Multiple sequence alignment - TraesCS4A01G145200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G145200 chr4A 100.000 2646 0 0 1 2646 246681311 246678666 0.000000e+00 4887
1 TraesCS4A01G145200 chr4A 97.839 2406 50 2 1 2405 67603672 67601268 0.000000e+00 4154
2 TraesCS4A01G145200 chr4A 99.194 248 2 0 2399 2646 513264823 513264576 5.200000e-122 448
3 TraesCS4A01G145200 chr4A 96.552 261 9 0 2386 2646 547939531 547939791 1.450000e-117 433
4 TraesCS4A01G145200 chr7B 98.586 2405 34 0 1 2405 742996151 742993747 0.000000e+00 4253
5 TraesCS4A01G145200 chr7B 98.377 2403 38 1 1 2403 716872076 716874477 0.000000e+00 4220
6 TraesCS4A01G145200 chrUn 98.545 2405 35 0 1 2405 186201715 186204119 0.000000e+00 4248
7 TraesCS4A01G145200 chr7A 98.462 2405 37 0 1 2405 60286001 60283597 0.000000e+00 4237
8 TraesCS4A01G145200 chr1A 98.378 2405 36 2 1 2405 498684525 498686926 0.000000e+00 4222
9 TraesCS4A01G145200 chr1A 98.790 248 3 0 2399 2646 310457206 310457453 2.420000e-120 442
10 TraesCS4A01G145200 chr1A 98.790 248 3 0 2399 2646 382174734 382174981 2.420000e-120 442
11 TraesCS4A01G145200 chr1A 98.790 248 3 0 2399 2646 505992486 505992733 2.420000e-120 442
12 TraesCS4A01G145200 chr1A 98.790 248 3 0 2399 2646 508975181 508974934 2.420000e-120 442
13 TraesCS4A01G145200 chr5A 98.212 2405 43 0 1 2405 492862433 492860029 0.000000e+00 4204
14 TraesCS4A01G145200 chr5A 99.194 248 2 0 2399 2646 417647602 417647355 5.200000e-122 448
15 TraesCS4A01G145200 chr5A 99.194 248 2 0 2399 2646 692023462 692023709 5.200000e-122 448
16 TraesCS4A01G145200 chr3A 97.922 2406 50 0 1 2406 725803458 725801053 0.000000e+00 4167
17 TraesCS4A01G145200 chr3A 99.194 248 2 0 2399 2646 193273123 193273370 5.200000e-122 448
18 TraesCS4A01G145200 chr4B 97.838 2405 50 2 1 2405 209306366 209303964 0.000000e+00 4152


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G145200 chr4A 246678666 246681311 2645 True 4887 4887 100.000 1 2646 1 chr4A.!!$R2 2645
1 TraesCS4A01G145200 chr4A 67601268 67603672 2404 True 4154 4154 97.839 1 2405 1 chr4A.!!$R1 2404
2 TraesCS4A01G145200 chr7B 742993747 742996151 2404 True 4253 4253 98.586 1 2405 1 chr7B.!!$R1 2404
3 TraesCS4A01G145200 chr7B 716872076 716874477 2401 False 4220 4220 98.377 1 2403 1 chr7B.!!$F1 2402
4 TraesCS4A01G145200 chrUn 186201715 186204119 2404 False 4248 4248 98.545 1 2405 1 chrUn.!!$F1 2404
5 TraesCS4A01G145200 chr7A 60283597 60286001 2404 True 4237 4237 98.462 1 2405 1 chr7A.!!$R1 2404
6 TraesCS4A01G145200 chr1A 498684525 498686926 2401 False 4222 4222 98.378 1 2405 1 chr1A.!!$F3 2404
7 TraesCS4A01G145200 chr5A 492860029 492862433 2404 True 4204 4204 98.212 1 2405 1 chr5A.!!$R2 2404
8 TraesCS4A01G145200 chr3A 725801053 725803458 2405 True 4167 4167 97.922 1 2406 1 chr3A.!!$R1 2405
9 TraesCS4A01G145200 chr4B 209303964 209306366 2402 True 4152 4152 97.838 1 2405 1 chr4B.!!$R1 2404

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
339 340 0.872388 ACCGCTTTGCTACTTTTCGG 59.128 50.0 0.0 0.0 40.98 4.3 F
1052 1054 1.140312 TGGAGCACTCTTTTCCACCT 58.860 50.0 0.0 0.0 36.13 4.0 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1283 1288 2.038952 AGTGAGTTGCTGTCAATGGCTA 59.961 45.455 0.0 0.0 34.29 3.93 R
2555 2560 0.033504 ACTTGATTGACGTGGCGAGT 59.966 50.000 0.0 0.0 0.00 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
126 127 5.234466 AGGCTATGTCTCAGTCAAAGTTT 57.766 39.130 0.00 0.00 0.00 2.66
141 142 4.080638 TCAAAGTTTGACAAGGGGCAAAAT 60.081 37.500 14.35 0.00 35.95 1.82
339 340 0.872388 ACCGCTTTGCTACTTTTCGG 59.128 50.000 0.00 0.00 40.98 4.30
364 365 4.345257 AGAGGAAGAGAAGTTGCTTGTACA 59.655 41.667 0.00 0.00 0.00 2.90
666 668 1.761198 AGAGGGAGTTACGCCCATAAC 59.239 52.381 25.31 13.24 46.18 1.89
668 670 1.485066 AGGGAGTTACGCCCATAACAG 59.515 52.381 25.31 0.00 46.18 3.16
1052 1054 1.140312 TGGAGCACTCTTTTCCACCT 58.860 50.000 0.00 0.00 36.13 4.00
1433 1438 4.943093 GCAATTCAAACCTAATGGCCAAAT 59.057 37.500 10.96 4.19 36.63 2.32
1533 1538 5.538433 GCCTCTCTGATCTACTATCCAACTT 59.462 44.000 0.00 0.00 0.00 2.66
1784 1789 5.764686 TCGGGTTAGTTCACGCTAGATTATA 59.235 40.000 0.00 0.00 33.94 0.98
1821 1826 6.934645 CACCTGTTAGAACACATTAGGAAAGA 59.065 38.462 0.00 0.00 34.70 2.52
1965 1970 2.054799 GGCATAACCAGTATCTCCCCA 58.945 52.381 0.00 0.00 38.86 4.96
2122 2127 0.327924 TGGCCATCGGATTGTTCAGT 59.672 50.000 0.00 0.00 0.00 3.41
2220 2225 4.529731 GGGATGGGCTTGCCCTCC 62.530 72.222 28.37 27.43 38.85 4.30
2297 2302 1.794116 CATGCAAACCAAAGGAAAGCG 59.206 47.619 0.00 0.00 0.00 4.68
2406 2411 0.880278 CACCTCACTGGACCAACGTG 60.880 60.000 7.41 7.41 39.71 4.49
2407 2412 1.335132 ACCTCACTGGACCAACGTGT 61.335 55.000 12.29 0.00 39.71 4.49
2408 2413 0.677288 CCTCACTGGACCAACGTGTA 59.323 55.000 12.29 1.51 38.35 2.90
2409 2414 1.069513 CCTCACTGGACCAACGTGTAA 59.930 52.381 12.29 0.00 38.35 2.41
2410 2415 2.132762 CTCACTGGACCAACGTGTAAC 58.867 52.381 12.29 0.00 0.00 2.50
2411 2416 1.481363 TCACTGGACCAACGTGTAACA 59.519 47.619 12.29 0.00 35.74 2.41
2412 2417 1.595794 CACTGGACCAACGTGTAACAC 59.404 52.381 5.83 0.00 35.74 3.32
2413 2418 1.223187 CTGGACCAACGTGTAACACC 58.777 55.000 0.00 0.00 35.74 4.16
2414 2419 0.179051 TGGACCAACGTGTAACACCC 60.179 55.000 0.00 0.00 35.74 4.61
2415 2420 0.107268 GGACCAACGTGTAACACCCT 59.893 55.000 0.00 0.00 35.74 4.34
2416 2421 1.505425 GACCAACGTGTAACACCCTC 58.495 55.000 0.00 0.00 35.74 4.30
2417 2422 0.249573 ACCAACGTGTAACACCCTCG 60.250 55.000 0.00 0.00 35.74 4.63
2418 2423 0.032403 CCAACGTGTAACACCCTCGA 59.968 55.000 0.00 0.00 35.74 4.04
2419 2424 1.337447 CCAACGTGTAACACCCTCGAT 60.337 52.381 0.00 0.00 35.74 3.59
2420 2425 1.724623 CAACGTGTAACACCCTCGATG 59.275 52.381 0.00 0.00 35.74 3.84
2421 2426 0.389426 ACGTGTAACACCCTCGATGC 60.389 55.000 0.00 0.00 35.74 3.91
2422 2427 1.410737 CGTGTAACACCCTCGATGCG 61.411 60.000 0.00 0.00 35.74 4.73
2423 2428 0.108992 GTGTAACACCCTCGATGCGA 60.109 55.000 0.00 0.00 36.32 5.10
2424 2429 0.108992 TGTAACACCCTCGATGCGAC 60.109 55.000 0.00 0.00 0.00 5.19
2425 2430 0.172803 GTAACACCCTCGATGCGACT 59.827 55.000 0.00 0.00 0.00 4.18
2426 2431 1.402968 GTAACACCCTCGATGCGACTA 59.597 52.381 0.00 0.00 0.00 2.59
2427 2432 1.112113 AACACCCTCGATGCGACTAT 58.888 50.000 0.00 0.00 0.00 2.12
2428 2433 1.977056 ACACCCTCGATGCGACTATA 58.023 50.000 0.00 0.00 0.00 1.31
2429 2434 1.880675 ACACCCTCGATGCGACTATAG 59.119 52.381 0.00 0.00 0.00 1.31
2430 2435 0.882474 ACCCTCGATGCGACTATAGC 59.118 55.000 0.00 0.00 0.00 2.97
2431 2436 1.169577 CCCTCGATGCGACTATAGCT 58.830 55.000 0.00 0.00 35.28 3.32
2432 2437 1.131504 CCCTCGATGCGACTATAGCTC 59.868 57.143 0.00 0.00 35.28 4.09
2433 2438 1.131504 CCTCGATGCGACTATAGCTCC 59.868 57.143 0.00 0.00 35.28 4.70
2434 2439 1.131504 CTCGATGCGACTATAGCTCCC 59.868 57.143 0.00 0.00 35.28 4.30
2435 2440 0.881796 CGATGCGACTATAGCTCCCA 59.118 55.000 0.00 0.00 35.28 4.37
2436 2441 1.401670 CGATGCGACTATAGCTCCCAC 60.402 57.143 0.00 0.00 35.28 4.61
2437 2442 0.598562 ATGCGACTATAGCTCCCACG 59.401 55.000 0.00 0.00 35.28 4.94
2438 2443 0.750546 TGCGACTATAGCTCCCACGT 60.751 55.000 0.00 0.00 35.28 4.49
2439 2444 0.317938 GCGACTATAGCTCCCACGTG 60.318 60.000 9.08 9.08 0.00 4.49
2440 2445 1.022735 CGACTATAGCTCCCACGTGT 58.977 55.000 15.65 0.00 0.00 4.49
2441 2446 1.002684 CGACTATAGCTCCCACGTGTC 60.003 57.143 15.65 0.00 0.00 3.67
2442 2447 1.002684 GACTATAGCTCCCACGTGTCG 60.003 57.143 15.65 4.04 0.00 4.35
2443 2448 1.306148 CTATAGCTCCCACGTGTCGA 58.694 55.000 15.65 8.55 0.00 4.20
2444 2449 1.264557 CTATAGCTCCCACGTGTCGAG 59.735 57.143 20.16 20.16 0.00 4.04
2445 2450 1.384989 ATAGCTCCCACGTGTCGAGG 61.385 60.000 23.66 14.89 37.35 4.63
2447 2452 3.680786 CTCCCACGTGTCGAGGCA 61.681 66.667 15.65 0.00 36.35 4.75
2448 2453 3.916392 CTCCCACGTGTCGAGGCAC 62.916 68.421 15.65 0.00 36.35 5.01
2458 2463 3.545724 TCGAGGCACGACTTAGAGA 57.454 52.632 2.07 0.00 46.45 3.10
2459 2464 1.085091 TCGAGGCACGACTTAGAGAC 58.915 55.000 2.07 0.00 46.45 3.36
2460 2465 0.803117 CGAGGCACGACTTAGAGACA 59.197 55.000 0.00 0.00 45.77 3.41
2461 2466 1.402259 CGAGGCACGACTTAGAGACAT 59.598 52.381 0.00 0.00 45.77 3.06
2462 2467 2.612672 CGAGGCACGACTTAGAGACATA 59.387 50.000 0.00 0.00 45.77 2.29
2463 2468 3.064958 CGAGGCACGACTTAGAGACATAA 59.935 47.826 0.00 0.00 45.77 1.90
2464 2469 4.261238 CGAGGCACGACTTAGAGACATAAT 60.261 45.833 0.00 0.00 45.77 1.28
2465 2470 5.189659 AGGCACGACTTAGAGACATAATC 57.810 43.478 0.00 0.00 0.00 1.75
2466 2471 3.975670 GGCACGACTTAGAGACATAATCG 59.024 47.826 0.00 0.00 0.00 3.34
2467 2472 3.422546 GCACGACTTAGAGACATAATCGC 59.577 47.826 0.00 0.00 0.00 4.58
2468 2473 4.598062 CACGACTTAGAGACATAATCGCA 58.402 43.478 0.00 0.00 0.00 5.10
2469 2474 5.215903 CACGACTTAGAGACATAATCGCAT 58.784 41.667 0.00 0.00 0.00 4.73
2470 2475 5.687730 CACGACTTAGAGACATAATCGCATT 59.312 40.000 0.00 0.00 0.00 3.56
2471 2476 5.687730 ACGACTTAGAGACATAATCGCATTG 59.312 40.000 0.00 0.00 0.00 2.82
2472 2477 5.915196 CGACTTAGAGACATAATCGCATTGA 59.085 40.000 0.00 0.00 0.00 2.57
2473 2478 6.417930 CGACTTAGAGACATAATCGCATTGAA 59.582 38.462 0.00 0.00 0.00 2.69
2474 2479 7.357941 CGACTTAGAGACATAATCGCATTGAAG 60.358 40.741 0.00 0.00 0.00 3.02
2475 2480 6.703607 ACTTAGAGACATAATCGCATTGAAGG 59.296 38.462 0.00 0.00 0.00 3.46
2476 2481 3.812053 AGAGACATAATCGCATTGAAGGC 59.188 43.478 0.00 0.00 0.00 4.35
2477 2482 3.544684 AGACATAATCGCATTGAAGGCA 58.455 40.909 1.88 0.00 0.00 4.75
2478 2483 4.139786 AGACATAATCGCATTGAAGGCAT 58.860 39.130 1.88 0.00 0.00 4.40
2479 2484 5.308014 AGACATAATCGCATTGAAGGCATA 58.692 37.500 1.88 0.00 0.00 3.14
2480 2485 5.942236 AGACATAATCGCATTGAAGGCATAT 59.058 36.000 1.88 0.00 0.00 1.78
2481 2486 5.946298 ACATAATCGCATTGAAGGCATATG 58.054 37.500 13.81 13.81 32.63 1.78
2482 2487 5.474532 ACATAATCGCATTGAAGGCATATGT 59.525 36.000 14.73 14.73 33.81 2.29
2483 2488 4.494350 AATCGCATTGAAGGCATATGTC 57.506 40.909 1.88 0.00 0.00 3.06
2484 2489 2.916640 TCGCATTGAAGGCATATGTCA 58.083 42.857 10.50 0.00 0.00 3.58
2485 2490 2.613595 TCGCATTGAAGGCATATGTCAC 59.386 45.455 10.50 3.91 0.00 3.67
2486 2491 2.355444 CGCATTGAAGGCATATGTCACA 59.645 45.455 10.50 6.60 0.00 3.58
2487 2492 3.181498 CGCATTGAAGGCATATGTCACAA 60.181 43.478 17.52 17.52 0.00 3.33
2488 2493 4.357142 GCATTGAAGGCATATGTCACAAG 58.643 43.478 19.11 14.00 0.00 3.16
2489 2494 4.142315 GCATTGAAGGCATATGTCACAAGT 60.142 41.667 19.11 9.47 0.00 3.16
2490 2495 5.622914 GCATTGAAGGCATATGTCACAAGTT 60.623 40.000 19.11 3.02 0.00 2.66
2491 2496 6.404623 GCATTGAAGGCATATGTCACAAGTTA 60.405 38.462 19.11 3.73 0.00 2.24
2492 2497 6.741992 TTGAAGGCATATGTCACAAGTTAG 57.258 37.500 10.50 0.00 0.00 2.34
2493 2498 5.185454 TGAAGGCATATGTCACAAGTTAGG 58.815 41.667 10.50 0.00 0.00 2.69
2494 2499 3.545703 AGGCATATGTCACAAGTTAGGC 58.454 45.455 10.50 0.00 0.00 3.93
2495 2500 3.054434 AGGCATATGTCACAAGTTAGGCA 60.054 43.478 10.50 0.00 0.00 4.75
2496 2501 3.694072 GGCATATGTCACAAGTTAGGCAA 59.306 43.478 1.45 0.00 0.00 4.52
2497 2502 4.339247 GGCATATGTCACAAGTTAGGCAAT 59.661 41.667 1.45 0.00 0.00 3.56
2498 2503 5.506317 GGCATATGTCACAAGTTAGGCAATC 60.506 44.000 1.45 0.00 0.00 2.67
2499 2504 5.297776 GCATATGTCACAAGTTAGGCAATCT 59.702 40.000 4.29 0.00 0.00 2.40
2500 2505 6.183360 GCATATGTCACAAGTTAGGCAATCTT 60.183 38.462 4.29 0.00 0.00 2.40
2501 2506 5.886960 ATGTCACAAGTTAGGCAATCTTC 57.113 39.130 0.00 0.00 0.00 2.87
2502 2507 4.713553 TGTCACAAGTTAGGCAATCTTCA 58.286 39.130 0.00 0.00 0.00 3.02
2503 2508 4.515191 TGTCACAAGTTAGGCAATCTTCAC 59.485 41.667 0.00 0.00 0.00 3.18
2504 2509 4.515191 GTCACAAGTTAGGCAATCTTCACA 59.485 41.667 0.00 0.00 0.00 3.58
2505 2510 5.008613 GTCACAAGTTAGGCAATCTTCACAA 59.991 40.000 0.00 0.00 0.00 3.33
2506 2511 5.008613 TCACAAGTTAGGCAATCTTCACAAC 59.991 40.000 0.00 0.00 0.00 3.32
2507 2512 4.887071 ACAAGTTAGGCAATCTTCACAACA 59.113 37.500 0.00 0.00 0.00 3.33
2508 2513 5.536161 ACAAGTTAGGCAATCTTCACAACAT 59.464 36.000 0.00 0.00 0.00 2.71
2509 2514 5.886960 AGTTAGGCAATCTTCACAACATC 57.113 39.130 0.00 0.00 0.00 3.06
2510 2515 4.702131 AGTTAGGCAATCTTCACAACATCC 59.298 41.667 0.00 0.00 0.00 3.51
2511 2516 2.450476 AGGCAATCTTCACAACATCCC 58.550 47.619 0.00 0.00 0.00 3.85
2512 2517 2.170166 GGCAATCTTCACAACATCCCA 58.830 47.619 0.00 0.00 0.00 4.37
2513 2518 2.762327 GGCAATCTTCACAACATCCCAT 59.238 45.455 0.00 0.00 0.00 4.00
2514 2519 3.429822 GGCAATCTTCACAACATCCCATG 60.430 47.826 0.00 0.00 0.00 3.66
2516 2521 4.398988 GCAATCTTCACAACATCCCATGTA 59.601 41.667 0.00 0.00 44.07 2.29
2517 2522 5.105797 GCAATCTTCACAACATCCCATGTAA 60.106 40.000 0.00 0.00 44.07 2.41
2518 2523 6.406177 GCAATCTTCACAACATCCCATGTAAT 60.406 38.462 0.00 0.00 44.07 1.89
2519 2524 7.201812 GCAATCTTCACAACATCCCATGTAATA 60.202 37.037 0.00 0.00 44.07 0.98
2520 2525 8.853126 CAATCTTCACAACATCCCATGTAATAT 58.147 33.333 0.00 0.00 44.07 1.28
2523 2528 9.913310 TCTTCACAACATCCCATGTAATATAAA 57.087 29.630 0.00 0.00 44.07 1.40
2550 2555 4.439253 AAGGGGAGATAACATAGTTGGC 57.561 45.455 0.00 0.00 0.00 4.52
2551 2556 3.669949 AGGGGAGATAACATAGTTGGCT 58.330 45.455 0.00 0.00 0.00 4.75
2552 2557 4.047883 AGGGGAGATAACATAGTTGGCTT 58.952 43.478 0.00 0.00 0.00 4.35
2553 2558 5.224441 AGGGGAGATAACATAGTTGGCTTA 58.776 41.667 0.00 0.00 0.00 3.09
2554 2559 5.071923 AGGGGAGATAACATAGTTGGCTTAC 59.928 44.000 0.00 0.00 0.00 2.34
2555 2560 5.163237 GGGGAGATAACATAGTTGGCTTACA 60.163 44.000 0.00 0.00 0.00 2.41
2556 2561 5.758784 GGGAGATAACATAGTTGGCTTACAC 59.241 44.000 0.00 0.00 0.00 2.90
2557 2562 6.408206 GGGAGATAACATAGTTGGCTTACACT 60.408 42.308 0.00 0.00 0.00 3.55
2558 2563 6.702282 GGAGATAACATAGTTGGCTTACACTC 59.298 42.308 0.00 0.00 0.00 3.51
2559 2564 6.273825 AGATAACATAGTTGGCTTACACTCG 58.726 40.000 0.00 0.00 0.00 4.18
2560 2565 2.618053 ACATAGTTGGCTTACACTCGC 58.382 47.619 0.00 0.00 0.00 5.03
2561 2566 1.933853 CATAGTTGGCTTACACTCGCC 59.066 52.381 0.00 0.00 46.46 5.54
2565 2570 2.048503 GGCTTACACTCGCCACGT 60.049 61.111 0.00 0.00 45.59 4.49
2566 2571 2.092882 GGCTTACACTCGCCACGTC 61.093 63.158 0.00 0.00 45.59 4.34
2567 2572 1.372499 GCTTACACTCGCCACGTCA 60.372 57.895 0.00 0.00 0.00 4.35
2568 2573 0.942410 GCTTACACTCGCCACGTCAA 60.942 55.000 0.00 0.00 0.00 3.18
2569 2574 1.710013 CTTACACTCGCCACGTCAAT 58.290 50.000 0.00 0.00 0.00 2.57
2570 2575 1.654105 CTTACACTCGCCACGTCAATC 59.346 52.381 0.00 0.00 0.00 2.67
2571 2576 0.599060 TACACTCGCCACGTCAATCA 59.401 50.000 0.00 0.00 0.00 2.57
2572 2577 0.249699 ACACTCGCCACGTCAATCAA 60.250 50.000 0.00 0.00 0.00 2.57
2573 2578 0.439985 CACTCGCCACGTCAATCAAG 59.560 55.000 0.00 0.00 0.00 3.02
2574 2579 0.033504 ACTCGCCACGTCAATCAAGT 59.966 50.000 0.00 0.00 0.00 3.16
2575 2580 1.271379 ACTCGCCACGTCAATCAAGTA 59.729 47.619 0.00 0.00 0.00 2.24
2576 2581 1.654105 CTCGCCACGTCAATCAAGTAC 59.346 52.381 0.00 0.00 0.00 2.73
2577 2582 1.000052 TCGCCACGTCAATCAAGTACA 60.000 47.619 0.00 0.00 0.00 2.90
2578 2583 1.999735 CGCCACGTCAATCAAGTACAT 59.000 47.619 0.00 0.00 0.00 2.29
2579 2584 3.119424 TCGCCACGTCAATCAAGTACATA 60.119 43.478 0.00 0.00 0.00 2.29
2580 2585 3.615056 CGCCACGTCAATCAAGTACATAA 59.385 43.478 0.00 0.00 0.00 1.90
2581 2586 4.092237 CGCCACGTCAATCAAGTACATAAA 59.908 41.667 0.00 0.00 0.00 1.40
2582 2587 5.220586 CGCCACGTCAATCAAGTACATAAAT 60.221 40.000 0.00 0.00 0.00 1.40
2583 2588 6.019398 CGCCACGTCAATCAAGTACATAAATA 60.019 38.462 0.00 0.00 0.00 1.40
2584 2589 7.464844 CGCCACGTCAATCAAGTACATAAATAA 60.465 37.037 0.00 0.00 0.00 1.40
2585 2590 7.638683 GCCACGTCAATCAAGTACATAAATAAC 59.361 37.037 0.00 0.00 0.00 1.89
2586 2591 8.661257 CCACGTCAATCAAGTACATAAATAACA 58.339 33.333 0.00 0.00 0.00 2.41
2606 2611 8.806429 ATAACATTACATCATCCAAACACTCA 57.194 30.769 0.00 0.00 0.00 3.41
2607 2612 7.707624 AACATTACATCATCCAAACACTCAT 57.292 32.000 0.00 0.00 0.00 2.90
2608 2613 7.092137 ACATTACATCATCCAAACACTCATG 57.908 36.000 0.00 0.00 0.00 3.07
2609 2614 6.095860 ACATTACATCATCCAAACACTCATGG 59.904 38.462 0.00 0.00 38.09 3.66
2610 2615 2.756760 ACATCATCCAAACACTCATGGC 59.243 45.455 0.00 0.00 36.62 4.40
2611 2616 1.838112 TCATCCAAACACTCATGGCC 58.162 50.000 0.00 0.00 36.62 5.36
2612 2617 0.819582 CATCCAAACACTCATGGCCC 59.180 55.000 0.00 0.00 36.62 5.80
2613 2618 0.680921 ATCCAAACACTCATGGCCCG 60.681 55.000 0.00 0.00 36.62 6.13
2614 2619 1.303236 CCAAACACTCATGGCCCGA 60.303 57.895 0.00 0.00 0.00 5.14
2615 2620 1.586154 CCAAACACTCATGGCCCGAC 61.586 60.000 0.00 0.00 0.00 4.79
2616 2621 0.606401 CAAACACTCATGGCCCGACT 60.606 55.000 0.00 0.00 0.00 4.18
2617 2622 0.981183 AAACACTCATGGCCCGACTA 59.019 50.000 0.00 0.00 0.00 2.59
2618 2623 0.249398 AACACTCATGGCCCGACTAC 59.751 55.000 0.00 0.00 0.00 2.73
2619 2624 1.226974 CACTCATGGCCCGACTACG 60.227 63.158 0.00 0.00 39.43 3.51
2629 2634 3.481661 CGACTACGGCGCCAAAAT 58.518 55.556 28.98 8.85 35.72 1.82
2630 2635 2.668203 CGACTACGGCGCCAAAATA 58.332 52.632 28.98 11.73 35.72 1.40
2631 2636 1.000884 CGACTACGGCGCCAAAATAA 58.999 50.000 28.98 3.10 35.72 1.40
2632 2637 1.394227 CGACTACGGCGCCAAAATAAA 59.606 47.619 28.98 1.54 35.72 1.40
2633 2638 2.159680 CGACTACGGCGCCAAAATAAAA 60.160 45.455 28.98 0.39 35.72 1.52
2634 2639 3.422655 GACTACGGCGCCAAAATAAAAG 58.577 45.455 28.98 12.82 0.00 2.27
2635 2640 3.075884 ACTACGGCGCCAAAATAAAAGA 58.924 40.909 28.98 0.00 0.00 2.52
2636 2641 2.629639 ACGGCGCCAAAATAAAAGAG 57.370 45.000 28.98 7.69 0.00 2.85
2637 2642 2.156098 ACGGCGCCAAAATAAAAGAGA 58.844 42.857 28.98 0.00 0.00 3.10
2638 2643 2.554893 ACGGCGCCAAAATAAAAGAGAA 59.445 40.909 28.98 0.00 0.00 2.87
2639 2644 2.914838 CGGCGCCAAAATAAAAGAGAAC 59.085 45.455 28.98 0.00 0.00 3.01
2640 2645 3.250744 GGCGCCAAAATAAAAGAGAACC 58.749 45.455 24.80 0.00 0.00 3.62
2641 2646 3.250744 GCGCCAAAATAAAAGAGAACCC 58.749 45.455 0.00 0.00 0.00 4.11
2642 2647 3.305744 GCGCCAAAATAAAAGAGAACCCA 60.306 43.478 0.00 0.00 0.00 4.51
2643 2648 4.797933 GCGCCAAAATAAAAGAGAACCCAA 60.798 41.667 0.00 0.00 0.00 4.12
2644 2649 4.684242 CGCCAAAATAAAAGAGAACCCAAC 59.316 41.667 0.00 0.00 0.00 3.77
2645 2650 5.606505 GCCAAAATAAAAGAGAACCCAACA 58.393 37.500 0.00 0.00 0.00 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
126 127 3.571590 ACAACTATTTTGCCCCTTGTCA 58.428 40.909 0.00 0.00 0.00 3.58
141 142 9.653287 CATGAACTTCTATTAGGACAACAACTA 57.347 33.333 0.00 0.00 0.00 2.24
339 340 4.384940 ACAAGCAACTTCTCTTCCTCTTC 58.615 43.478 0.00 0.00 0.00 2.87
668 670 2.176792 GCGTTTACAGCCAGCAGC 59.823 61.111 0.00 0.00 44.25 5.25
867 869 4.616802 GTGTCAGTTTATGTTGGAATTGCG 59.383 41.667 0.00 0.00 0.00 4.85
1283 1288 2.038952 AGTGAGTTGCTGTCAATGGCTA 59.961 45.455 0.00 0.00 34.29 3.93
1433 1438 9.547753 GCTATAAGTATTTCTGTCTTGGATTCA 57.452 33.333 0.00 0.00 0.00 2.57
1550 1555 3.118112 CAGAATGTGAGCCTAGGGTGAAT 60.118 47.826 20.52 6.01 0.00 2.57
1784 1789 5.546621 TCTAACAGGTGTTACAAGCTTCT 57.453 39.130 0.00 0.00 39.31 2.85
1821 1826 7.308435 CGAACTCCAAATAGAAATCTTTTGCT 58.692 34.615 10.17 0.00 0.00 3.91
1965 1970 3.648545 GGGTATCCATGCCTCTTAGTTCT 59.351 47.826 0.00 0.00 32.64 3.01
2024 2029 4.185286 GCCCGTATTCCCCGCCTT 62.185 66.667 0.00 0.00 0.00 4.35
2122 2127 4.504596 GGGATCCGCATGGGCACA 62.505 66.667 5.45 0.00 41.24 4.57
2220 2225 3.019003 AAGGACCCAGCGTGATCCG 62.019 63.158 0.00 0.00 36.28 4.18
2297 2302 8.741841 GGACTAGGATCTGTAATAGTTGTATCC 58.258 40.741 0.00 0.00 33.17 2.59
2406 2411 0.172803 AGTCGCATCGAGGGTGTTAC 59.827 55.000 0.00 0.00 36.23 2.50
2407 2412 1.753930 TAGTCGCATCGAGGGTGTTA 58.246 50.000 0.00 0.00 36.23 2.41
2408 2413 1.112113 ATAGTCGCATCGAGGGTGTT 58.888 50.000 0.00 0.00 36.23 3.32
2409 2414 1.880675 CTATAGTCGCATCGAGGGTGT 59.119 52.381 0.00 0.00 36.23 4.16
2410 2415 1.401670 GCTATAGTCGCATCGAGGGTG 60.402 57.143 0.00 0.00 36.23 4.61
2411 2416 0.882474 GCTATAGTCGCATCGAGGGT 59.118 55.000 0.00 0.00 36.23 4.34
2412 2417 1.131504 GAGCTATAGTCGCATCGAGGG 59.868 57.143 0.00 0.00 36.23 4.30
2413 2418 1.131504 GGAGCTATAGTCGCATCGAGG 59.868 57.143 0.84 0.00 36.23 4.63
2414 2419 1.131504 GGGAGCTATAGTCGCATCGAG 59.868 57.143 0.84 0.00 36.23 4.04
2415 2420 1.166129 GGGAGCTATAGTCGCATCGA 58.834 55.000 0.84 0.00 0.00 3.59
2416 2421 0.881796 TGGGAGCTATAGTCGCATCG 59.118 55.000 13.98 0.00 32.37 3.84
2417 2422 1.401670 CGTGGGAGCTATAGTCGCATC 60.402 57.143 18.16 13.23 38.90 3.91
2418 2423 0.598562 CGTGGGAGCTATAGTCGCAT 59.401 55.000 18.16 0.00 38.90 4.73
2419 2424 0.750546 ACGTGGGAGCTATAGTCGCA 60.751 55.000 13.98 13.98 34.73 5.10
2420 2425 0.317938 CACGTGGGAGCTATAGTCGC 60.318 60.000 7.95 6.96 0.00 5.19
2421 2426 1.002684 GACACGTGGGAGCTATAGTCG 60.003 57.143 21.57 0.00 0.00 4.18
2422 2427 1.002684 CGACACGTGGGAGCTATAGTC 60.003 57.143 21.57 2.91 0.00 2.59
2423 2428 1.022735 CGACACGTGGGAGCTATAGT 58.977 55.000 21.57 0.00 0.00 2.12
2424 2429 1.264557 CTCGACACGTGGGAGCTATAG 59.735 57.143 21.57 0.00 0.00 1.31
2425 2430 1.306148 CTCGACACGTGGGAGCTATA 58.694 55.000 21.57 0.00 0.00 1.31
2426 2431 1.384989 CCTCGACACGTGGGAGCTAT 61.385 60.000 25.04 3.08 36.95 2.97
2427 2432 2.044555 CCTCGACACGTGGGAGCTA 61.045 63.158 25.04 4.72 36.95 3.32
2428 2433 3.374402 CCTCGACACGTGGGAGCT 61.374 66.667 25.04 4.48 36.95 4.09
2430 2435 3.680786 TGCCTCGACACGTGGGAG 61.681 66.667 24.04 24.04 40.31 4.30
2431 2436 3.986006 GTGCCTCGACACGTGGGA 61.986 66.667 21.57 15.34 40.31 4.37
2440 2445 1.085091 GTCTCTAAGTCGTGCCTCGA 58.915 55.000 0.00 0.00 46.83 4.04
2441 2446 0.803117 TGTCTCTAAGTCGTGCCTCG 59.197 55.000 0.00 0.00 41.41 4.63
2442 2447 4.634184 TTATGTCTCTAAGTCGTGCCTC 57.366 45.455 0.00 0.00 0.00 4.70
2443 2448 4.261238 CGATTATGTCTCTAAGTCGTGCCT 60.261 45.833 0.00 0.00 0.00 4.75
2444 2449 3.975670 CGATTATGTCTCTAAGTCGTGCC 59.024 47.826 0.00 0.00 0.00 5.01
2445 2450 3.422546 GCGATTATGTCTCTAAGTCGTGC 59.577 47.826 0.00 0.00 0.00 5.34
2446 2451 4.598062 TGCGATTATGTCTCTAAGTCGTG 58.402 43.478 0.00 0.00 0.00 4.35
2447 2452 4.895224 TGCGATTATGTCTCTAAGTCGT 57.105 40.909 0.00 0.00 0.00 4.34
2448 2453 5.915196 TCAATGCGATTATGTCTCTAAGTCG 59.085 40.000 0.00 0.00 0.00 4.18
2449 2454 7.095857 CCTTCAATGCGATTATGTCTCTAAGTC 60.096 40.741 0.00 0.00 0.00 3.01
2450 2455 6.703607 CCTTCAATGCGATTATGTCTCTAAGT 59.296 38.462 0.00 0.00 0.00 2.24
2451 2456 6.347240 GCCTTCAATGCGATTATGTCTCTAAG 60.347 42.308 0.00 0.00 0.00 2.18
2452 2457 5.466728 GCCTTCAATGCGATTATGTCTCTAA 59.533 40.000 0.00 0.00 0.00 2.10
2453 2458 4.991056 GCCTTCAATGCGATTATGTCTCTA 59.009 41.667 0.00 0.00 0.00 2.43
2454 2459 3.812053 GCCTTCAATGCGATTATGTCTCT 59.188 43.478 0.00 0.00 0.00 3.10
2455 2460 3.561310 TGCCTTCAATGCGATTATGTCTC 59.439 43.478 0.00 0.00 0.00 3.36
2456 2461 3.544684 TGCCTTCAATGCGATTATGTCT 58.455 40.909 0.00 0.00 0.00 3.41
2457 2462 3.969117 TGCCTTCAATGCGATTATGTC 57.031 42.857 0.00 0.00 0.00 3.06
2458 2463 5.474532 ACATATGCCTTCAATGCGATTATGT 59.525 36.000 1.58 3.46 32.15 2.29
2459 2464 5.946298 ACATATGCCTTCAATGCGATTATG 58.054 37.500 1.58 0.00 0.00 1.90
2460 2465 5.706833 TGACATATGCCTTCAATGCGATTAT 59.293 36.000 1.58 0.00 0.00 1.28
2461 2466 5.049474 GTGACATATGCCTTCAATGCGATTA 60.049 40.000 1.58 0.00 0.00 1.75
2462 2467 3.884693 TGACATATGCCTTCAATGCGATT 59.115 39.130 1.58 0.00 0.00 3.34
2463 2468 3.251729 GTGACATATGCCTTCAATGCGAT 59.748 43.478 1.58 0.00 0.00 4.58
2464 2469 2.613595 GTGACATATGCCTTCAATGCGA 59.386 45.455 1.58 0.00 0.00 5.10
2465 2470 2.355444 TGTGACATATGCCTTCAATGCG 59.645 45.455 1.58 0.00 0.00 4.73
2466 2471 4.142315 ACTTGTGACATATGCCTTCAATGC 60.142 41.667 1.58 0.00 0.00 3.56
2467 2472 5.571784 ACTTGTGACATATGCCTTCAATG 57.428 39.130 1.58 0.00 0.00 2.82
2468 2473 6.319658 CCTAACTTGTGACATATGCCTTCAAT 59.680 38.462 1.58 0.00 0.00 2.57
2469 2474 5.647658 CCTAACTTGTGACATATGCCTTCAA 59.352 40.000 1.58 3.27 0.00 2.69
2470 2475 5.185454 CCTAACTTGTGACATATGCCTTCA 58.815 41.667 1.58 0.00 0.00 3.02
2471 2476 4.035675 GCCTAACTTGTGACATATGCCTTC 59.964 45.833 1.58 0.00 0.00 3.46
2472 2477 3.947834 GCCTAACTTGTGACATATGCCTT 59.052 43.478 1.58 0.00 0.00 4.35
2473 2478 3.054434 TGCCTAACTTGTGACATATGCCT 60.054 43.478 1.58 0.00 0.00 4.75
2474 2479 3.278574 TGCCTAACTTGTGACATATGCC 58.721 45.455 1.58 0.00 0.00 4.40
2475 2480 4.963276 TTGCCTAACTTGTGACATATGC 57.037 40.909 1.58 0.00 0.00 3.14
2476 2481 6.932356 AGATTGCCTAACTTGTGACATATG 57.068 37.500 0.00 0.00 0.00 1.78
2477 2482 7.066284 GTGAAGATTGCCTAACTTGTGACATAT 59.934 37.037 0.00 0.00 0.00 1.78
2478 2483 6.371548 GTGAAGATTGCCTAACTTGTGACATA 59.628 38.462 0.00 0.00 0.00 2.29
2479 2484 5.182001 GTGAAGATTGCCTAACTTGTGACAT 59.818 40.000 0.00 0.00 0.00 3.06
2480 2485 4.515191 GTGAAGATTGCCTAACTTGTGACA 59.485 41.667 0.00 0.00 0.00 3.58
2481 2486 4.515191 TGTGAAGATTGCCTAACTTGTGAC 59.485 41.667 0.00 0.00 0.00 3.67
2482 2487 4.713553 TGTGAAGATTGCCTAACTTGTGA 58.286 39.130 0.00 0.00 0.00 3.58
2483 2488 5.215160 GTTGTGAAGATTGCCTAACTTGTG 58.785 41.667 0.00 0.00 0.00 3.33
2484 2489 4.887071 TGTTGTGAAGATTGCCTAACTTGT 59.113 37.500 0.00 0.00 0.00 3.16
2485 2490 5.437289 TGTTGTGAAGATTGCCTAACTTG 57.563 39.130 0.00 0.00 0.00 3.16
2486 2491 5.183904 GGATGTTGTGAAGATTGCCTAACTT 59.816 40.000 0.00 0.00 0.00 2.66
2487 2492 4.702131 GGATGTTGTGAAGATTGCCTAACT 59.298 41.667 0.00 0.00 0.00 2.24
2488 2493 4.142381 GGGATGTTGTGAAGATTGCCTAAC 60.142 45.833 0.00 0.00 0.00 2.34
2489 2494 4.016444 GGGATGTTGTGAAGATTGCCTAA 58.984 43.478 0.00 0.00 0.00 2.69
2490 2495 3.010027 TGGGATGTTGTGAAGATTGCCTA 59.990 43.478 0.00 0.00 0.00 3.93
2491 2496 2.225091 TGGGATGTTGTGAAGATTGCCT 60.225 45.455 0.00 0.00 0.00 4.75
2492 2497 2.170166 TGGGATGTTGTGAAGATTGCC 58.830 47.619 0.00 0.00 0.00 4.52
2493 2498 3.194116 ACATGGGATGTTGTGAAGATTGC 59.806 43.478 0.00 0.00 41.63 3.56
2494 2499 6.513806 TTACATGGGATGTTGTGAAGATTG 57.486 37.500 0.00 0.00 41.63 2.67
2497 2502 9.913310 TTTATATTACATGGGATGTTGTGAAGA 57.087 29.630 0.00 0.00 41.63 2.87
2524 2529 8.161425 GCCAACTATGTTATCTCCCCTTTATTA 58.839 37.037 0.00 0.00 0.00 0.98
2525 2530 7.004691 GCCAACTATGTTATCTCCCCTTTATT 58.995 38.462 0.00 0.00 0.00 1.40
2526 2531 6.332901 AGCCAACTATGTTATCTCCCCTTTAT 59.667 38.462 0.00 0.00 0.00 1.40
2527 2532 5.670361 AGCCAACTATGTTATCTCCCCTTTA 59.330 40.000 0.00 0.00 0.00 1.85
2528 2533 4.478686 AGCCAACTATGTTATCTCCCCTTT 59.521 41.667 0.00 0.00 0.00 3.11
2529 2534 4.047883 AGCCAACTATGTTATCTCCCCTT 58.952 43.478 0.00 0.00 0.00 3.95
2530 2535 3.669949 AGCCAACTATGTTATCTCCCCT 58.330 45.455 0.00 0.00 0.00 4.79
2531 2536 4.439253 AAGCCAACTATGTTATCTCCCC 57.561 45.455 0.00 0.00 0.00 4.81
2532 2537 5.758784 GTGTAAGCCAACTATGTTATCTCCC 59.241 44.000 0.00 0.00 0.00 4.30
2533 2538 6.583562 AGTGTAAGCCAACTATGTTATCTCC 58.416 40.000 0.00 0.00 0.00 3.71
2534 2539 6.418226 CGAGTGTAAGCCAACTATGTTATCTC 59.582 42.308 0.00 0.00 0.00 2.75
2535 2540 6.273825 CGAGTGTAAGCCAACTATGTTATCT 58.726 40.000 0.00 0.00 0.00 1.98
2536 2541 5.050972 GCGAGTGTAAGCCAACTATGTTATC 60.051 44.000 0.00 0.00 0.00 1.75
2537 2542 4.809426 GCGAGTGTAAGCCAACTATGTTAT 59.191 41.667 0.00 0.00 0.00 1.89
2538 2543 4.178540 GCGAGTGTAAGCCAACTATGTTA 58.821 43.478 0.00 0.00 0.00 2.41
2539 2544 3.000727 GCGAGTGTAAGCCAACTATGTT 58.999 45.455 0.00 0.00 0.00 2.71
2540 2545 2.618053 GCGAGTGTAAGCCAACTATGT 58.382 47.619 0.00 0.00 0.00 2.29
2549 2554 0.942410 TTGACGTGGCGAGTGTAAGC 60.942 55.000 0.00 0.00 0.00 3.09
2550 2555 1.654105 GATTGACGTGGCGAGTGTAAG 59.346 52.381 0.00 0.00 0.00 2.34
2551 2556 1.000052 TGATTGACGTGGCGAGTGTAA 60.000 47.619 0.00 0.00 0.00 2.41
2552 2557 0.599060 TGATTGACGTGGCGAGTGTA 59.401 50.000 0.00 0.00 0.00 2.90
2553 2558 0.249699 TTGATTGACGTGGCGAGTGT 60.250 50.000 0.00 0.00 0.00 3.55
2554 2559 0.439985 CTTGATTGACGTGGCGAGTG 59.560 55.000 0.00 0.00 0.00 3.51
2555 2560 0.033504 ACTTGATTGACGTGGCGAGT 59.966 50.000 0.00 0.00 0.00 4.18
2556 2561 1.654105 GTACTTGATTGACGTGGCGAG 59.346 52.381 0.00 0.00 0.00 5.03
2557 2562 1.000052 TGTACTTGATTGACGTGGCGA 60.000 47.619 0.00 0.00 0.00 5.54
2558 2563 1.424403 TGTACTTGATTGACGTGGCG 58.576 50.000 0.00 0.00 0.00 5.69
2559 2564 5.539582 TTTATGTACTTGATTGACGTGGC 57.460 39.130 0.00 0.00 0.00 5.01
2560 2565 8.661257 TGTTATTTATGTACTTGATTGACGTGG 58.339 33.333 0.00 0.00 0.00 4.94
2580 2585 9.241919 TGAGTGTTTGGATGATGTAATGTTATT 57.758 29.630 0.00 0.00 0.00 1.40
2581 2586 8.806429 TGAGTGTTTGGATGATGTAATGTTAT 57.194 30.769 0.00 0.00 0.00 1.89
2582 2587 8.676401 CATGAGTGTTTGGATGATGTAATGTTA 58.324 33.333 0.00 0.00 0.00 2.41
2583 2588 7.363181 CCATGAGTGTTTGGATGATGTAATGTT 60.363 37.037 0.00 0.00 34.81 2.71
2584 2589 6.095860 CCATGAGTGTTTGGATGATGTAATGT 59.904 38.462 0.00 0.00 34.81 2.71
2585 2590 6.500910 CCATGAGTGTTTGGATGATGTAATG 58.499 40.000 0.00 0.00 34.81 1.90
2586 2591 5.068198 GCCATGAGTGTTTGGATGATGTAAT 59.932 40.000 0.00 0.00 34.81 1.89
2587 2592 4.398988 GCCATGAGTGTTTGGATGATGTAA 59.601 41.667 0.00 0.00 34.81 2.41
2588 2593 3.947196 GCCATGAGTGTTTGGATGATGTA 59.053 43.478 0.00 0.00 34.81 2.29
2589 2594 2.756760 GCCATGAGTGTTTGGATGATGT 59.243 45.455 0.00 0.00 34.81 3.06
2590 2595 2.100252 GGCCATGAGTGTTTGGATGATG 59.900 50.000 0.00 0.00 34.81 3.07
2591 2596 2.381911 GGCCATGAGTGTTTGGATGAT 58.618 47.619 0.00 0.00 34.81 2.45
2592 2597 1.616725 GGGCCATGAGTGTTTGGATGA 60.617 52.381 4.39 0.00 34.81 2.92
2593 2598 0.819582 GGGCCATGAGTGTTTGGATG 59.180 55.000 4.39 0.00 34.81 3.51
2594 2599 0.680921 CGGGCCATGAGTGTTTGGAT 60.681 55.000 4.39 0.00 34.81 3.41
2595 2600 1.303236 CGGGCCATGAGTGTTTGGA 60.303 57.895 4.39 0.00 34.81 3.53
2596 2601 1.303236 TCGGGCCATGAGTGTTTGG 60.303 57.895 4.39 0.00 36.03 3.28
2597 2602 0.606401 AGTCGGGCCATGAGTGTTTG 60.606 55.000 4.39 0.00 0.00 2.93
2598 2603 0.981183 TAGTCGGGCCATGAGTGTTT 59.019 50.000 4.39 0.00 0.00 2.83
2599 2604 0.249398 GTAGTCGGGCCATGAGTGTT 59.751 55.000 4.39 0.00 0.00 3.32
2600 2605 1.898154 GTAGTCGGGCCATGAGTGT 59.102 57.895 4.39 0.00 0.00 3.55
2601 2606 1.226974 CGTAGTCGGGCCATGAGTG 60.227 63.158 4.39 0.00 0.00 3.51
2602 2607 3.207354 CGTAGTCGGGCCATGAGT 58.793 61.111 4.39 7.49 0.00 3.41
2612 2617 1.000884 TTATTTTGGCGCCGTAGTCG 58.999 50.000 23.90 0.00 0.00 4.18
2613 2618 3.125658 TCTTTTATTTTGGCGCCGTAGTC 59.874 43.478 23.90 0.00 0.00 2.59
2614 2619 3.075884 TCTTTTATTTTGGCGCCGTAGT 58.924 40.909 23.90 11.39 0.00 2.73
2615 2620 3.372822 TCTCTTTTATTTTGGCGCCGTAG 59.627 43.478 23.90 9.50 0.00 3.51
2616 2621 3.336468 TCTCTTTTATTTTGGCGCCGTA 58.664 40.909 23.90 9.84 0.00 4.02
2617 2622 2.156098 TCTCTTTTATTTTGGCGCCGT 58.844 42.857 23.90 10.36 0.00 5.68
2618 2623 2.911819 TCTCTTTTATTTTGGCGCCG 57.088 45.000 23.90 3.56 0.00 6.46
2619 2624 3.250744 GGTTCTCTTTTATTTTGGCGCC 58.749 45.455 22.73 22.73 0.00 6.53
2620 2625 3.250744 GGGTTCTCTTTTATTTTGGCGC 58.749 45.455 0.00 0.00 0.00 6.53
2621 2626 4.513198 TGGGTTCTCTTTTATTTTGGCG 57.487 40.909 0.00 0.00 0.00 5.69
2622 2627 5.606505 TGTTGGGTTCTCTTTTATTTTGGC 58.393 37.500 0.00 0.00 0.00 4.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.