Multiple sequence alignment - TraesCS4A01G144300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G144300 chr4A 100.000 6675 0 0 1 6675 242664723 242658049 0.000000e+00 12327.0
1 TraesCS4A01G144300 chr7D 96.032 3705 118 18 1327 5019 176342119 176345806 0.000000e+00 6000.0
2 TraesCS4A01G144300 chr7D 88.880 1313 132 11 5 1311 205232730 205231426 0.000000e+00 1604.0
3 TraesCS4A01G144300 chr7D 94.857 350 18 0 6326 6675 205128516 205128865 1.270000e-151 547.0
4 TraesCS4A01G144300 chr1A 95.094 3730 163 11 1295 5014 321560210 321563929 0.000000e+00 5856.0
5 TraesCS4A01G144300 chr1A 91.415 431 28 6 2769 3198 186755865 186755443 3.470000e-162 582.0
6 TraesCS4A01G144300 chr1A 87.227 321 38 3 2428 2747 387664181 387663863 4.920000e-96 363.0
7 TraesCS4A01G144300 chr1A 91.304 207 18 0 3360 3566 345995384 345995590 3.940000e-72 283.0
8 TraesCS4A01G144300 chr2D 96.634 3446 104 8 1583 5019 321098630 321102072 0.000000e+00 5710.0
9 TraesCS4A01G144300 chr2A 94.943 3421 155 13 1605 5014 388025170 388028583 0.000000e+00 5343.0
10 TraesCS4A01G144300 chr2A 92.949 780 50 5 5023 5801 417617792 417617017 0.000000e+00 1131.0
11 TraesCS4A01G144300 chr2A 93.872 359 21 1 6317 6675 34934312 34934669 2.120000e-149 540.0
12 TraesCS4A01G144300 chr2A 86.762 491 52 10 1295 1779 388024899 388025382 9.850000e-148 534.0
13 TraesCS4A01G144300 chr2A 86.591 440 31 9 5954 6391 99773867 99773454 1.700000e-125 460.0
14 TraesCS4A01G144300 chr2A 92.271 207 16 0 3360 3566 466883295 466883501 1.820000e-75 294.0
15 TraesCS4A01G144300 chr6B 94.102 2594 135 10 1711 4296 312252290 312254873 0.000000e+00 3927.0
16 TraesCS4A01G144300 chr6B 87.667 1200 134 11 5 1193 420706685 420707881 0.000000e+00 1384.0
17 TraesCS4A01G144300 chr6B 87.383 1173 136 7 5 1167 457388652 457387482 0.000000e+00 1336.0
18 TraesCS4A01G144300 chr6B 91.421 781 62 5 5023 5801 18345070 18345847 0.000000e+00 1066.0
19 TraesCS4A01G144300 chr6B 90.141 568 53 3 2199 2764 575444791 575445357 0.000000e+00 736.0
20 TraesCS4A01G144300 chr4B 94.488 1905 93 7 3124 5019 47136940 47135039 0.000000e+00 2926.0
21 TraesCS4A01G144300 chr4B 84.171 796 113 11 529 1317 285746347 285745558 0.000000e+00 760.0
22 TraesCS4A01G144300 chr1B 93.208 1281 66 16 5023 6299 672178693 672177430 0.000000e+00 1864.0
23 TraesCS4A01G144300 chr1B 87.986 1465 129 23 1307 2764 502358282 502359706 0.000000e+00 1687.0
24 TraesCS4A01G144300 chr1B 87.737 1321 146 10 11 1318 201728978 201730295 0.000000e+00 1528.0
25 TraesCS4A01G144300 chr1B 91.521 802 56 7 1965 2764 272047418 272048209 0.000000e+00 1094.0
26 TraesCS4A01G144300 chr1B 93.913 460 25 3 5649 6105 672177926 672177467 0.000000e+00 691.0
27 TraesCS4A01G144300 chr1B 93.261 460 27 4 5802 6258 672178078 672177620 0.000000e+00 675.0
28 TraesCS4A01G144300 chr1B 82.917 720 95 16 566 1272 313917049 313917753 2.040000e-174 623.0
29 TraesCS4A01G144300 chr1B 84.258 667 70 14 1294 1955 272043130 272043766 9.510000e-173 617.0
30 TraesCS4A01G144300 chr1B 94.413 358 18 2 6318 6675 100163173 100163528 3.520000e-152 549.0
31 TraesCS4A01G144300 chr1B 89.062 64 7 0 3301 3364 10260743 10260680 5.550000e-11 80.5
32 TraesCS4A01G144300 chr3B 92.302 1286 85 13 5023 6299 724388234 724386954 0.000000e+00 1814.0
33 TraesCS4A01G144300 chr3B 87.424 1320 156 7 5 1317 440489102 440490418 0.000000e+00 1509.0
34 TraesCS4A01G144300 chr3B 92.692 780 55 2 5023 5801 353582669 353581891 0.000000e+00 1123.0
35 TraesCS4A01G144300 chr3B 91.795 780 60 4 5023 5801 551466391 551465615 0.000000e+00 1083.0
36 TraesCS4A01G144300 chr3B 91.538 780 62 3 5023 5801 450149236 450148460 0.000000e+00 1072.0
37 TraesCS4A01G144300 chr3B 88.955 507 24 4 3576 4082 456613094 456612620 1.240000e-166 597.0
38 TraesCS4A01G144300 chr3B 90.164 61 6 0 3298 3358 151852772 151852832 5.550000e-11 80.5
39 TraesCS4A01G144300 chr5B 91.583 1295 87 20 5023 6299 194917514 194916224 0.000000e+00 1768.0
40 TraesCS4A01G144300 chr5B 92.267 944 59 7 4089 5019 429932322 429931380 0.000000e+00 1327.0
41 TraesCS4A01G144300 chr5B 84.515 1298 165 21 1 1288 473073430 473072159 0.000000e+00 1251.0
42 TraesCS4A01G144300 chr5B 88.671 459 49 2 1 456 473074990 473074532 2.100000e-154 556.0
43 TraesCS4A01G144300 chr5B 94.366 355 18 2 6321 6675 190379780 190379428 1.640000e-150 544.0
44 TraesCS4A01G144300 chr5B 89.344 122 13 0 3233 3354 235760500 235760379 3.220000e-33 154.0
45 TraesCS4A01G144300 chr7B 90.888 1295 91 21 5023 6299 459359028 459360313 0.000000e+00 1712.0
46 TraesCS4A01G144300 chr7B 93.077 780 49 5 5023 5801 278473332 278472557 0.000000e+00 1136.0
47 TraesCS4A01G144300 chr7B 91.991 462 35 2 2124 2583 131526818 131526357 0.000000e+00 647.0
48 TraesCS4A01G144300 chr7B 91.628 430 35 1 2769 3198 162028531 162028103 1.600000e-165 593.0
49 TraesCS4A01G144300 chr7B 85.279 197 26 3 1295 1489 708684285 708684090 4.080000e-47 200.0
50 TraesCS4A01G144300 chr2B 91.101 1281 81 25 5029 6299 367169076 367167819 0.000000e+00 1703.0
51 TraesCS4A01G144300 chr2B 92.190 781 58 3 5023 5801 485993913 485993134 0.000000e+00 1101.0
52 TraesCS4A01G144300 chr2B 86.676 698 64 11 1595 2266 316010318 316009624 0.000000e+00 747.0
53 TraesCS4A01G144300 chr2B 90.465 430 41 0 2769 3198 304261807 304262236 9.710000e-158 568.0
54 TraesCS4A01G144300 chr6D 94.462 939 44 4 4089 5019 10402165 10403103 0.000000e+00 1439.0
55 TraesCS4A01G144300 chr6D 89.099 477 22 2 3600 4076 10400961 10401407 3.490000e-157 566.0
56 TraesCS4A01G144300 chr5D 86.973 1305 133 24 1 1288 392059697 392058413 0.000000e+00 1434.0
57 TraesCS4A01G144300 chr5D 95.429 350 16 0 6326 6675 229934614 229934963 5.850000e-155 558.0
58 TraesCS4A01G144300 chr5D 86.813 182 22 2 1295 1474 433839994 433839813 1.140000e-47 202.0
59 TraesCS4A01G144300 chr5D 86.559 186 19 6 1294 1474 428342525 428342709 4.080000e-47 200.0
60 TraesCS4A01G144300 chr5A 93.730 941 46 7 4089 5019 80931917 80932854 0.000000e+00 1399.0
61 TraesCS4A01G144300 chr5A 93.860 228 14 0 3576 3803 80929890 80930117 1.780000e-90 344.0
62 TraesCS4A01G144300 chr6A 93.518 941 51 5 4089 5019 11894685 11895625 0.000000e+00 1391.0
63 TraesCS4A01G144300 chr6A 95.510 735 29 4 5225 5956 136215232 136214499 0.000000e+00 1171.0
64 TraesCS4A01G144300 chr6A 94.337 724 35 6 5955 6675 136214806 136214086 0.000000e+00 1105.0
65 TraesCS4A01G144300 chr6A 88.166 507 30 2 3576 4082 11893480 11893956 1.610000e-160 577.0
66 TraesCS4A01G144300 chr6A 96.286 350 12 1 6326 6675 370484086 370484434 2.090000e-159 573.0
67 TraesCS4A01G144300 chr6A 93.304 224 15 0 6165 6388 279830802 279831025 1.390000e-86 331.0
68 TraesCS4A01G144300 chr6A 86.387 191 22 4 1295 1483 213671056 213670868 8.770000e-49 206.0
69 TraesCS4A01G144300 chr6A 86.170 188 22 4 1295 1480 71145979 71146164 4.080000e-47 200.0
70 TraesCS4A01G144300 chr4D 92.559 766 51 4 5038 5801 258922727 258923488 0.000000e+00 1094.0
71 TraesCS4A01G144300 chr1D 93.750 528 31 2 5580 6105 104099919 104099392 0.000000e+00 791.0
72 TraesCS4A01G144300 chr1D 94.800 500 24 2 5802 6299 104099850 104099351 0.000000e+00 778.0
73 TraesCS4A01G144300 chr1D 87.525 505 33 8 1415 1903 189346306 189345816 2.100000e-154 556.0
74 TraesCS4A01G144300 chr7A 87.976 499 56 2 26 522 276740987 276740491 2.680000e-163 586.0
75 TraesCS4A01G144300 chr7A 91.787 207 16 1 3360 3566 321644978 321644773 3.050000e-73 287.0
76 TraesCS4A01G144300 chr3D 95.157 351 15 2 6326 6675 293796566 293796915 2.720000e-153 553.0
77 TraesCS4A01G144300 chr3D 95.143 350 17 0 6326 6675 371516164 371515815 2.720000e-153 553.0
78 TraesCS4A01G144300 chrUn 89.425 435 41 3 2769 3198 51027590 51028024 1.640000e-150 544.0
79 TraesCS4A01G144300 chrUn 86.813 182 22 2 1295 1474 111821680 111821861 1.140000e-47 202.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G144300 chr4A 242658049 242664723 6674 True 12327.000000 12327 100.000000 1 6675 1 chr4A.!!$R1 6674
1 TraesCS4A01G144300 chr7D 176342119 176345806 3687 False 6000.000000 6000 96.032000 1327 5019 1 chr7D.!!$F1 3692
2 TraesCS4A01G144300 chr7D 205231426 205232730 1304 True 1604.000000 1604 88.880000 5 1311 1 chr7D.!!$R1 1306
3 TraesCS4A01G144300 chr1A 321560210 321563929 3719 False 5856.000000 5856 95.094000 1295 5014 1 chr1A.!!$F1 3719
4 TraesCS4A01G144300 chr2D 321098630 321102072 3442 False 5710.000000 5710 96.634000 1583 5019 1 chr2D.!!$F1 3436
5 TraesCS4A01G144300 chr2A 388024899 388028583 3684 False 2938.500000 5343 90.852500 1295 5014 2 chr2A.!!$F3 3719
6 TraesCS4A01G144300 chr2A 417617017 417617792 775 True 1131.000000 1131 92.949000 5023 5801 1 chr2A.!!$R2 778
7 TraesCS4A01G144300 chr6B 312252290 312254873 2583 False 3927.000000 3927 94.102000 1711 4296 1 chr6B.!!$F2 2585
8 TraesCS4A01G144300 chr6B 420706685 420707881 1196 False 1384.000000 1384 87.667000 5 1193 1 chr6B.!!$F3 1188
9 TraesCS4A01G144300 chr6B 457387482 457388652 1170 True 1336.000000 1336 87.383000 5 1167 1 chr6B.!!$R1 1162
10 TraesCS4A01G144300 chr6B 18345070 18345847 777 False 1066.000000 1066 91.421000 5023 5801 1 chr6B.!!$F1 778
11 TraesCS4A01G144300 chr6B 575444791 575445357 566 False 736.000000 736 90.141000 2199 2764 1 chr6B.!!$F4 565
12 TraesCS4A01G144300 chr4B 47135039 47136940 1901 True 2926.000000 2926 94.488000 3124 5019 1 chr4B.!!$R1 1895
13 TraesCS4A01G144300 chr4B 285745558 285746347 789 True 760.000000 760 84.171000 529 1317 1 chr4B.!!$R2 788
14 TraesCS4A01G144300 chr1B 502358282 502359706 1424 False 1687.000000 1687 87.986000 1307 2764 1 chr1B.!!$F4 1457
15 TraesCS4A01G144300 chr1B 201728978 201730295 1317 False 1528.000000 1528 87.737000 11 1318 1 chr1B.!!$F2 1307
16 TraesCS4A01G144300 chr1B 672177430 672178693 1263 True 1076.666667 1864 93.460667 5023 6299 3 chr1B.!!$R2 1276
17 TraesCS4A01G144300 chr1B 272043130 272048209 5079 False 855.500000 1094 87.889500 1294 2764 2 chr1B.!!$F5 1470
18 TraesCS4A01G144300 chr1B 313917049 313917753 704 False 623.000000 623 82.917000 566 1272 1 chr1B.!!$F3 706
19 TraesCS4A01G144300 chr3B 724386954 724388234 1280 True 1814.000000 1814 92.302000 5023 6299 1 chr3B.!!$R5 1276
20 TraesCS4A01G144300 chr3B 440489102 440490418 1316 False 1509.000000 1509 87.424000 5 1317 1 chr3B.!!$F2 1312
21 TraesCS4A01G144300 chr3B 353581891 353582669 778 True 1123.000000 1123 92.692000 5023 5801 1 chr3B.!!$R1 778
22 TraesCS4A01G144300 chr3B 551465615 551466391 776 True 1083.000000 1083 91.795000 5023 5801 1 chr3B.!!$R4 778
23 TraesCS4A01G144300 chr3B 450148460 450149236 776 True 1072.000000 1072 91.538000 5023 5801 1 chr3B.!!$R2 778
24 TraesCS4A01G144300 chr5B 194916224 194917514 1290 True 1768.000000 1768 91.583000 5023 6299 1 chr5B.!!$R2 1276
25 TraesCS4A01G144300 chr5B 429931380 429932322 942 True 1327.000000 1327 92.267000 4089 5019 1 chr5B.!!$R4 930
26 TraesCS4A01G144300 chr5B 473072159 473074990 2831 True 903.500000 1251 86.593000 1 1288 2 chr5B.!!$R5 1287
27 TraesCS4A01G144300 chr7B 459359028 459360313 1285 False 1712.000000 1712 90.888000 5023 6299 1 chr7B.!!$F1 1276
28 TraesCS4A01G144300 chr7B 278472557 278473332 775 True 1136.000000 1136 93.077000 5023 5801 1 chr7B.!!$R3 778
29 TraesCS4A01G144300 chr2B 367167819 367169076 1257 True 1703.000000 1703 91.101000 5029 6299 1 chr2B.!!$R2 1270
30 TraesCS4A01G144300 chr2B 485993134 485993913 779 True 1101.000000 1101 92.190000 5023 5801 1 chr2B.!!$R3 778
31 TraesCS4A01G144300 chr2B 316009624 316010318 694 True 747.000000 747 86.676000 1595 2266 1 chr2B.!!$R1 671
32 TraesCS4A01G144300 chr6D 10400961 10403103 2142 False 1002.500000 1439 91.780500 3600 5019 2 chr6D.!!$F1 1419
33 TraesCS4A01G144300 chr5D 392058413 392059697 1284 True 1434.000000 1434 86.973000 1 1288 1 chr5D.!!$R1 1287
34 TraesCS4A01G144300 chr5A 80929890 80932854 2964 False 871.500000 1399 93.795000 3576 5019 2 chr5A.!!$F1 1443
35 TraesCS4A01G144300 chr6A 136214086 136215232 1146 True 1138.000000 1171 94.923500 5225 6675 2 chr6A.!!$R2 1450
36 TraesCS4A01G144300 chr6A 11893480 11895625 2145 False 984.000000 1391 90.842000 3576 5019 2 chr6A.!!$F4 1443
37 TraesCS4A01G144300 chr4D 258922727 258923488 761 False 1094.000000 1094 92.559000 5038 5801 1 chr4D.!!$F1 763
38 TraesCS4A01G144300 chr1D 104099351 104099919 568 True 784.500000 791 94.275000 5580 6299 2 chr1D.!!$R2 719

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
234 1797 0.104356 TCCCTTCCAACTACCCCACA 60.104 55.0 0.00 0.00 0.00 4.17 F
726 2292 0.179073 ATGGTAAGCAGCGCTCGATT 60.179 50.0 7.13 11.31 38.25 3.34 F
1349 2938 0.319083 AAGGGCACGACGAACATACA 59.681 50.0 0.00 0.00 0.00 2.29 F
3128 8437 0.603707 CGGCACCACAGTCTGTTCAT 60.604 55.0 1.67 0.00 0.00 2.57 F
3171 8480 0.025898 CGACGCAACGACGAGATCTA 59.974 55.0 0.00 0.00 46.01 1.98 F
5025 11907 0.027979 CGCCGCAATGTCATAGTTGG 59.972 55.0 0.00 0.00 0.00 3.77 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1708 3348 0.944999 TAGGAGGAGGAAGGAGGCAT 59.055 55.000 0.00 0.0 0.00 4.40 R
2583 7890 1.267806 CGGCACTCTTTGAACTTGCAT 59.732 47.619 0.00 0.0 34.76 3.96 R
3171 8480 0.478589 AAAGAGGAAGGGGGAAGGCT 60.479 55.000 0.00 0.0 0.00 4.58 R
4663 11538 1.527034 ACAGTGAGTACTACCGCGAA 58.473 50.000 8.23 0.0 34.74 4.70 R
5059 11941 1.541588 GCACTGCTCCCAAGGTTTTAG 59.458 52.381 0.00 0.0 0.00 1.85 R
6113 13667 1.421268 ACTCAGGCACAAACATCCTCA 59.579 47.619 0.00 0.0 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 63 9.906660 ATCGCAATTAAACTTGATAAAACTTCA 57.093 25.926 0.00 0.00 0.00 3.02
80 82 4.574674 TCAAATGGAGTTAGCAGTGGAT 57.425 40.909 0.00 0.00 0.00 3.41
81 83 4.264253 TCAAATGGAGTTAGCAGTGGATG 58.736 43.478 0.00 0.00 0.00 3.51
126 130 6.979238 GGAGTTTGCTAGTATCGATACAAACT 59.021 38.462 31.49 31.49 37.92 2.66
149 153 2.042639 GTACGGGACCAGGGCCTA 60.043 66.667 12.69 0.00 0.00 3.93
168 1731 5.480772 GGCCTATATAGTCTGTGTACACCAT 59.519 44.000 22.91 10.55 0.00 3.55
234 1797 0.104356 TCCCTTCCAACTACCCCACA 60.104 55.000 0.00 0.00 0.00 4.17
243 1806 0.991146 ACTACCCCACATGACATGCA 59.009 50.000 15.49 0.00 0.00 3.96
279 1842 5.698104 TCAAGATATTGATGATGCAAGGGT 58.302 37.500 0.00 0.00 0.00 4.34
316 1879 0.828762 AAAATGGCCAGCAGCTCACA 60.829 50.000 13.05 0.00 43.05 3.58
340 1903 4.965814 AGTTCAAGCTCATCAGTTCAAGA 58.034 39.130 0.00 0.00 0.00 3.02
351 1914 6.533730 TCATCAGTTCAAGAAGTATGTGGTT 58.466 36.000 0.00 0.00 0.00 3.67
440 2003 3.238232 CACACATGGTGGAGGACAG 57.762 57.895 0.00 0.00 44.04 3.51
441 2004 0.686789 CACACATGGTGGAGGACAGA 59.313 55.000 0.00 0.00 44.04 3.41
485 2048 2.939640 GCATGGGTTTCCGTACTGATGT 60.940 50.000 0.00 0.00 35.24 3.06
510 2075 1.131126 GCACACATGTACTGATGCACC 59.869 52.381 0.00 0.00 39.09 5.01
511 2076 2.703416 CACACATGTACTGATGCACCT 58.297 47.619 0.00 0.00 0.00 4.00
524 2089 0.396060 TGCACCTGTACTGATGCACA 59.604 50.000 17.15 0.00 42.92 4.57
549 2114 3.036577 GCAGCAGCACACACATGT 58.963 55.556 0.00 0.00 40.80 3.21
573 2138 3.202097 TGAAACAAAGAGTGTCATGCGA 58.798 40.909 0.00 0.00 39.58 5.10
584 2149 1.432514 GTCATGCGACATCACACACT 58.567 50.000 0.00 0.00 42.13 3.55
637 2202 0.744414 GAGCTAGGCAAACATGGCGA 60.744 55.000 0.00 0.00 39.53 5.54
638 2203 0.745845 AGCTAGGCAAACATGGCGAG 60.746 55.000 7.89 7.89 39.40 5.03
677 2243 4.045334 AGAATGGGGAGGATGGTTGTTTTA 59.955 41.667 0.00 0.00 0.00 1.52
694 2260 7.011295 GGTTGTTTTACCGAATATTATGGTCGA 59.989 37.037 13.62 4.00 36.92 4.20
699 2265 9.550406 TTTTACCGAATATTATGGTCGAGATTT 57.450 29.630 13.62 0.00 36.92 2.17
711 2277 4.020573 TGGTCGAGATTTGACTTGTATGGT 60.021 41.667 0.00 0.00 36.58 3.55
726 2292 0.179073 ATGGTAAGCAGCGCTCGATT 60.179 50.000 7.13 11.31 38.25 3.34
748 2314 2.125350 CTGAGAAGCAGGGTCGCC 60.125 66.667 0.00 0.00 41.07 5.54
749 2315 2.922503 TGAGAAGCAGGGTCGCCA 60.923 61.111 0.00 0.00 0.00 5.69
850 2420 1.227823 CGTGGCAGTTCAGGGAACA 60.228 57.895 11.28 0.00 44.11 3.18
856 2426 2.215196 GCAGTTCAGGGAACACGTTTA 58.785 47.619 11.28 0.00 44.11 2.01
948 2519 2.947938 GATGGGGCATGGACCACGAG 62.948 65.000 0.00 0.00 40.05 4.18
1018 2600 0.322098 CATGGCGGTTGTGGAAGGTA 60.322 55.000 0.00 0.00 0.00 3.08
1184 2771 2.043652 CAGCTGTGGGATTGGGGG 60.044 66.667 5.25 0.00 0.00 5.40
1222 2809 4.041762 TTGACCGGGATGTGGGCC 62.042 66.667 6.32 0.00 31.46 5.80
1346 2935 2.223971 CCTATAAGGGCACGACGAACAT 60.224 50.000 0.00 0.00 0.00 2.71
1349 2938 0.319083 AAGGGCACGACGAACATACA 59.681 50.000 0.00 0.00 0.00 2.29
1371 2961 2.701951 ACAGTAGAAACTTCCCGACCAA 59.298 45.455 0.00 0.00 31.97 3.67
1544 3134 3.777522 ACTTCTCCTCATTTTCTCCCGAT 59.222 43.478 0.00 0.00 0.00 4.18
1548 3138 4.125703 CTCCTCATTTTCTCCCGATCAAG 58.874 47.826 0.00 0.00 0.00 3.02
1551 3141 3.535561 TCATTTTCTCCCGATCAAGAGC 58.464 45.455 4.45 0.00 0.00 4.09
1554 3144 2.279784 CTCCCGATCAAGAGCGCC 60.280 66.667 2.29 0.00 39.12 6.53
1556 3146 4.207281 CCCGATCAAGAGCGCCGA 62.207 66.667 2.29 0.00 39.12 5.54
1708 3348 1.463214 TTCCTCCTCTTGGCACCCA 60.463 57.895 0.00 0.00 0.00 4.51
1951 3604 3.322466 CTCGTCCTGGTGGGGCTT 61.322 66.667 0.00 0.00 37.61 4.35
2274 7579 5.912103 AGGTAGAGATTAAATATCCCCCGA 58.088 41.667 0.00 0.00 0.00 5.14
2389 7694 4.182132 CGTGAGCAGCTCCTGAAG 57.818 61.111 20.16 0.00 32.44 3.02
2418 7723 7.994425 TTCCTTAACATTGCTACAATTCTGA 57.006 32.000 0.00 0.00 0.00 3.27
2420 7725 8.579850 TCCTTAACATTGCTACAATTCTGAAT 57.420 30.769 0.00 0.00 0.00 2.57
2513 7818 9.084533 GACCTTGACTAGATTTCCTACAGATAT 57.915 37.037 0.00 0.00 0.00 1.63
2545 7852 7.672239 AGGGTTTAGGATGCTGTAAAACAATTA 59.328 33.333 11.67 0.00 32.89 1.40
2568 7875 2.481289 ACTTCTAGTTGCTGCTTCCC 57.519 50.000 0.00 0.00 0.00 3.97
2574 7881 4.269523 TTGCTGCTTCCCGCCACT 62.270 61.111 0.00 0.00 38.05 4.00
2583 7890 3.211045 GCTTCCCGCCACTAATGAATTA 58.789 45.455 0.00 0.00 0.00 1.40
2618 7925 3.836949 AGTGCCGCATGACAAAATAAAG 58.163 40.909 0.00 0.00 0.00 1.85
2636 7943 9.586435 AAAATAAAGAAGTATTGTATGGCAAGC 57.414 29.630 0.00 0.00 40.86 4.01
2657 7964 4.872691 AGCTCAGAATTTTGGTATCGTGAG 59.127 41.667 0.00 0.00 34.55 3.51
3059 8368 2.925170 ACCGCCTCCTGCTTCTGT 60.925 61.111 0.00 0.00 38.05 3.41
3098 8407 0.745845 GATTCCCGCAGCAGACATGT 60.746 55.000 0.00 0.00 0.00 3.21
3128 8437 0.603707 CGGCACCACAGTCTGTTCAT 60.604 55.000 1.67 0.00 0.00 2.57
3167 8476 2.007114 CAACGACGCAACGACGAGA 61.007 57.895 17.52 0.00 46.01 4.04
3171 8480 0.025898 CGACGCAACGACGAGATCTA 59.974 55.000 0.00 0.00 46.01 1.98
3226 8535 7.812309 TGTATTCTGTTTCAGTTCATCTACG 57.188 36.000 0.00 0.00 32.61 3.51
3435 8744 3.565307 ACAATGTCAACAGGTTGGACAT 58.435 40.909 11.87 15.01 40.03 3.06
3491 8800 9.535878 TTTTGTCGATTAATTTAAGGTGCTTTT 57.464 25.926 0.00 0.00 0.00 2.27
3601 8911 1.757682 TCTAAAATTCCCCGCGCATT 58.242 45.000 8.75 0.00 0.00 3.56
3631 8941 5.237344 ACCTATGTATTGCTTCTGCGATTTC 59.763 40.000 0.00 0.00 42.81 2.17
3693 9003 9.725019 TTGATGTACATAGTTTGTGAAGAGAAT 57.275 29.630 8.71 0.00 39.48 2.40
4144 11006 5.230726 GCATGTTTTCTGCTTGTATGTATGC 59.769 40.000 0.00 0.00 36.68 3.14
4641 11516 7.608153 TCTTGTAGTACTATGTAAAGCAAGCA 58.392 34.615 16.57 7.92 33.15 3.91
4644 11519 7.327975 TGTAGTACTATGTAAAGCAAGCATGT 58.672 34.615 5.75 0.00 0.00 3.21
4663 11538 5.183140 GCATGTCCAACACATAGTTTAGGTT 59.817 40.000 0.00 0.00 44.60 3.50
4713 11588 3.270877 CCTTCTTTTGTGCCGCTACTAT 58.729 45.455 0.00 0.00 0.00 2.12
4814 11694 6.595716 CGATTCTGTAGGGAGAAAAAGTTCAT 59.404 38.462 0.00 0.00 35.60 2.57
5020 11902 2.899838 GCCCGCCGCAATGTCATA 60.900 61.111 0.00 0.00 37.47 2.15
5021 11903 2.896801 GCCCGCCGCAATGTCATAG 61.897 63.158 0.00 0.00 37.47 2.23
5025 11907 0.027979 CGCCGCAATGTCATAGTTGG 59.972 55.000 0.00 0.00 0.00 3.77
5059 11941 3.640967 AGTTGGATGGCTACTGATCTCTC 59.359 47.826 0.00 0.00 0.00 3.20
5071 11953 5.428184 ACTGATCTCTCTAAAACCTTGGG 57.572 43.478 0.00 0.00 0.00 4.12
5127 12009 6.622427 AGGTAAAACTGAATGTACCTAGCT 57.378 37.500 0.00 0.00 43.61 3.32
5192 12074 1.651138 GTCGAACTCACATCTGCTTCG 59.349 52.381 0.00 0.00 36.02 3.79
5430 12347 4.574599 AGTTCTTGTTTGGATGTTCAGC 57.425 40.909 0.00 0.00 0.00 4.26
5519 12460 7.094631 TGTAGTTCTTGTTTATATGTCGTGCT 58.905 34.615 0.00 0.00 0.00 4.40
5980 13534 2.306805 AGATGAGGATGTTTGTGCCTGA 59.693 45.455 0.00 0.00 30.70 3.86
5981 13535 2.189594 TGAGGATGTTTGTGCCTGAG 57.810 50.000 0.00 0.00 30.70 3.35
5982 13536 1.421268 TGAGGATGTTTGTGCCTGAGT 59.579 47.619 0.00 0.00 30.70 3.41
5983 13537 2.079925 GAGGATGTTTGTGCCTGAGTC 58.920 52.381 0.00 0.00 30.70 3.36
5984 13538 1.701847 AGGATGTTTGTGCCTGAGTCT 59.298 47.619 0.00 0.00 0.00 3.24
5985 13539 2.107204 AGGATGTTTGTGCCTGAGTCTT 59.893 45.455 0.00 0.00 0.00 3.01
5986 13540 2.227388 GGATGTTTGTGCCTGAGTCTTG 59.773 50.000 0.00 0.00 0.00 3.02
5987 13541 2.708216 TGTTTGTGCCTGAGTCTTGA 57.292 45.000 0.00 0.00 0.00 3.02
5988 13542 2.997980 TGTTTGTGCCTGAGTCTTGAA 58.002 42.857 0.00 0.00 0.00 2.69
5989 13543 2.682856 TGTTTGTGCCTGAGTCTTGAAC 59.317 45.455 0.00 0.00 0.00 3.18
5990 13544 2.945668 GTTTGTGCCTGAGTCTTGAACT 59.054 45.455 0.00 0.00 42.42 3.01
5991 13545 3.281727 TTGTGCCTGAGTCTTGAACTT 57.718 42.857 0.00 0.00 38.74 2.66
5992 13546 3.281727 TGTGCCTGAGTCTTGAACTTT 57.718 42.857 0.00 0.00 38.74 2.66
5993 13547 4.415881 TGTGCCTGAGTCTTGAACTTTA 57.584 40.909 0.00 0.00 38.74 1.85
5994 13548 4.776349 TGTGCCTGAGTCTTGAACTTTAA 58.224 39.130 0.00 0.00 38.74 1.52
5995 13549 4.816385 TGTGCCTGAGTCTTGAACTTTAAG 59.184 41.667 0.00 0.00 38.74 1.85
5996 13550 5.057149 GTGCCTGAGTCTTGAACTTTAAGA 58.943 41.667 0.00 0.00 38.74 2.10
5997 13551 5.178438 GTGCCTGAGTCTTGAACTTTAAGAG 59.822 44.000 0.00 0.00 38.74 2.85
5998 13552 4.693095 GCCTGAGTCTTGAACTTTAAGAGG 59.307 45.833 0.00 0.00 38.74 3.69
5999 13553 5.743422 GCCTGAGTCTTGAACTTTAAGAGGT 60.743 44.000 0.00 0.00 38.74 3.85
6000 13554 6.292150 CCTGAGTCTTGAACTTTAAGAGGTT 58.708 40.000 0.00 0.00 38.74 3.50
6001 13555 7.442656 CCTGAGTCTTGAACTTTAAGAGGTTA 58.557 38.462 0.00 0.00 38.74 2.85
6002 13556 7.600752 CCTGAGTCTTGAACTTTAAGAGGTTAG 59.399 40.741 0.00 0.00 38.74 2.34
6003 13557 7.442656 TGAGTCTTGAACTTTAAGAGGTTAGG 58.557 38.462 0.00 0.00 38.74 2.69
6004 13558 6.770542 AGTCTTGAACTTTAAGAGGTTAGGG 58.229 40.000 0.00 0.00 33.03 3.53
6005 13559 5.938710 GTCTTGAACTTTAAGAGGTTAGGGG 59.061 44.000 0.00 0.00 35.03 4.79
6006 13560 5.847817 TCTTGAACTTTAAGAGGTTAGGGGA 59.152 40.000 0.00 0.00 31.04 4.81
6007 13561 5.757099 TGAACTTTAAGAGGTTAGGGGAG 57.243 43.478 0.00 0.00 0.00 4.30
6008 13562 5.408824 TGAACTTTAAGAGGTTAGGGGAGA 58.591 41.667 0.00 0.00 0.00 3.71
6009 13563 6.030082 TGAACTTTAAGAGGTTAGGGGAGAT 58.970 40.000 0.00 0.00 0.00 2.75
6010 13564 5.959583 ACTTTAAGAGGTTAGGGGAGATG 57.040 43.478 0.00 0.00 0.00 2.90
6011 13565 5.600749 ACTTTAAGAGGTTAGGGGAGATGA 58.399 41.667 0.00 0.00 0.00 2.92
6012 13566 6.030082 ACTTTAAGAGGTTAGGGGAGATGAA 58.970 40.000 0.00 0.00 0.00 2.57
6013 13567 6.678857 ACTTTAAGAGGTTAGGGGAGATGAAT 59.321 38.462 0.00 0.00 0.00 2.57
6014 13568 7.849904 ACTTTAAGAGGTTAGGGGAGATGAATA 59.150 37.037 0.00 0.00 0.00 1.75
6015 13569 8.632731 TTTAAGAGGTTAGGGGAGATGAATAA 57.367 34.615 0.00 0.00 0.00 1.40
6016 13570 8.814448 TTAAGAGGTTAGGGGAGATGAATAAT 57.186 34.615 0.00 0.00 0.00 1.28
6017 13571 7.713704 AAGAGGTTAGGGGAGATGAATAATT 57.286 36.000 0.00 0.00 0.00 1.40
6018 13572 7.713704 AGAGGTTAGGGGAGATGAATAATTT 57.286 36.000 0.00 0.00 0.00 1.82
6019 13573 7.750655 AGAGGTTAGGGGAGATGAATAATTTC 58.249 38.462 0.00 0.00 0.00 2.17
6020 13574 7.574372 AGAGGTTAGGGGAGATGAATAATTTCT 59.426 37.037 0.00 0.00 32.78 2.52
6021 13575 7.521669 AGGTTAGGGGAGATGAATAATTTCTG 58.478 38.462 0.00 0.00 32.78 3.02
6022 13576 7.129504 AGGTTAGGGGAGATGAATAATTTCTGT 59.870 37.037 0.00 0.00 32.78 3.41
6023 13577 7.445707 GGTTAGGGGAGATGAATAATTTCTGTC 59.554 40.741 0.00 0.00 32.78 3.51
6024 13578 6.581388 AGGGGAGATGAATAATTTCTGTCA 57.419 37.500 0.00 0.00 32.78 3.58
6025 13579 7.159201 AGGGGAGATGAATAATTTCTGTCAT 57.841 36.000 0.00 0.00 33.45 3.06
6026 13580 8.280258 AGGGGAGATGAATAATTTCTGTCATA 57.720 34.615 0.00 0.00 30.94 2.15
6027 13581 8.898728 AGGGGAGATGAATAATTTCTGTCATAT 58.101 33.333 0.00 0.00 30.94 1.78
6028 13582 8.954350 GGGGAGATGAATAATTTCTGTCATATG 58.046 37.037 0.00 0.00 30.94 1.78
6029 13583 9.730705 GGGAGATGAATAATTTCTGTCATATGA 57.269 33.333 0.00 0.00 30.94 2.15
6040 13594 8.752766 ATTTCTGTCATATGAAAGCACAAAAG 57.247 30.769 16.98 0.00 35.93 2.27
6041 13595 6.258230 TCTGTCATATGAAAGCACAAAAGG 57.742 37.500 16.98 0.00 29.41 3.11
6042 13596 5.769662 TCTGTCATATGAAAGCACAAAAGGT 59.230 36.000 16.98 0.00 29.41 3.50
6043 13597 6.265196 TCTGTCATATGAAAGCACAAAAGGTT 59.735 34.615 16.98 0.00 29.41 3.50
6044 13598 6.815089 TGTCATATGAAAGCACAAAAGGTTT 58.185 32.000 7.07 0.00 41.44 3.27
6045 13599 6.700960 TGTCATATGAAAGCACAAAAGGTTTG 59.299 34.615 7.07 0.00 39.12 2.93
6046 13600 6.922957 GTCATATGAAAGCACAAAAGGTTTGA 59.077 34.615 7.07 0.00 39.12 2.69
6047 13601 7.437862 GTCATATGAAAGCACAAAAGGTTTGAA 59.562 33.333 7.07 0.00 39.12 2.69
6048 13602 8.149647 TCATATGAAAGCACAAAAGGTTTGAAT 58.850 29.630 1.98 0.00 39.12 2.57
6049 13603 8.776470 CATATGAAAGCACAAAAGGTTTGAATT 58.224 29.630 7.68 0.00 39.12 2.17
6050 13604 9.995003 ATATGAAAGCACAAAAGGTTTGAATTA 57.005 25.926 7.68 0.00 39.12 1.40
6051 13605 8.729805 ATGAAAGCACAAAAGGTTTGAATTAA 57.270 26.923 7.68 0.00 39.12 1.40
6052 13606 8.553459 TGAAAGCACAAAAGGTTTGAATTAAA 57.447 26.923 7.68 0.00 39.12 1.52
6053 13607 9.003658 TGAAAGCACAAAAGGTTTGAATTAAAA 57.996 25.926 7.68 0.00 39.12 1.52
6081 13635 6.950545 TGATCAGTACAAGTTAAAAACCACG 58.049 36.000 0.00 0.00 0.00 4.94
6082 13636 6.762187 TGATCAGTACAAGTTAAAAACCACGA 59.238 34.615 0.00 0.00 0.00 4.35
6083 13637 7.442969 TGATCAGTACAAGTTAAAAACCACGAT 59.557 33.333 0.00 0.00 0.00 3.73
6084 13638 7.181143 TCAGTACAAGTTAAAAACCACGATC 57.819 36.000 0.00 0.00 0.00 3.69
6085 13639 6.762187 TCAGTACAAGTTAAAAACCACGATCA 59.238 34.615 0.00 0.00 0.00 2.92
6086 13640 7.042321 TCAGTACAAGTTAAAAACCACGATCAG 60.042 37.037 0.00 0.00 0.00 2.90
6087 13641 6.764560 AGTACAAGTTAAAAACCACGATCAGT 59.235 34.615 0.00 0.00 0.00 3.41
6088 13642 6.445357 ACAAGTTAAAAACCACGATCAGTT 57.555 33.333 0.00 0.00 0.00 3.16
6089 13643 6.859017 ACAAGTTAAAAACCACGATCAGTTT 58.141 32.000 0.00 0.00 37.80 2.66
6090 13644 6.750039 ACAAGTTAAAAACCACGATCAGTTTG 59.250 34.615 6.34 0.51 36.36 2.93
6091 13645 5.827666 AGTTAAAAACCACGATCAGTTTGG 58.172 37.500 6.34 2.98 36.36 3.28
6092 13646 5.591067 AGTTAAAAACCACGATCAGTTTGGA 59.409 36.000 6.34 0.00 36.36 3.53
6093 13647 4.993029 AAAAACCACGATCAGTTTGGAA 57.007 36.364 6.34 0.00 36.36 3.53
6094 13648 5.529581 AAAAACCACGATCAGTTTGGAAT 57.470 34.783 6.34 0.00 36.36 3.01
6095 13649 6.642707 AAAAACCACGATCAGTTTGGAATA 57.357 33.333 6.34 0.00 36.36 1.75
6096 13650 6.642707 AAAACCACGATCAGTTTGGAATAA 57.357 33.333 6.34 0.00 36.36 1.40
6097 13651 6.642707 AAACCACGATCAGTTTGGAATAAA 57.357 33.333 6.65 0.00 34.97 1.40
6098 13652 6.642707 AACCACGATCAGTTTGGAATAAAA 57.357 33.333 6.65 0.00 34.24 1.52
6099 13653 6.642707 ACCACGATCAGTTTGGAATAAAAA 57.357 33.333 6.65 0.00 34.24 1.94
6100 13654 7.227049 ACCACGATCAGTTTGGAATAAAAAT 57.773 32.000 6.65 0.00 34.24 1.82
6101 13655 8.343168 ACCACGATCAGTTTGGAATAAAAATA 57.657 30.769 6.65 0.00 34.24 1.40
6102 13656 8.798402 ACCACGATCAGTTTGGAATAAAAATAA 58.202 29.630 6.65 0.00 34.24 1.40
6103 13657 9.632807 CCACGATCAGTTTGGAATAAAAATAAA 57.367 29.630 0.00 0.00 31.39 1.40
6125 13679 7.472334 AAATTGCTAAGATGAGGATGTTTGT 57.528 32.000 0.00 0.00 0.00 2.83
6126 13680 5.885230 TTGCTAAGATGAGGATGTTTGTG 57.115 39.130 0.00 0.00 0.00 3.33
6127 13681 3.691118 TGCTAAGATGAGGATGTTTGTGC 59.309 43.478 0.00 0.00 0.00 4.57
6128 13682 3.065925 GCTAAGATGAGGATGTTTGTGCC 59.934 47.826 0.00 0.00 0.00 5.01
6129 13683 3.446442 AAGATGAGGATGTTTGTGCCT 57.554 42.857 0.00 0.00 33.97 4.75
6130 13684 2.719739 AGATGAGGATGTTTGTGCCTG 58.280 47.619 0.00 0.00 30.70 4.85
6333 14041 3.429085 GTGCCAATAAAGTTCGCATCAG 58.571 45.455 0.00 0.00 0.00 2.90
6336 14044 4.098416 GCCAATAAAGTTCGCATCAGTTC 58.902 43.478 0.00 0.00 0.00 3.01
6347 14055 0.171231 CATCAGTTCGAGAGGCACGA 59.829 55.000 0.00 0.00 37.99 4.35
6366 14074 4.331168 CACGAAAAAGAAAATTTGGTGCCA 59.669 37.500 0.00 0.00 38.83 4.92
6375 14083 7.728847 AGAAAATTTGGTGCCAATAAAGTTC 57.271 32.000 4.32 5.26 35.70 3.01
6476 14184 4.571580 ACTGATCCGTACAAACAAAAACGA 59.428 37.500 0.00 0.00 37.53 3.85
6483 14191 3.073144 ACAAACAAAAACGATGGTCCG 57.927 42.857 0.00 0.00 0.00 4.79
6497 14205 3.396260 TGGTCCGTTCTACAAAGGAAG 57.604 47.619 0.00 0.00 41.30 3.46
6543 14251 5.159399 TCAGTACAAGTTAAAAACGGTGC 57.841 39.130 0.00 0.00 36.23 5.01
6569 14277 6.205076 TCCGTTCGGAATAAAAGAAATGACAA 59.795 34.615 11.66 0.00 0.00 3.18
6604 14312 7.589574 TGTAAAAGTTCAAGCAAAAGGAAAC 57.410 32.000 0.00 0.00 0.00 2.78
6633 14341 8.986847 CATGCAATTCAAATGGTAAAAGTACAA 58.013 29.630 0.00 0.00 31.21 2.41
6668 14376 4.035208 ACAAAAGTCCAGAACATCGTTGTC 59.965 41.667 0.00 0.00 34.06 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 18 0.741326 TGCTCTAGCCTTGCTACTCG 59.259 55.000 0.00 0.00 40.44 4.18
18 20 1.339610 CGATGCTCTAGCCTTGCTACT 59.660 52.381 0.00 0.00 40.44 2.57
61 63 4.574674 TCATCCACTGCTAACTCCATTT 57.425 40.909 0.00 0.00 0.00 2.32
80 82 8.311395 ACTCCATTGATCTACTCAGTAAATCA 57.689 34.615 0.00 0.00 34.68 2.57
81 83 9.606631 AAACTCCATTGATCTACTCAGTAAATC 57.393 33.333 0.00 0.00 34.68 2.17
126 130 2.277591 CCTGGTCCCGTACGTCCAA 61.278 63.158 15.21 4.49 0.00 3.53
149 153 4.523173 CGGGATGGTGTACACAGACTATAT 59.477 45.833 26.51 9.12 0.00 0.86
234 1797 8.523915 TTGATTTACTAGGAAATGCATGTCAT 57.476 30.769 17.90 14.16 36.87 3.06
279 1842 2.039818 TTGTGTTACTTGAACGGCCA 57.960 45.000 2.24 0.00 41.35 5.36
316 1879 6.705302 TCTTGAACTGATGAGCTTGAACTAT 58.295 36.000 0.00 0.00 0.00 2.12
340 1903 4.000988 CGTTTCTGGCTAACCACATACTT 58.999 43.478 0.00 0.00 42.67 2.24
387 1950 9.773328 CGTCATCATTATCTTTTGTACAATGTT 57.227 29.630 9.56 3.92 0.00 2.71
409 1972 1.176619 ATGTGTGGTCGTCTCCGTCA 61.177 55.000 0.00 0.00 35.01 4.35
428 1991 0.836400 GGGAACTCTGTCCTCCACCA 60.836 60.000 0.00 0.00 37.85 4.17
465 2028 2.677836 CACATCAGTACGGAAACCCATG 59.322 50.000 0.00 0.00 0.00 3.66
467 2030 1.002659 CCACATCAGTACGGAAACCCA 59.997 52.381 0.00 0.00 0.00 4.51
510 2075 4.670992 GCATCAGTTTGTGCATCAGTACAG 60.671 45.833 0.00 0.00 41.42 2.74
511 2076 3.189080 GCATCAGTTTGTGCATCAGTACA 59.811 43.478 0.00 0.00 40.94 2.90
549 2114 4.260743 CGCATGACACTCTTTGTTTCAAGA 60.261 41.667 0.00 0.00 38.64 3.02
573 2138 3.748048 GTGCATCAGTAAGTGTGTGATGT 59.252 43.478 11.94 0.00 46.23 3.06
576 2141 2.403259 CGTGCATCAGTAAGTGTGTGA 58.597 47.619 0.00 0.00 0.00 3.58
627 2192 0.392998 CACTAGCCCTCGCCATGTTT 60.393 55.000 0.00 0.00 34.57 2.83
637 2202 1.289160 TCTGAATTGCCACTAGCCCT 58.711 50.000 0.00 0.00 42.71 5.19
638 2203 2.128771 TTCTGAATTGCCACTAGCCC 57.871 50.000 0.00 0.00 42.71 5.19
677 2243 6.645415 GTCAAATCTCGACCATAATATTCGGT 59.355 38.462 8.81 8.81 35.12 4.69
694 2260 5.355350 GCTGCTTACCATACAAGTCAAATCT 59.645 40.000 0.00 0.00 0.00 2.40
699 2265 2.616960 CGCTGCTTACCATACAAGTCA 58.383 47.619 0.00 0.00 0.00 3.41
711 2277 0.108377 TCCAAATCGAGCGCTGCTTA 60.108 50.000 18.48 0.00 39.88 3.09
726 2292 0.687354 GACCCTGCTTCTCAGTCCAA 59.313 55.000 0.00 0.00 41.25 3.53
748 2314 1.142748 CTTCCTCCCGCTAGCAGTG 59.857 63.158 16.45 6.20 0.00 3.66
749 2315 1.000486 TCTTCCTCCCGCTAGCAGT 60.000 57.895 16.45 0.00 0.00 4.40
755 2321 1.687493 CCCTTCTCTTCCTCCCGCT 60.687 63.158 0.00 0.00 0.00 5.52
792 2362 1.228831 TTCCCCTAACCACCGTCGA 60.229 57.895 0.00 0.00 0.00 4.20
803 2373 0.118346 TGTTCCTGCTCCTTCCCCTA 59.882 55.000 0.00 0.00 0.00 3.53
850 2420 2.734346 CGTCGGGCCGTTAAACGT 60.734 61.111 27.32 0.00 40.58 3.99
886 2456 0.390340 CAGACATGGTGACCGTCCTG 60.390 60.000 6.11 7.09 33.46 3.86
914 2485 1.530771 CATCCTCTCCTGCCCCAAG 59.469 63.158 0.00 0.00 0.00 3.61
948 2519 2.926242 TCCCACTTCCCACGGACC 60.926 66.667 0.00 0.00 0.00 4.46
987 2569 4.839706 GCCATGGCCCCGGTCATT 62.840 66.667 27.24 0.00 38.53 2.57
1007 2589 0.109723 GCCACCACTACCTTCCACAA 59.890 55.000 0.00 0.00 0.00 3.33
1113 2695 2.149383 AACACCTCCCAGAGCTGCA 61.149 57.895 1.02 0.00 0.00 4.41
1168 2750 2.535317 ACCCCCAATCCCACAGCT 60.535 61.111 0.00 0.00 0.00 4.24
1184 2771 3.330720 CCACCTCCCACCCCTGAC 61.331 72.222 0.00 0.00 0.00 3.51
1301 2890 5.820947 GGGCGAGGGGTAACATAATAATATG 59.179 44.000 0.00 0.00 43.79 1.78
1342 2931 5.699458 CGGGAAGTTTCTACTGTTGTATGTT 59.301 40.000 0.00 0.00 34.01 2.71
1343 2932 5.011329 TCGGGAAGTTTCTACTGTTGTATGT 59.989 40.000 0.00 0.00 34.01 2.29
1346 2935 4.262164 GGTCGGGAAGTTTCTACTGTTGTA 60.262 45.833 0.00 0.00 34.01 2.41
1349 2938 2.701951 TGGTCGGGAAGTTTCTACTGTT 59.298 45.455 0.00 0.00 34.01 3.16
1371 2961 1.540617 GAGGTGGGTAGGTTGGGGT 60.541 63.158 0.00 0.00 0.00 4.95
1460 3050 4.363990 CGTCAGCGGCCAGTCACT 62.364 66.667 2.24 0.00 0.00 3.41
1473 3063 0.976073 GGAAGGAGGTGGATCCGTCA 60.976 60.000 7.39 0.00 46.19 4.35
1544 3134 1.888436 AAGGTCATCGGCGCTCTTGA 61.888 55.000 7.64 4.90 0.00 3.02
1548 3138 3.567797 GCAAGGTCATCGGCGCTC 61.568 66.667 7.64 0.00 0.00 5.03
1551 3141 1.424493 GAAGAGCAAGGTCATCGGCG 61.424 60.000 0.00 0.00 0.00 6.46
1554 3144 2.093764 AGGAAGAAGAGCAAGGTCATCG 60.094 50.000 1.84 0.00 0.00 3.84
1556 3146 2.238395 GGAGGAAGAAGAGCAAGGTCAT 59.762 50.000 1.84 0.00 0.00 3.06
1708 3348 0.944999 TAGGAGGAGGAAGGAGGCAT 59.055 55.000 0.00 0.00 0.00 4.40
1747 3387 1.613630 GGAGGAGGAAGGAGGTGCA 60.614 63.158 0.00 0.00 0.00 4.57
1779 3422 2.047560 GTAAGGAAGTGCGGCCGT 60.048 61.111 28.70 6.29 0.00 5.68
1781 3424 1.449778 GGAGTAAGGAAGTGCGGCC 60.450 63.158 0.00 0.00 0.00 6.13
1789 3432 1.839994 CATGGCAGGAGGAGTAAGGAA 59.160 52.381 0.00 0.00 0.00 3.36
1951 3604 1.826720 GGTCCGGTACTGTGGTTATGA 59.173 52.381 0.00 0.00 0.00 2.15
2104 7407 4.215908 TCTTACCTCCATAGTGCAGTAGG 58.784 47.826 7.45 6.83 0.00 3.18
2196 7500 7.020010 CACTTGCAGAACAAAGAGACATATTC 58.980 38.462 0.00 0.00 37.96 1.75
2274 7579 1.374252 GGACACCGACGATGTGCTT 60.374 57.895 6.60 0.00 37.22 3.91
2389 7694 9.237846 GAATTGTAGCAATGTTAAGGAAATAGC 57.762 33.333 0.00 0.00 0.00 2.97
2418 7723 9.490083 AGTACTAGTAGGACTCAACCATAAATT 57.510 33.333 9.44 0.00 0.00 1.82
2420 7725 8.111545 TCAGTACTAGTAGGACTCAACCATAAA 58.888 37.037 12.45 0.00 0.00 1.40
2475 7780 4.982241 AGTCAAGGTCTCAGGAATCAAA 57.018 40.909 0.00 0.00 0.00 2.69
2513 7818 1.992557 AGCATCCTAAACCCTGAACCA 59.007 47.619 0.00 0.00 0.00 3.67
2545 7852 5.509840 CGGGAAGCAGCAACTAGAAGTATAT 60.510 44.000 0.00 0.00 0.00 0.86
2568 7875 5.173774 ACTTGCATAATTCATTAGTGGCG 57.826 39.130 0.00 0.00 0.00 5.69
2574 7881 9.844790 CACTCTTTGAACTTGCATAATTCATTA 57.155 29.630 8.19 1.55 32.61 1.90
2583 7890 1.267806 CGGCACTCTTTGAACTTGCAT 59.732 47.619 0.00 0.00 34.76 3.96
2618 7925 5.118990 TCTGAGCTTGCCATACAATACTTC 58.881 41.667 0.00 0.00 37.72 3.01
2636 7943 6.591834 ACTTCTCACGATACCAAAATTCTGAG 59.408 38.462 0.00 0.00 0.00 3.35
2733 8041 8.677300 GCTCATTTGTACCTTCATCATAGAAAA 58.323 33.333 0.00 0.00 0.00 2.29
2937 8246 9.097257 CACAAATTCAGACACCAAAACTAAAAT 57.903 29.630 0.00 0.00 0.00 1.82
3122 8431 0.533085 TCGGTTGTCGGCAATGAACA 60.533 50.000 5.40 0.00 39.77 3.18
3167 8476 0.650558 AGGAAGGGGGAAGGCTAGAT 59.349 55.000 0.00 0.00 0.00 1.98
3171 8480 0.478589 AAAGAGGAAGGGGGAAGGCT 60.479 55.000 0.00 0.00 0.00 4.58
3226 8535 8.759260 GATGAAATCAAACTTATGATCGACAC 57.241 34.615 0.00 0.00 44.70 3.67
3283 8592 9.747898 ATGAACTGAACTAAATACAAATACCCA 57.252 29.630 0.00 0.00 0.00 4.51
3297 8606 4.461431 TCGGCAAGTAGATGAACTGAACTA 59.539 41.667 0.00 0.00 0.00 2.24
3435 8744 5.344743 CTCTATGCACAAAAGAGGGAGTA 57.655 43.478 8.59 0.00 34.40 2.59
3491 8800 6.153510 TGCCTGTGCACCAAAATTGTAATATA 59.846 34.615 15.69 0.00 44.23 0.86
3492 8801 5.046735 TGCCTGTGCACCAAAATTGTAATAT 60.047 36.000 15.69 0.00 44.23 1.28
3601 8911 6.513180 GCAGAAGCAATACATAGGTGTACTA 58.487 40.000 0.00 0.00 41.12 1.82
3693 9003 8.253810 TCCATCGGCAAAATGAATTACAAAATA 58.746 29.630 0.00 0.00 0.00 1.40
4058 10170 5.906073 AGATCAAGTCCCAAAACTTTTGTG 58.094 37.500 12.28 2.43 37.38 3.33
4287 11157 5.931532 ACTTTTGAACTTCATGTATGCTCG 58.068 37.500 0.00 0.00 0.00 5.03
4644 11519 4.453136 GCGAAACCTAAACTATGTGTTGGA 59.547 41.667 0.00 0.00 39.13 3.53
4663 11538 1.527034 ACAGTGAGTACTACCGCGAA 58.473 50.000 8.23 0.00 34.74 4.70
5014 11896 7.056006 ACTATGAAATGCATCCAACTATGACA 58.944 34.615 0.00 0.00 38.44 3.58
5019 11901 6.422333 TCCAACTATGAAATGCATCCAACTA 58.578 36.000 0.00 0.00 38.44 2.24
5020 11902 5.263599 TCCAACTATGAAATGCATCCAACT 58.736 37.500 0.00 0.00 38.44 3.16
5021 11903 5.581126 TCCAACTATGAAATGCATCCAAC 57.419 39.130 0.00 0.00 38.44 3.77
5025 11907 4.280174 AGCCATCCAACTATGAAATGCATC 59.720 41.667 0.00 0.00 38.44 3.91
5059 11941 1.541588 GCACTGCTCCCAAGGTTTTAG 59.458 52.381 0.00 0.00 0.00 1.85
5127 12009 9.109393 GCACAAGGAGATTATGTTATTGAACTA 57.891 33.333 0.00 0.00 36.45 2.24
5141 12023 5.140454 ACTACCTTTTTGCACAAGGAGATT 58.860 37.500 24.75 9.48 43.32 2.40
5363 12249 2.231380 GGTTCTGCCTTCTCCCCCA 61.231 63.158 0.00 0.00 0.00 4.96
5420 12325 3.135530 AGAGAAGGGTATGCTGAACATCC 59.864 47.826 0.00 0.00 40.38 3.51
5430 12347 9.347240 ACATAAATGAAATGAGAGAAGGGTATG 57.653 33.333 0.00 0.00 0.00 2.39
5519 12460 6.980978 TGGCAAAATCGACAATTTTTGAACTA 59.019 30.769 20.60 4.60 43.51 2.24
5759 13312 6.161381 ACTGATCGGTGTTTTTAACTCGTAT 58.839 36.000 6.33 0.00 33.20 3.06
5775 13328 9.846248 AATTTCTTTTTATTCTGAACTGATCGG 57.154 29.630 0.00 0.00 35.59 4.18
5811 13365 2.508526 AGACTCAGGCACAAACATTCC 58.491 47.619 0.00 0.00 0.00 3.01
5813 13367 3.554934 TCAAGACTCAGGCACAAACATT 58.445 40.909 0.00 0.00 0.00 2.71
5910 13464 7.814107 ACTGATCGGTGTTTTTAACTCGTATTA 59.186 33.333 6.33 0.00 33.20 0.98
5912 13466 6.161381 ACTGATCGGTGTTTTTAACTCGTAT 58.839 36.000 6.33 0.00 33.20 3.06
5980 13534 6.239915 CCCCTAACCTCTTAAAGTTCAAGACT 60.240 42.308 0.00 0.00 41.47 3.24
5981 13535 5.938710 CCCCTAACCTCTTAAAGTTCAAGAC 59.061 44.000 0.00 0.00 0.00 3.01
5982 13536 5.847817 TCCCCTAACCTCTTAAAGTTCAAGA 59.152 40.000 0.00 0.00 0.00 3.02
5983 13537 6.013639 TCTCCCCTAACCTCTTAAAGTTCAAG 60.014 42.308 0.00 0.00 0.00 3.02
5984 13538 5.847817 TCTCCCCTAACCTCTTAAAGTTCAA 59.152 40.000 0.00 0.00 0.00 2.69
5985 13539 5.408824 TCTCCCCTAACCTCTTAAAGTTCA 58.591 41.667 0.00 0.00 0.00 3.18
5986 13540 6.156429 TCATCTCCCCTAACCTCTTAAAGTTC 59.844 42.308 0.00 0.00 0.00 3.01
5987 13541 6.030082 TCATCTCCCCTAACCTCTTAAAGTT 58.970 40.000 0.00 0.00 0.00 2.66
5988 13542 5.600749 TCATCTCCCCTAACCTCTTAAAGT 58.399 41.667 0.00 0.00 0.00 2.66
5989 13543 6.561519 TTCATCTCCCCTAACCTCTTAAAG 57.438 41.667 0.00 0.00 0.00 1.85
5990 13544 8.632731 TTATTCATCTCCCCTAACCTCTTAAA 57.367 34.615 0.00 0.00 0.00 1.52
5991 13545 8.814448 ATTATTCATCTCCCCTAACCTCTTAA 57.186 34.615 0.00 0.00 0.00 1.85
5992 13546 8.814448 AATTATTCATCTCCCCTAACCTCTTA 57.186 34.615 0.00 0.00 0.00 2.10
5993 13547 7.713704 AATTATTCATCTCCCCTAACCTCTT 57.286 36.000 0.00 0.00 0.00 2.85
5994 13548 7.574372 AGAAATTATTCATCTCCCCTAACCTCT 59.426 37.037 0.00 0.00 38.06 3.69
5995 13549 7.663493 CAGAAATTATTCATCTCCCCTAACCTC 59.337 40.741 0.00 0.00 38.06 3.85
5996 13550 7.129504 ACAGAAATTATTCATCTCCCCTAACCT 59.870 37.037 0.00 0.00 38.06 3.50
5997 13551 7.290813 ACAGAAATTATTCATCTCCCCTAACC 58.709 38.462 0.00 0.00 38.06 2.85
5998 13552 7.993183 TGACAGAAATTATTCATCTCCCCTAAC 59.007 37.037 0.00 0.00 38.06 2.34
5999 13553 8.101309 TGACAGAAATTATTCATCTCCCCTAA 57.899 34.615 0.00 0.00 38.06 2.69
6000 13554 7.690454 TGACAGAAATTATTCATCTCCCCTA 57.310 36.000 0.00 0.00 38.06 3.53
6001 13555 6.581388 TGACAGAAATTATTCATCTCCCCT 57.419 37.500 0.00 0.00 38.06 4.79
6002 13556 8.954350 CATATGACAGAAATTATTCATCTCCCC 58.046 37.037 0.00 0.00 38.06 4.81
6003 13557 9.730705 TCATATGACAGAAATTATTCATCTCCC 57.269 33.333 0.00 0.00 38.06 4.30
6014 13568 9.199982 CTTTTGTGCTTTCATATGACAGAAATT 57.800 29.630 20.62 0.00 33.69 1.82
6015 13569 7.816031 CCTTTTGTGCTTTCATATGACAGAAAT 59.184 33.333 20.62 0.00 33.69 2.17
6016 13570 7.147312 CCTTTTGTGCTTTCATATGACAGAAA 58.853 34.615 20.62 15.31 33.17 2.52
6017 13571 6.265196 ACCTTTTGTGCTTTCATATGACAGAA 59.735 34.615 20.62 9.15 0.00 3.02
6018 13572 5.769662 ACCTTTTGTGCTTTCATATGACAGA 59.230 36.000 20.62 5.45 0.00 3.41
6019 13573 6.017400 ACCTTTTGTGCTTTCATATGACAG 57.983 37.500 13.54 13.54 0.00 3.51
6020 13574 6.403866 AACCTTTTGTGCTTTCATATGACA 57.596 33.333 4.48 0.00 0.00 3.58
6021 13575 6.922957 TCAAACCTTTTGTGCTTTCATATGAC 59.077 34.615 4.48 0.00 0.00 3.06
6022 13576 7.048629 TCAAACCTTTTGTGCTTTCATATGA 57.951 32.000 0.00 0.00 0.00 2.15
6023 13577 7.712264 TTCAAACCTTTTGTGCTTTCATATG 57.288 32.000 0.00 0.00 0.00 1.78
6024 13578 8.907222 AATTCAAACCTTTTGTGCTTTCATAT 57.093 26.923 0.00 0.00 0.00 1.78
6025 13579 9.823647 TTAATTCAAACCTTTTGTGCTTTCATA 57.176 25.926 0.00 0.00 0.00 2.15
6026 13580 8.729805 TTAATTCAAACCTTTTGTGCTTTCAT 57.270 26.923 0.00 0.00 0.00 2.57
6027 13581 8.553459 TTTAATTCAAACCTTTTGTGCTTTCA 57.447 26.923 0.00 0.00 0.00 2.69
6055 13609 8.073768 CGTGGTTTTTAACTTGTACTGATCAAT 58.926 33.333 0.00 0.00 0.00 2.57
6056 13610 7.280428 TCGTGGTTTTTAACTTGTACTGATCAA 59.720 33.333 0.00 0.00 0.00 2.57
6057 13611 6.762187 TCGTGGTTTTTAACTTGTACTGATCA 59.238 34.615 0.00 0.00 0.00 2.92
6058 13612 7.181143 TCGTGGTTTTTAACTTGTACTGATC 57.819 36.000 0.00 0.00 0.00 2.92
6059 13613 7.442969 TGATCGTGGTTTTTAACTTGTACTGAT 59.557 33.333 0.00 0.00 0.00 2.90
6060 13614 6.762187 TGATCGTGGTTTTTAACTTGTACTGA 59.238 34.615 0.00 0.00 0.00 3.41
6061 13615 6.950545 TGATCGTGGTTTTTAACTTGTACTG 58.049 36.000 0.00 0.00 0.00 2.74
6062 13616 6.764560 ACTGATCGTGGTTTTTAACTTGTACT 59.235 34.615 0.00 0.00 0.00 2.73
6063 13617 6.951643 ACTGATCGTGGTTTTTAACTTGTAC 58.048 36.000 0.00 0.00 0.00 2.90
6064 13618 7.556733 AACTGATCGTGGTTTTTAACTTGTA 57.443 32.000 0.00 0.00 0.00 2.41
6065 13619 6.445357 AACTGATCGTGGTTTTTAACTTGT 57.555 33.333 0.00 0.00 0.00 3.16
6066 13620 6.198216 CCAAACTGATCGTGGTTTTTAACTTG 59.802 38.462 8.03 0.00 34.01 3.16
6067 13621 6.095720 TCCAAACTGATCGTGGTTTTTAACTT 59.904 34.615 8.03 0.00 34.01 2.66
6068 13622 5.591067 TCCAAACTGATCGTGGTTTTTAACT 59.409 36.000 8.03 0.00 34.01 2.24
6069 13623 5.823353 TCCAAACTGATCGTGGTTTTTAAC 58.177 37.500 8.03 0.00 34.01 2.01
6070 13624 6.452494 TTCCAAACTGATCGTGGTTTTTAA 57.548 33.333 8.03 4.56 34.01 1.52
6071 13625 6.642707 ATTCCAAACTGATCGTGGTTTTTA 57.357 33.333 8.03 0.00 34.01 1.52
6072 13626 4.993029 TTCCAAACTGATCGTGGTTTTT 57.007 36.364 8.03 0.00 34.01 1.94
6073 13627 6.642707 TTATTCCAAACTGATCGTGGTTTT 57.357 33.333 8.03 0.00 34.01 2.43
6074 13628 6.642707 TTTATTCCAAACTGATCGTGGTTT 57.357 33.333 5.74 5.74 36.27 3.27
6075 13629 6.642707 TTTTATTCCAAACTGATCGTGGTT 57.357 33.333 4.92 0.01 33.88 3.67
6076 13630 6.642707 TTTTTATTCCAAACTGATCGTGGT 57.357 33.333 4.92 0.00 33.88 4.16
6077 13631 9.632807 TTTATTTTTATTCCAAACTGATCGTGG 57.367 29.630 0.00 0.00 0.00 4.94
6099 13653 9.193806 ACAAACATCCTCATCTTAGCAATTTAT 57.806 29.630 0.00 0.00 0.00 1.40
6100 13654 8.461222 CACAAACATCCTCATCTTAGCAATTTA 58.539 33.333 0.00 0.00 0.00 1.40
6101 13655 7.318141 CACAAACATCCTCATCTTAGCAATTT 58.682 34.615 0.00 0.00 0.00 1.82
6102 13656 6.626623 GCACAAACATCCTCATCTTAGCAATT 60.627 38.462 0.00 0.00 0.00 2.32
6103 13657 5.163581 GCACAAACATCCTCATCTTAGCAAT 60.164 40.000 0.00 0.00 0.00 3.56
6104 13658 4.156556 GCACAAACATCCTCATCTTAGCAA 59.843 41.667 0.00 0.00 0.00 3.91
6105 13659 3.691118 GCACAAACATCCTCATCTTAGCA 59.309 43.478 0.00 0.00 0.00 3.49
6106 13660 3.065925 GGCACAAACATCCTCATCTTAGC 59.934 47.826 0.00 0.00 0.00 3.09
6107 13661 4.334759 CAGGCACAAACATCCTCATCTTAG 59.665 45.833 0.00 0.00 0.00 2.18
6108 13662 4.019411 TCAGGCACAAACATCCTCATCTTA 60.019 41.667 0.00 0.00 0.00 2.10
6109 13663 3.087031 CAGGCACAAACATCCTCATCTT 58.913 45.455 0.00 0.00 0.00 2.40
6110 13664 2.306805 TCAGGCACAAACATCCTCATCT 59.693 45.455 0.00 0.00 0.00 2.90
6111 13665 2.681848 CTCAGGCACAAACATCCTCATC 59.318 50.000 0.00 0.00 0.00 2.92
6112 13666 2.040813 ACTCAGGCACAAACATCCTCAT 59.959 45.455 0.00 0.00 0.00 2.90
6113 13667 1.421268 ACTCAGGCACAAACATCCTCA 59.579 47.619 0.00 0.00 0.00 3.86
6114 13668 2.079925 GACTCAGGCACAAACATCCTC 58.920 52.381 0.00 0.00 0.00 3.71
6115 13669 1.701847 AGACTCAGGCACAAACATCCT 59.298 47.619 0.00 0.00 0.00 3.24
6116 13670 2.191128 AGACTCAGGCACAAACATCC 57.809 50.000 0.00 0.00 0.00 3.51
6117 13671 3.141398 TCAAGACTCAGGCACAAACATC 58.859 45.455 0.00 0.00 0.00 3.06
6118 13672 3.213206 TCAAGACTCAGGCACAAACAT 57.787 42.857 0.00 0.00 0.00 2.71
6119 13673 2.682856 GTTCAAGACTCAGGCACAAACA 59.317 45.455 0.00 0.00 0.00 2.83
6120 13674 2.945668 AGTTCAAGACTCAGGCACAAAC 59.054 45.455 0.00 0.00 31.20 2.93
6121 13675 3.281727 AGTTCAAGACTCAGGCACAAA 57.718 42.857 0.00 0.00 31.20 2.83
6122 13676 3.281727 AAGTTCAAGACTCAGGCACAA 57.718 42.857 0.00 0.00 37.72 3.33
6123 13677 3.281727 AAAGTTCAAGACTCAGGCACA 57.718 42.857 0.00 0.00 37.72 4.57
6124 13678 5.057149 TCTTAAAGTTCAAGACTCAGGCAC 58.943 41.667 0.00 0.00 37.72 5.01
6125 13679 5.290493 TCTTAAAGTTCAAGACTCAGGCA 57.710 39.130 0.00 0.00 37.72 4.75
6126 13680 4.693095 CCTCTTAAAGTTCAAGACTCAGGC 59.307 45.833 0.00 0.00 37.72 4.85
6127 13681 5.859495 ACCTCTTAAAGTTCAAGACTCAGG 58.141 41.667 0.00 0.00 37.72 3.86
6128 13682 6.516718 TGACCTCTTAAAGTTCAAGACTCAG 58.483 40.000 0.00 0.00 37.72 3.35
6129 13683 6.463049 CCTGACCTCTTAAAGTTCAAGACTCA 60.463 42.308 0.00 0.00 37.72 3.41
6130 13684 5.929415 CCTGACCTCTTAAAGTTCAAGACTC 59.071 44.000 0.00 0.00 37.72 3.36
6216 13924 8.475331 AACTGATCATCGTTTTTAACTCGTAT 57.525 30.769 0.00 0.00 0.00 3.06
6290 13998 7.439655 GGCACCAAATTTGTGTACTTGAATTTA 59.560 33.333 16.73 0.00 32.25 1.40
6302 14010 6.563753 CGAACTTTATTGGCACCAAATTTGTG 60.564 38.462 16.73 14.71 39.55 3.33
6333 14041 2.132762 TCTTTTTCGTGCCTCTCGAAC 58.867 47.619 3.65 0.00 44.87 3.95
6336 14044 3.602390 TTTTCTTTTTCGTGCCTCTCG 57.398 42.857 0.00 0.00 0.00 4.04
6347 14055 8.965819 ACTTTATTGGCACCAAATTTTCTTTTT 58.034 25.926 6.14 0.00 39.55 1.94
6386 14094 5.684704 TCTCATGTTTCCTTCTGAAGTTGT 58.315 37.500 15.72 0.00 33.63 3.32
6387 14095 6.624352 TTCTCATGTTTCCTTCTGAAGTTG 57.376 37.500 15.72 2.35 33.63 3.16
6389 14097 4.759183 GCTTCTCATGTTTCCTTCTGAAGT 59.241 41.667 15.72 0.00 33.63 3.01
6390 14098 5.002516 AGCTTCTCATGTTTCCTTCTGAAG 58.997 41.667 10.46 10.46 33.63 3.02
6393 14101 4.153835 GTGAGCTTCTCATGTTTCCTTCTG 59.846 45.833 0.00 0.00 42.73 3.02
6395 14103 4.067896 TGTGAGCTTCTCATGTTTCCTTC 58.932 43.478 0.00 0.00 42.73 3.46
6404 14112 8.242053 CACAGAATTAATTTGTGAGCTTCTCAT 58.758 33.333 24.21 0.22 42.73 2.90
6476 14184 3.581332 TCTTCCTTTGTAGAACGGACCAT 59.419 43.478 0.00 0.00 29.39 3.55
6524 14232 4.530388 GGAGCACCGTTTTTAACTTGTAC 58.470 43.478 0.00 0.00 0.00 2.90
6543 14251 6.128391 TGTCATTTCTTTTATTCCGAACGGAG 60.128 38.462 15.34 4.12 46.06 4.63
6604 14312 4.484537 TTACCATTTGAATTGCATGGGG 57.515 40.909 5.31 0.00 41.74 4.96
6646 14354 4.035091 TGACAACGATGTTCTGGACTTTTG 59.965 41.667 0.00 0.00 40.74 2.44
6648 14356 3.804036 TGACAACGATGTTCTGGACTTT 58.196 40.909 0.00 0.00 40.74 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.