGAGGCCA 60.985 63.158 5.01 0.00 40.77 5.36
994 1004 1.306141 TCTTGTCCGAGGAGGCCAT 60.306 57.895 5.01 0.00 40.77 4.40
995 1005 1.144936 CTTGTCCGAGGAGGCCATC 59.855 63.158 5.01 0.00 40.77 3.51
1012 1022 3.341263 TCCGATATGGAGGAGGTCG 57.659 57.895 0.00 0.00 43.74 4.79
1013 1023 0.894184 TCCGATATGGAGGAGGTCGC 60.894 60.000 0.00 0.00 43.74 5.19
1014 1024 1.587054 CGATATGGAGGAGGTCGCC 59.413 63.158 0.00 0.00 35.75 5.54
1015 1025 1.587054 GATATGGAGGAGGTCGCCG 59.413 63.158 0.00 0.00 38.24 6.46
1016 1026 1.878656 GATATGGAGGAGGTCGCCGG 61.879 65.000 0.00 0.00 38.24 6.13
1036 1046 4.778143 GCGGTTCATCCTGGCCGT 62.778 66.667 10.65 0.00 45.30 5.68
1037 1047 2.897207 CGGTTCATCCTGGCCGTA 59.103 61.111 0.00 0.00 39.41 4.02
1038 1048 1.520787 CGGTTCATCCTGGCCGTAC 60.521 63.158 0.00 0.00 39.41 3.67
1039 1049 1.520787 GGTTCATCCTGGCCGTACG 60.521 63.158 8.69 8.69 0.00 3.67
1040 1050 2.171725 GTTCATCCTGGCCGTACGC 61.172 63.158 10.49 5.40 0.00 4.42
1049 1059 3.497031 GCCGTACGCCAAGAAGCC 61.497 66.667 10.49 0.00 0.00 4.35
1050 1060 3.186047 CCGTACGCCAAGAAGCCG 61.186 66.667 10.49 0.00 0.00 5.52
1051 1061 3.849953 CGTACGCCAAGAAGCCGC 61.850 66.667 0.52 0.00 0.00 6.53
1052 1062 2.740826 GTACGCCAAGAAGCCGCA 60.741 61.111 0.00 0.00 0.00 5.69
1053 1063 2.434185 TACGCCAAGAAGCCGCAG 60.434 61.111 0.00 0.00 0.00 5.18
1091 1101 2.047560 GCTGACGTACCACCACCC 60.048 66.667 0.00 0.00 0.00 4.61
1092 1102 2.660802 CTGACGTACCACCACCCC 59.339 66.667 0.00 0.00 0.00 4.95
1093 1103 1.911766 CTGACGTACCACCACCCCT 60.912 63.158 0.00 0.00 0.00 4.79
1094 1104 0.612732 CTGACGTACCACCACCCCTA 60.613 60.000 0.00 0.00 0.00 3.53
1095 1105 0.899717 TGACGTACCACCACCCCTAC 60.900 60.000 0.00 0.00 0.00 3.18
1096 1106 1.607801 GACGTACCACCACCCCTACC 61.608 65.000 0.00 0.00 0.00 3.18
1097 1107 1.610086 CGTACCACCACCCCTACCA 60.610 63.158 0.00 0.00 0.00 3.25
1098 1108 1.610554 CGTACCACCACCCCTACCAG 61.611 65.000 0.00 0.00 0.00 4.00
1099 1109 1.081462 TACCACCACCCCTACCAGG 59.919 63.158 0.00 0.00 34.30 4.45
1148 1161 3.314331 CCACCAGCTCCCTGACGT 61.314 66.667 0.00 0.00 41.77 4.34
1152 1165 4.363990 CAGCTCCCTGACGTGCGT 62.364 66.667 0.00 0.00 41.77 5.24
1153 1166 4.363990 AGCTCCCTGACGTGCGTG 62.364 66.667 0.67 0.00 0.00 5.34
1191 1207 1.580639 GCTCTACACGACGTCGCTC 60.581 63.158 35.92 14.10 44.43 5.03
1320 1336 4.173924 GAGCTCCAGGGGCTGCTC 62.174 72.222 22.39 13.23 40.40 4.26
1545 1561 1.430992 AGGTTTTCGTGGAGGAGGAA 58.569 50.000 0.00 0.00 0.00 3.36
1605 1621 1.217244 GGTACGATGTCCCGCTTGT 59.783 57.895 0.00 0.00 0.00 3.16
1607 1623 0.997196 GTACGATGTCCCGCTTGTTC 59.003 55.000 0.00 0.00 0.00 3.18
1665 1685 7.436673 GGTAGTACTGCAAGAATTAGAGACATG 59.563 40.741 13.26 0.00 37.43 3.21
1691 1711 3.251479 TCTGAATTCTCGTGGTCATGG 57.749 47.619 7.05 0.00 0.00 3.66
1699 1719 1.000843 CTCGTGGTCATGGACACTCAA 59.999 52.381 15.41 4.23 33.68 3.02
1726 1759 4.043200 GTGCTTGGCTTGGCGGAC 62.043 66.667 0.00 0.00 0.00 4.79
1775 1816 3.963383 ACGTAGTTGTGAAGCCAAAAG 57.037 42.857 0.00 0.00 37.78 2.27
1779 1821 4.911610 CGTAGTTGTGAAGCCAAAAGAATG 59.088 41.667 0.00 0.00 0.00 2.67
1790 1832 0.243636 AAAAGAATGGCCTTTCGCGG 59.756 50.000 21.91 0.00 38.94 6.46
1791 1833 1.595093 AAAGAATGGCCTTTCGCGGG 61.595 55.000 21.91 0.00 38.94 6.13
1801 1849 1.404986 CCTTTCGCGGGTCTGTGATTA 60.405 52.381 6.13 0.00 0.00 1.75
1886 1934 3.001330 GGGTTTCTGCTAATCATCGTTCG 59.999 47.826 0.00 0.00 0.00 3.95
1908 1956 7.628769 TCGTTGCATGCATATTATCCATATT 57.371 32.000 23.37 0.00 0.00 1.28
1989 2042 7.395190 ACATAGATATGTTGCTGCTTTGAAA 57.605 32.000 0.00 0.00 43.99 2.69
1995 2048 7.756722 AGATATGTTGCTGCTTTGAAACATTAC 59.243 33.333 16.95 12.40 41.93 1.89
2041 2094 2.054232 TCCTACACGTCCCTCATCTC 57.946 55.000 0.00 0.00 0.00 2.75
2045 2098 2.509166 ACACGTCCCTCATCTCAGTA 57.491 50.000 0.00 0.00 0.00 2.74
2046 2099 2.093106 ACACGTCCCTCATCTCAGTAC 58.907 52.381 0.00 0.00 0.00 2.73
2049 2102 1.950909 CGTCCCTCATCTCAGTACTCC 59.049 57.143 0.00 0.00 0.00 3.85
2050 2103 2.312390 GTCCCTCATCTCAGTACTCCC 58.688 57.143 0.00 0.00 0.00 4.30
2052 2105 2.175931 TCCCTCATCTCAGTACTCCCTC 59.824 54.545 0.00 0.00 0.00 4.30
2053 2106 2.176798 CCCTCATCTCAGTACTCCCTCT 59.823 54.545 0.00 0.00 0.00 3.69
2054 2107 3.221771 CCTCATCTCAGTACTCCCTCTG 58.778 54.545 0.00 0.00 0.00 3.35
2055 2108 3.372566 CCTCATCTCAGTACTCCCTCTGT 60.373 52.174 0.00 0.00 33.89 3.41
2056 2109 4.141367 CCTCATCTCAGTACTCCCTCTGTA 60.141 50.000 0.00 0.00 33.89 2.74
2057 2110 5.441500 CTCATCTCAGTACTCCCTCTGTAA 58.558 45.833 0.00 0.00 33.89 2.41
2058 2111 5.827756 TCATCTCAGTACTCCCTCTGTAAA 58.172 41.667 0.00 0.00 33.89 2.01
2059 2112 5.888724 TCATCTCAGTACTCCCTCTGTAAAG 59.111 44.000 0.00 0.00 33.89 1.85
2060 2113 5.516059 TCTCAGTACTCCCTCTGTAAAGA 57.484 43.478 0.00 0.00 33.89 2.52
2062 2115 7.209340 TCTCAGTACTCCCTCTGTAAAGATA 57.791 40.000 0.00 0.00 33.89 1.98
2065 2118 9.226606 CTCAGTACTCCCTCTGTAAAGATATAG 57.773 40.741 0.00 0.00 33.89 1.31
2066 2119 8.946248 TCAGTACTCCCTCTGTAAAGATATAGA 58.054 37.037 0.00 0.00 33.89 1.98
2067 2120 9.575868 CAGTACTCCCTCTGTAAAGATATAGAA 57.424 37.037 0.00 0.00 30.03 2.10
2068 2121 9.802039 AGTACTCCCTCTGTAAAGATATAGAAG 57.198 37.037 0.00 0.00 30.03 2.85
2069 2122 9.796180 GTACTCCCTCTGTAAAGATATAGAAGA 57.204 37.037 0.00 0.00 30.03 2.87
2070 2123 8.934023 ACTCCCTCTGTAAAGATATAGAAGAG 57.066 38.462 0.00 0.00 36.64 2.85
2071 2124 7.450323 ACTCCCTCTGTAAAGATATAGAAGAGC 59.550 40.741 0.00 0.00 35.42 4.09
2072 2125 6.431543 TCCCTCTGTAAAGATATAGAAGAGCG 59.568 42.308 0.00 0.00 30.03 5.03
2073 2126 6.207810 CCCTCTGTAAAGATATAGAAGAGCGT 59.792 42.308 0.00 0.00 30.03 5.07
2074 2127 7.255660 CCCTCTGTAAAGATATAGAAGAGCGTT 60.256 40.741 0.00 0.00 30.03 4.84
2075 2128 8.138712 CCTCTGTAAAGATATAGAAGAGCGTTT 58.861 37.037 0.00 0.00 30.03 3.60
2082 2135 8.644374 AAGATATAGAAGAGCGTTTAGATCCT 57.356 34.615 0.00 0.00 35.47 3.24
2083 2136 8.276252 AGATATAGAAGAGCGTTTAGATCCTC 57.724 38.462 0.00 0.00 35.47 3.71
2084 2137 7.885922 AGATATAGAAGAGCGTTTAGATCCTCA 59.114 37.037 0.00 0.00 35.47 3.86
2085 2138 6.909550 ATAGAAGAGCGTTTAGATCCTCAT 57.090 37.500 0.00 0.00 35.47 2.90
2086 2139 5.195001 AGAAGAGCGTTTAGATCCTCATC 57.805 43.478 0.00 0.00 35.47 2.92
2087 2140 4.892934 AGAAGAGCGTTTAGATCCTCATCT 59.107 41.667 0.00 0.00 42.48 2.90
2088 2141 4.846779 AGAGCGTTTAGATCCTCATCTC 57.153 45.455 0.00 0.00 40.18 2.75
2089 2142 4.211125 AGAGCGTTTAGATCCTCATCTCA 58.789 43.478 0.00 0.00 40.18 3.27
2090 2143 4.278170 AGAGCGTTTAGATCCTCATCTCAG 59.722 45.833 0.00 0.00 40.18 3.35
2091 2144 3.957497 AGCGTTTAGATCCTCATCTCAGT 59.043 43.478 0.00 0.00 40.18 3.41
2092 2145 5.133941 AGCGTTTAGATCCTCATCTCAGTA 58.866 41.667 0.00 0.00 40.18 2.74
2093 2146 5.009210 AGCGTTTAGATCCTCATCTCAGTAC 59.991 44.000 0.00 0.00 40.18 2.73
2094 2147 5.009210 GCGTTTAGATCCTCATCTCAGTACT 59.991 44.000 0.00 0.00 40.18 2.73
2095 2148 6.664515 CGTTTAGATCCTCATCTCAGTACTC 58.335 44.000 0.00 0.00 40.18 2.59
2096 2149 6.293735 CGTTTAGATCCTCATCTCAGTACTCC 60.294 46.154 0.00 0.00 40.18 3.85
2097 2150 4.112634 AGATCCTCATCTCAGTACTCCC 57.887 50.000 0.00 0.00 33.71 4.30
2098 2151 3.726859 AGATCCTCATCTCAGTACTCCCT 59.273 47.826 0.00 0.00 33.71 4.20
2099 2152 3.586470 TCCTCATCTCAGTACTCCCTC 57.414 52.381 0.00 0.00 0.00 4.30
2100 2153 3.127250 TCCTCATCTCAGTACTCCCTCT 58.873 50.000 0.00 0.00 0.00 3.69
2101 2154 3.117701 TCCTCATCTCAGTACTCCCTCTG 60.118 52.174 0.00 0.00 0.00 3.35
2102 2155 3.372566 CCTCATCTCAGTACTCCCTCTGT 60.373 52.174 0.00 0.00 33.89 3.41
2103 2156 4.141367 CCTCATCTCAGTACTCCCTCTGTA 60.141 50.000 0.00 0.00 33.89 2.74
2104 2157 5.441500 CTCATCTCAGTACTCCCTCTGTAA 58.558 45.833 0.00 0.00 33.89 2.41
2105 2158 5.827756 TCATCTCAGTACTCCCTCTGTAAA 58.172 41.667 0.00 0.00 33.89 2.01
2106 2159 5.888724 TCATCTCAGTACTCCCTCTGTAAAG 59.111 44.000 0.00 0.00 33.89 1.85
2107 2160 5.516059 TCTCAGTACTCCCTCTGTAAAGA 57.484 43.478 0.00 0.00 33.89 2.52
2108 2161 5.888901 TCTCAGTACTCCCTCTGTAAAGAA 58.111 41.667 0.00 0.00 33.89 2.52
2109 2162 6.312529 TCTCAGTACTCCCTCTGTAAAGAAA 58.687 40.000 0.00 0.00 33.89 2.52
2110 2163 6.954684 TCTCAGTACTCCCTCTGTAAAGAAAT 59.045 38.462 0.00 0.00 33.89 2.17
2111 2164 8.114102 TCTCAGTACTCCCTCTGTAAAGAAATA 58.886 37.037 0.00 0.00 33.89 1.40
2112 2165 8.294954 TCAGTACTCCCTCTGTAAAGAAATAG 57.705 38.462 0.00 0.00 33.89 1.73
2113 2166 8.114102 TCAGTACTCCCTCTGTAAAGAAATAGA 58.886 37.037 0.00 0.00 33.89 1.98
2114 2167 8.750298 CAGTACTCCCTCTGTAAAGAAATAGAA 58.250 37.037 0.00 0.00 0.00 2.10
2115 2168 8.973182 AGTACTCCCTCTGTAAAGAAATAGAAG 58.027 37.037 0.00 0.00 0.00 2.85
2116 2169 8.968969 GTACTCCCTCTGTAAAGAAATAGAAGA 58.031 37.037 0.00 0.00 0.00 2.87
2117 2170 8.073467 ACTCCCTCTGTAAAGAAATAGAAGAG 57.927 38.462 0.00 0.00 0.00 2.85
2118 2171 6.879400 TCCCTCTGTAAAGAAATAGAAGAGC 58.121 40.000 0.00 0.00 0.00 4.09
2119 2172 5.751028 CCCTCTGTAAAGAAATAGAAGAGCG 59.249 44.000 0.00 0.00 0.00 5.03
2120 2173 6.334202 CCTCTGTAAAGAAATAGAAGAGCGT 58.666 40.000 0.00 0.00 0.00 5.07
2121 2174 6.814146 CCTCTGTAAAGAAATAGAAGAGCGTT 59.186 38.462 0.00 0.00 0.00 4.84
2122 2175 7.332182 CCTCTGTAAAGAAATAGAAGAGCGTTT 59.668 37.037 0.00 0.00 0.00 3.60
2123 2176 8.018677 TCTGTAAAGAAATAGAAGAGCGTTTG 57.981 34.615 0.00 0.00 0.00 2.93
2124 2177 7.117812 TCTGTAAAGAAATAGAAGAGCGTTTGG 59.882 37.037 0.00 0.00 0.00 3.28
2125 2178 6.932400 TGTAAAGAAATAGAAGAGCGTTTGGA 59.068 34.615 0.00 0.00 0.00 3.53
2126 2179 7.606456 TGTAAAGAAATAGAAGAGCGTTTGGAT 59.394 33.333 0.00 0.00 0.00 3.41
2127 2180 6.670077 AAGAAATAGAAGAGCGTTTGGATC 57.330 37.500 0.00 0.00 0.00 3.36
2128 2181 5.734720 AGAAATAGAAGAGCGTTTGGATCA 58.265 37.500 0.00 0.00 32.03 2.92
2129 2182 5.582665 AGAAATAGAAGAGCGTTTGGATCAC 59.417 40.000 0.00 0.00 32.03 3.06
2130 2183 4.744795 ATAGAAGAGCGTTTGGATCACT 57.255 40.909 0.00 0.00 32.03 3.41
2147 2200 7.770662 TGGATCACTAGAGGGAGTATTATCTT 58.229 38.462 0.00 0.00 0.00 2.40
2148 2201 8.235230 TGGATCACTAGAGGGAGTATTATCTTT 58.765 37.037 0.00 0.00 0.00 2.52
2190 2243 7.428282 AAAATAAAAATAAACAGCCCCAACG 57.572 32.000 0.00 0.00 0.00 4.10
2200 2253 2.721231 CCCCAACGTTGCTGTGTG 59.279 61.111 22.93 7.83 0.00 3.82
2201 2254 2.026014 CCCAACGTTGCTGTGTGC 59.974 61.111 22.93 0.00 43.25 4.57
2209 2262 0.238289 GTTGCTGTGTGCGCTAATGT 59.762 50.000 9.73 0.00 46.63 2.71
2246 2299 3.788227 ACATTGGTTCTGTAAGCTGGA 57.212 42.857 0.00 0.00 34.13 3.86
2247 2300 3.679389 ACATTGGTTCTGTAAGCTGGAG 58.321 45.455 0.00 0.00 34.13 3.86
2265 2318 2.096218 GGAGCGAGCCATTTTATTAGCG 60.096 50.000 0.00 0.00 0.00 4.26
2266 2319 2.544267 GAGCGAGCCATTTTATTAGCGT 59.456 45.455 0.00 0.00 0.00 5.07
2276 2329 6.622896 GCCATTTTATTAGCGTCAGAACAGTT 60.623 38.462 0.00 0.00 0.00 3.16
2277 2330 6.742718 CCATTTTATTAGCGTCAGAACAGTTG 59.257 38.462 0.00 0.00 0.00 3.16
2278 2331 5.856126 TTTATTAGCGTCAGAACAGTTGG 57.144 39.130 0.00 0.00 0.00 3.77
2279 2332 1.508632 TTAGCGTCAGAACAGTTGGC 58.491 50.000 0.00 0.00 0.00 4.52
2280 2333 0.391228 TAGCGTCAGAACAGTTGGCA 59.609 50.000 0.00 0.00 0.00 4.92
2281 2334 0.250467 AGCGTCAGAACAGTTGGCAT 60.250 50.000 0.00 0.00 0.00 4.40
2282 2335 0.110056 GCGTCAGAACAGTTGGCATG 60.110 55.000 0.00 0.00 0.00 4.06
2283 2336 0.518636 CGTCAGAACAGTTGGCATGG 59.481 55.000 0.00 0.00 0.00 3.66
2284 2337 0.242017 GTCAGAACAGTTGGCATGGC 59.758 55.000 13.29 13.29 0.00 4.40
2285 2338 1.210931 CAGAACAGTTGGCATGGCG 59.789 57.895 15.27 2.39 0.00 5.69
2286 2339 1.228245 AGAACAGTTGGCATGGCGT 60.228 52.632 15.27 3.09 0.00 5.68
2287 2340 0.823356 AGAACAGTTGGCATGGCGTT 60.823 50.000 15.27 12.05 0.00 4.84
2288 2341 0.664166 GAACAGTTGGCATGGCGTTG 60.664 55.000 15.27 14.22 0.00 4.10
2289 2342 1.106351 AACAGTTGGCATGGCGTTGA 61.106 50.000 15.27 0.00 0.00 3.18
2290 2343 1.081242 CAGTTGGCATGGCGTTGAC 60.081 57.895 15.27 10.30 0.00 3.18
2295 2348 1.236616 TGGCATGGCGTTGACAAGAG 61.237 55.000 15.27 0.00 29.64 2.85
2314 2367 0.528466 GCCATCTCGATTCACGCTCA 60.528 55.000 0.00 0.00 42.26 4.26
2318 2371 3.242220 CCATCTCGATTCACGCTCAAAAG 60.242 47.826 0.00 0.00 42.26 2.27
2321 2374 2.066262 TCGATTCACGCTCAAAAGGAC 58.934 47.619 0.00 0.00 42.26 3.85
2380 2433 9.308318 CAATGTTTCTTGCATTTCATCATGATA 57.692 29.630 8.15 0.00 34.68 2.15
2428 2481 7.831193 AGCTGTTACACATCCTCTTAAATGAAT 59.169 33.333 0.00 0.00 0.00 2.57
2487 2540 7.928706 GCTACATAGAACCTTTACATCTCATGT 59.071 37.037 0.00 0.00 46.92 3.21
2585 2665 0.390340 TGAGCAGACACCAATCGAGC 60.390 55.000 0.00 0.00 0.00 5.03
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 9.810545 GGCAAGCCAAATTAGTTACATATAAAA 57.189 29.630 6.14 0.00 35.81 1.52
12 13 8.972127 TGGCAAGCCAAATTAGTTACATATAAA 58.028 29.630 12.11 0.00 44.12 1.40
13 14 8.526667 TGGCAAGCCAAATTAGTTACATATAA 57.473 30.769 12.11 0.00 44.12 0.98
29 30 1.026182 CGAAGCATAGTGGCAAGCCA 61.026 55.000 10.24 10.24 45.02 4.75
30 31 1.026718 ACGAAGCATAGTGGCAAGCC 61.027 55.000 3.61 3.61 35.83 4.35
31 32 1.651987 TACGAAGCATAGTGGCAAGC 58.348 50.000 0.00 0.00 35.83 4.01
165 167 5.454966 AGGGTGGTGTAATTTGAAGTTTCT 58.545 37.500 0.00 0.00 0.00 2.52
209 211 0.961857 ATCAAGTGCGCATGCTGGAA 60.962 50.000 15.91 0.00 43.34 3.53
211 213 1.226575 CATCAAGTGCGCATGCTGG 60.227 57.895 15.91 4.38 43.34 4.85
217 219 1.071299 ACTCACCATCAAGTGCGCA 59.929 52.632 5.66 5.66 37.68 6.09
354 360 7.839680 ATCAATCAACCCACCTATTATTTCC 57.160 36.000 0.00 0.00 0.00 3.13
401 408 3.259633 AAAGCCCGCCTCCACTCAG 62.260 63.158 0.00 0.00 0.00 3.35
429 436 4.765339 TCGAGATCCTTTGTAGACAACTCA 59.235 41.667 9.36 0.00 35.28 3.41
457 465 6.250819 CACCGAGCTTTCTTTGTATACATTG 58.749 40.000 6.36 2.99 0.00 2.82
485 493 7.476540 ACCAATGTCTACTATCTGTGTTACA 57.523 36.000 0.00 0.00 0.00 2.41
488 496 8.540388 ACATAACCAATGTCTACTATCTGTGTT 58.460 33.333 0.00 0.00 46.15 3.32
489 497 8.079211 ACATAACCAATGTCTACTATCTGTGT 57.921 34.615 0.00 0.00 46.15 3.72
632 640 6.461110 AAATCATCCCTGAAATTAGCACAG 57.539 37.500 0.00 0.00 34.37 3.66
771 780 5.308014 ACTCACAAAGTGATAGCATGAACA 58.692 37.500 0.00 0.00 41.94 3.18
774 783 7.559486 AGATTACTCACAAAGTGATAGCATGA 58.441 34.615 0.00 0.00 41.94 3.07
808 818 0.742505 CGGCGGACACAGGAAGTATA 59.257 55.000 0.00 0.00 0.00 1.47
816 826 0.373716 GAATTTAGCGGCGGACACAG 59.626 55.000 9.78 0.00 0.00 3.66
825 835 1.264288 GAGCGAATGGGAATTTAGCGG 59.736 52.381 0.00 0.00 0.00 5.52
826 836 2.213499 AGAGCGAATGGGAATTTAGCG 58.787 47.619 0.00 0.00 0.00 4.26
827 837 2.221981 CGAGAGCGAATGGGAATTTAGC 59.778 50.000 0.00 0.00 40.82 3.09
828 838 3.458189 ACGAGAGCGAATGGGAATTTAG 58.542 45.455 0.00 0.00 41.64 1.85
829 839 3.536956 ACGAGAGCGAATGGGAATTTA 57.463 42.857 0.00 0.00 41.64 1.40
830 840 2.403252 ACGAGAGCGAATGGGAATTT 57.597 45.000 0.00 0.00 41.64 1.82
831 841 2.403252 AACGAGAGCGAATGGGAATT 57.597 45.000 0.00 0.00 41.64 2.17
832 842 2.093447 AGAAACGAGAGCGAATGGGAAT 60.093 45.455 0.00 0.00 41.64 3.01
833 843 1.275291 AGAAACGAGAGCGAATGGGAA 59.725 47.619 0.00 0.00 41.64 3.97
834 844 0.895530 AGAAACGAGAGCGAATGGGA 59.104 50.000 0.00 0.00 41.64 4.37
835 845 1.726853 AAGAAACGAGAGCGAATGGG 58.273 50.000 0.00 0.00 41.64 4.00
836 846 4.921470 TTAAAGAAACGAGAGCGAATGG 57.079 40.909 0.00 0.00 41.64 3.16
837 847 8.543774 AGATAATTAAAGAAACGAGAGCGAATG 58.456 33.333 0.00 0.00 41.64 2.67
838 848 8.649973 AGATAATTAAAGAAACGAGAGCGAAT 57.350 30.769 0.00 0.00 41.64 3.34
839 849 8.475331 AAGATAATTAAAGAAACGAGAGCGAA 57.525 30.769 0.00 0.00 41.64 4.70
840 850 8.475331 AAAGATAATTAAAGAAACGAGAGCGA 57.525 30.769 0.00 0.00 41.64 4.93
855 865 9.182933 GCGTGTTTGTTTGGTTAAAGATAATTA 57.817 29.630 0.00 0.00 0.00 1.40
856 866 7.923878 AGCGTGTTTGTTTGGTTAAAGATAATT 59.076 29.630 0.00 0.00 0.00 1.40
857 867 7.381139 CAGCGTGTTTGTTTGGTTAAAGATAAT 59.619 33.333 0.00 0.00 0.00 1.28
858 868 6.693545 CAGCGTGTTTGTTTGGTTAAAGATAA 59.306 34.615 0.00 0.00 0.00 1.75
859 869 6.183360 ACAGCGTGTTTGTTTGGTTAAAGATA 60.183 34.615 0.00 0.00 0.00 1.98
860 870 5.040635 CAGCGTGTTTGTTTGGTTAAAGAT 58.959 37.500 0.00 0.00 0.00 2.40
861 871 4.082679 ACAGCGTGTTTGTTTGGTTAAAGA 60.083 37.500 0.00 0.00 0.00 2.52
862 872 4.170256 ACAGCGTGTTTGTTTGGTTAAAG 58.830 39.130 0.00 0.00 0.00 1.85
863 873 4.175787 ACAGCGTGTTTGTTTGGTTAAA 57.824 36.364 0.00 0.00 0.00 1.52
864 874 3.851976 ACAGCGTGTTTGTTTGGTTAA 57.148 38.095 0.00 0.00 0.00 2.01
865 875 3.940221 AGTACAGCGTGTTTGTTTGGTTA 59.060 39.130 0.00 0.00 0.00 2.85
866 876 2.750712 AGTACAGCGTGTTTGTTTGGTT 59.249 40.909 0.00 0.00 0.00 3.67
867 877 2.353579 GAGTACAGCGTGTTTGTTTGGT 59.646 45.455 0.00 0.00 0.00 3.67
868 878 2.612212 AGAGTACAGCGTGTTTGTTTGG 59.388 45.455 0.00 0.00 0.00 3.28
869 879 3.944422 AGAGTACAGCGTGTTTGTTTG 57.056 42.857 0.00 0.00 0.00 2.93
870 880 3.687698 ACAAGAGTACAGCGTGTTTGTTT 59.312 39.130 0.00 0.00 0.00 2.83
871 881 3.063452 CACAAGAGTACAGCGTGTTTGTT 59.937 43.478 0.00 0.00 0.00 2.83
872 882 2.607635 CACAAGAGTACAGCGTGTTTGT 59.392 45.455 0.00 0.00 0.00 2.83
873 883 2.607635 ACACAAGAGTACAGCGTGTTTG 59.392 45.455 0.00 0.00 37.53 2.93
874 884 2.607635 CACACAAGAGTACAGCGTGTTT 59.392 45.455 7.41 0.00 38.70 2.83
875 885 2.159156 TCACACAAGAGTACAGCGTGTT 60.159 45.455 7.41 0.00 38.70 3.32
876 886 1.407618 TCACACAAGAGTACAGCGTGT 59.592 47.619 0.00 0.00 41.30 4.49
877 887 2.054363 CTCACACAAGAGTACAGCGTG 58.946 52.381 0.00 0.00 0.00 5.34
878 888 1.000163 CCTCACACAAGAGTACAGCGT 60.000 52.381 0.00 0.00 33.75 5.07
879 889 1.269723 TCCTCACACAAGAGTACAGCG 59.730 52.381 0.00 0.00 33.75 5.18
880 890 2.353208 CCTCCTCACACAAGAGTACAGC 60.353 54.545 0.00 0.00 33.75 4.40
881 891 2.353208 GCCTCCTCACACAAGAGTACAG 60.353 54.545 0.00 0.00 33.75 2.74
882 892 1.618837 GCCTCCTCACACAAGAGTACA 59.381 52.381 0.00 0.00 33.75 2.90
883 893 1.402984 CGCCTCCTCACACAAGAGTAC 60.403 57.143 0.00 0.00 33.75 2.73
884 894 0.888619 CGCCTCCTCACACAAGAGTA 59.111 55.000 0.00 0.00 33.75 2.59
885 895 0.827925 TCGCCTCCTCACACAAGAGT 60.828 55.000 0.00 0.00 33.75 3.24
886 896 0.534412 ATCGCCTCCTCACACAAGAG 59.466 55.000 0.00 0.00 35.39 2.85
887 897 0.532573 GATCGCCTCCTCACACAAGA 59.467 55.000 0.00 0.00 0.00 3.02
888 898 0.460987 GGATCGCCTCCTCACACAAG 60.461 60.000 0.00 0.00 41.29 3.16
889 899 1.596934 GGATCGCCTCCTCACACAA 59.403 57.895 0.00 0.00 41.29 3.33
890 900 2.359169 GGGATCGCCTCCTCACACA 61.359 63.158 0.00 0.00 44.28 3.72
891 901 2.060980 AGGGATCGCCTCCTCACAC 61.061 63.158 6.09 0.00 44.28 3.82
892 902 2.060383 CAGGGATCGCCTCCTCACA 61.060 63.158 6.09 0.00 44.28 3.58
893 903 1.758514 TCAGGGATCGCCTCCTCAC 60.759 63.158 6.09 0.00 44.28 3.51
894 904 1.758514 GTCAGGGATCGCCTCCTCA 60.759 63.158 6.09 0.00 44.28 3.86
895 905 1.045911 AAGTCAGGGATCGCCTCCTC 61.046 60.000 6.09 0.00 44.28 3.71
896 906 1.002274 AAGTCAGGGATCGCCTCCT 59.998 57.895 6.09 0.00 44.28 3.69
897 907 1.144936 CAAGTCAGGGATCGCCTCC 59.855 63.158 6.09 0.00 44.11 4.30
898 908 0.179097 GACAAGTCAGGGATCGCCTC 60.179 60.000 6.09 0.00 0.00 4.70
899 909 0.616111 AGACAAGTCAGGGATCGCCT 60.616 55.000 6.09 1.33 0.00 5.52
900 910 1.067821 CTAGACAAGTCAGGGATCGCC 59.932 57.143 6.09 0.00 0.00 5.54
901 911 1.751924 ACTAGACAAGTCAGGGATCGC 59.248 52.381 0.54 0.54 30.33 4.58
902 912 3.697045 AGAACTAGACAAGTCAGGGATCG 59.303 47.826 0.00 0.00 37.50 3.69
903 913 5.186021 TCAAGAACTAGACAAGTCAGGGATC 59.814 44.000 0.00 0.00 37.50 3.36
904 914 5.087323 TCAAGAACTAGACAAGTCAGGGAT 58.913 41.667 0.00 0.00 37.50 3.85
905 915 4.480115 TCAAGAACTAGACAAGTCAGGGA 58.520 43.478 0.00 0.00 37.50 4.20
906 916 4.524714 TCTCAAGAACTAGACAAGTCAGGG 59.475 45.833 0.00 0.00 37.50 4.45
907 917 5.713792 TCTCAAGAACTAGACAAGTCAGG 57.286 43.478 0.00 0.00 37.50 3.86
908 918 7.206687 ACTTTCTCAAGAACTAGACAAGTCAG 58.793 38.462 0.00 1.29 33.34 3.51
909 919 7.113658 ACTTTCTCAAGAACTAGACAAGTCA 57.886 36.000 0.00 0.00 33.34 3.41
910 920 7.203910 TGACTTTCTCAAGAACTAGACAAGTC 58.796 38.462 0.00 9.82 38.55 3.01
911 921 7.068839 TCTGACTTTCTCAAGAACTAGACAAGT 59.931 37.037 0.00 0.00 34.95 3.16
912 922 7.429633 TCTGACTTTCTCAAGAACTAGACAAG 58.570 38.462 0.00 0.00 33.13 3.16
913 923 7.348080 TCTGACTTTCTCAAGAACTAGACAA 57.652 36.000 0.00 0.00 33.13 3.18
914 924 6.015856 CCTCTGACTTTCTCAAGAACTAGACA 60.016 42.308 0.00 0.00 33.13 3.41
915 925 6.207810 TCCTCTGACTTTCTCAAGAACTAGAC 59.792 42.308 0.00 0.00 33.13 2.59
916 926 6.307776 TCCTCTGACTTTCTCAAGAACTAGA 58.692 40.000 0.00 0.00 33.13 2.43
917 927 6.582677 TCCTCTGACTTTCTCAAGAACTAG 57.417 41.667 0.00 0.00 33.13 2.57
918 928 6.153680 GGATCCTCTGACTTTCTCAAGAACTA 59.846 42.308 3.84 0.00 33.13 2.24
919 929 5.046663 GGATCCTCTGACTTTCTCAAGAACT 60.047 44.000 3.84 0.00 33.13 3.01
920 930 5.175127 GGATCCTCTGACTTTCTCAAGAAC 58.825 45.833 3.84 0.00 33.13 3.01
921 931 4.081972 CGGATCCTCTGACTTTCTCAAGAA 60.082 45.833 10.75 0.00 33.72 2.52
922 932 3.445450 CGGATCCTCTGACTTTCTCAAGA 59.555 47.826 10.75 0.00 33.72 3.02
923 933 3.430098 CCGGATCCTCTGACTTTCTCAAG 60.430 52.174 10.75 0.00 35.92 3.02
924 934 2.497675 CCGGATCCTCTGACTTTCTCAA 59.502 50.000 10.75 0.00 0.00 3.02
925 935 2.103373 CCGGATCCTCTGACTTTCTCA 58.897 52.381 10.75 0.00 0.00 3.27
926 936 1.202475 GCCGGATCCTCTGACTTTCTC 60.202 57.143 5.05 0.00 0.00 2.87
927 937 0.827368 GCCGGATCCTCTGACTTTCT 59.173 55.000 5.05 0.00 0.00 2.52
928 938 0.827368 AGCCGGATCCTCTGACTTTC 59.173 55.000 5.05 0.00 0.00 2.62
929 939 0.827368 GAGCCGGATCCTCTGACTTT 59.173 55.000 9.02 0.00 0.00 2.66
930 940 1.388065 CGAGCCGGATCCTCTGACTT 61.388 60.000 15.35 0.00 0.00 3.01
931 941 1.826054 CGAGCCGGATCCTCTGACT 60.826 63.158 15.35 0.00 0.00 3.41
932 942 2.725008 CGAGCCGGATCCTCTGAC 59.275 66.667 15.35 0.00 0.00 3.51
952 962 4.176752 CTAGGGTTCCTGCGGGGC 62.177 72.222 12.87 5.05 34.61 5.80
953 963 4.176752 GCTAGGGTTCCTGCGGGG 62.177 72.222 12.87 0.00 34.61 5.73
954 964 1.122019 ATAGCTAGGGTTCCTGCGGG 61.122 60.000 4.71 4.71 34.52 6.13
955 965 0.318762 GATAGCTAGGGTTCCTGCGG 59.681 60.000 0.00 0.00 34.52 5.69
956 966 0.318762 GGATAGCTAGGGTTCCTGCG 59.681 60.000 0.00 0.00 34.52 5.18
957 967 1.621317 GAGGATAGCTAGGGTTCCTGC 59.379 57.143 16.68 6.59 38.71 4.85
958 968 3.252554 AGAGGATAGCTAGGGTTCCTG 57.747 52.381 16.68 0.00 38.71 3.86
959 969 3.051727 ACAAGAGGATAGCTAGGGTTCCT 60.052 47.826 12.53 12.53 41.29 3.36
960 970 3.310193 ACAAGAGGATAGCTAGGGTTCC 58.690 50.000 0.00 0.87 0.00 3.62
961 971 3.322541 GGACAAGAGGATAGCTAGGGTTC 59.677 52.174 0.00 0.00 0.00 3.62
962 972 3.310193 GGACAAGAGGATAGCTAGGGTT 58.690 50.000 0.00 0.00 0.00 4.11
963 973 2.753507 CGGACAAGAGGATAGCTAGGGT 60.754 54.545 0.00 0.00 0.00 4.34
964 974 1.889829 CGGACAAGAGGATAGCTAGGG 59.110 57.143 0.00 0.00 0.00 3.53
965 975 2.817258 CTCGGACAAGAGGATAGCTAGG 59.183 54.545 0.00 0.00 34.74 3.02
975 985 2.896443 GGCCTCCTCGGACAAGAG 59.104 66.667 0.00 0.00 42.15 2.85
980 990 3.917760 CGGATGGCCTCCTCGGAC 61.918 72.222 16.31 0.00 42.47 4.79
981 991 2.076597 TATCGGATGGCCTCCTCGGA 62.077 60.000 16.31 13.70 42.47 4.55
982 992 0.972983 ATATCGGATGGCCTCCTCGG 60.973 60.000 16.31 9.69 42.47 4.63
983 993 0.174389 CATATCGGATGGCCTCCTCG 59.826 60.000 16.31 9.93 42.47 4.63
984 994 0.539051 CCATATCGGATGGCCTCCTC 59.461 60.000 16.31 5.97 42.47 3.71
985 995 0.117140 TCCATATCGGATGGCCTCCT 59.883 55.000 16.31 4.57 42.47 3.69
986 996 0.539051 CTCCATATCGGATGGCCTCC 59.461 60.000 3.32 7.78 45.19 4.30
987 997 0.539051 CCTCCATATCGGATGGCCTC 59.461 60.000 3.32 0.00 45.19 4.70
988 998 0.117140 TCCTCCATATCGGATGGCCT 59.883 55.000 3.32 0.00 45.19 5.19
989 999 0.539051 CTCCTCCATATCGGATGGCC 59.461 60.000 11.28 0.00 45.19 5.36
990 1000 0.539051 CCTCCTCCATATCGGATGGC 59.461 60.000 11.28 0.00 45.19 4.40
991 1001 1.827969 GACCTCCTCCATATCGGATGG 59.172 57.143 10.16 10.16 45.19 3.51
992 1002 1.474478 CGACCTCCTCCATATCGGATG 59.526 57.143 0.00 0.00 45.19 3.51
993 1003 1.840737 CGACCTCCTCCATATCGGAT 58.159 55.000 0.00 0.00 45.19 4.18
994 1004 0.894184 GCGACCTCCTCCATATCGGA 60.894 60.000 0.00 0.00 43.61 4.55
995 1005 1.587054 GCGACCTCCTCCATATCGG 59.413 63.158 0.00 0.00 33.45 4.18
996 1006 1.587054 GGCGACCTCCTCCATATCG 59.413 63.158 0.00 0.00 35.91 2.92
997 1007 1.587054 CGGCGACCTCCTCCATATC 59.413 63.158 0.00 0.00 0.00 1.63
998 1008 1.908793 CCGGCGACCTCCTCCATAT 60.909 63.158 9.30 0.00 0.00 1.78
999 1009 2.520982 CCGGCGACCTCCTCCATA 60.521 66.667 9.30 0.00 0.00 2.74
1021 1031 1.520787 CGTACGGCCAGGATGAACC 60.521 63.158 7.57 0.00 39.69 3.62
1022 1032 2.171725 GCGTACGGCCAGGATGAAC 61.172 63.158 18.39 0.00 39.69 3.18
1023 1033 2.185867 GCGTACGGCCAGGATGAA 59.814 61.111 18.39 0.00 39.69 2.57
1032 1042 3.497031 GGCTTCTTGGCGTACGGC 61.497 66.667 32.49 32.49 42.51 5.68
1131 1144 3.314331 ACGTCAGGGAGCTGGTGG 61.314 66.667 0.00 0.00 0.00 4.61
1133 1146 4.008933 GCACGTCAGGGAGCTGGT 62.009 66.667 0.00 0.00 0.00 4.00
1263 1279 3.173240 GACAAGTCGCGCTCGTCC 61.173 66.667 5.56 0.00 36.96 4.79
1344 1360 1.813192 GACGAAGAGCTGAGGGAGG 59.187 63.158 0.00 0.00 0.00 4.30
1350 1366 3.068691 CCCCCGACGAAGAGCTGA 61.069 66.667 0.00 0.00 0.00 4.26
1568 1584 1.069090 AAGCCGTTCTCGTTGCAGA 59.931 52.632 0.00 0.00 35.01 4.26
1605 1621 3.310774 GCATAGCAAGCGATCAAGAAGAA 59.689 43.478 0.00 0.00 0.00 2.52
1607 1623 2.032204 GGCATAGCAAGCGATCAAGAAG 60.032 50.000 0.00 0.00 0.00 2.85
1665 1685 2.808543 ACCACGAGAATTCAGAAACTGC 59.191 45.455 8.44 0.00 0.00 4.40
1691 1711 2.658285 CACAAGCAGCAATTGAGTGTC 58.342 47.619 10.34 2.66 0.00 3.67
1699 1719 1.005394 GCCAAGCACAAGCAGCAAT 60.005 52.632 0.00 0.00 45.49 3.56
1775 1816 2.750237 ACCCGCGAAAGGCCATTC 60.750 61.111 8.23 10.76 38.94 2.67
1779 1821 4.699522 ACAGACCCGCGAAAGGCC 62.700 66.667 8.23 0.00 38.94 5.19
1782 1824 1.927174 CTAATCACAGACCCGCGAAAG 59.073 52.381 8.23 0.00 0.00 2.62
1886 1934 9.865321 AGAAAATATGGATAATATGCATGCAAC 57.135 29.630 26.68 11.45 41.64 4.17
1908 1956 5.649395 CCATTGTGCTAAAGATGGAGAGAAA 59.351 40.000 0.00 0.00 41.20 2.52
1966 2019 7.252708 TGTTTCAAAGCAGCAACATATCTATG 58.747 34.615 0.00 0.00 39.55 2.23
1995 2048 9.642327 TTCTTGATGGTGTTAAATGAAATCATG 57.358 29.630 0.00 0.00 36.56 3.07
2041 2094 9.575868 TTCTATATCTTTACAGAGGGAGTACTG 57.424 37.037 0.00 0.00 39.65 2.74
2045 2098 7.450323 GCTCTTCTATATCTTTACAGAGGGAGT 59.550 40.741 0.00 0.00 30.36 3.85
2046 2099 7.361713 CGCTCTTCTATATCTTTACAGAGGGAG 60.362 44.444 4.76 0.00 40.49 4.30
2049 2102 7.209471 ACGCTCTTCTATATCTTTACAGAGG 57.791 40.000 0.00 0.00 30.36 3.69
2056 2109 9.084533 AGGATCTAAACGCTCTTCTATATCTTT 57.915 33.333 0.00 0.00 0.00 2.52
2057 2110 8.644374 AGGATCTAAACGCTCTTCTATATCTT 57.356 34.615 0.00 0.00 0.00 2.40
2058 2111 7.885922 TGAGGATCTAAACGCTCTTCTATATCT 59.114 37.037 0.00 0.00 34.92 1.98
2059 2112 8.046294 TGAGGATCTAAACGCTCTTCTATATC 57.954 38.462 0.00 0.00 34.92 1.63
2060 2113 8.588290 ATGAGGATCTAAACGCTCTTCTATAT 57.412 34.615 0.00 0.00 34.92 0.86
2062 2115 6.719370 AGATGAGGATCTAAACGCTCTTCTAT 59.281 38.462 9.56 0.00 37.15 1.98
2065 2118 5.195001 AGATGAGGATCTAAACGCTCTTC 57.805 43.478 0.00 0.00 37.15 2.87
2066 2119 4.646945 TGAGATGAGGATCTAAACGCTCTT 59.353 41.667 0.00 0.00 39.19 2.85
2067 2120 4.211125 TGAGATGAGGATCTAAACGCTCT 58.789 43.478 0.00 0.00 39.19 4.09
2068 2121 4.037446 ACTGAGATGAGGATCTAAACGCTC 59.963 45.833 0.00 0.00 39.19 5.03
2069 2122 3.957497 ACTGAGATGAGGATCTAAACGCT 59.043 43.478 0.00 0.00 39.19 5.07
2070 2123 4.314740 ACTGAGATGAGGATCTAAACGC 57.685 45.455 0.00 0.00 39.19 4.84
2071 2124 6.293735 GGAGTACTGAGATGAGGATCTAAACG 60.294 46.154 0.00 0.00 39.19 3.60
2072 2125 6.015772 GGGAGTACTGAGATGAGGATCTAAAC 60.016 46.154 0.00 0.00 39.19 2.01
2073 2126 6.071984 GGGAGTACTGAGATGAGGATCTAAA 58.928 44.000 0.00 0.00 39.19 1.85
2074 2127 5.374154 AGGGAGTACTGAGATGAGGATCTAA 59.626 44.000 0.00 0.00 39.19 2.10
2075 2128 4.917040 AGGGAGTACTGAGATGAGGATCTA 59.083 45.833 0.00 0.00 39.19 1.98
2076 2129 3.726859 AGGGAGTACTGAGATGAGGATCT 59.273 47.826 0.00 0.00 42.02 2.75
2077 2130 4.079253 GAGGGAGTACTGAGATGAGGATC 58.921 52.174 0.00 0.00 0.00 3.36
2078 2131 3.726859 AGAGGGAGTACTGAGATGAGGAT 59.273 47.826 0.00 0.00 0.00 3.24
2079 2132 3.117701 CAGAGGGAGTACTGAGATGAGGA 60.118 52.174 0.00 0.00 36.38 3.71
2080 2133 3.221771 CAGAGGGAGTACTGAGATGAGG 58.778 54.545 0.00 0.00 36.38 3.86
2081 2134 3.897239 ACAGAGGGAGTACTGAGATGAG 58.103 50.000 0.00 0.00 37.54 2.90
2082 2135 5.452341 TTACAGAGGGAGTACTGAGATGA 57.548 43.478 0.00 0.00 37.54 2.92
2083 2136 5.888724 TCTTTACAGAGGGAGTACTGAGATG 59.111 44.000 0.00 0.00 37.54 2.90
2084 2137 6.080969 TCTTTACAGAGGGAGTACTGAGAT 57.919 41.667 0.00 0.00 37.54 2.75
2085 2138 5.516059 TCTTTACAGAGGGAGTACTGAGA 57.484 43.478 0.00 0.00 37.54 3.27
2086 2139 6.591750 TTTCTTTACAGAGGGAGTACTGAG 57.408 41.667 0.00 0.00 37.54 3.35
2087 2140 8.114102 TCTATTTCTTTACAGAGGGAGTACTGA 58.886 37.037 0.00 0.00 37.54 3.41
2088 2141 8.294954 TCTATTTCTTTACAGAGGGAGTACTG 57.705 38.462 0.00 0.00 39.65 2.74
2089 2142 8.896722 TTCTATTTCTTTACAGAGGGAGTACT 57.103 34.615 0.00 0.00 0.00 2.73
2090 2143 8.968969 TCTTCTATTTCTTTACAGAGGGAGTAC 58.031 37.037 0.00 0.00 0.00 2.73
2091 2144 9.191479 CTCTTCTATTTCTTTACAGAGGGAGTA 57.809 37.037 0.00 0.00 0.00 2.59
2092 2145 7.364320 GCTCTTCTATTTCTTTACAGAGGGAGT 60.364 40.741 0.00 0.00 0.00 3.85
2093 2146 6.983890 GCTCTTCTATTTCTTTACAGAGGGAG 59.016 42.308 0.00 0.00 0.00 4.30
2094 2147 6.405953 CGCTCTTCTATTTCTTTACAGAGGGA 60.406 42.308 4.76 0.00 40.49 4.20
2095 2148 5.751028 CGCTCTTCTATTTCTTTACAGAGGG 59.249 44.000 0.00 0.00 34.68 4.30
2096 2149 6.334202 ACGCTCTTCTATTTCTTTACAGAGG 58.666 40.000 0.00 0.00 0.00 3.69
2097 2150 7.820044 AACGCTCTTCTATTTCTTTACAGAG 57.180 36.000 0.00 0.00 0.00 3.35
2098 2151 7.117812 CCAAACGCTCTTCTATTTCTTTACAGA 59.882 37.037 0.00 0.00 0.00 3.41
2099 2152 7.117812 TCCAAACGCTCTTCTATTTCTTTACAG 59.882 37.037 0.00 0.00 0.00 2.74
2100 2153 6.932400 TCCAAACGCTCTTCTATTTCTTTACA 59.068 34.615 0.00 0.00 0.00 2.41
2101 2154 7.360575 TCCAAACGCTCTTCTATTTCTTTAC 57.639 36.000 0.00 0.00 0.00 2.01
2102 2155 7.822334 TGATCCAAACGCTCTTCTATTTCTTTA 59.178 33.333 0.00 0.00 0.00 1.85
2103 2156 6.655003 TGATCCAAACGCTCTTCTATTTCTTT 59.345 34.615 0.00 0.00 0.00 2.52
2104 2157 6.092807 GTGATCCAAACGCTCTTCTATTTCTT 59.907 38.462 0.00 0.00 0.00 2.52
2105 2158 5.582665 GTGATCCAAACGCTCTTCTATTTCT 59.417 40.000 0.00 0.00 0.00 2.52
2106 2159 5.582665 AGTGATCCAAACGCTCTTCTATTTC 59.417 40.000 0.00 0.00 0.00 2.17
2107 2160 5.491982 AGTGATCCAAACGCTCTTCTATTT 58.508 37.500 0.00 0.00 0.00 1.40
2108 2161 5.091261 AGTGATCCAAACGCTCTTCTATT 57.909 39.130 0.00 0.00 0.00 1.73
2109 2162 4.744795 AGTGATCCAAACGCTCTTCTAT 57.255 40.909 0.00 0.00 0.00 1.98
2110 2163 4.948004 TCTAGTGATCCAAACGCTCTTCTA 59.052 41.667 0.00 0.00 0.00 2.10
2111 2164 3.764434 TCTAGTGATCCAAACGCTCTTCT 59.236 43.478 0.00 0.00 0.00 2.85
2112 2165 4.109050 CTCTAGTGATCCAAACGCTCTTC 58.891 47.826 0.00 0.00 0.00 2.87
2113 2166 3.118956 CCTCTAGTGATCCAAACGCTCTT 60.119 47.826 0.00 0.00 0.00 2.85
2114 2167 2.428890 CCTCTAGTGATCCAAACGCTCT 59.571 50.000 0.00 0.00 0.00 4.09
2115 2168 2.482142 CCCTCTAGTGATCCAAACGCTC 60.482 54.545 0.00 0.00 0.00 5.03
2116 2169 1.482593 CCCTCTAGTGATCCAAACGCT 59.517 52.381 0.00 0.00 0.00 5.07
2117 2170 1.480954 TCCCTCTAGTGATCCAAACGC 59.519 52.381 0.00 0.00 0.00 4.84
2118 2171 2.761208 ACTCCCTCTAGTGATCCAAACG 59.239 50.000 0.00 0.00 0.00 3.60
2119 2172 6.487299 AATACTCCCTCTAGTGATCCAAAC 57.513 41.667 0.00 0.00 0.00 2.93
2120 2173 8.235230 AGATAATACTCCCTCTAGTGATCCAAA 58.765 37.037 0.00 0.00 0.00 3.28
2121 2174 7.770662 AGATAATACTCCCTCTAGTGATCCAA 58.229 38.462 0.00 0.00 0.00 3.53
2122 2175 7.350044 AGATAATACTCCCTCTAGTGATCCA 57.650 40.000 0.00 0.00 0.00 3.41
2123 2176 8.658840 AAAGATAATACTCCCTCTAGTGATCC 57.341 38.462 0.00 0.00 0.00 3.36
2124 2177 9.528489 AGAAAGATAATACTCCCTCTAGTGATC 57.472 37.037 0.00 0.00 0.00 2.92
2125 2178 9.528489 GAGAAAGATAATACTCCCTCTAGTGAT 57.472 37.037 0.00 0.00 0.00 3.06
2126 2179 8.729047 AGAGAAAGATAATACTCCCTCTAGTGA 58.271 37.037 0.00 0.00 31.74 3.41
2127 2180 8.934023 AGAGAAAGATAATACTCCCTCTAGTG 57.066 38.462 0.00 0.00 31.74 2.74
2128 2181 9.582648 GAAGAGAAAGATAATACTCCCTCTAGT 57.417 37.037 0.00 0.00 32.53 2.57
2129 2182 9.807921 AGAAGAGAAAGATAATACTCCCTCTAG 57.192 37.037 0.00 0.00 32.53 2.43
2130 2183 9.802039 GAGAAGAGAAAGATAATACTCCCTCTA 57.198 37.037 0.00 0.00 32.53 2.43
2190 2243 0.238289 ACATTAGCGCACACAGCAAC 59.762 50.000 11.47 0.00 46.13 4.17
2200 2253 0.177141 TCCTACCCACACATTAGCGC 59.823 55.000 0.00 0.00 0.00 5.92
2201 2254 1.806623 GCTCCTACCCACACATTAGCG 60.807 57.143 0.00 0.00 0.00 4.26
2246 2299 2.544267 GACGCTAATAAAATGGCTCGCT 59.456 45.455 0.00 0.00 0.00 4.93
2247 2300 2.286833 TGACGCTAATAAAATGGCTCGC 59.713 45.455 0.00 0.00 0.00 5.03
2265 2318 0.242017 GCCATGCCAACTGTTCTGAC 59.758 55.000 0.00 0.00 0.00 3.51
2266 2319 1.236616 CGCCATGCCAACTGTTCTGA 61.237 55.000 0.00 0.00 0.00 3.27
2276 2329 1.228094 TCTTGTCAACGCCATGCCA 60.228 52.632 0.00 0.00 0.00 4.92
2277 2330 1.503542 CTCTTGTCAACGCCATGCC 59.496 57.895 0.00 0.00 0.00 4.40
2278 2331 1.154150 GCTCTTGTCAACGCCATGC 60.154 57.895 0.00 0.00 0.00 4.06
2279 2332 1.236616 TGGCTCTTGTCAACGCCATG 61.237 55.000 16.23 0.00 46.75 3.66
2280 2333 1.073025 TGGCTCTTGTCAACGCCAT 59.927 52.632 16.23 0.00 46.75 4.40
2282 2335 0.674895 AGATGGCTCTTGTCAACGCC 60.675 55.000 12.26 12.26 42.78 5.68
2283 2336 0.723981 GAGATGGCTCTTGTCAACGC 59.276 55.000 0.00 0.00 38.16 4.84
2284 2337 0.994995 CGAGATGGCTCTTGTCAACG 59.005 55.000 0.00 0.00 39.06 4.10
2285 2338 2.370281 TCGAGATGGCTCTTGTCAAC 57.630 50.000 0.00 0.00 39.06 3.18
2286 2339 3.055891 TGAATCGAGATGGCTCTTGTCAA 60.056 43.478 0.00 0.00 39.06 3.18
2287 2340 2.497273 TGAATCGAGATGGCTCTTGTCA 59.503 45.455 0.00 0.00 39.06 3.58
2288 2341 2.863137 GTGAATCGAGATGGCTCTTGTC 59.137 50.000 0.00 0.00 39.06 3.18
2289 2342 2.736719 CGTGAATCGAGATGGCTCTTGT 60.737 50.000 0.00 0.00 42.86 3.16
2290 2343 1.857217 CGTGAATCGAGATGGCTCTTG 59.143 52.381 0.00 0.00 42.86 3.02
2295 2348 0.528466 TGAGCGTGAATCGAGATGGC 60.528 55.000 0.00 0.00 42.86 4.40
2321 2374 6.129115 CGTTGCAAACTAATTTCAGGAATGTG 60.129 38.462 0.00 0.00 46.99 3.21
2380 2433 6.431234 AGCTTGAGAATTAGAACGTGGATTTT 59.569 34.615 0.00 0.00 0.00 1.82
2428 2481 2.882137 GTTCCAAACTCCGTTTCCATGA 59.118 45.455 0.00 0.00 33.10 3.07
2446 2499 6.323266 TCTATGTAGCTTTCGTTCTCTGTTC 58.677 40.000 0.00 0.00 0.00 3.18
2585 2665 1.398390 GCCTGTTTTAGCCATCGTCTG 59.602 52.381 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.