Multiple sequence alignment - TraesCS4A01G146100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G146100 chr4A 100.000 2405 0 0 1 2405 253446917 253444513 0.000000e+00 4442
1 TraesCS4A01G146100 chr4B 91.977 1720 53 33 240 1906 221200276 221198589 0.000000e+00 2333
2 TraesCS4A01G146100 chr4B 90.287 453 29 9 1956 2400 221198323 221197878 1.600000e-161 579
3 TraesCS4A01G146100 chr4B 92.500 120 5 2 125 242 221202181 221202064 4.110000e-38 169
4 TraesCS4A01G146100 chr4D 90.011 1842 63 39 644 2405 151983895 151982095 0.000000e+00 2270
5 TraesCS4A01G146100 chr4D 88.342 549 19 29 1 507 151984856 151984311 3.400000e-173 617


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G146100 chr4A 253444513 253446917 2404 True 4442.0 4442 100.0000 1 2405 1 chr4A.!!$R1 2404
1 TraesCS4A01G146100 chr4B 221197878 221202181 4303 True 1027.0 2333 91.5880 125 2400 3 chr4B.!!$R1 2275
2 TraesCS4A01G146100 chr4D 151982095 151984856 2761 True 1443.5 2270 89.1765 1 2405 2 chr4D.!!$R1 2404

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
99 103 0.038744 AGTTCCCACTCCTGGCATTG 59.961 55.0 0.0 0.0 36.00 2.82 F
992 3139 2.106511 TCAACAAGAGTTTGGAGAGGGG 59.893 50.0 0.0 0.0 38.66 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1215 3371 0.179234 TGTTGTTGTTGAGCTCCCGA 59.821 50.0 12.15 0.0 0.0 5.14 R
2307 4736 1.046472 ACCCGTTGACACTGTCCAGA 61.046 55.0 6.72 0.0 0.0 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 1.344114 TGAGGGAATTTGTTGCCTTGC 59.656 47.619 2.71 0.00 43.18 4.01
49 50 2.554142 GGGCAATAAAATCCAGCTTGC 58.446 47.619 0.00 0.00 41.04 4.01
69 73 3.251571 GCTCTTCTTTATCGTTCGGTGT 58.748 45.455 0.00 0.00 0.00 4.16
91 95 1.528129 CTGCTTTCAGTTCCCACTCC 58.472 55.000 0.00 0.00 35.61 3.85
99 103 0.038744 AGTTCCCACTCCTGGCATTG 59.961 55.000 0.00 0.00 36.00 2.82
210 246 2.672996 CAACACAGGCGGAAGGGG 60.673 66.667 0.00 0.00 0.00 4.79
314 2150 5.398353 CCATCTCTTCCTCTCTCTCTCTCTT 60.398 48.000 0.00 0.00 0.00 2.85
359 2200 4.044065 AGAAGAAAGAGGGACAGAGAGAGA 59.956 45.833 0.00 0.00 0.00 3.10
360 2201 3.968265 AGAAAGAGGGACAGAGAGAGAG 58.032 50.000 0.00 0.00 0.00 3.20
542 2384 7.448748 ACATTTGTTTTGGTGAGTCCTATAC 57.551 36.000 0.00 0.00 37.07 1.47
567 2409 7.657354 ACAATCTTTCCCTTCTTTTTATGTTGC 59.343 33.333 0.00 0.00 0.00 4.17
698 2827 5.656416 CCCCTGATGCTTGGTTATTTTCTAA 59.344 40.000 0.00 0.00 0.00 2.10
746 2875 4.531854 TGTCTTGGGTTTCATCTTCACAA 58.468 39.130 0.00 0.00 0.00 3.33
750 2879 3.164268 TGGGTTTCATCTTCACAATGGG 58.836 45.455 0.00 0.00 0.00 4.00
761 2890 2.314246 TCACAATGGGTTTCACATGCA 58.686 42.857 0.00 0.00 0.00 3.96
762 2891 2.296752 TCACAATGGGTTTCACATGCAG 59.703 45.455 0.00 0.00 0.00 4.41
763 2892 2.296752 CACAATGGGTTTCACATGCAGA 59.703 45.455 0.00 0.00 0.00 4.26
764 2893 3.056393 CACAATGGGTTTCACATGCAGAT 60.056 43.478 0.00 0.00 0.00 2.90
765 2894 3.579586 ACAATGGGTTTCACATGCAGATT 59.420 39.130 0.00 0.00 0.00 2.40
766 2895 4.040706 ACAATGGGTTTCACATGCAGATTT 59.959 37.500 0.00 0.00 0.00 2.17
767 2896 4.895668 ATGGGTTTCACATGCAGATTTT 57.104 36.364 0.00 0.00 0.00 1.82
768 2897 4.686191 TGGGTTTCACATGCAGATTTTT 57.314 36.364 0.00 0.00 0.00 1.94
874 3017 6.607019 TGGGTCTTTATTTGTTTCCAGTACT 58.393 36.000 0.00 0.00 0.00 2.73
966 3109 2.622942 CTCTAGCTAGCTCTGGTGAAGG 59.377 54.545 23.26 1.85 0.00 3.46
992 3139 2.106511 TCAACAAGAGTTTGGAGAGGGG 59.893 50.000 0.00 0.00 38.66 4.79
993 3140 2.106511 CAACAAGAGTTTGGAGAGGGGA 59.893 50.000 0.00 0.00 38.66 4.81
1215 3371 3.856508 CGCAACGTCGGACTCATT 58.143 55.556 6.57 0.00 0.00 2.57
1269 3425 2.188161 CCTCTACGCCGACCTCTCC 61.188 68.421 0.00 0.00 0.00 3.71
1326 3482 3.707640 CTCCTCGGAGGGCGACTCT 62.708 68.421 23.39 0.00 45.83 3.24
1395 3551 4.415332 GGACAGAAGCGCGTCCGA 62.415 66.667 19.90 0.00 42.19 4.55
1457 3613 2.643272 CATCGCCATGGATGCTGC 59.357 61.111 18.40 0.00 37.59 5.25
1458 3614 2.190841 CATCGCCATGGATGCTGCA 61.191 57.895 18.40 4.13 37.59 4.41
1548 3713 6.266330 AGTTCTTCCTTGCTTAATTTCTTGCT 59.734 34.615 0.00 0.00 0.00 3.91
1579 3747 2.976271 CTTTGCCGCAAAGTGCTTT 58.024 47.368 29.91 0.00 43.85 3.51
1581 3749 1.258720 CTTTGCCGCAAAGTGCTTTTC 59.741 47.619 29.91 0.00 43.85 2.29
1583 3751 1.363807 GCCGCAAAGTGCTTTTCCT 59.636 52.632 0.00 0.00 42.25 3.36
1584 3752 0.664466 GCCGCAAAGTGCTTTTCCTC 60.664 55.000 0.00 0.00 42.25 3.71
1585 3753 0.667993 CCGCAAAGTGCTTTTCCTCA 59.332 50.000 0.00 0.00 42.25 3.86
1586 3754 1.066908 CCGCAAAGTGCTTTTCCTCAA 59.933 47.619 0.00 0.00 42.25 3.02
1587 3755 2.119457 CGCAAAGTGCTTTTCCTCAAC 58.881 47.619 0.00 0.00 42.25 3.18
1590 3758 2.695147 CAAAGTGCTTTTCCTCAACCCT 59.305 45.455 0.00 0.00 0.00 4.34
1606 3774 4.584325 TCAACCCTTGATGGTGAGAAAAAG 59.416 41.667 0.00 0.00 39.05 2.27
1607 3775 3.500343 ACCCTTGATGGTGAGAAAAAGG 58.500 45.455 0.00 0.00 37.20 3.11
1694 3863 7.332182 GCAGCCTTACTATTACATGTAGAATCC 59.668 40.741 5.56 0.00 0.00 3.01
1696 3865 8.368668 AGCCTTACTATTACATGTAGAATCCAC 58.631 37.037 5.56 0.00 0.00 4.02
1697 3866 7.603024 GCCTTACTATTACATGTAGAATCCACC 59.397 40.741 5.56 0.00 0.00 4.61
1698 3867 7.813148 CCTTACTATTACATGTAGAATCCACCG 59.187 40.741 5.56 0.00 0.00 4.94
1699 3868 6.726490 ACTATTACATGTAGAATCCACCGT 57.274 37.500 5.56 0.00 0.00 4.83
1700 3869 7.120923 ACTATTACATGTAGAATCCACCGTT 57.879 36.000 5.56 0.00 0.00 4.44
1702 3871 3.261981 ACATGTAGAATCCACCGTTCC 57.738 47.619 0.00 0.00 0.00 3.62
1703 3872 2.569853 ACATGTAGAATCCACCGTTCCA 59.430 45.455 0.00 0.00 0.00 3.53
1704 3873 3.199946 ACATGTAGAATCCACCGTTCCAT 59.800 43.478 0.00 0.00 0.00 3.41
1705 3874 3.260475 TGTAGAATCCACCGTTCCATG 57.740 47.619 0.00 0.00 0.00 3.66
1706 3875 2.093181 TGTAGAATCCACCGTTCCATGG 60.093 50.000 4.97 4.97 37.32 3.66
1708 3877 1.379843 AATCCACCGTTCCATGGGC 60.380 57.895 13.02 4.47 36.56 5.36
1711 3880 2.438434 CACCGTTCCATGGGCTCC 60.438 66.667 13.02 0.00 0.00 4.70
1712 3881 2.610859 ACCGTTCCATGGGCTCCT 60.611 61.111 13.02 0.00 0.00 3.69
1713 3882 2.124570 CCGTTCCATGGGCTCCTG 60.125 66.667 13.02 0.00 0.00 3.86
1715 3884 2.440980 GTTCCATGGGCTCCTGGC 60.441 66.667 13.02 0.00 40.90 4.85
1717 3886 2.987596 TTCCATGGGCTCCTGGCTG 61.988 63.158 13.02 0.00 41.46 4.85
1740 3930 5.128499 TGATCTGAGAGATTTGGGAGTTCTC 59.872 44.000 0.00 0.00 34.53 2.87
1757 3951 7.764901 GGGAGTTCTCGAGTATTTTGTTCTTAT 59.235 37.037 13.13 0.00 0.00 1.73
1798 3996 2.171448 CTCTAGGTGATTTGTGAGGGGG 59.829 54.545 0.00 0.00 0.00 5.40
1846 4045 1.770658 TGGATGGACCATGTGATCCTC 59.229 52.381 12.99 0.00 44.64 3.71
1974 4394 6.029346 ACCATGATGAAAAGTTTGATGACC 57.971 37.500 0.00 0.00 0.00 4.02
1975 4395 5.539574 ACCATGATGAAAAGTTTGATGACCA 59.460 36.000 0.00 0.00 0.00 4.02
1976 4396 6.041865 ACCATGATGAAAAGTTTGATGACCAA 59.958 34.615 0.00 0.00 0.00 3.67
1977 4397 6.930164 CCATGATGAAAAGTTTGATGACCAAA 59.070 34.615 0.00 0.00 42.07 3.28
1991 4411 3.390135 TGACCAAACGACTTGCTTCTAG 58.610 45.455 0.00 0.00 33.27 2.43
2046 4466 4.422057 TGGTGGAGTGTAGATAAGGTTCA 58.578 43.478 0.00 0.00 0.00 3.18
2060 4480 1.688197 AGGTTCACCTTTTGTGCATGG 59.312 47.619 0.00 0.00 46.09 3.66
2062 4482 1.117994 TTCACCTTTTGTGCATGGCA 58.882 45.000 0.00 0.00 45.03 4.92
2102 4522 3.680777 TGGGGGTGTTCTTTCTTTCTT 57.319 42.857 0.00 0.00 0.00 2.52
2103 4523 3.989056 TGGGGGTGTTCTTTCTTTCTTT 58.011 40.909 0.00 0.00 0.00 2.52
2104 4524 3.958147 TGGGGGTGTTCTTTCTTTCTTTC 59.042 43.478 0.00 0.00 0.00 2.62
2105 4525 4.215908 GGGGGTGTTCTTTCTTTCTTTCT 58.784 43.478 0.00 0.00 0.00 2.52
2210 4634 3.744238 AGTTTACAAAACCATGGCCAC 57.256 42.857 8.16 0.00 0.00 5.01
2228 4652 4.096984 GGCCACAATCTTATTTGAGACAGG 59.903 45.833 0.00 0.00 0.00 4.00
2272 4700 3.892588 GTCTTTCTCGGTCCCTGATCTAT 59.107 47.826 0.00 0.00 0.00 1.98
2273 4701 5.071370 GTCTTTCTCGGTCCCTGATCTATA 58.929 45.833 0.00 0.00 0.00 1.31
2287 4715 8.122481 TCCCTGATCTATAAGCATATGAACCTA 58.878 37.037 6.97 0.00 0.00 3.08
2297 4726 6.006275 AGCATATGAACCTATTGACCACTT 57.994 37.500 6.97 0.00 0.00 3.16
2307 4736 5.957774 ACCTATTGACCACTTATTTGGCATT 59.042 36.000 0.00 0.00 40.77 3.56
2322 4751 1.537202 GGCATTCTGGACAGTGTCAAC 59.463 52.381 24.20 8.94 33.68 3.18
2338 4767 0.319469 CAACGGGTGCCCATTTGTTC 60.319 55.000 8.14 0.00 35.37 3.18
2368 4797 3.627123 ACGGTAACAAACCCAACAAGTAC 59.373 43.478 0.00 0.00 46.62 2.73
2378 4807 4.087907 ACCCAACAAGTACTCTACCTCTC 58.912 47.826 0.00 0.00 0.00 3.20
2380 4809 4.399934 CCCAACAAGTACTCTACCTCTCTC 59.600 50.000 0.00 0.00 0.00 3.20
2382 4811 6.416415 CCAACAAGTACTCTACCTCTCTCTA 58.584 44.000 0.00 0.00 0.00 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 2.145536 CCCAAGCAAGGCAACAAATTC 58.854 47.619 0.00 0.00 41.41 2.17
11 12 1.202794 CCCCAAGCAAGGCAACAAATT 60.203 47.619 0.00 0.00 41.41 1.82
25 26 2.767960 AGCTGGATTTTATTGCCCCAAG 59.232 45.455 0.00 0.00 0.00 3.61
49 50 4.434330 GCAACACCGAACGATAAAGAAGAG 60.434 45.833 0.00 0.00 0.00 2.85
69 73 1.032014 GTGGGAACTGAAAGCAGCAA 58.968 50.000 0.00 0.00 46.26 3.91
99 103 4.410400 CCCTCCCGTGGGCAGAAC 62.410 72.222 0.00 0.00 40.84 3.01
167 203 1.446445 CCCACATTTGCATGCACCG 60.446 57.895 22.58 14.11 33.05 4.94
269 2097 0.480252 AGGACAAGCAAGCCTTTCCT 59.520 50.000 0.00 0.00 36.80 3.36
314 2150 2.374184 CCAGAAACCACACACAAGGAA 58.626 47.619 0.00 0.00 0.00 3.36
359 2200 3.173151 CCTTGCCCACCTTTTTATTCCT 58.827 45.455 0.00 0.00 0.00 3.36
360 2201 3.056107 GTCCTTGCCCACCTTTTTATTCC 60.056 47.826 0.00 0.00 0.00 3.01
542 2384 7.874528 AGCAACATAAAAAGAAGGGAAAGATTG 59.125 33.333 0.00 0.00 0.00 2.67
584 2426 3.587797 AGAAGTTGAAATACGAGCGGA 57.412 42.857 0.00 0.00 0.00 5.54
585 2427 3.678072 TCAAGAAGTTGAAATACGAGCGG 59.322 43.478 0.00 0.00 39.85 5.52
698 2827 6.385766 AAATCACCTCTCTGAATTTCCTCT 57.614 37.500 0.00 0.00 0.00 3.69
746 2875 4.895668 AAAATCTGCATGTGAAACCCAT 57.104 36.364 0.00 0.00 34.36 4.00
767 2896 0.250381 TCGAGGCAGCGGGTTAAAAA 60.250 50.000 0.09 0.00 0.00 1.94
768 2897 0.035820 ATCGAGGCAGCGGGTTAAAA 60.036 50.000 0.00 0.00 0.00 1.52
769 2898 0.035820 AATCGAGGCAGCGGGTTAAA 60.036 50.000 0.00 0.00 0.00 1.52
770 2899 0.742990 CAATCGAGGCAGCGGGTTAA 60.743 55.000 0.00 0.00 0.00 2.01
771 2900 1.153449 CAATCGAGGCAGCGGGTTA 60.153 57.895 0.00 0.00 0.00 2.85
874 3017 0.850100 ATTTATGTGGGGATCGGGCA 59.150 50.000 0.00 0.00 0.00 5.36
966 3109 5.411053 CCTCTCCAAACTCTTGTTGATTCTC 59.589 44.000 0.00 0.00 36.39 2.87
992 3139 1.065418 TCTCGCCTTCCATCCCTTTTC 60.065 52.381 0.00 0.00 0.00 2.29
993 3140 0.991920 TCTCGCCTTCCATCCCTTTT 59.008 50.000 0.00 0.00 0.00 2.27
1209 3365 0.976641 TGTTGAGCTCCCGAATGAGT 59.023 50.000 12.15 0.00 34.74 3.41
1215 3371 0.179234 TGTTGTTGTTGAGCTCCCGA 59.821 50.000 12.15 0.00 0.00 5.14
1457 3613 3.119316 ACTCACATCCTTTCTCGCTAGTG 60.119 47.826 0.00 0.00 0.00 2.74
1458 3614 3.093057 ACTCACATCCTTTCTCGCTAGT 58.907 45.455 0.00 0.00 0.00 2.57
1548 3713 1.603802 CGGCAAAGAAGAAGAAGCACA 59.396 47.619 0.00 0.00 0.00 4.57
1579 3747 2.040278 CTCACCATCAAGGGTTGAGGAA 59.960 50.000 2.99 0.00 43.68 3.36
1581 3749 1.630369 TCTCACCATCAAGGGTTGAGG 59.370 52.381 10.95 0.00 43.98 3.86
1583 3751 3.874383 TTTCTCACCATCAAGGGTTGA 57.126 42.857 0.00 0.00 45.01 3.18
1584 3752 4.262164 CCTTTTTCTCACCATCAAGGGTTG 60.262 45.833 0.00 0.00 43.89 3.77
1585 3753 3.897505 CCTTTTTCTCACCATCAAGGGTT 59.102 43.478 0.00 0.00 43.89 4.11
1586 3754 3.140144 TCCTTTTTCTCACCATCAAGGGT 59.860 43.478 0.00 0.00 43.89 4.34
1587 3755 3.766545 TCCTTTTTCTCACCATCAAGGG 58.233 45.455 0.00 0.00 43.89 3.95
1590 3758 6.790232 AGTTTTCCTTTTTCTCACCATCAA 57.210 33.333 0.00 0.00 0.00 2.57
1606 3774 6.445357 TGGACTTGTACAGAAAAGTTTTCC 57.555 37.500 21.92 9.45 36.77 3.13
1607 3775 7.432252 CACATGGACTTGTACAGAAAAGTTTTC 59.568 37.037 18.77 18.77 36.77 2.29
1662 3831 6.316390 ACATGTAATAGTAAGGCTGCAGTTTC 59.684 38.462 16.64 5.68 0.00 2.78
1665 3834 5.359194 ACATGTAATAGTAAGGCTGCAGT 57.641 39.130 16.64 0.00 0.00 4.40
1694 3863 2.438434 GGAGCCCATGGAACGGTG 60.438 66.667 15.22 0.00 0.00 4.94
1696 3865 2.124570 CAGGAGCCCATGGAACGG 60.125 66.667 15.22 0.00 0.00 4.44
1697 3866 2.124570 CCAGGAGCCCATGGAACG 60.125 66.667 15.22 0.00 39.02 3.95
1698 3867 2.440980 GCCAGGAGCCCATGGAAC 60.441 66.667 15.22 4.77 39.02 3.62
1699 3868 2.614969 AGCCAGGAGCCCATGGAA 60.615 61.111 15.22 0.00 45.47 3.53
1700 3869 3.414193 CAGCCAGGAGCCCATGGA 61.414 66.667 15.22 0.00 45.47 3.41
1702 3871 1.228184 GATCAGCCAGGAGCCCATG 60.228 63.158 0.00 0.00 45.47 3.66
1703 3872 1.385631 AGATCAGCCAGGAGCCCAT 60.386 57.895 0.00 0.00 45.47 4.00
1704 3873 2.041762 AGATCAGCCAGGAGCCCA 59.958 61.111 0.00 0.00 45.47 5.36
1705 3874 2.042404 CTCAGATCAGCCAGGAGCCC 62.042 65.000 0.00 0.00 45.47 5.19
1706 3875 1.047596 TCTCAGATCAGCCAGGAGCC 61.048 60.000 0.00 0.00 45.47 4.70
1708 3877 2.070305 TCTCTCAGATCAGCCAGGAG 57.930 55.000 0.00 0.00 0.00 3.69
1711 3880 3.468770 CCAAATCTCTCAGATCAGCCAG 58.531 50.000 0.00 0.00 32.89 4.85
1712 3881 2.172082 CCCAAATCTCTCAGATCAGCCA 59.828 50.000 0.00 0.00 32.89 4.75
1713 3882 2.437281 TCCCAAATCTCTCAGATCAGCC 59.563 50.000 0.00 0.00 32.89 4.85
1715 3884 5.129155 AGAACTCCCAAATCTCTCAGATCAG 59.871 44.000 0.00 0.00 32.89 2.90
1717 3886 5.600696 GAGAACTCCCAAATCTCTCAGATC 58.399 45.833 0.00 0.00 37.27 2.75
1798 3996 5.579119 CCAAGGGCAACGGTATTTTAATTTC 59.421 40.000 0.00 0.00 37.60 2.17
1921 4121 3.848975 AGGACAGAAGGGAAAGATGACAT 59.151 43.478 0.00 0.00 0.00 3.06
1974 4394 2.802816 AGCACTAGAAGCAAGTCGTTTG 59.197 45.455 12.97 0.00 39.88 2.93
1975 4395 3.113260 AGCACTAGAAGCAAGTCGTTT 57.887 42.857 12.97 0.00 0.00 3.60
1976 4396 2.821991 AGCACTAGAAGCAAGTCGTT 57.178 45.000 12.97 0.00 0.00 3.85
1977 4397 3.082548 TCTAGCACTAGAAGCAAGTCGT 58.917 45.455 4.90 0.00 39.08 4.34
1978 4398 3.766676 TCTAGCACTAGAAGCAAGTCG 57.233 47.619 4.90 0.00 39.08 4.18
2046 4466 1.485895 ACTTTGCCATGCACAAAAGGT 59.514 42.857 11.73 6.21 38.71 3.50
2102 4522 1.908619 TCTTGCAGATGCCCACTAGAA 59.091 47.619 1.72 0.00 41.18 2.10
2103 4523 1.571955 TCTTGCAGATGCCCACTAGA 58.428 50.000 1.72 0.00 41.18 2.43
2104 4524 2.219458 CATCTTGCAGATGCCCACTAG 58.781 52.381 11.52 0.00 44.69 2.57
2105 4525 2.336945 CATCTTGCAGATGCCCACTA 57.663 50.000 11.52 0.00 44.69 2.74
2210 4634 3.633986 GGCCCCTGTCTCAAATAAGATTG 59.366 47.826 0.00 0.00 0.00 2.67
2250 4678 2.104170 AGATCAGGGACCGAGAAAGAC 58.896 52.381 0.00 0.00 0.00 3.01
2272 4700 7.136822 AGTGGTCAATAGGTTCATATGCTTA 57.863 36.000 0.00 0.00 0.00 3.09
2273 4701 6.006275 AGTGGTCAATAGGTTCATATGCTT 57.994 37.500 0.00 0.00 0.00 3.91
2287 4715 5.105228 CCAGAATGCCAAATAAGTGGTCAAT 60.105 40.000 0.00 0.00 41.12 2.57
2297 4726 4.009675 GACACTGTCCAGAATGCCAAATA 58.990 43.478 0.40 0.00 31.97 1.40
2307 4736 1.046472 ACCCGTTGACACTGTCCAGA 61.046 55.000 6.72 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.