Multiple sequence alignment - TraesCS4A01G147100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G147100 chr4A 100.000 2549 0 0 1 2549 260966943 260969491 0.000000e+00 4708.0
1 TraesCS4A01G147100 chr4A 93.694 1348 76 9 1208 2549 341736891 341735547 0.000000e+00 2010.0
2 TraesCS4A01G147100 chr4A 93.249 1348 80 10 1208 2549 341744921 341743579 0.000000e+00 1975.0
3 TraesCS4A01G147100 chr4A 94.564 699 37 1 761 1459 318089216 318089913 0.000000e+00 1079.0
4 TraesCS4A01G147100 chr4A 94.278 699 37 1 761 1459 318097298 318097993 0.000000e+00 1066.0
5 TraesCS4A01G147100 chr4A 92.879 646 46 0 625 1270 491901530 491902175 0.000000e+00 939.0
6 TraesCS4A01G147100 chr4A 94.386 285 11 2 346 626 341745511 341745228 1.400000e-117 433.0
7 TraesCS4A01G147100 chr4A 93.684 285 12 2 346 626 341737480 341737198 3.030000e-114 422.0
8 TraesCS4A01G147100 chr4A 90.094 212 18 3 29 238 151223818 151224028 3.230000e-69 272.0
9 TraesCS4A01G147100 chr4A 89.623 212 19 3 29 238 151231936 151232146 1.500000e-67 267.0
10 TraesCS4A01G147100 chr4A 91.946 149 7 2 482 626 389528361 389528508 1.200000e-48 204.0
11 TraesCS4A01G147100 chr4A 90.411 146 10 1 485 626 389536055 389536200 3.350000e-44 189.0
12 TraesCS4A01G147100 chr4A 91.753 97 7 1 689 784 384888377 384888281 1.590000e-27 134.0
13 TraesCS4A01G147100 chr4A 94.030 67 4 0 404 470 359276702 359276636 4.490000e-18 102.0
14 TraesCS4A01G147100 chr5A 92.937 1798 112 15 761 2549 50246541 50248332 0.000000e+00 2603.0
15 TraesCS4A01G147100 chr5A 92.098 1392 100 9 1164 2549 358311908 358310521 0.000000e+00 1953.0
16 TraesCS4A01G147100 chr5A 91.439 1390 102 14 1166 2549 358327078 358325700 0.000000e+00 1892.0
17 TraesCS4A01G147100 chr5A 87.742 155 18 1 631 784 691650157 691650311 2.010000e-41 180.0
18 TraesCS4A01G147100 chr2A 93.722 1338 78 6 1215 2549 354410656 354409322 0.000000e+00 2001.0
19 TraesCS4A01G147100 chr2A 89.763 1348 124 12 1208 2549 465354698 465353359 0.000000e+00 1712.0
20 TraesCS4A01G147100 chr2A 95.088 285 10 1 346 626 354411254 354410970 1.800000e-121 446.0
21 TraesCS4A01G147100 chr2A 88.123 261 29 2 1 260 258899834 258899575 2.460000e-80 309.0
22 TraesCS4A01G147100 chr2A 90.094 212 18 3 29 238 314295920 314295710 3.230000e-69 272.0
23 TraesCS4A01G147100 chr2A 86.598 97 12 1 689 784 261624862 261624766 3.470000e-19 106.0
24 TraesCS4A01G147100 chr3A 89.474 1349 128 13 1208 2549 223092913 223091572 0.000000e+00 1692.0
25 TraesCS4A01G147100 chr3A 93.292 641 40 3 631 1270 314268770 314268132 0.000000e+00 942.0
26 TraesCS4A01G147100 chr3A 92.980 641 43 2 631 1270 314057108 314056469 0.000000e+00 933.0
27 TraesCS4A01G147100 chr3A 92.668 641 45 2 631 1270 314260563 314259924 0.000000e+00 922.0
28 TraesCS4A01G147100 chr7A 89.392 1348 130 12 1208 2549 188048833 188047493 0.000000e+00 1685.0
29 TraesCS4A01G147100 chr7A 95.136 699 33 1 761 1459 215779325 215778628 0.000000e+00 1101.0
30 TraesCS4A01G147100 chr7A 93.991 699 40 2 761 1459 215787321 215786625 0.000000e+00 1057.0
31 TraesCS4A01G147100 chr7A 88.073 218 23 3 23 238 398176185 398176401 3.250000e-64 255.0
32 TraesCS4A01G147100 chr7A 84.874 119 13 4 631 747 522675683 522675798 5.760000e-22 115.0
33 TraesCS4A01G147100 chr1A 90.533 338 27 4 1 334 223080511 223080175 2.330000e-120 442.0
34 TraesCS4A01G147100 chr1A 89.640 222 20 3 19 238 153046253 153046473 1.930000e-71 279.0
35 TraesCS4A01G147100 chr1A 92.617 149 6 2 482 626 52378086 52378233 2.570000e-50 209.0
36 TraesCS4A01G147100 chr1A 91.946 149 7 2 482 626 52416602 52416749 1.200000e-48 204.0
37 TraesCS4A01G147100 chr1A 84.259 108 14 3 631 736 76506869 76506975 4.490000e-18 102.0
38 TraesCS4A01G147100 chr1A 87.879 66 6 2 634 698 499651395 499651331 2.720000e-10 76.8
39 TraesCS4A01G147100 chr6A 90.090 222 19 3 19 238 369780336 369780116 4.150000e-73 285.0
40 TraesCS4A01G147100 chr6A 89.640 222 20 3 19 238 369835365 369835145 1.930000e-71 279.0
41 TraesCS4A01G147100 chr6A 89.394 66 3 2 565 626 26868213 26868148 2.100000e-11 80.5
42 TraesCS4A01G147100 chr7B 100.000 32 0 0 637 668 463915764 463915795 2.740000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G147100 chr4A 260966943 260969491 2548 False 4708.0 4708 100.0000 1 2549 1 chr4A.!!$F3 2548
1 TraesCS4A01G147100 chr4A 341735547 341737480 1933 True 1216.0 2010 93.6890 346 2549 2 chr4A.!!$R3 2203
2 TraesCS4A01G147100 chr4A 341743579 341745511 1932 True 1204.0 1975 93.8175 346 2549 2 chr4A.!!$R4 2203
3 TraesCS4A01G147100 chr4A 318089216 318089913 697 False 1079.0 1079 94.5640 761 1459 1 chr4A.!!$F4 698
4 TraesCS4A01G147100 chr4A 318097298 318097993 695 False 1066.0 1066 94.2780 761 1459 1 chr4A.!!$F5 698
5 TraesCS4A01G147100 chr4A 491901530 491902175 645 False 939.0 939 92.8790 625 1270 1 chr4A.!!$F8 645
6 TraesCS4A01G147100 chr5A 50246541 50248332 1791 False 2603.0 2603 92.9370 761 2549 1 chr5A.!!$F1 1788
7 TraesCS4A01G147100 chr5A 358310521 358311908 1387 True 1953.0 1953 92.0980 1164 2549 1 chr5A.!!$R1 1385
8 TraesCS4A01G147100 chr5A 358325700 358327078 1378 True 1892.0 1892 91.4390 1166 2549 1 chr5A.!!$R2 1383
9 TraesCS4A01G147100 chr2A 465353359 465354698 1339 True 1712.0 1712 89.7630 1208 2549 1 chr2A.!!$R4 1341
10 TraesCS4A01G147100 chr2A 354409322 354411254 1932 True 1223.5 2001 94.4050 346 2549 2 chr2A.!!$R5 2203
11 TraesCS4A01G147100 chr3A 223091572 223092913 1341 True 1692.0 1692 89.4740 1208 2549 1 chr3A.!!$R1 1341
12 TraesCS4A01G147100 chr3A 314268132 314268770 638 True 942.0 942 93.2920 631 1270 1 chr3A.!!$R4 639
13 TraesCS4A01G147100 chr3A 314056469 314057108 639 True 933.0 933 92.9800 631 1270 1 chr3A.!!$R2 639
14 TraesCS4A01G147100 chr3A 314259924 314260563 639 True 922.0 922 92.6680 631 1270 1 chr3A.!!$R3 639
15 TraesCS4A01G147100 chr7A 188047493 188048833 1340 True 1685.0 1685 89.3920 1208 2549 1 chr7A.!!$R1 1341
16 TraesCS4A01G147100 chr7A 215778628 215779325 697 True 1101.0 1101 95.1360 761 1459 1 chr7A.!!$R2 698
17 TraesCS4A01G147100 chr7A 215786625 215787321 696 True 1057.0 1057 93.9910 761 1459 1 chr7A.!!$R3 698

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
244 245 0.036671 ACCCGTCGATCCCAACTTTC 60.037 55.0 0.0 0.0 0.0 2.62 F
297 298 0.105913 ATCTCTCCCCTTCGTCCTCC 60.106 60.0 0.0 0.0 0.0 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1348 1564 1.011333 CGGTCTTGACGTTTTGGTGT 58.989 50.000 0.00 0.00 0.0 4.16 R
1825 2042 3.071874 TGAGAAACCGATGCAAAGGAT 57.928 42.857 16.49 2.99 0.0 3.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 6.423776 AGGAAATTTTTCATCCTGCTCAAA 57.576 33.333 5.48 0.00 41.96 2.69
29 30 7.012661 AGGAAATTTTTCATCCTGCTCAAAT 57.987 32.000 5.48 0.00 41.96 2.32
30 31 7.455891 AGGAAATTTTTCATCCTGCTCAAATT 58.544 30.769 5.48 0.00 41.96 1.82
31 32 7.605309 AGGAAATTTTTCATCCTGCTCAAATTC 59.395 33.333 5.48 0.00 41.96 2.17
32 33 7.605309 GGAAATTTTTCATCCTGCTCAAATTCT 59.395 33.333 5.48 0.00 38.92 2.40
33 34 8.913487 AAATTTTTCATCCTGCTCAAATTCTT 57.087 26.923 0.00 0.00 0.00 2.52
34 35 8.913487 AATTTTTCATCCTGCTCAAATTCTTT 57.087 26.923 0.00 0.00 0.00 2.52
35 36 7.951530 TTTTTCATCCTGCTCAAATTCTTTC 57.048 32.000 0.00 0.00 0.00 2.62
36 37 5.649782 TTCATCCTGCTCAAATTCTTTCC 57.350 39.130 0.00 0.00 0.00 3.13
37 38 4.019174 TCATCCTGCTCAAATTCTTTCCC 58.981 43.478 0.00 0.00 0.00 3.97
38 39 3.814504 TCCTGCTCAAATTCTTTCCCT 57.185 42.857 0.00 0.00 0.00 4.20
39 40 4.927267 TCCTGCTCAAATTCTTTCCCTA 57.073 40.909 0.00 0.00 0.00 3.53
40 41 5.255397 TCCTGCTCAAATTCTTTCCCTAA 57.745 39.130 0.00 0.00 0.00 2.69
41 42 5.010282 TCCTGCTCAAATTCTTTCCCTAAC 58.990 41.667 0.00 0.00 0.00 2.34
42 43 4.158579 CCTGCTCAAATTCTTTCCCTAACC 59.841 45.833 0.00 0.00 0.00 2.85
43 44 4.998051 TGCTCAAATTCTTTCCCTAACCT 58.002 39.130 0.00 0.00 0.00 3.50
44 45 5.010282 TGCTCAAATTCTTTCCCTAACCTC 58.990 41.667 0.00 0.00 0.00 3.85
45 46 4.399618 GCTCAAATTCTTTCCCTAACCTCC 59.600 45.833 0.00 0.00 0.00 4.30
46 47 4.930696 TCAAATTCTTTCCCTAACCTCCC 58.069 43.478 0.00 0.00 0.00 4.30
47 48 4.606255 TCAAATTCTTTCCCTAACCTCCCT 59.394 41.667 0.00 0.00 0.00 4.20
48 49 4.864483 AATTCTTTCCCTAACCTCCCTC 57.136 45.455 0.00 0.00 0.00 4.30
49 50 3.579742 TTCTTTCCCTAACCTCCCTCT 57.420 47.619 0.00 0.00 0.00 3.69
50 51 3.579742 TCTTTCCCTAACCTCCCTCTT 57.420 47.619 0.00 0.00 0.00 2.85
51 52 3.883135 TCTTTCCCTAACCTCCCTCTTT 58.117 45.455 0.00 0.00 0.00 2.52
52 53 3.844804 TCTTTCCCTAACCTCCCTCTTTC 59.155 47.826 0.00 0.00 0.00 2.62
53 54 3.579742 TTCCCTAACCTCCCTCTTTCT 57.420 47.619 0.00 0.00 0.00 2.52
54 55 3.579742 TCCCTAACCTCCCTCTTTCTT 57.420 47.619 0.00 0.00 0.00 2.52
55 56 3.883135 TCCCTAACCTCCCTCTTTCTTT 58.117 45.455 0.00 0.00 0.00 2.52
56 57 4.248652 TCCCTAACCTCCCTCTTTCTTTT 58.751 43.478 0.00 0.00 0.00 2.27
57 58 4.668335 TCCCTAACCTCCCTCTTTCTTTTT 59.332 41.667 0.00 0.00 0.00 1.94
58 59 5.010933 CCCTAACCTCCCTCTTTCTTTTTC 58.989 45.833 0.00 0.00 0.00 2.29
59 60 5.222151 CCCTAACCTCCCTCTTTCTTTTTCT 60.222 44.000 0.00 0.00 0.00 2.52
60 61 6.307776 CCTAACCTCCCTCTTTCTTTTTCTT 58.692 40.000 0.00 0.00 0.00 2.52
61 62 6.431543 CCTAACCTCCCTCTTTCTTTTTCTTC 59.568 42.308 0.00 0.00 0.00 2.87
62 63 4.730966 ACCTCCCTCTTTCTTTTTCTTCC 58.269 43.478 0.00 0.00 0.00 3.46
63 64 4.082845 CCTCCCTCTTTCTTTTTCTTCCC 58.917 47.826 0.00 0.00 0.00 3.97
64 65 4.082845 CTCCCTCTTTCTTTTTCTTCCCC 58.917 47.826 0.00 0.00 0.00 4.81
65 66 3.727391 TCCCTCTTTCTTTTTCTTCCCCT 59.273 43.478 0.00 0.00 0.00 4.79
66 67 4.170053 TCCCTCTTTCTTTTTCTTCCCCTT 59.830 41.667 0.00 0.00 0.00 3.95
67 68 5.374453 TCCCTCTTTCTTTTTCTTCCCCTTA 59.626 40.000 0.00 0.00 0.00 2.69
68 69 6.075315 CCCTCTTTCTTTTTCTTCCCCTTAA 58.925 40.000 0.00 0.00 0.00 1.85
69 70 6.553476 CCCTCTTTCTTTTTCTTCCCCTTAAA 59.447 38.462 0.00 0.00 0.00 1.52
70 71 7.235606 CCCTCTTTCTTTTTCTTCCCCTTAAAT 59.764 37.037 0.00 0.00 0.00 1.40
71 72 8.651389 CCTCTTTCTTTTTCTTCCCCTTAAATT 58.349 33.333 0.00 0.00 0.00 1.82
72 73 9.481340 CTCTTTCTTTTTCTTCCCCTTAAATTG 57.519 33.333 0.00 0.00 0.00 2.32
73 74 8.988060 TCTTTCTTTTTCTTCCCCTTAAATTGT 58.012 29.630 0.00 0.00 0.00 2.71
74 75 9.613428 CTTTCTTTTTCTTCCCCTTAAATTGTT 57.387 29.630 0.00 0.00 0.00 2.83
75 76 9.967451 TTTCTTTTTCTTCCCCTTAAATTGTTT 57.033 25.926 0.00 0.00 0.00 2.83
76 77 9.967451 TTCTTTTTCTTCCCCTTAAATTGTTTT 57.033 25.926 0.00 0.00 0.00 2.43
77 78 9.607988 TCTTTTTCTTCCCCTTAAATTGTTTTC 57.392 29.630 0.00 0.00 0.00 2.29
78 79 9.613428 CTTTTTCTTCCCCTTAAATTGTTTTCT 57.387 29.630 0.00 0.00 0.00 2.52
79 80 8.956533 TTTTCTTCCCCTTAAATTGTTTTCTG 57.043 30.769 0.00 0.00 0.00 3.02
80 81 6.096673 TCTTCCCCTTAAATTGTTTTCTGC 57.903 37.500 0.00 0.00 0.00 4.26
81 82 5.838521 TCTTCCCCTTAAATTGTTTTCTGCT 59.161 36.000 0.00 0.00 0.00 4.24
82 83 7.007723 TCTTCCCCTTAAATTGTTTTCTGCTA 58.992 34.615 0.00 0.00 0.00 3.49
83 84 7.507616 TCTTCCCCTTAAATTGTTTTCTGCTAA 59.492 33.333 0.00 0.00 0.00 3.09
84 85 7.604657 TCCCCTTAAATTGTTTTCTGCTAAA 57.395 32.000 0.00 0.00 0.00 1.85
85 86 7.666623 TCCCCTTAAATTGTTTTCTGCTAAAG 58.333 34.615 0.00 0.00 0.00 1.85
86 87 7.507616 TCCCCTTAAATTGTTTTCTGCTAAAGA 59.492 33.333 0.00 0.00 0.00 2.52
87 88 8.147704 CCCCTTAAATTGTTTTCTGCTAAAGAA 58.852 33.333 0.00 0.00 43.37 2.52
98 99 6.824305 TTCTGCTAAAGAAAATGGGAAGAG 57.176 37.500 0.00 0.00 42.09 2.85
99 100 5.256474 TCTGCTAAAGAAAATGGGAAGAGG 58.744 41.667 0.00 0.00 29.54 3.69
100 101 5.014123 TCTGCTAAAGAAAATGGGAAGAGGA 59.986 40.000 0.00 0.00 29.54 3.71
101 102 5.256474 TGCTAAAGAAAATGGGAAGAGGAG 58.744 41.667 0.00 0.00 0.00 3.69
102 103 5.014123 TGCTAAAGAAAATGGGAAGAGGAGA 59.986 40.000 0.00 0.00 0.00 3.71
103 104 5.588246 GCTAAAGAAAATGGGAAGAGGAGAG 59.412 44.000 0.00 0.00 0.00 3.20
104 105 5.850046 AAAGAAAATGGGAAGAGGAGAGA 57.150 39.130 0.00 0.00 0.00 3.10
105 106 5.434182 AAGAAAATGGGAAGAGGAGAGAG 57.566 43.478 0.00 0.00 0.00 3.20
106 107 4.693420 AGAAAATGGGAAGAGGAGAGAGA 58.307 43.478 0.00 0.00 0.00 3.10
107 108 4.716287 AGAAAATGGGAAGAGGAGAGAGAG 59.284 45.833 0.00 0.00 0.00 3.20
108 109 4.344938 AAATGGGAAGAGGAGAGAGAGA 57.655 45.455 0.00 0.00 0.00 3.10
109 110 4.557899 AATGGGAAGAGGAGAGAGAGAT 57.442 45.455 0.00 0.00 0.00 2.75
110 111 5.678142 AATGGGAAGAGGAGAGAGAGATA 57.322 43.478 0.00 0.00 0.00 1.98
111 112 4.722526 TGGGAAGAGGAGAGAGAGATAG 57.277 50.000 0.00 0.00 0.00 2.08
112 113 3.181434 TGGGAAGAGGAGAGAGAGATAGC 60.181 52.174 0.00 0.00 0.00 2.97
113 114 3.074538 GGGAAGAGGAGAGAGAGATAGCT 59.925 52.174 0.00 0.00 0.00 3.32
114 115 4.327680 GGAAGAGGAGAGAGAGATAGCTC 58.672 52.174 0.00 0.00 41.62 4.09
115 116 3.685139 AGAGGAGAGAGAGATAGCTCG 57.315 52.381 1.62 0.00 45.98 5.03
116 117 2.972713 AGAGGAGAGAGAGATAGCTCGT 59.027 50.000 1.62 0.00 45.98 4.18
117 118 3.067106 GAGGAGAGAGAGATAGCTCGTG 58.933 54.545 1.62 0.00 45.98 4.35
118 119 1.535462 GGAGAGAGAGATAGCTCGTGC 59.465 57.143 1.62 0.07 45.98 5.34
119 120 1.535462 GAGAGAGAGATAGCTCGTGCC 59.465 57.143 5.73 0.00 45.98 5.01
120 121 1.133945 AGAGAGAGATAGCTCGTGCCA 60.134 52.381 5.73 0.00 45.98 4.92
121 122 1.678627 GAGAGAGATAGCTCGTGCCAA 59.321 52.381 5.73 0.00 45.98 4.52
122 123 1.680735 AGAGAGATAGCTCGTGCCAAG 59.319 52.381 5.73 0.00 45.98 3.61
123 124 0.103937 AGAGATAGCTCGTGCCAAGC 59.896 55.000 5.73 0.00 45.98 4.01
124 125 0.878086 GAGATAGCTCGTGCCAAGCC 60.878 60.000 5.73 0.00 40.75 4.35
125 126 1.144936 GATAGCTCGTGCCAAGCCT 59.855 57.895 5.73 0.00 40.75 4.58
126 127 1.153289 ATAGCTCGTGCCAAGCCTG 60.153 57.895 5.73 0.00 40.75 4.85
127 128 3.958147 TAGCTCGTGCCAAGCCTGC 62.958 63.158 5.73 0.00 40.75 4.85
132 133 3.994853 GTGCCAAGCCTGCCCAAC 61.995 66.667 0.00 0.00 0.00 3.77
135 136 2.284112 CCAAGCCTGCCCAACCAT 60.284 61.111 0.00 0.00 0.00 3.55
136 137 2.353610 CCAAGCCTGCCCAACCATC 61.354 63.158 0.00 0.00 0.00 3.51
137 138 1.304713 CAAGCCTGCCCAACCATCT 60.305 57.895 0.00 0.00 0.00 2.90
138 139 1.000396 AAGCCTGCCCAACCATCTC 60.000 57.895 0.00 0.00 0.00 2.75
139 140 2.440980 GCCTGCCCAACCATCTCC 60.441 66.667 0.00 0.00 0.00 3.71
140 141 2.124570 CCTGCCCAACCATCTCCG 60.125 66.667 0.00 0.00 0.00 4.63
141 142 2.825836 CTGCCCAACCATCTCCGC 60.826 66.667 0.00 0.00 0.00 5.54
142 143 4.776322 TGCCCAACCATCTCCGCG 62.776 66.667 0.00 0.00 0.00 6.46
151 152 4.853142 ATCTCCGCGGCCCACCTA 62.853 66.667 23.51 0.00 0.00 3.08
157 158 3.712907 GCGGCCCACCTAGGTTGA 61.713 66.667 13.15 0.00 34.66 3.18
158 159 2.584608 CGGCCCACCTAGGTTGAG 59.415 66.667 13.15 4.87 34.66 3.02
159 160 2.272471 GGCCCACCTAGGTTGAGC 59.728 66.667 13.15 14.99 34.66 4.26
160 161 2.272471 GCCCACCTAGGTTGAGCC 59.728 66.667 13.15 0.00 34.66 4.70
161 162 2.602676 GCCCACCTAGGTTGAGCCA 61.603 63.158 13.15 0.00 40.61 4.75
162 163 1.604378 CCCACCTAGGTTGAGCCAG 59.396 63.158 13.15 0.00 40.61 4.85
163 164 1.078143 CCACCTAGGTTGAGCCAGC 60.078 63.158 13.15 0.00 40.61 4.85
164 165 1.078143 CACCTAGGTTGAGCCAGCC 60.078 63.158 13.15 0.71 40.61 4.85
165 166 1.229658 ACCTAGGTTGAGCCAGCCT 60.230 57.895 9.21 13.50 46.45 4.58
166 167 0.042731 ACCTAGGTTGAGCCAGCCTA 59.957 55.000 9.21 14.14 43.11 3.93
167 168 0.466124 CCTAGGTTGAGCCAGCCTAC 59.534 60.000 11.85 0.00 43.11 3.18
168 169 1.490574 CTAGGTTGAGCCAGCCTACT 58.509 55.000 11.85 0.00 43.11 2.57
169 170 1.834263 CTAGGTTGAGCCAGCCTACTT 59.166 52.381 11.85 0.00 43.11 2.24
170 171 1.952621 AGGTTGAGCCAGCCTACTTA 58.047 50.000 8.47 0.00 43.11 2.24
171 172 2.266279 AGGTTGAGCCAGCCTACTTAA 58.734 47.619 8.47 0.00 43.11 1.85
172 173 2.237392 AGGTTGAGCCAGCCTACTTAAG 59.763 50.000 8.47 0.00 43.11 1.85
173 174 2.681097 GGTTGAGCCAGCCTACTTAAGG 60.681 54.545 7.53 0.00 42.23 2.69
182 183 1.286248 CCTACTTAAGGCCCACCAGT 58.714 55.000 7.53 0.00 38.97 4.00
183 184 1.065418 CCTACTTAAGGCCCACCAGTG 60.065 57.143 7.53 0.00 38.97 3.66
184 185 4.333352 CCTACTTAAGGCCCACCAGTGG 62.333 59.091 7.91 7.91 42.75 4.00
193 194 3.329889 CACCAGTGGCCTGCCCTA 61.330 66.667 9.78 0.00 37.38 3.53
194 195 3.011517 ACCAGTGGCCTGCCCTAG 61.012 66.667 9.78 0.00 37.38 3.02
195 196 4.496336 CCAGTGGCCTGCCCTAGC 62.496 72.222 3.32 0.00 37.38 3.42
196 197 3.406200 CAGTGGCCTGCCCTAGCT 61.406 66.667 3.32 0.00 40.80 3.32
197 198 3.406200 AGTGGCCTGCCCTAGCTG 61.406 66.667 3.32 0.00 40.80 4.24
224 225 4.162690 CCAGCCGCTACACCCCTC 62.163 72.222 0.00 0.00 0.00 4.30
225 226 3.390521 CAGCCGCTACACCCCTCA 61.391 66.667 0.00 0.00 0.00 3.86
226 227 3.391382 AGCCGCTACACCCCTCAC 61.391 66.667 0.00 0.00 0.00 3.51
227 228 4.468689 GCCGCTACACCCCTCACC 62.469 72.222 0.00 0.00 0.00 4.02
228 229 3.782443 CCGCTACACCCCTCACCC 61.782 72.222 0.00 0.00 0.00 4.61
229 230 4.143333 CGCTACACCCCTCACCCG 62.143 72.222 0.00 0.00 0.00 5.28
230 231 3.001406 GCTACACCCCTCACCCGT 61.001 66.667 0.00 0.00 0.00 5.28
231 232 3.015312 GCTACACCCCTCACCCGTC 62.015 68.421 0.00 0.00 0.00 4.79
232 233 2.677524 TACACCCCTCACCCGTCG 60.678 66.667 0.00 0.00 0.00 5.12
233 234 3.208623 TACACCCCTCACCCGTCGA 62.209 63.158 0.00 0.00 0.00 4.20
234 235 2.503846 TACACCCCTCACCCGTCGAT 62.504 60.000 0.00 0.00 0.00 3.59
235 236 2.758737 ACCCCTCACCCGTCGATC 60.759 66.667 0.00 0.00 0.00 3.69
236 237 3.537874 CCCCTCACCCGTCGATCC 61.538 72.222 0.00 0.00 0.00 3.36
237 238 3.537874 CCCTCACCCGTCGATCCC 61.538 72.222 0.00 0.00 0.00 3.85
238 239 2.758327 CCTCACCCGTCGATCCCA 60.758 66.667 0.00 0.00 0.00 4.37
239 240 2.355986 CCTCACCCGTCGATCCCAA 61.356 63.158 0.00 0.00 0.00 4.12
240 241 1.153628 CTCACCCGTCGATCCCAAC 60.154 63.158 0.00 0.00 0.00 3.77
241 242 1.605058 CTCACCCGTCGATCCCAACT 61.605 60.000 0.00 0.00 0.00 3.16
242 243 1.189524 TCACCCGTCGATCCCAACTT 61.190 55.000 0.00 0.00 0.00 2.66
243 244 0.321298 CACCCGTCGATCCCAACTTT 60.321 55.000 0.00 0.00 0.00 2.66
244 245 0.036671 ACCCGTCGATCCCAACTTTC 60.037 55.000 0.00 0.00 0.00 2.62
245 246 0.249398 CCCGTCGATCCCAACTTTCT 59.751 55.000 0.00 0.00 0.00 2.52
246 247 1.641577 CCGTCGATCCCAACTTTCTC 58.358 55.000 0.00 0.00 0.00 2.87
247 248 1.641577 CGTCGATCCCAACTTTCTCC 58.358 55.000 0.00 0.00 0.00 3.71
248 249 1.739371 CGTCGATCCCAACTTTCTCCC 60.739 57.143 0.00 0.00 0.00 4.30
249 250 1.555533 GTCGATCCCAACTTTCTCCCT 59.444 52.381 0.00 0.00 0.00 4.20
250 251 1.831736 TCGATCCCAACTTTCTCCCTC 59.168 52.381 0.00 0.00 0.00 4.30
251 252 1.134371 CGATCCCAACTTTCTCCCTCC 60.134 57.143 0.00 0.00 0.00 4.30
252 253 0.912486 ATCCCAACTTTCTCCCTCCG 59.088 55.000 0.00 0.00 0.00 4.63
253 254 1.377333 CCCAACTTTCTCCCTCCGC 60.377 63.158 0.00 0.00 0.00 5.54
254 255 1.679898 CCAACTTTCTCCCTCCGCT 59.320 57.895 0.00 0.00 0.00 5.52
255 256 0.674895 CCAACTTTCTCCCTCCGCTG 60.675 60.000 0.00 0.00 0.00 5.18
256 257 1.003233 AACTTTCTCCCTCCGCTGC 60.003 57.895 0.00 0.00 0.00 5.25
257 258 2.124942 CTTTCTCCCTCCGCTGCC 60.125 66.667 0.00 0.00 0.00 4.85
258 259 2.927856 TTTCTCCCTCCGCTGCCA 60.928 61.111 0.00 0.00 0.00 4.92
259 260 2.866085 CTTTCTCCCTCCGCTGCCAG 62.866 65.000 0.00 0.00 0.00 4.85
270 271 4.899239 CTGCCAGCGTCCGATCCC 62.899 72.222 0.00 0.00 0.00 3.85
273 274 3.917760 CCAGCGTCCGATCCCCTC 61.918 72.222 0.00 0.00 0.00 4.30
277 278 3.967335 CGTCCGATCCCCTCGCTC 61.967 72.222 0.00 0.00 46.25 5.03
278 279 2.833582 GTCCGATCCCCTCGCTCA 60.834 66.667 0.00 0.00 46.25 4.26
279 280 2.198703 TCCGATCCCCTCGCTCAT 59.801 61.111 0.00 0.00 46.25 2.90
280 281 1.903890 TCCGATCCCCTCGCTCATC 60.904 63.158 0.00 0.00 46.25 2.92
281 282 1.905843 CCGATCCCCTCGCTCATCT 60.906 63.158 0.00 0.00 46.25 2.90
282 283 1.583986 CGATCCCCTCGCTCATCTC 59.416 63.158 0.00 0.00 41.14 2.75
283 284 0.893270 CGATCCCCTCGCTCATCTCT 60.893 60.000 0.00 0.00 41.14 3.10
284 285 0.887933 GATCCCCTCGCTCATCTCTC 59.112 60.000 0.00 0.00 0.00 3.20
285 286 0.541764 ATCCCCTCGCTCATCTCTCC 60.542 60.000 0.00 0.00 0.00 3.71
286 287 2.206536 CCCCTCGCTCATCTCTCCC 61.207 68.421 0.00 0.00 0.00 4.30
287 288 2.206536 CCCTCGCTCATCTCTCCCC 61.207 68.421 0.00 0.00 0.00 4.81
288 289 1.152567 CCTCGCTCATCTCTCCCCT 60.153 63.158 0.00 0.00 0.00 4.79
289 290 0.758685 CCTCGCTCATCTCTCCCCTT 60.759 60.000 0.00 0.00 0.00 3.95
290 291 0.673437 CTCGCTCATCTCTCCCCTTC 59.327 60.000 0.00 0.00 0.00 3.46
291 292 1.103987 TCGCTCATCTCTCCCCTTCG 61.104 60.000 0.00 0.00 0.00 3.79
292 293 1.388065 CGCTCATCTCTCCCCTTCGT 61.388 60.000 0.00 0.00 0.00 3.85
293 294 0.387565 GCTCATCTCTCCCCTTCGTC 59.612 60.000 0.00 0.00 0.00 4.20
294 295 1.036707 CTCATCTCTCCCCTTCGTCC 58.963 60.000 0.00 0.00 0.00 4.79
295 296 0.631753 TCATCTCTCCCCTTCGTCCT 59.368 55.000 0.00 0.00 0.00 3.85
296 297 1.036707 CATCTCTCCCCTTCGTCCTC 58.963 60.000 0.00 0.00 0.00 3.71
297 298 0.105913 ATCTCTCCCCTTCGTCCTCC 60.106 60.000 0.00 0.00 0.00 4.30
298 299 1.215679 TCTCTCCCCTTCGTCCTCCT 61.216 60.000 0.00 0.00 0.00 3.69
299 300 0.753848 CTCTCCCCTTCGTCCTCCTC 60.754 65.000 0.00 0.00 0.00 3.71
300 301 1.215679 TCTCCCCTTCGTCCTCCTCT 61.216 60.000 0.00 0.00 0.00 3.69
301 302 1.000486 TCCCCTTCGTCCTCCTCTG 60.000 63.158 0.00 0.00 0.00 3.35
302 303 2.060980 CCCCTTCGTCCTCCTCTGG 61.061 68.421 0.00 0.00 0.00 3.86
303 304 2.726351 CCCTTCGTCCTCCTCTGGC 61.726 68.421 0.00 0.00 0.00 4.85
304 305 1.984570 CCTTCGTCCTCCTCTGGCA 60.985 63.158 0.00 0.00 0.00 4.92
305 306 1.216710 CTTCGTCCTCCTCTGGCAC 59.783 63.158 0.00 0.00 0.00 5.01
306 307 2.232298 CTTCGTCCTCCTCTGGCACC 62.232 65.000 0.00 0.00 0.00 5.01
307 308 4.135153 CGTCCTCCTCTGGCACCG 62.135 72.222 0.00 0.00 0.00 4.94
308 309 4.459089 GTCCTCCTCTGGCACCGC 62.459 72.222 0.00 0.00 0.00 5.68
309 310 4.704103 TCCTCCTCTGGCACCGCT 62.704 66.667 0.00 0.00 0.00 5.52
310 311 4.154347 CCTCCTCTGGCACCGCTC 62.154 72.222 0.00 0.00 0.00 5.03
311 312 4.154347 CTCCTCTGGCACCGCTCC 62.154 72.222 0.00 0.00 0.00 4.70
312 313 4.704103 TCCTCTGGCACCGCTCCT 62.704 66.667 0.00 0.00 0.00 3.69
313 314 4.154347 CCTCTGGCACCGCTCCTC 62.154 72.222 0.00 0.00 0.00 3.71
314 315 3.073735 CTCTGGCACCGCTCCTCT 61.074 66.667 0.00 0.00 0.00 3.69
315 316 3.071206 TCTGGCACCGCTCCTCTC 61.071 66.667 0.00 0.00 0.00 3.20
316 317 3.073735 CTGGCACCGCTCCTCTCT 61.074 66.667 0.00 0.00 0.00 3.10
317 318 3.071206 TGGCACCGCTCCTCTCTC 61.071 66.667 0.00 0.00 0.00 3.20
318 319 3.844090 GGCACCGCTCCTCTCTCC 61.844 72.222 0.00 0.00 0.00 3.71
319 320 2.757917 GCACCGCTCCTCTCTCCT 60.758 66.667 0.00 0.00 0.00 3.69
320 321 2.781158 GCACCGCTCCTCTCTCCTC 61.781 68.421 0.00 0.00 0.00 3.71
321 322 1.077068 CACCGCTCCTCTCTCCTCT 60.077 63.158 0.00 0.00 0.00 3.69
322 323 1.101049 CACCGCTCCTCTCTCCTCTC 61.101 65.000 0.00 0.00 0.00 3.20
323 324 1.891919 CCGCTCCTCTCTCCTCTCG 60.892 68.421 0.00 0.00 0.00 4.04
324 325 2.542907 CGCTCCTCTCTCCTCTCGC 61.543 68.421 0.00 0.00 0.00 5.03
325 326 1.152963 GCTCCTCTCTCCTCTCGCT 60.153 63.158 0.00 0.00 0.00 4.93
326 327 1.166531 GCTCCTCTCTCCTCTCGCTC 61.167 65.000 0.00 0.00 0.00 5.03
327 328 0.469917 CTCCTCTCTCCTCTCGCTCT 59.530 60.000 0.00 0.00 0.00 4.09
328 329 0.468226 TCCTCTCTCCTCTCGCTCTC 59.532 60.000 0.00 0.00 0.00 3.20
329 330 0.469917 CCTCTCTCCTCTCGCTCTCT 59.530 60.000 0.00 0.00 0.00 3.10
330 331 1.541233 CCTCTCTCCTCTCGCTCTCTC 60.541 61.905 0.00 0.00 0.00 3.20
331 332 0.468226 TCTCTCCTCTCGCTCTCTCC 59.532 60.000 0.00 0.00 0.00 3.71
332 333 0.535102 CTCTCCTCTCGCTCTCTCCC 60.535 65.000 0.00 0.00 0.00 4.30
333 334 0.986019 TCTCCTCTCGCTCTCTCCCT 60.986 60.000 0.00 0.00 0.00 4.20
334 335 0.535102 CTCCTCTCGCTCTCTCCCTC 60.535 65.000 0.00 0.00 0.00 4.30
335 336 1.891919 CCTCTCGCTCTCTCCCTCG 60.892 68.421 0.00 0.00 0.00 4.63
336 337 2.515057 TCTCGCTCTCTCCCTCGC 60.515 66.667 0.00 0.00 0.00 5.03
337 338 3.591835 CTCGCTCTCTCCCTCGCC 61.592 72.222 0.00 0.00 0.00 5.54
340 341 2.841988 GCTCTCTCCCTCGCCCAT 60.842 66.667 0.00 0.00 0.00 4.00
341 342 1.531840 GCTCTCTCCCTCGCCCATA 60.532 63.158 0.00 0.00 0.00 2.74
342 343 1.531739 GCTCTCTCCCTCGCCCATAG 61.532 65.000 0.00 0.00 0.00 2.23
343 344 1.531739 CTCTCTCCCTCGCCCATAGC 61.532 65.000 0.00 0.00 38.52 2.97
344 345 1.834378 CTCTCCCTCGCCCATAGCA 60.834 63.158 0.00 0.00 44.04 3.49
402 403 4.735132 GCGCTGCGACCACTGGTA 62.735 66.667 28.07 0.00 35.25 3.25
441 444 4.814294 CCGCCACCTACCTCGCAC 62.814 72.222 0.00 0.00 0.00 5.34
626 635 4.636435 CCCGCCGTTGACCAAGGT 62.636 66.667 0.00 0.00 0.00 3.50
828 837 1.594310 GCCTCCTCTTCTCGTTGCT 59.406 57.895 0.00 0.00 0.00 3.91
837 846 2.652382 TTCTCGTTGCTTGTCCGCCA 62.652 55.000 0.00 0.00 0.00 5.69
857 866 2.872388 CGACCACCAGGAGCACTGT 61.872 63.158 0.00 0.00 46.06 3.55
945 955 0.929824 CGTTCAACTTGGTTGCTGCG 60.930 55.000 5.63 6.24 42.55 5.18
963 973 0.317269 CGGCCGCTGCATTAATCTTG 60.317 55.000 14.67 0.00 40.13 3.02
1051 1061 1.347707 ACAAGACCGAGAATGCCAAGA 59.652 47.619 0.00 0.00 0.00 3.02
1348 1564 4.564613 CCATTGACATGTACCACTACACCA 60.565 45.833 0.00 0.00 35.63 4.17
1640 1856 3.000727 CCGCTAAGAACTTGATCCGTTT 58.999 45.455 0.00 0.00 0.00 3.60
1811 2028 1.228521 CCCCACCATCTGTTGCACA 60.229 57.895 0.00 0.00 0.00 4.57
1812 2029 0.612732 CCCCACCATCTGTTGCACAT 60.613 55.000 0.00 0.00 0.00 3.21
1825 2042 2.675844 GTTGCACATATCCGCACACTTA 59.324 45.455 0.00 0.00 38.00 2.24
2078 2303 3.061322 GGGGTTTTACCGAAATTGTTGC 58.939 45.455 0.00 0.00 39.83 4.17
2089 2314 4.495289 CGAAATTGTTGCTTGTTGTTTCG 58.505 39.130 0.00 0.00 39.92 3.46
2091 2316 1.634702 TTGTTGCTTGTTGTTTCGGC 58.365 45.000 0.00 0.00 0.00 5.54
2095 2320 0.749818 TGCTTGTTGTTTCGGCCTCA 60.750 50.000 0.00 0.00 0.00 3.86
2096 2321 0.598065 GCTTGTTGTTTCGGCCTCAT 59.402 50.000 0.00 0.00 0.00 2.90
2102 2327 4.612943 TGTTGTTTCGGCCTCATTTAAAC 58.387 39.130 0.00 2.77 0.00 2.01
2107 2332 1.816224 TCGGCCTCATTTAAACTTGCC 59.184 47.619 0.00 8.91 0.00 4.52
2115 2341 6.873605 GCCTCATTTAAACTTGCCTAAATGTT 59.126 34.615 12.03 0.00 42.35 2.71
2153 2379 4.264253 TCACCTCTTGCCATGTTAATCAG 58.736 43.478 0.00 0.00 0.00 2.90
2336 2567 2.277501 GCGCATCGTGCCATGTTC 60.278 61.111 0.30 0.00 41.12 3.18
2371 2605 8.699749 GTTGTTTATTATGTTGTTTGCTCCTTC 58.300 33.333 0.00 0.00 0.00 3.46
2388 2622 0.472471 TTCCCGGTGTTGCTTCTTCT 59.528 50.000 0.00 0.00 0.00 2.85
2391 2625 1.576421 CGGTGTTGCTTCTTCTGGC 59.424 57.895 0.00 0.00 0.00 4.85
2422 2656 0.249699 ACATCGCGTTTGTGAGGACA 60.250 50.000 14.84 0.00 38.63 4.02
2500 2734 1.138859 TCAGGCAAGATGACCATACCG 59.861 52.381 0.00 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 6.423776 TTTGAGCAGGATGAAAAATTTCCT 57.576 33.333 3.60 0.00 39.69 3.36
6 7 7.605309 AGAATTTGAGCAGGATGAAAAATTTCC 59.395 33.333 3.60 0.00 39.69 3.13
7 8 8.543862 AGAATTTGAGCAGGATGAAAAATTTC 57.456 30.769 0.00 0.00 39.69 2.17
8 9 8.913487 AAGAATTTGAGCAGGATGAAAAATTT 57.087 26.923 0.00 0.00 39.69 1.82
9 10 8.913487 AAAGAATTTGAGCAGGATGAAAAATT 57.087 26.923 0.00 0.00 35.23 1.82
10 11 7.605309 GGAAAGAATTTGAGCAGGATGAAAAAT 59.395 33.333 0.00 0.00 39.27 1.82
11 12 6.930722 GGAAAGAATTTGAGCAGGATGAAAAA 59.069 34.615 0.00 0.00 39.27 1.94
12 13 6.458210 GGAAAGAATTTGAGCAGGATGAAAA 58.542 36.000 0.00 0.00 39.27 2.29
13 14 5.047092 GGGAAAGAATTTGAGCAGGATGAAA 60.047 40.000 0.00 0.00 39.27 2.69
14 15 4.463891 GGGAAAGAATTTGAGCAGGATGAA 59.536 41.667 0.00 0.00 39.27 2.57
15 16 4.019174 GGGAAAGAATTTGAGCAGGATGA 58.981 43.478 0.00 0.00 39.27 2.92
16 17 4.021916 AGGGAAAGAATTTGAGCAGGATG 58.978 43.478 0.00 0.00 39.27 3.51
17 18 4.328118 AGGGAAAGAATTTGAGCAGGAT 57.672 40.909 0.00 0.00 39.27 3.24
18 19 3.814504 AGGGAAAGAATTTGAGCAGGA 57.185 42.857 0.00 0.00 39.27 3.86
19 20 4.158579 GGTTAGGGAAAGAATTTGAGCAGG 59.841 45.833 0.00 0.00 39.27 4.85
20 21 5.012893 AGGTTAGGGAAAGAATTTGAGCAG 58.987 41.667 0.00 0.00 39.27 4.24
21 22 4.998051 AGGTTAGGGAAAGAATTTGAGCA 58.002 39.130 0.00 0.00 39.27 4.26
22 23 4.399618 GGAGGTTAGGGAAAGAATTTGAGC 59.600 45.833 0.00 0.00 39.27 4.26
23 24 4.950475 GGGAGGTTAGGGAAAGAATTTGAG 59.050 45.833 0.00 0.00 39.27 3.02
24 25 4.606255 AGGGAGGTTAGGGAAAGAATTTGA 59.394 41.667 0.00 0.00 39.27 2.69
25 26 4.935578 AGGGAGGTTAGGGAAAGAATTTG 58.064 43.478 0.00 0.00 39.27 2.32
26 27 4.858519 AGAGGGAGGTTAGGGAAAGAATTT 59.141 41.667 0.00 0.00 43.98 1.82
27 28 4.449389 AGAGGGAGGTTAGGGAAAGAATT 58.551 43.478 0.00 0.00 0.00 2.17
28 29 4.095616 AGAGGGAGGTTAGGGAAAGAAT 57.904 45.455 0.00 0.00 0.00 2.40
29 30 3.579742 AGAGGGAGGTTAGGGAAAGAA 57.420 47.619 0.00 0.00 0.00 2.52
30 31 3.579742 AAGAGGGAGGTTAGGGAAAGA 57.420 47.619 0.00 0.00 0.00 2.52
31 32 3.847184 AGAAAGAGGGAGGTTAGGGAAAG 59.153 47.826 0.00 0.00 0.00 2.62
32 33 3.883135 AGAAAGAGGGAGGTTAGGGAAA 58.117 45.455 0.00 0.00 0.00 3.13
33 34 3.579742 AGAAAGAGGGAGGTTAGGGAA 57.420 47.619 0.00 0.00 0.00 3.97
34 35 3.579742 AAGAAAGAGGGAGGTTAGGGA 57.420 47.619 0.00 0.00 0.00 4.20
35 36 4.659529 AAAAGAAAGAGGGAGGTTAGGG 57.340 45.455 0.00 0.00 0.00 3.53
36 37 5.882040 AGAAAAAGAAAGAGGGAGGTTAGG 58.118 41.667 0.00 0.00 0.00 2.69
37 38 6.431543 GGAAGAAAAAGAAAGAGGGAGGTTAG 59.568 42.308 0.00 0.00 0.00 2.34
38 39 6.304624 GGAAGAAAAAGAAAGAGGGAGGTTA 58.695 40.000 0.00 0.00 0.00 2.85
39 40 5.141182 GGAAGAAAAAGAAAGAGGGAGGTT 58.859 41.667 0.00 0.00 0.00 3.50
40 41 4.447908 GGGAAGAAAAAGAAAGAGGGAGGT 60.448 45.833 0.00 0.00 0.00 3.85
41 42 4.082845 GGGAAGAAAAAGAAAGAGGGAGG 58.917 47.826 0.00 0.00 0.00 4.30
42 43 4.082845 GGGGAAGAAAAAGAAAGAGGGAG 58.917 47.826 0.00 0.00 0.00 4.30
43 44 3.727391 AGGGGAAGAAAAAGAAAGAGGGA 59.273 43.478 0.00 0.00 0.00 4.20
44 45 4.119556 AGGGGAAGAAAAAGAAAGAGGG 57.880 45.455 0.00 0.00 0.00 4.30
45 46 7.597288 TTTAAGGGGAAGAAAAAGAAAGAGG 57.403 36.000 0.00 0.00 0.00 3.69
46 47 9.481340 CAATTTAAGGGGAAGAAAAAGAAAGAG 57.519 33.333 0.00 0.00 0.00 2.85
47 48 8.988060 ACAATTTAAGGGGAAGAAAAAGAAAGA 58.012 29.630 0.00 0.00 0.00 2.52
48 49 9.613428 AACAATTTAAGGGGAAGAAAAAGAAAG 57.387 29.630 0.00 0.00 0.00 2.62
49 50 9.967451 AAACAATTTAAGGGGAAGAAAAAGAAA 57.033 25.926 0.00 0.00 0.00 2.52
50 51 9.967451 AAAACAATTTAAGGGGAAGAAAAAGAA 57.033 25.926 0.00 0.00 0.00 2.52
51 52 9.607988 GAAAACAATTTAAGGGGAAGAAAAAGA 57.392 29.630 0.00 0.00 0.00 2.52
52 53 9.613428 AGAAAACAATTTAAGGGGAAGAAAAAG 57.387 29.630 0.00 0.00 0.00 2.27
53 54 9.389755 CAGAAAACAATTTAAGGGGAAGAAAAA 57.610 29.630 0.00 0.00 0.00 1.94
54 55 7.497579 GCAGAAAACAATTTAAGGGGAAGAAAA 59.502 33.333 0.00 0.00 0.00 2.29
55 56 6.989759 GCAGAAAACAATTTAAGGGGAAGAAA 59.010 34.615 0.00 0.00 0.00 2.52
56 57 6.326323 AGCAGAAAACAATTTAAGGGGAAGAA 59.674 34.615 0.00 0.00 0.00 2.52
57 58 5.838521 AGCAGAAAACAATTTAAGGGGAAGA 59.161 36.000 0.00 0.00 0.00 2.87
58 59 6.101650 AGCAGAAAACAATTTAAGGGGAAG 57.898 37.500 0.00 0.00 0.00 3.46
59 60 7.604657 TTAGCAGAAAACAATTTAAGGGGAA 57.395 32.000 0.00 0.00 0.00 3.97
60 61 7.507616 TCTTTAGCAGAAAACAATTTAAGGGGA 59.492 33.333 0.00 0.00 0.00 4.81
61 62 7.666623 TCTTTAGCAGAAAACAATTTAAGGGG 58.333 34.615 0.00 0.00 0.00 4.79
62 63 9.541143 TTTCTTTAGCAGAAAACAATTTAAGGG 57.459 29.630 0.00 0.00 46.68 3.95
75 76 5.711976 CCTCTTCCCATTTTCTTTAGCAGAA 59.288 40.000 0.00 0.00 39.99 3.02
76 77 5.014123 TCCTCTTCCCATTTTCTTTAGCAGA 59.986 40.000 0.00 0.00 0.00 4.26
77 78 5.256474 TCCTCTTCCCATTTTCTTTAGCAG 58.744 41.667 0.00 0.00 0.00 4.24
78 79 5.014123 TCTCCTCTTCCCATTTTCTTTAGCA 59.986 40.000 0.00 0.00 0.00 3.49
79 80 5.501156 TCTCCTCTTCCCATTTTCTTTAGC 58.499 41.667 0.00 0.00 0.00 3.09
80 81 6.951971 TCTCTCCTCTTCCCATTTTCTTTAG 58.048 40.000 0.00 0.00 0.00 1.85
81 82 6.730977 TCTCTCTCCTCTTCCCATTTTCTTTA 59.269 38.462 0.00 0.00 0.00 1.85
82 83 5.549619 TCTCTCTCCTCTTCCCATTTTCTTT 59.450 40.000 0.00 0.00 0.00 2.52
83 84 5.097234 TCTCTCTCCTCTTCCCATTTTCTT 58.903 41.667 0.00 0.00 0.00 2.52
84 85 4.693420 TCTCTCTCCTCTTCCCATTTTCT 58.307 43.478 0.00 0.00 0.00 2.52
85 86 4.714308 TCTCTCTCTCCTCTTCCCATTTTC 59.286 45.833 0.00 0.00 0.00 2.29
86 87 4.693420 TCTCTCTCTCCTCTTCCCATTTT 58.307 43.478 0.00 0.00 0.00 1.82
87 88 4.344938 TCTCTCTCTCCTCTTCCCATTT 57.655 45.455 0.00 0.00 0.00 2.32
88 89 4.557899 ATCTCTCTCTCCTCTTCCCATT 57.442 45.455 0.00 0.00 0.00 3.16
89 90 4.509122 GCTATCTCTCTCTCCTCTTCCCAT 60.509 50.000 0.00 0.00 0.00 4.00
90 91 3.181434 GCTATCTCTCTCTCCTCTTCCCA 60.181 52.174 0.00 0.00 0.00 4.37
91 92 3.074538 AGCTATCTCTCTCTCCTCTTCCC 59.925 52.174 0.00 0.00 0.00 3.97
92 93 4.327680 GAGCTATCTCTCTCTCCTCTTCC 58.672 52.174 0.00 0.00 36.42 3.46
93 94 3.997021 CGAGCTATCTCTCTCTCCTCTTC 59.003 52.174 0.00 0.00 37.19 2.87
94 95 3.391296 ACGAGCTATCTCTCTCTCCTCTT 59.609 47.826 0.00 0.00 37.19 2.85
95 96 2.972713 ACGAGCTATCTCTCTCTCCTCT 59.027 50.000 0.00 0.00 37.19 3.69
96 97 3.067106 CACGAGCTATCTCTCTCTCCTC 58.933 54.545 0.00 0.00 37.19 3.71
97 98 2.810400 GCACGAGCTATCTCTCTCTCCT 60.810 54.545 0.00 0.00 37.19 3.69
98 99 1.535462 GCACGAGCTATCTCTCTCTCC 59.465 57.143 0.00 0.00 37.19 3.71
99 100 1.535462 GGCACGAGCTATCTCTCTCTC 59.465 57.143 4.48 0.00 41.70 3.20
100 101 1.133945 TGGCACGAGCTATCTCTCTCT 60.134 52.381 4.48 0.00 41.70 3.10
101 102 1.313772 TGGCACGAGCTATCTCTCTC 58.686 55.000 4.48 0.00 41.70 3.20
102 103 1.680735 CTTGGCACGAGCTATCTCTCT 59.319 52.381 4.48 0.00 41.70 3.10
103 104 1.867698 GCTTGGCACGAGCTATCTCTC 60.868 57.143 4.48 0.00 41.70 3.20
104 105 0.103937 GCTTGGCACGAGCTATCTCT 59.896 55.000 4.48 0.00 41.70 3.10
105 106 0.878086 GGCTTGGCACGAGCTATCTC 60.878 60.000 10.74 0.00 41.70 2.75
106 107 1.144936 GGCTTGGCACGAGCTATCT 59.855 57.895 10.74 0.00 41.70 1.98
107 108 1.144936 AGGCTTGGCACGAGCTATC 59.855 57.895 10.74 0.00 41.70 2.08
108 109 1.153289 CAGGCTTGGCACGAGCTAT 60.153 57.895 10.74 0.00 41.70 2.97
109 110 2.265739 CAGGCTTGGCACGAGCTA 59.734 61.111 10.74 0.00 41.70 3.32
118 119 2.284112 ATGGTTGGGCAGGCTTGG 60.284 61.111 0.00 0.00 0.00 3.61
119 120 1.304713 AGATGGTTGGGCAGGCTTG 60.305 57.895 0.00 0.00 0.00 4.01
120 121 1.000396 GAGATGGTTGGGCAGGCTT 60.000 57.895 0.00 0.00 0.00 4.35
121 122 2.679716 GAGATGGTTGGGCAGGCT 59.320 61.111 0.00 0.00 0.00 4.58
122 123 2.440980 GGAGATGGTTGGGCAGGC 60.441 66.667 0.00 0.00 0.00 4.85
123 124 2.124570 CGGAGATGGTTGGGCAGG 60.125 66.667 0.00 0.00 0.00 4.85
124 125 2.825836 GCGGAGATGGTTGGGCAG 60.826 66.667 0.00 0.00 0.00 4.85
125 126 4.776322 CGCGGAGATGGTTGGGCA 62.776 66.667 0.00 0.00 0.00 5.36
134 135 4.853142 TAGGTGGGCCGCGGAGAT 62.853 66.667 33.48 10.22 40.50 2.75
140 141 3.682292 CTCAACCTAGGTGGGCCGC 62.682 68.421 17.14 9.05 41.11 6.53
141 142 2.584608 CTCAACCTAGGTGGGCCG 59.415 66.667 17.14 0.82 41.11 6.13
142 143 2.272471 GCTCAACCTAGGTGGGCC 59.728 66.667 17.14 3.15 41.11 5.80
143 144 2.272471 GGCTCAACCTAGGTGGGC 59.728 66.667 17.14 19.87 41.11 5.36
144 145 1.604378 CTGGCTCAACCTAGGTGGG 59.396 63.158 17.14 11.44 41.11 4.61
145 146 1.078143 GCTGGCTCAACCTAGGTGG 60.078 63.158 17.14 13.65 40.22 4.61
146 147 1.078143 GGCTGGCTCAACCTAGGTG 60.078 63.158 17.14 10.04 40.22 4.00
147 148 0.042731 TAGGCTGGCTCAACCTAGGT 59.957 55.000 9.21 9.21 40.22 3.08
148 149 0.466124 GTAGGCTGGCTCAACCTAGG 59.534 60.000 7.13 7.41 33.53 3.02
149 150 1.490574 AGTAGGCTGGCTCAACCTAG 58.509 55.000 7.13 0.00 33.53 3.02
150 151 1.952621 AAGTAGGCTGGCTCAACCTA 58.047 50.000 7.13 1.52 40.22 3.08
151 152 1.952621 TAAGTAGGCTGGCTCAACCT 58.047 50.000 7.13 3.17 40.22 3.50
152 153 2.633488 CTTAAGTAGGCTGGCTCAACC 58.367 52.381 7.13 0.00 39.84 3.77
153 154 2.633488 CCTTAAGTAGGCTGGCTCAAC 58.367 52.381 7.13 0.87 37.17 3.18
163 164 4.333352 CCACTGGTGGGCCTTAAGTAGG 62.333 59.091 11.62 6.20 46.81 3.18
164 165 1.065418 CCACTGGTGGGCCTTAAGTAG 60.065 57.143 11.62 0.00 46.81 2.57
165 166 0.988832 CCACTGGTGGGCCTTAAGTA 59.011 55.000 11.62 0.00 46.81 2.24
166 167 1.767692 CCACTGGTGGGCCTTAAGT 59.232 57.895 11.62 2.10 46.81 2.24
167 168 4.743018 CCACTGGTGGGCCTTAAG 57.257 61.111 11.62 1.39 46.81 1.85
176 177 3.329889 TAGGGCAGGCCACTGGTG 61.330 66.667 16.94 0.00 45.04 4.17
177 178 3.011517 CTAGGGCAGGCCACTGGT 61.012 66.667 16.94 0.00 45.04 4.00
178 179 4.496336 GCTAGGGCAGGCCACTGG 62.496 72.222 16.94 11.17 45.04 4.00
180 181 3.406200 CAGCTAGGGCAGGCCACT 61.406 66.667 16.94 6.59 41.70 4.00
181 182 4.496336 CCAGCTAGGGCAGGCCAC 62.496 72.222 16.94 4.07 38.26 5.01
207 208 4.162690 GAGGGGTGTAGCGGCTGG 62.163 72.222 13.86 0.00 0.00 4.85
208 209 3.390521 TGAGGGGTGTAGCGGCTG 61.391 66.667 13.86 0.00 0.00 4.85
209 210 3.391382 GTGAGGGGTGTAGCGGCT 61.391 66.667 7.98 7.98 0.00 5.52
210 211 4.468689 GGTGAGGGGTGTAGCGGC 62.469 72.222 0.00 0.00 0.00 6.53
211 212 3.782443 GGGTGAGGGGTGTAGCGG 61.782 72.222 0.00 0.00 0.00 5.52
212 213 4.143333 CGGGTGAGGGGTGTAGCG 62.143 72.222 0.00 0.00 0.00 4.26
213 214 3.001406 ACGGGTGAGGGGTGTAGC 61.001 66.667 0.00 0.00 0.00 3.58
214 215 2.707849 CGACGGGTGAGGGGTGTAG 61.708 68.421 0.00 0.00 0.00 2.74
215 216 2.503846 ATCGACGGGTGAGGGGTGTA 62.504 60.000 0.00 0.00 0.00 2.90
216 217 3.899545 ATCGACGGGTGAGGGGTGT 62.900 63.158 0.00 0.00 0.00 4.16
217 218 3.075005 ATCGACGGGTGAGGGGTG 61.075 66.667 0.00 0.00 0.00 4.61
218 219 2.758737 GATCGACGGGTGAGGGGT 60.759 66.667 0.00 0.00 0.00 4.95
219 220 3.537874 GGATCGACGGGTGAGGGG 61.538 72.222 0.00 0.00 0.00 4.79
220 221 3.537874 GGGATCGACGGGTGAGGG 61.538 72.222 0.00 0.00 0.00 4.30
221 222 2.355986 TTGGGATCGACGGGTGAGG 61.356 63.158 0.00 0.00 0.00 3.86
222 223 1.153628 GTTGGGATCGACGGGTGAG 60.154 63.158 0.00 0.00 0.00 3.51
223 224 1.189524 AAGTTGGGATCGACGGGTGA 61.190 55.000 0.00 0.00 32.56 4.02
224 225 0.321298 AAAGTTGGGATCGACGGGTG 60.321 55.000 0.00 0.00 32.56 4.61
225 226 0.036671 GAAAGTTGGGATCGACGGGT 60.037 55.000 0.00 0.00 32.56 5.28
226 227 0.249398 AGAAAGTTGGGATCGACGGG 59.751 55.000 0.00 0.00 32.56 5.28
227 228 1.641577 GAGAAAGTTGGGATCGACGG 58.358 55.000 0.00 0.00 32.56 4.79
228 229 1.641577 GGAGAAAGTTGGGATCGACG 58.358 55.000 0.00 0.00 32.56 5.12
229 230 1.555533 AGGGAGAAAGTTGGGATCGAC 59.444 52.381 0.00 0.00 0.00 4.20
230 231 1.831736 GAGGGAGAAAGTTGGGATCGA 59.168 52.381 0.00 0.00 0.00 3.59
231 232 1.134371 GGAGGGAGAAAGTTGGGATCG 60.134 57.143 0.00 0.00 0.00 3.69
232 233 1.134371 CGGAGGGAGAAAGTTGGGATC 60.134 57.143 0.00 0.00 0.00 3.36
233 234 0.912486 CGGAGGGAGAAAGTTGGGAT 59.088 55.000 0.00 0.00 0.00 3.85
234 235 1.838073 GCGGAGGGAGAAAGTTGGGA 61.838 60.000 0.00 0.00 0.00 4.37
235 236 1.377333 GCGGAGGGAGAAAGTTGGG 60.377 63.158 0.00 0.00 0.00 4.12
236 237 0.674895 CAGCGGAGGGAGAAAGTTGG 60.675 60.000 0.00 0.00 0.00 3.77
237 238 1.301677 GCAGCGGAGGGAGAAAGTTG 61.302 60.000 0.00 0.00 0.00 3.16
238 239 1.003233 GCAGCGGAGGGAGAAAGTT 60.003 57.895 0.00 0.00 0.00 2.66
239 240 2.665603 GCAGCGGAGGGAGAAAGT 59.334 61.111 0.00 0.00 0.00 2.66
240 241 2.124942 GGCAGCGGAGGGAGAAAG 60.125 66.667 0.00 0.00 0.00 2.62
241 242 2.927856 TGGCAGCGGAGGGAGAAA 60.928 61.111 0.00 0.00 0.00 2.52
242 243 3.393970 CTGGCAGCGGAGGGAGAA 61.394 66.667 0.00 0.00 0.00 2.87
253 254 4.899239 GGGATCGGACGCTGGCAG 62.899 72.222 10.94 10.94 0.00 4.85
256 257 3.917760 GAGGGGATCGGACGCTGG 61.918 72.222 0.00 0.00 0.00 4.85
265 266 0.887933 GAGAGATGAGCGAGGGGATC 59.112 60.000 0.00 0.00 0.00 3.36
266 267 0.541764 GGAGAGATGAGCGAGGGGAT 60.542 60.000 0.00 0.00 0.00 3.85
267 268 1.152652 GGAGAGATGAGCGAGGGGA 60.153 63.158 0.00 0.00 0.00 4.81
268 269 2.206536 GGGAGAGATGAGCGAGGGG 61.207 68.421 0.00 0.00 0.00 4.79
269 270 2.206536 GGGGAGAGATGAGCGAGGG 61.207 68.421 0.00 0.00 0.00 4.30
270 271 0.758685 AAGGGGAGAGATGAGCGAGG 60.759 60.000 0.00 0.00 0.00 4.63
271 272 0.673437 GAAGGGGAGAGATGAGCGAG 59.327 60.000 0.00 0.00 0.00 5.03
272 273 1.103987 CGAAGGGGAGAGATGAGCGA 61.104 60.000 0.00 0.00 0.00 4.93
273 274 1.361993 CGAAGGGGAGAGATGAGCG 59.638 63.158 0.00 0.00 0.00 5.03
274 275 0.387565 GACGAAGGGGAGAGATGAGC 59.612 60.000 0.00 0.00 0.00 4.26
275 276 1.036707 GGACGAAGGGGAGAGATGAG 58.963 60.000 0.00 0.00 0.00 2.90
276 277 0.631753 AGGACGAAGGGGAGAGATGA 59.368 55.000 0.00 0.00 0.00 2.92
277 278 1.036707 GAGGACGAAGGGGAGAGATG 58.963 60.000 0.00 0.00 0.00 2.90
278 279 0.105913 GGAGGACGAAGGGGAGAGAT 60.106 60.000 0.00 0.00 0.00 2.75
279 280 1.215679 AGGAGGACGAAGGGGAGAGA 61.216 60.000 0.00 0.00 0.00 3.10
280 281 0.753848 GAGGAGGACGAAGGGGAGAG 60.754 65.000 0.00 0.00 0.00 3.20
281 282 1.215679 AGAGGAGGACGAAGGGGAGA 61.216 60.000 0.00 0.00 0.00 3.71
282 283 1.040339 CAGAGGAGGACGAAGGGGAG 61.040 65.000 0.00 0.00 0.00 4.30
283 284 1.000486 CAGAGGAGGACGAAGGGGA 60.000 63.158 0.00 0.00 0.00 4.81
284 285 2.060980 CCAGAGGAGGACGAAGGGG 61.061 68.421 0.00 0.00 0.00 4.79
285 286 2.726351 GCCAGAGGAGGACGAAGGG 61.726 68.421 0.00 0.00 0.00 3.95
286 287 1.984570 TGCCAGAGGAGGACGAAGG 60.985 63.158 0.00 0.00 0.00 3.46
287 288 1.216710 GTGCCAGAGGAGGACGAAG 59.783 63.158 0.00 0.00 0.00 3.79
288 289 2.283529 GGTGCCAGAGGAGGACGAA 61.284 63.158 0.00 0.00 0.00 3.85
289 290 2.680352 GGTGCCAGAGGAGGACGA 60.680 66.667 0.00 0.00 0.00 4.20
290 291 4.135153 CGGTGCCAGAGGAGGACG 62.135 72.222 0.00 0.00 0.00 4.79
291 292 4.459089 GCGGTGCCAGAGGAGGAC 62.459 72.222 0.00 0.00 0.00 3.85
292 293 4.704103 AGCGGTGCCAGAGGAGGA 62.704 66.667 0.00 0.00 0.00 3.71
293 294 4.154347 GAGCGGTGCCAGAGGAGG 62.154 72.222 0.00 0.00 0.00 4.30
294 295 4.154347 GGAGCGGTGCCAGAGGAG 62.154 72.222 0.00 0.00 0.00 3.69
295 296 4.704103 AGGAGCGGTGCCAGAGGA 62.704 66.667 1.29 0.00 0.00 3.71
296 297 4.154347 GAGGAGCGGTGCCAGAGG 62.154 72.222 1.29 0.00 0.00 3.69
297 298 3.073735 AGAGGAGCGGTGCCAGAG 61.074 66.667 1.29 0.00 0.00 3.35
298 299 3.071206 GAGAGGAGCGGTGCCAGA 61.071 66.667 1.29 0.00 0.00 3.86
299 300 3.073735 AGAGAGGAGCGGTGCCAG 61.074 66.667 1.29 0.00 0.00 4.85
300 301 3.071206 GAGAGAGGAGCGGTGCCA 61.071 66.667 1.29 0.00 0.00 4.92
301 302 3.844090 GGAGAGAGGAGCGGTGCC 61.844 72.222 1.29 0.00 0.00 5.01
302 303 2.757917 AGGAGAGAGGAGCGGTGC 60.758 66.667 0.00 0.00 0.00 5.01
303 304 1.077068 AGAGGAGAGAGGAGCGGTG 60.077 63.158 0.00 0.00 0.00 4.94
304 305 1.226262 GAGAGGAGAGAGGAGCGGT 59.774 63.158 0.00 0.00 0.00 5.68
305 306 1.891919 CGAGAGGAGAGAGGAGCGG 60.892 68.421 0.00 0.00 0.00 5.52
306 307 2.542907 GCGAGAGGAGAGAGGAGCG 61.543 68.421 0.00 0.00 0.00 5.03
307 308 1.152963 AGCGAGAGGAGAGAGGAGC 60.153 63.158 0.00 0.00 0.00 4.70
308 309 0.469917 AGAGCGAGAGGAGAGAGGAG 59.530 60.000 0.00 0.00 0.00 3.69
309 310 0.468226 GAGAGCGAGAGGAGAGAGGA 59.532 60.000 0.00 0.00 0.00 3.71
310 311 0.469917 AGAGAGCGAGAGGAGAGAGG 59.530 60.000 0.00 0.00 0.00 3.69
311 312 1.541233 GGAGAGAGCGAGAGGAGAGAG 60.541 61.905 0.00 0.00 0.00 3.20
312 313 0.468226 GGAGAGAGCGAGAGGAGAGA 59.532 60.000 0.00 0.00 0.00 3.10
313 314 0.535102 GGGAGAGAGCGAGAGGAGAG 60.535 65.000 0.00 0.00 0.00 3.20
314 315 0.986019 AGGGAGAGAGCGAGAGGAGA 60.986 60.000 0.00 0.00 0.00 3.71
315 316 0.535102 GAGGGAGAGAGCGAGAGGAG 60.535 65.000 0.00 0.00 0.00 3.69
316 317 1.529796 GAGGGAGAGAGCGAGAGGA 59.470 63.158 0.00 0.00 0.00 3.71
317 318 1.891919 CGAGGGAGAGAGCGAGAGG 60.892 68.421 0.00 0.00 0.00 3.69
318 319 2.542907 GCGAGGGAGAGAGCGAGAG 61.543 68.421 0.00 0.00 0.00 3.20
319 320 2.515057 GCGAGGGAGAGAGCGAGA 60.515 66.667 0.00 0.00 0.00 4.04
320 321 3.591835 GGCGAGGGAGAGAGCGAG 61.592 72.222 0.00 0.00 0.00 5.03
323 324 1.531739 CTATGGGCGAGGGAGAGAGC 61.532 65.000 0.00 0.00 0.00 4.09
324 325 1.531739 GCTATGGGCGAGGGAGAGAG 61.532 65.000 0.00 0.00 0.00 3.20
325 326 1.531840 GCTATGGGCGAGGGAGAGA 60.532 63.158 0.00 0.00 0.00 3.10
326 327 1.834378 TGCTATGGGCGAGGGAGAG 60.834 63.158 0.00 0.00 45.43 3.20
327 328 2.134287 GTGCTATGGGCGAGGGAGA 61.134 63.158 0.00 0.00 45.43 3.71
328 329 2.423446 GTGCTATGGGCGAGGGAG 59.577 66.667 0.00 0.00 45.43 4.30
329 330 3.161450 GGTGCTATGGGCGAGGGA 61.161 66.667 0.00 0.00 45.43 4.20
330 331 4.609018 CGGTGCTATGGGCGAGGG 62.609 72.222 0.00 0.00 45.43 4.30
331 332 4.609018 CCGGTGCTATGGGCGAGG 62.609 72.222 0.00 0.00 45.43 4.63
336 337 4.256180 GGAGGCCGGTGCTATGGG 62.256 72.222 1.90 0.00 37.74 4.00
337 338 4.256180 GGGAGGCCGGTGCTATGG 62.256 72.222 1.90 0.00 37.74 2.74
338 339 4.256180 GGGGAGGCCGGTGCTATG 62.256 72.222 1.90 0.00 37.74 2.23
400 401 1.233659 GGGAGAGGGAGGAGGGTAC 59.766 68.421 0.00 0.00 0.00 3.34
402 403 1.949449 ATGGGAGAGGGAGGAGGGT 60.949 63.158 0.00 0.00 0.00 4.34
626 635 1.299648 CGAGGCAGGGGAACAATGA 59.700 57.895 0.00 0.00 0.00 2.57
628 637 1.299976 GACGAGGCAGGGGAACAAT 59.700 57.895 0.00 0.00 0.00 2.71
629 638 2.747686 GACGAGGCAGGGGAACAA 59.252 61.111 0.00 0.00 0.00 2.83
714 723 2.262915 GACCTGTGGTGCTCCTCG 59.737 66.667 6.34 0.00 35.25 4.63
828 837 2.589442 GTGGTCGTTGGCGGACAA 60.589 61.111 0.00 0.00 38.89 3.18
837 846 2.140792 AGTGCTCCTGGTGGTCGTT 61.141 57.895 0.00 0.00 34.23 3.85
857 866 4.329545 GCACCGAGGTGGAGGCAA 62.330 66.667 22.19 0.00 45.49 4.52
945 955 0.595825 GCAAGATTAATGCAGCGGCC 60.596 55.000 6.32 0.00 43.29 6.13
963 973 1.080298 GAAATGTGCTGCACCAGGC 60.080 57.895 28.17 12.71 45.13 4.85
1051 1061 3.055312 GGTCTTGATAGTTCGAAGGGGTT 60.055 47.826 0.00 0.00 0.00 4.11
1348 1564 1.011333 CGGTCTTGACGTTTTGGTGT 58.989 50.000 0.00 0.00 0.00 4.16
1508 1724 4.502171 GGGACGGTAGTAGAAATAGAGC 57.498 50.000 0.00 0.00 0.00 4.09
1811 2028 3.815401 GCAAAGGATAAGTGTGCGGATAT 59.185 43.478 0.00 0.00 0.00 1.63
1812 2029 3.202906 GCAAAGGATAAGTGTGCGGATA 58.797 45.455 0.00 0.00 0.00 2.59
1825 2042 3.071874 TGAGAAACCGATGCAAAGGAT 57.928 42.857 16.49 2.99 0.00 3.24
2053 2278 3.752747 ACAATTTCGGTAAAACCCCGTAG 59.247 43.478 0.00 0.00 45.63 3.51
2056 2281 3.310246 CAACAATTTCGGTAAAACCCCG 58.690 45.455 0.00 0.00 46.83 5.73
2078 2303 3.369546 AAATGAGGCCGAAACAACAAG 57.630 42.857 0.00 0.00 0.00 3.16
2089 2314 5.400066 TTTAGGCAAGTTTAAATGAGGCC 57.600 39.130 12.50 12.50 40.18 5.19
2091 2316 8.831715 AAACATTTAGGCAAGTTTAAATGAGG 57.168 30.769 18.77 1.49 44.34 3.86
2115 2341 7.119262 GCAAGAGGTGAAGCATAAGTAAACTAA 59.881 37.037 0.00 0.00 0.00 2.24
2205 2431 4.143115 CGAGTTGCATATTGACGAAACACT 60.143 41.667 0.00 0.00 0.00 3.55
2336 2567 8.984891 ACAACATAATAAACAACCATCACATG 57.015 30.769 0.00 0.00 0.00 3.21
2371 2605 1.237285 CCAGAAGAAGCAACACCGGG 61.237 60.000 6.32 0.00 0.00 5.73
2500 2734 7.061557 GCAAGCAAAGATAGAAGTGATTTCAAC 59.938 37.037 0.00 0.00 38.31 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.