Multiple sequence alignment - TraesCS4A01G142700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G142700 chr4A 100.000 3147 0 0 1 3147 231018345 231021491 0.000000e+00 5812.0
1 TraesCS4A01G142700 chr4A 98.237 851 14 1 183 1032 685755157 685756007 0.000000e+00 1487.0
2 TraesCS4A01G142700 chr4A 93.701 889 22 5 149 1031 599618024 599618884 0.000000e+00 1301.0
3 TraesCS4A01G142700 chr4A 94.286 35 2 0 237 271 685755238 685755272 2.000000e-03 54.7
4 TraesCS4A01G142700 chr4D 91.575 997 22 16 1054 2000 293380464 293381448 0.000000e+00 1319.0
5 TraesCS4A01G142700 chr4D 88.308 650 38 13 2339 2964 293381613 293382248 0.000000e+00 745.0
6 TraesCS4A01G142700 chr4D 90.741 108 2 1 2089 2188 293381478 293381585 1.520000e-28 137.0
7 TraesCS4A01G142700 chr4D 81.818 121 8 7 1 107 293380301 293380421 4.320000e-14 89.8
8 TraesCS4A01G142700 chr4D 87.179 78 10 0 2991 3068 293382252 293382329 4.320000e-14 89.8
9 TraesCS4A01G142700 chr4B 91.852 945 31 18 1064 1981 278411411 278412336 0.000000e+00 1277.0
10 TraesCS4A01G142700 chr4B 88.808 688 40 16 2399 3057 278412570 278413249 0.000000e+00 809.0
11 TraesCS4A01G142700 chr4B 81.308 107 9 9 1 105 278410948 278411045 3.370000e-10 76.8
12 TraesCS4A01G142700 chr4B 100.000 37 0 0 3070 3106 429347531 429347567 5.630000e-08 69.4
13 TraesCS4A01G142700 chrUn 96.484 768 20 4 270 1031 297327912 297327146 0.000000e+00 1262.0
14 TraesCS4A01G142700 chrUn 100.000 36 0 0 3066 3101 433706037 433706002 2.030000e-07 67.6
15 TraesCS4A01G142700 chr6B 94.715 738 31 4 298 1031 676500376 676499643 0.000000e+00 1140.0
16 TraesCS4A01G142700 chr2D 81.099 455 58 21 149 596 87415845 87416278 3.890000e-89 339.0
17 TraesCS4A01G142700 chr2D 89.831 59 6 0 148 206 58684443 58684385 3.370000e-10 76.8
18 TraesCS4A01G142700 chr7B 79.374 543 50 29 503 1031 678569477 678568983 3.030000e-85 326.0
19 TraesCS4A01G142700 chr2B 86.780 295 32 5 307 597 200861009 200860718 3.920000e-84 322.0
20 TraesCS4A01G142700 chr2B 80.407 393 56 14 652 1030 200860704 200860319 2.390000e-71 279.0
21 TraesCS4A01G142700 chr2B 81.944 144 25 1 1372 1514 99266252 99266395 1.530000e-23 121.0
22 TraesCS4A01G142700 chr2B 90.476 42 4 0 148 189 110129606 110129647 4.380000e-04 56.5
23 TraesCS4A01G142700 chr5B 85.171 263 33 6 338 597 354231378 354231119 6.690000e-67 265.0
24 TraesCS4A01G142700 chr5B 76.712 292 44 5 308 597 696096585 696096854 1.180000e-29 141.0
25 TraesCS4A01G142700 chr5B 83.824 136 13 5 148 274 696096469 696096604 1.530000e-23 121.0
26 TraesCS4A01G142700 chr5B 83.212 137 15 4 146 274 678867597 678867461 5.510000e-23 119.0
27 TraesCS4A01G142700 chr5B 74.230 357 47 25 695 1031 696096889 696097220 1.190000e-19 108.0
28 TraesCS4A01G142700 chr5B 93.478 46 3 0 148 193 17810080 17810035 5.630000e-08 69.4
29 TraesCS4A01G142700 chr3A 85.156 128 10 5 149 267 691468855 691468728 4.260000e-24 122.0
30 TraesCS4A01G142700 chr3A 100.000 37 0 0 3066 3102 733717064 733717028 5.630000e-08 69.4
31 TraesCS4A01G142700 chr3A 95.238 42 2 0 149 190 655651238 655651279 2.030000e-07 67.6
32 TraesCS4A01G142700 chr3A 88.235 51 2 4 3066 3115 375664782 375664735 1.220000e-04 58.4
33 TraesCS4A01G142700 chr2A 82.270 141 24 1 1375 1514 65182726 65182866 1.530000e-23 121.0
34 TraesCS4A01G142700 chr6A 79.630 162 20 7 879 1031 24053880 24053723 1.540000e-18 104.0
35 TraesCS4A01G142700 chr6A 97.500 40 1 0 3066 3105 579381905 579381944 5.630000e-08 69.4
36 TraesCS4A01G142700 chr1B 78.363 171 24 7 870 1031 8715165 8715331 7.180000e-17 99.0
37 TraesCS4A01G142700 chr1A 100.000 37 0 0 3066 3102 186732697 186732733 5.630000e-08 69.4
38 TraesCS4A01G142700 chr7A 97.500 40 0 1 3066 3104 127127483 127127444 2.030000e-07 67.6
39 TraesCS4A01G142700 chr7A 97.500 40 0 1 3066 3104 127128192 127128153 2.030000e-07 67.6
40 TraesCS4A01G142700 chr7A 97.297 37 1 0 3066 3102 608412344 608412380 2.620000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G142700 chr4A 231018345 231021491 3146 False 5812.000000 5812 100.000000 1 3147 1 chr4A.!!$F1 3146
1 TraesCS4A01G142700 chr4A 599618024 599618884 860 False 1301.000000 1301 93.701000 149 1031 1 chr4A.!!$F2 882
2 TraesCS4A01G142700 chr4A 685755157 685756007 850 False 770.850000 1487 96.261500 183 1032 2 chr4A.!!$F3 849
3 TraesCS4A01G142700 chr4D 293380301 293382329 2028 False 476.120000 1319 87.924200 1 3068 5 chr4D.!!$F1 3067
4 TraesCS4A01G142700 chr4B 278410948 278413249 2301 False 720.933333 1277 87.322667 1 3057 3 chr4B.!!$F2 3056
5 TraesCS4A01G142700 chrUn 297327146 297327912 766 True 1262.000000 1262 96.484000 270 1031 1 chrUn.!!$R1 761
6 TraesCS4A01G142700 chr6B 676499643 676500376 733 True 1140.000000 1140 94.715000 298 1031 1 chr6B.!!$R1 733
7 TraesCS4A01G142700 chr2B 200860319 200861009 690 True 300.500000 322 83.593500 307 1030 2 chr2B.!!$R1 723

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
125 140 0.179134 CCGATCTCGACCTTCACACC 60.179 60.0 0.22 0.00 43.02 4.16 F
126 141 0.523546 CGATCTCGACCTTCACACCG 60.524 60.0 0.00 0.00 43.02 4.94 F
1165 1562 0.301987 GGAAGAGTTAATCTGCGCGC 59.698 55.0 27.26 27.26 38.67 6.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1047 1088 0.466543 ACACGCAACTACACAAGGGA 59.533 50.0 0.00 0.0 0.00 4.20 R
1259 1656 1.103803 TCTTGTAGGAGTAGCCGCTG 58.896 55.0 2.16 0.0 43.43 5.18 R
2327 2791 0.040942 TGAAGCAGCTCCTCTCCTCT 59.959 55.0 0.00 0.0 0.00 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 60 4.266070 GACCTCCGCGCGCATCTA 62.266 66.667 32.61 11.69 0.00 1.98
71 85 3.995077 ACTACTACCTATCTCCATCCCCA 59.005 47.826 0.00 0.00 0.00 4.96
72 86 4.612945 ACTACTACCTATCTCCATCCCCAT 59.387 45.833 0.00 0.00 0.00 4.00
73 87 3.796111 ACTACCTATCTCCATCCCCATG 58.204 50.000 0.00 0.00 0.00 3.66
90 105 5.935789 TCCCCATGCGTTTAAGCTAATATAC 59.064 40.000 0.00 0.00 38.13 1.47
107 122 7.982354 GCTAATATACTCTCTCTCTCTCTCTCC 59.018 44.444 0.00 0.00 0.00 3.71
108 123 4.873746 ATACTCTCTCTCTCTCTCTCCG 57.126 50.000 0.00 0.00 0.00 4.63
109 124 2.747177 ACTCTCTCTCTCTCTCTCCGA 58.253 52.381 0.00 0.00 0.00 4.55
110 125 3.309296 ACTCTCTCTCTCTCTCTCCGAT 58.691 50.000 0.00 0.00 0.00 4.18
111 126 3.322254 ACTCTCTCTCTCTCTCTCCGATC 59.678 52.174 0.00 0.00 0.00 3.69
112 127 3.576118 CTCTCTCTCTCTCTCTCCGATCT 59.424 52.174 0.00 0.00 0.00 2.75
113 128 3.574396 TCTCTCTCTCTCTCTCCGATCTC 59.426 52.174 0.00 0.00 0.00 2.75
114 129 2.296190 TCTCTCTCTCTCTCCGATCTCG 59.704 54.545 0.00 0.00 39.44 4.04
115 130 2.296190 CTCTCTCTCTCTCCGATCTCGA 59.704 54.545 0.22 0.00 43.02 4.04
117 132 1.069513 TCTCTCTCTCCGATCTCGACC 59.930 57.143 0.22 0.00 43.02 4.79
118 133 1.070134 CTCTCTCTCCGATCTCGACCT 59.930 57.143 0.22 0.00 43.02 3.85
121 136 1.209747 TCTCTCCGATCTCGACCTTCA 59.790 52.381 0.22 0.00 43.02 3.02
123 138 1.095600 CTCCGATCTCGACCTTCACA 58.904 55.000 0.22 0.00 43.02 3.58
125 140 0.179134 CCGATCTCGACCTTCACACC 60.179 60.000 0.22 0.00 43.02 4.16
126 141 0.523546 CGATCTCGACCTTCACACCG 60.524 60.000 0.00 0.00 43.02 4.94
127 142 0.809385 GATCTCGACCTTCACACCGA 59.191 55.000 0.00 0.00 0.00 4.69
128 143 1.405821 GATCTCGACCTTCACACCGAT 59.594 52.381 0.00 0.00 0.00 4.18
129 144 2.118313 TCTCGACCTTCACACCGATA 57.882 50.000 0.00 0.00 0.00 2.92
130 145 2.439409 TCTCGACCTTCACACCGATAA 58.561 47.619 0.00 0.00 0.00 1.75
131 146 2.821378 TCTCGACCTTCACACCGATAAA 59.179 45.455 0.00 0.00 0.00 1.40
132 147 3.256383 TCTCGACCTTCACACCGATAAAA 59.744 43.478 0.00 0.00 0.00 1.52
133 148 3.991773 CTCGACCTTCACACCGATAAAAA 59.008 43.478 0.00 0.00 0.00 1.94
134 149 3.991773 TCGACCTTCACACCGATAAAAAG 59.008 43.478 0.00 0.00 0.00 2.27
135 150 3.124636 CGACCTTCACACCGATAAAAAGG 59.875 47.826 0.00 0.00 39.32 3.11
136 151 4.320870 GACCTTCACACCGATAAAAAGGA 58.679 43.478 5.99 0.00 37.34 3.36
137 152 4.324267 ACCTTCACACCGATAAAAAGGAG 58.676 43.478 5.99 0.00 37.34 3.69
138 153 4.202430 ACCTTCACACCGATAAAAAGGAGT 60.202 41.667 5.99 0.00 37.34 3.85
139 154 4.760204 CCTTCACACCGATAAAAAGGAGTT 59.240 41.667 0.00 0.00 36.24 3.01
140 155 5.240844 CCTTCACACCGATAAAAAGGAGTTT 59.759 40.000 0.00 0.00 36.24 2.66
141 156 5.682943 TCACACCGATAAAAAGGAGTTTG 57.317 39.130 0.00 0.00 0.00 2.93
142 157 4.023536 TCACACCGATAAAAAGGAGTTTGC 60.024 41.667 0.00 0.00 0.00 3.68
143 158 3.058501 ACACCGATAAAAAGGAGTTTGCG 60.059 43.478 0.00 0.00 0.00 4.85
144 159 3.187637 CACCGATAAAAAGGAGTTTGCGA 59.812 43.478 0.00 0.00 0.00 5.10
145 160 3.187842 ACCGATAAAAAGGAGTTTGCGAC 59.812 43.478 0.00 0.00 0.00 5.19
146 161 3.425758 CCGATAAAAAGGAGTTTGCGACC 60.426 47.826 0.00 0.00 0.00 4.79
147 162 3.435671 CGATAAAAAGGAGTTTGCGACCT 59.564 43.478 0.00 0.00 35.36 3.85
178 193 2.985001 TCTACCATGCACGGGAGAA 58.015 52.632 12.39 0.00 43.47 2.87
382 402 4.103153 ACAATAGTACCTCACCCATCCATG 59.897 45.833 0.00 0.00 0.00 3.66
858 886 2.780065 TCACGCACGTAACTGTAACT 57.220 45.000 0.00 0.00 0.00 2.24
971 1012 1.431243 TGGCAGGGTTCCCATAAAAGT 59.569 47.619 10.73 0.00 0.00 2.66
1032 1073 1.975680 TGGTAGAAAAGCCGGTCTCTT 59.024 47.619 1.90 0.00 0.00 2.85
1033 1074 2.370849 TGGTAGAAAAGCCGGTCTCTTT 59.629 45.455 1.90 0.87 35.47 2.52
1034 1075 2.742589 GGTAGAAAAGCCGGTCTCTTTG 59.257 50.000 1.90 0.00 34.34 2.77
1047 1088 1.416401 TCTCTTTGCGACCTTCACCTT 59.584 47.619 0.00 0.00 0.00 3.50
1094 1485 8.703604 ATAAATATACACACACACACTCAGAC 57.296 34.615 0.00 0.00 0.00 3.51
1095 1486 2.882927 TACACACACACACTCAGACC 57.117 50.000 0.00 0.00 0.00 3.85
1096 1487 1.195115 ACACACACACACTCAGACCT 58.805 50.000 0.00 0.00 0.00 3.85
1097 1488 1.137086 ACACACACACACTCAGACCTC 59.863 52.381 0.00 0.00 0.00 3.85
1098 1489 1.136891 CACACACACACTCAGACCTCA 59.863 52.381 0.00 0.00 0.00 3.86
1099 1490 1.410517 ACACACACACTCAGACCTCAG 59.589 52.381 0.00 0.00 0.00 3.35
1100 1491 1.043816 ACACACACTCAGACCTCAGG 58.956 55.000 0.00 0.00 0.00 3.86
1161 1558 6.398918 TCAAGTAGTGGAAGAGTTAATCTGC 58.601 40.000 0.00 0.00 38.67 4.26
1165 1562 0.301987 GGAAGAGTTAATCTGCGCGC 59.698 55.000 27.26 27.26 38.67 6.86
1168 1565 3.806553 GAGTTAATCTGCGCGCGCG 62.807 63.158 45.73 45.73 45.51 6.86
1259 1656 2.811317 CCTCCTGTTCGTCGCAGC 60.811 66.667 0.00 0.00 32.93 5.25
1603 2024 2.363147 GAGGAGCCCGACCAGAGT 60.363 66.667 0.00 0.00 0.00 3.24
1605 2026 4.459089 GGAGCCCGACCAGAGTGC 62.459 72.222 0.00 0.00 0.00 4.40
1988 2434 2.609427 GCATCCTGCAGATCAGTGTA 57.391 50.000 17.39 0.00 44.26 2.90
1989 2435 2.910199 GCATCCTGCAGATCAGTGTAA 58.090 47.619 17.39 0.00 44.26 2.41
1990 2436 3.474600 GCATCCTGCAGATCAGTGTAAT 58.525 45.455 17.39 0.00 44.26 1.89
1991 2437 3.881688 GCATCCTGCAGATCAGTGTAATT 59.118 43.478 17.39 0.00 44.26 1.40
1992 2438 4.337555 GCATCCTGCAGATCAGTGTAATTT 59.662 41.667 17.39 0.00 44.26 1.82
1993 2439 5.505324 GCATCCTGCAGATCAGTGTAATTTC 60.505 44.000 17.39 0.00 44.26 2.17
1994 2440 5.426689 TCCTGCAGATCAGTGTAATTTCT 57.573 39.130 17.39 0.00 41.25 2.52
1995 2441 5.809001 TCCTGCAGATCAGTGTAATTTCTT 58.191 37.500 17.39 0.00 41.25 2.52
1996 2442 6.240894 TCCTGCAGATCAGTGTAATTTCTTT 58.759 36.000 17.39 0.00 41.25 2.52
1997 2443 6.372659 TCCTGCAGATCAGTGTAATTTCTTTC 59.627 38.462 17.39 0.00 41.25 2.62
1998 2444 6.373774 CCTGCAGATCAGTGTAATTTCTTTCT 59.626 38.462 17.39 0.00 41.25 2.52
1999 2445 7.094463 CCTGCAGATCAGTGTAATTTCTTTCTT 60.094 37.037 17.39 0.00 41.25 2.52
2000 2446 7.587629 TGCAGATCAGTGTAATTTCTTTCTTG 58.412 34.615 0.00 0.00 0.00 3.02
2001 2447 6.525976 GCAGATCAGTGTAATTTCTTTCTTGC 59.474 38.462 0.00 0.00 0.00 4.01
2002 2448 7.587629 CAGATCAGTGTAATTTCTTTCTTGCA 58.412 34.615 0.00 0.00 0.00 4.08
2003 2449 7.536622 CAGATCAGTGTAATTTCTTTCTTGCAC 59.463 37.037 0.00 0.00 37.98 4.57
2004 2450 6.942532 TCAGTGTAATTTCTTTCTTGCACT 57.057 33.333 0.00 1.02 45.33 4.40
2006 2452 5.523369 AGTGTAATTTCTTTCTTGCACTGC 58.477 37.500 5.43 0.00 43.61 4.40
2007 2453 5.300286 AGTGTAATTTCTTTCTTGCACTGCT 59.700 36.000 1.98 0.00 43.61 4.24
2008 2454 5.400485 GTGTAATTTCTTTCTTGCACTGCTG 59.600 40.000 1.98 0.00 35.78 4.41
2009 2455 4.660789 AATTTCTTTCTTGCACTGCTGT 57.339 36.364 1.98 0.00 0.00 4.40
2031 2477 8.802856 GCTGTTTCTTCTTTCTTTCTTTCTTTC 58.197 33.333 0.00 0.00 0.00 2.62
2070 2516 7.064609 GGTTTCTTCTTTCTTTGGAAAACCTTG 59.935 37.037 0.00 0.00 40.41 3.61
2073 2519 5.337578 TCTTTCTTTGGAAAACCTTGTGG 57.662 39.130 0.00 0.00 40.41 4.17
2074 2520 3.535280 TTCTTTGGAAAACCTTGTGGC 57.465 42.857 0.00 0.00 36.63 5.01
2076 2522 1.136110 CTTTGGAAAACCTTGTGGCGT 59.864 47.619 0.00 0.00 36.63 5.68
2078 2524 0.394488 TGGAAAACCTTGTGGCGTGA 60.394 50.000 0.00 0.00 36.63 4.35
2079 2525 0.958822 GGAAAACCTTGTGGCGTGAT 59.041 50.000 0.00 0.00 36.63 3.06
2080 2526 1.339929 GGAAAACCTTGTGGCGTGATT 59.660 47.619 0.00 0.00 36.63 2.57
2081 2527 2.554893 GGAAAACCTTGTGGCGTGATTA 59.445 45.455 0.00 0.00 36.63 1.75
2082 2528 3.192633 GGAAAACCTTGTGGCGTGATTAT 59.807 43.478 0.00 0.00 36.63 1.28
2083 2529 4.396790 GGAAAACCTTGTGGCGTGATTATA 59.603 41.667 0.00 0.00 36.63 0.98
2084 2530 4.957759 AAACCTTGTGGCGTGATTATAC 57.042 40.909 0.00 0.00 36.63 1.47
2085 2531 3.620427 ACCTTGTGGCGTGATTATACA 57.380 42.857 0.00 0.00 36.63 2.29
2086 2532 3.531538 ACCTTGTGGCGTGATTATACAG 58.468 45.455 0.00 0.00 36.63 2.74
2087 2533 3.055385 ACCTTGTGGCGTGATTATACAGT 60.055 43.478 0.00 0.00 36.63 3.55
2100 2546 8.822855 CGTGATTATACAGTATTTGTTTAGGCA 58.177 33.333 0.00 0.00 41.29 4.75
2196 2660 2.114670 GCATGCGCTTAAGGAGGCA 61.115 57.895 9.73 0.09 39.04 4.75
2205 2669 1.136305 CTTAAGGAGGCAACCGATCGA 59.864 52.381 18.66 0.00 34.73 3.59
2206 2670 1.410004 TAAGGAGGCAACCGATCGAT 58.590 50.000 18.66 0.00 34.73 3.59
2207 2671 0.105039 AAGGAGGCAACCGATCGATC 59.895 55.000 18.66 15.68 34.73 3.69
2221 2685 4.230314 GATCGATCGATGAGAAAGGTGA 57.770 45.455 33.86 0.52 34.60 4.02
2222 2686 4.611943 GATCGATCGATGAGAAAGGTGAA 58.388 43.478 33.86 0.03 34.60 3.18
2223 2687 4.450082 TCGATCGATGAGAAAGGTGAAA 57.550 40.909 15.15 0.00 0.00 2.69
2224 2688 4.174009 TCGATCGATGAGAAAGGTGAAAC 58.826 43.478 15.15 0.00 0.00 2.78
2225 2689 4.082190 TCGATCGATGAGAAAGGTGAAACT 60.082 41.667 15.15 0.00 36.74 2.66
2226 2690 4.266502 CGATCGATGAGAAAGGTGAAACTC 59.733 45.833 10.26 0.00 36.74 3.01
2227 2691 4.600692 TCGATGAGAAAGGTGAAACTCA 57.399 40.909 0.00 0.00 42.26 3.41
2228 2692 4.307432 TCGATGAGAAAGGTGAAACTCAC 58.693 43.478 0.00 0.00 46.23 3.51
2250 2714 5.035784 CCGAAATGGTTGTCTTCTTCTTC 57.964 43.478 0.00 0.00 0.00 2.87
2251 2715 4.757149 CCGAAATGGTTGTCTTCTTCTTCT 59.243 41.667 0.00 0.00 0.00 2.85
2252 2716 5.239525 CCGAAATGGTTGTCTTCTTCTTCTT 59.760 40.000 0.00 0.00 0.00 2.52
2253 2717 6.366630 CGAAATGGTTGTCTTCTTCTTCTTC 58.633 40.000 0.00 0.00 0.00 2.87
2254 2718 6.203723 CGAAATGGTTGTCTTCTTCTTCTTCT 59.796 38.462 0.00 0.00 0.00 2.85
2255 2719 7.385205 CGAAATGGTTGTCTTCTTCTTCTTCTA 59.615 37.037 0.00 0.00 0.00 2.10
2256 2720 8.614469 AAATGGTTGTCTTCTTCTTCTTCTAG 57.386 34.615 0.00 0.00 0.00 2.43
2257 2721 5.542779 TGGTTGTCTTCTTCTTCTTCTAGC 58.457 41.667 0.00 0.00 0.00 3.42
2258 2722 5.305644 TGGTTGTCTTCTTCTTCTTCTAGCT 59.694 40.000 0.00 0.00 0.00 3.32
2259 2723 5.637387 GGTTGTCTTCTTCTTCTTCTAGCTG 59.363 44.000 0.00 0.00 0.00 4.24
2260 2724 6.220201 GTTGTCTTCTTCTTCTTCTAGCTGT 58.780 40.000 0.00 0.00 0.00 4.40
2261 2725 7.371936 GTTGTCTTCTTCTTCTTCTAGCTGTA 58.628 38.462 0.00 0.00 0.00 2.74
2262 2726 7.710676 TGTCTTCTTCTTCTTCTAGCTGTAT 57.289 36.000 0.00 0.00 0.00 2.29
2263 2727 8.128322 TGTCTTCTTCTTCTTCTAGCTGTATT 57.872 34.615 0.00 0.00 0.00 1.89
2264 2728 8.589338 TGTCTTCTTCTTCTTCTAGCTGTATTT 58.411 33.333 0.00 0.00 0.00 1.40
2265 2729 9.430623 GTCTTCTTCTTCTTCTAGCTGTATTTT 57.569 33.333 0.00 0.00 0.00 1.82
2266 2730 9.646427 TCTTCTTCTTCTTCTAGCTGTATTTTC 57.354 33.333 0.00 0.00 0.00 2.29
2267 2731 9.651913 CTTCTTCTTCTTCTAGCTGTATTTTCT 57.348 33.333 0.00 0.00 0.00 2.52
2269 2733 9.646427 TCTTCTTCTTCTAGCTGTATTTTCTTC 57.354 33.333 0.00 0.00 0.00 2.87
2270 2734 9.429359 CTTCTTCTTCTAGCTGTATTTTCTTCA 57.571 33.333 0.00 0.00 0.00 3.02
2271 2735 8.994429 TCTTCTTCTAGCTGTATTTTCTTCAG 57.006 34.615 0.00 0.00 0.00 3.02
2272 2736 8.807118 TCTTCTTCTAGCTGTATTTTCTTCAGA 58.193 33.333 0.00 0.00 0.00 3.27
2273 2737 9.429359 CTTCTTCTAGCTGTATTTTCTTCAGAA 57.571 33.333 0.00 0.00 0.00 3.02
2274 2738 9.778741 TTCTTCTAGCTGTATTTTCTTCAGAAA 57.221 29.630 0.00 0.00 41.77 2.52
2275 2739 9.950496 TCTTCTAGCTGTATTTTCTTCAGAAAT 57.050 29.630 0.00 0.00 42.83 2.17
2279 2743 7.880059 AGCTGTATTTTCTTCAGAAATTTGC 57.120 32.000 0.00 4.64 42.83 3.68
2280 2744 7.436118 AGCTGTATTTTCTTCAGAAATTTGCA 58.564 30.769 0.00 3.89 42.83 4.08
2281 2745 7.597743 AGCTGTATTTTCTTCAGAAATTTGCAG 59.402 33.333 17.41 17.41 42.83 4.41
2282 2746 7.383300 GCTGTATTTTCTTCAGAAATTTGCAGT 59.617 33.333 19.99 0.00 42.83 4.40
2283 2747 8.578308 TGTATTTTCTTCAGAAATTTGCAGTG 57.422 30.769 0.00 0.00 42.83 3.66
2284 2748 5.971895 TTTTCTTCAGAAATTTGCAGTGC 57.028 34.783 8.58 8.58 42.83 4.40
2285 2749 4.652421 TTCTTCAGAAATTTGCAGTGCA 57.348 36.364 15.37 15.37 36.47 4.57
2286 2750 3.968649 TCTTCAGAAATTTGCAGTGCAC 58.031 40.909 19.58 9.40 38.71 4.57
2287 2751 2.798976 TCAGAAATTTGCAGTGCACC 57.201 45.000 19.58 4.97 38.71 5.01
2288 2752 2.309613 TCAGAAATTTGCAGTGCACCT 58.690 42.857 19.58 4.88 38.71 4.00
2289 2753 2.694628 TCAGAAATTTGCAGTGCACCTT 59.305 40.909 19.58 11.41 38.71 3.50
2290 2754 3.888323 TCAGAAATTTGCAGTGCACCTTA 59.112 39.130 19.58 0.00 38.71 2.69
2291 2755 3.983344 CAGAAATTTGCAGTGCACCTTAC 59.017 43.478 19.58 9.80 38.71 2.34
2292 2756 3.005791 AGAAATTTGCAGTGCACCTTACC 59.994 43.478 19.58 9.56 38.71 2.85
2293 2757 2.292828 ATTTGCAGTGCACCTTACCT 57.707 45.000 19.58 0.00 38.71 3.08
2294 2758 1.604604 TTTGCAGTGCACCTTACCTC 58.395 50.000 19.58 0.00 38.71 3.85
2295 2759 0.602638 TTGCAGTGCACCTTACCTCG 60.603 55.000 19.58 0.00 38.71 4.63
2296 2760 1.004918 GCAGTGCACCTTACCTCGT 60.005 57.895 14.63 0.00 0.00 4.18
2297 2761 0.602905 GCAGTGCACCTTACCTCGTT 60.603 55.000 14.63 0.00 0.00 3.85
2298 2762 1.878953 CAGTGCACCTTACCTCGTTT 58.121 50.000 14.63 0.00 0.00 3.60
2299 2763 2.868839 GCAGTGCACCTTACCTCGTTTA 60.869 50.000 14.63 0.00 0.00 2.01
2300 2764 3.596214 CAGTGCACCTTACCTCGTTTAT 58.404 45.455 14.63 0.00 0.00 1.40
2301 2765 3.370978 CAGTGCACCTTACCTCGTTTATG 59.629 47.826 14.63 0.00 0.00 1.90
2302 2766 3.007614 AGTGCACCTTACCTCGTTTATGT 59.992 43.478 14.63 0.00 0.00 2.29
2303 2767 3.749609 GTGCACCTTACCTCGTTTATGTT 59.250 43.478 5.22 0.00 0.00 2.71
2304 2768 3.998341 TGCACCTTACCTCGTTTATGTTC 59.002 43.478 0.00 0.00 0.00 3.18
2305 2769 3.998341 GCACCTTACCTCGTTTATGTTCA 59.002 43.478 0.00 0.00 0.00 3.18
2306 2770 4.634443 GCACCTTACCTCGTTTATGTTCAT 59.366 41.667 0.00 0.00 0.00 2.57
2307 2771 5.447279 GCACCTTACCTCGTTTATGTTCATG 60.447 44.000 0.00 0.00 0.00 3.07
2308 2772 5.064707 CACCTTACCTCGTTTATGTTCATGG 59.935 44.000 0.00 0.00 0.00 3.66
2309 2773 5.046159 ACCTTACCTCGTTTATGTTCATGGA 60.046 40.000 0.00 0.00 0.00 3.41
2310 2774 5.523916 CCTTACCTCGTTTATGTTCATGGAG 59.476 44.000 0.00 0.00 0.00 3.86
2311 2775 3.270877 ACCTCGTTTATGTTCATGGAGC 58.729 45.455 0.00 0.00 0.00 4.70
2312 2776 2.285220 CCTCGTTTATGTTCATGGAGCG 59.715 50.000 0.00 0.00 0.00 5.03
2313 2777 3.186909 CTCGTTTATGTTCATGGAGCGA 58.813 45.455 0.00 3.54 0.00 4.93
2314 2778 3.792401 TCGTTTATGTTCATGGAGCGAT 58.208 40.909 0.00 0.00 0.00 4.58
2315 2779 4.188462 TCGTTTATGTTCATGGAGCGATT 58.812 39.130 0.00 0.00 0.00 3.34
2316 2780 4.270084 TCGTTTATGTTCATGGAGCGATTC 59.730 41.667 0.00 0.00 0.00 2.52
2317 2781 4.271049 CGTTTATGTTCATGGAGCGATTCT 59.729 41.667 0.00 0.00 0.00 2.40
2318 2782 5.220662 CGTTTATGTTCATGGAGCGATTCTT 60.221 40.000 0.00 0.00 0.00 2.52
2319 2783 5.739752 TTATGTTCATGGAGCGATTCTTG 57.260 39.130 0.00 0.00 0.00 3.02
2320 2784 3.057969 TGTTCATGGAGCGATTCTTGT 57.942 42.857 0.00 0.00 0.00 3.16
2321 2785 4.200838 TGTTCATGGAGCGATTCTTGTA 57.799 40.909 0.00 0.00 0.00 2.41
2322 2786 4.183865 TGTTCATGGAGCGATTCTTGTAG 58.816 43.478 0.00 0.00 0.00 2.74
2323 2787 2.826428 TCATGGAGCGATTCTTGTAGC 58.174 47.619 0.00 0.00 0.00 3.58
2324 2788 2.168313 TCATGGAGCGATTCTTGTAGCA 59.832 45.455 0.00 0.00 0.00 3.49
2325 2789 2.299993 TGGAGCGATTCTTGTAGCAG 57.700 50.000 0.00 0.00 0.00 4.24
2326 2790 1.134699 TGGAGCGATTCTTGTAGCAGG 60.135 52.381 0.00 0.00 0.00 4.85
2327 2791 1.137086 GGAGCGATTCTTGTAGCAGGA 59.863 52.381 0.00 0.00 0.00 3.86
2328 2792 2.468831 GAGCGATTCTTGTAGCAGGAG 58.531 52.381 0.00 0.00 0.00 3.69
2329 2793 2.099921 GAGCGATTCTTGTAGCAGGAGA 59.900 50.000 0.00 0.00 0.00 3.71
2330 2794 2.100584 AGCGATTCTTGTAGCAGGAGAG 59.899 50.000 0.00 0.00 0.00 3.20
2331 2795 2.801342 GCGATTCTTGTAGCAGGAGAGG 60.801 54.545 0.00 0.00 0.00 3.69
2332 2796 2.690497 CGATTCTTGTAGCAGGAGAGGA 59.310 50.000 0.00 0.00 0.00 3.71
2333 2797 3.243367 CGATTCTTGTAGCAGGAGAGGAG 60.243 52.174 0.00 0.00 0.00 3.69
2334 2798 3.458044 TTCTTGTAGCAGGAGAGGAGA 57.542 47.619 0.00 0.00 0.00 3.71
2335 2799 3.011566 TCTTGTAGCAGGAGAGGAGAG 57.988 52.381 0.00 0.00 0.00 3.20
2336 2800 2.031120 CTTGTAGCAGGAGAGGAGAGG 58.969 57.143 0.00 0.00 0.00 3.69
2337 2801 1.299939 TGTAGCAGGAGAGGAGAGGA 58.700 55.000 0.00 0.00 0.00 3.71
2397 2864 5.107065 CCGTGTTTTCTTCTTGCCTAGTTAG 60.107 44.000 0.00 0.00 0.00 2.34
2413 2880 5.127845 CCTAGTTAGCTGAATGGAGACTTGA 59.872 44.000 0.00 0.00 0.00 3.02
2446 2913 3.281341 TCATGCACGACAAAACCAATC 57.719 42.857 0.00 0.00 0.00 2.67
2483 2950 0.246635 TCTGGAGGTTCAGTAAGCGC 59.753 55.000 0.00 0.00 38.16 5.92
2526 2999 3.898005 TTTTTGCAAGAAAGCGTTTCG 57.102 38.095 0.00 0.00 44.29 3.46
2598 3071 3.769300 AGAAGAAGAAGAAGAGGAGGAGC 59.231 47.826 0.00 0.00 0.00 4.70
2632 3114 4.578928 AGTTAGTTCGTCAGGCACAAAAAT 59.421 37.500 0.00 0.00 0.00 1.82
2658 3141 4.012895 CACGCCCACAAGTGTCGC 62.013 66.667 10.54 5.94 33.97 5.19
2659 3142 4.235762 ACGCCCACAAGTGTCGCT 62.236 61.111 10.54 0.00 0.00 4.93
2674 3157 0.811281 TCGCTGTCATCACTCATCGT 59.189 50.000 0.00 0.00 0.00 3.73
2734 3224 7.039011 TCCATAGGAATGAGTGTATGTACCATC 60.039 40.741 0.00 0.00 34.84 3.51
2762 3252 6.408035 TGTGAGAGAGACGACTAGACTATTT 58.592 40.000 0.00 0.00 0.00 1.40
2868 3363 1.132643 AGTCCGGACGAAGAATTCTCG 59.867 52.381 28.26 19.20 44.75 4.04
2928 3424 4.142049 CCAGAGACCAGAGGAATAAGACAC 60.142 50.000 0.00 0.00 0.00 3.67
2945 3441 4.392047 AGACACAGAAAAGATCATGCACA 58.608 39.130 0.00 0.00 0.00 4.57
2972 3468 1.691196 TTGGCTCTTGGAAACCAGTG 58.309 50.000 0.00 0.00 33.81 3.66
2973 3469 0.823356 TGGCTCTTGGAAACCAGTGC 60.823 55.000 0.00 0.00 33.81 4.40
2974 3470 1.527433 GGCTCTTGGAAACCAGTGCC 61.527 60.000 12.11 12.11 35.75 5.01
2989 3485 0.470766 GTGCCCCGGGTGTATGAATA 59.529 55.000 21.85 0.00 0.00 1.75
3025 3521 7.698836 AAAAATTATATGCACGCAGATTTCC 57.301 32.000 4.25 0.00 0.00 3.13
3032 3528 2.492881 TGCACGCAGATTTCCATGAAAT 59.507 40.909 1.87 1.87 43.77 2.17
3047 3543 5.070981 TCCATGAAATGCCCAAACTTGTTTA 59.929 36.000 0.00 0.00 44.97 2.01
3057 3553 4.298332 CCAAACTTGTTTATGCACAGGAC 58.702 43.478 0.00 0.00 0.00 3.85
3059 3555 5.451798 CCAAACTTGTTTATGCACAGGACTT 60.452 40.000 0.00 0.00 0.00 3.01
3068 3564 7.880713 TGTTTATGCACAGGACTTATTTACTCA 59.119 33.333 0.00 0.00 0.00 3.41
3069 3565 7.843490 TTATGCACAGGACTTATTTACTCAC 57.157 36.000 0.00 0.00 0.00 3.51
3070 3566 4.242475 TGCACAGGACTTATTTACTCACG 58.758 43.478 0.00 0.00 0.00 4.35
3071 3567 4.243270 GCACAGGACTTATTTACTCACGT 58.757 43.478 0.00 0.00 0.00 4.49
3072 3568 4.091509 GCACAGGACTTATTTACTCACGTG 59.908 45.833 9.94 9.94 0.00 4.49
3073 3569 5.466819 CACAGGACTTATTTACTCACGTGA 58.533 41.667 18.88 18.88 0.00 4.35
3075 3571 5.475909 ACAGGACTTATTTACTCACGTGAGA 59.524 40.000 43.55 26.73 44.74 3.27
3076 3572 5.800941 CAGGACTTATTTACTCACGTGAGAC 59.199 44.000 43.55 23.10 44.74 3.36
3077 3573 5.100943 GGACTTATTTACTCACGTGAGACC 58.899 45.833 43.55 26.51 44.74 3.85
3078 3574 5.105837 GGACTTATTTACTCACGTGAGACCT 60.106 44.000 43.55 27.70 44.74 3.85
3079 3575 5.710984 ACTTATTTACTCACGTGAGACCTG 58.289 41.667 43.55 27.73 44.74 4.00
3080 3576 3.594603 ATTTACTCACGTGAGACCTGG 57.405 47.619 43.55 23.04 44.74 4.45
3081 3577 1.991121 TTACTCACGTGAGACCTGGT 58.009 50.000 43.55 26.99 44.74 4.00
3082 3578 1.531423 TACTCACGTGAGACCTGGTC 58.469 55.000 43.55 19.20 44.74 4.02
3083 3579 0.178987 ACTCACGTGAGACCTGGTCT 60.179 55.000 43.55 28.70 46.42 3.85
3096 3592 6.882768 AGACCTGGTCTCATAGAATTCTTT 57.117 37.500 23.49 2.41 38.71 2.52
3097 3593 7.264294 AGACCTGGTCTCATAGAATTCTTTT 57.736 36.000 23.49 0.00 38.71 2.27
3098 3594 7.334858 AGACCTGGTCTCATAGAATTCTTTTC 58.665 38.462 23.49 0.00 38.71 2.29
3099 3595 6.418946 ACCTGGTCTCATAGAATTCTTTTCC 58.581 40.000 14.36 8.65 0.00 3.13
3100 3596 5.525378 CCTGGTCTCATAGAATTCTTTTCCG 59.475 44.000 14.36 0.00 0.00 4.30
3101 3597 6.049955 TGGTCTCATAGAATTCTTTTCCGT 57.950 37.500 14.36 0.00 0.00 4.69
3102 3598 6.472887 TGGTCTCATAGAATTCTTTTCCGTT 58.527 36.000 14.36 0.00 0.00 4.44
3103 3599 6.594159 TGGTCTCATAGAATTCTTTTCCGTTC 59.406 38.462 14.36 0.00 0.00 3.95
3104 3600 6.819146 GGTCTCATAGAATTCTTTTCCGTTCT 59.181 38.462 14.36 0.00 35.32 3.01
3105 3601 7.201565 GGTCTCATAGAATTCTTTTCCGTTCTG 60.202 40.741 14.36 0.00 33.36 3.02
3106 3602 6.818644 TCTCATAGAATTCTTTTCCGTTCTGG 59.181 38.462 14.36 0.00 40.09 3.86
3119 3615 5.808366 TCCGTTCTGGATATTTATCAGCT 57.192 39.130 0.38 0.00 43.74 4.24
3120 3616 5.784177 TCCGTTCTGGATATTTATCAGCTC 58.216 41.667 0.38 0.00 43.74 4.09
3121 3617 5.304357 TCCGTTCTGGATATTTATCAGCTCA 59.696 40.000 0.38 0.00 43.74 4.26
3122 3618 5.991606 CCGTTCTGGATATTTATCAGCTCAA 59.008 40.000 0.38 0.00 42.00 3.02
3123 3619 6.073548 CCGTTCTGGATATTTATCAGCTCAAC 60.074 42.308 0.38 0.00 42.00 3.18
3124 3620 6.479990 CGTTCTGGATATTTATCAGCTCAACA 59.520 38.462 0.38 0.00 34.40 3.33
3125 3621 7.011389 CGTTCTGGATATTTATCAGCTCAACAA 59.989 37.037 0.38 0.00 34.40 2.83
3126 3622 8.677300 GTTCTGGATATTTATCAGCTCAACAAA 58.323 33.333 0.38 0.00 34.40 2.83
3127 3623 8.213518 TCTGGATATTTATCAGCTCAACAAAC 57.786 34.615 0.38 0.00 34.40 2.93
3128 3624 7.828717 TCTGGATATTTATCAGCTCAACAAACA 59.171 33.333 0.38 0.00 34.40 2.83
3129 3625 8.523915 TGGATATTTATCAGCTCAACAAACAT 57.476 30.769 0.38 0.00 34.40 2.71
3130 3626 8.407832 TGGATATTTATCAGCTCAACAAACATG 58.592 33.333 0.00 0.00 34.40 3.21
3131 3627 8.408601 GGATATTTATCAGCTCAACAAACATGT 58.591 33.333 0.00 0.00 34.40 3.21
3134 3630 7.977789 TTTATCAGCTCAACAAACATGTAGA 57.022 32.000 0.00 0.00 0.00 2.59
3135 3631 8.565896 TTTATCAGCTCAACAAACATGTAGAT 57.434 30.769 0.00 0.00 0.00 1.98
3136 3632 8.565896 TTATCAGCTCAACAAACATGTAGATT 57.434 30.769 0.00 0.00 0.00 2.40
3137 3633 9.665719 TTATCAGCTCAACAAACATGTAGATTA 57.334 29.630 0.00 0.00 0.00 1.75
3138 3634 7.364522 TCAGCTCAACAAACATGTAGATTAC 57.635 36.000 0.00 0.00 0.00 1.89
3139 3635 7.161404 TCAGCTCAACAAACATGTAGATTACT 58.839 34.615 0.00 0.00 0.00 2.24
3140 3636 8.311109 TCAGCTCAACAAACATGTAGATTACTA 58.689 33.333 0.00 0.00 0.00 1.82
3141 3637 8.935844 CAGCTCAACAAACATGTAGATTACTAA 58.064 33.333 0.00 0.00 0.00 2.24
3142 3638 9.502091 AGCTCAACAAACATGTAGATTACTAAA 57.498 29.630 0.00 0.00 0.00 1.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 0.235144 AGTAGTAGTAGATGCGCGCG 59.765 55.000 28.44 28.44 0.00 6.86
36 37 2.412585 GGTAGTAGTAGTAGATGCGCGC 60.413 54.545 27.26 27.26 0.00 6.86
37 38 3.065655 AGGTAGTAGTAGTAGATGCGCG 58.934 50.000 0.00 0.00 0.00 6.86
40 41 7.622713 TGGAGATAGGTAGTAGTAGTAGATGC 58.377 42.308 0.00 0.00 0.00 3.91
41 42 9.826574 GATGGAGATAGGTAGTAGTAGTAGATG 57.173 40.741 0.00 0.00 0.00 2.90
42 43 8.995577 GGATGGAGATAGGTAGTAGTAGTAGAT 58.004 40.741 0.00 0.00 0.00 1.98
43 44 7.402650 GGGATGGAGATAGGTAGTAGTAGTAGA 59.597 44.444 0.00 0.00 0.00 2.59
46 60 5.253564 GGGGATGGAGATAGGTAGTAGTAGT 59.746 48.000 0.00 0.00 0.00 2.73
71 85 8.798402 AGAGAGAGTATATTAGCTTAAACGCAT 58.202 33.333 0.00 0.00 0.00 4.73
72 86 8.167605 AGAGAGAGTATATTAGCTTAAACGCA 57.832 34.615 0.00 0.00 0.00 5.24
73 87 8.508875 AGAGAGAGAGTATATTAGCTTAAACGC 58.491 37.037 0.00 0.00 0.00 4.84
90 105 3.576118 AGATCGGAGAGAGAGAGAGAGAG 59.424 52.174 0.00 0.00 43.63 3.20
107 122 0.523546 CGGTGTGAAGGTCGAGATCG 60.524 60.000 0.00 0.00 41.45 3.69
108 123 0.809385 TCGGTGTGAAGGTCGAGATC 59.191 55.000 0.00 0.00 0.00 2.75
109 124 1.475403 ATCGGTGTGAAGGTCGAGAT 58.525 50.000 0.00 0.00 35.07 2.75
110 125 2.118313 TATCGGTGTGAAGGTCGAGA 57.882 50.000 0.00 0.00 35.07 4.04
111 126 2.933495 TTATCGGTGTGAAGGTCGAG 57.067 50.000 0.00 0.00 35.07 4.04
112 127 3.663995 TTTTATCGGTGTGAAGGTCGA 57.336 42.857 0.00 0.00 36.07 4.20
113 128 3.124636 CCTTTTTATCGGTGTGAAGGTCG 59.875 47.826 0.00 0.00 31.32 4.79
114 129 4.320870 TCCTTTTTATCGGTGTGAAGGTC 58.679 43.478 5.91 0.00 36.07 3.85
115 130 4.202430 ACTCCTTTTTATCGGTGTGAAGGT 60.202 41.667 5.91 0.00 36.07 3.50
117 132 5.941948 AACTCCTTTTTATCGGTGTGAAG 57.058 39.130 0.00 0.00 0.00 3.02
118 133 5.506649 GCAAACTCCTTTTTATCGGTGTGAA 60.507 40.000 0.00 0.00 0.00 3.18
121 136 3.058501 CGCAAACTCCTTTTTATCGGTGT 60.059 43.478 0.00 0.00 0.00 4.16
123 138 3.187842 GTCGCAAACTCCTTTTTATCGGT 59.812 43.478 0.00 0.00 0.00 4.69
125 140 3.435671 AGGTCGCAAACTCCTTTTTATCG 59.564 43.478 0.00 0.00 0.00 2.92
126 141 4.454504 TCAGGTCGCAAACTCCTTTTTATC 59.545 41.667 0.00 0.00 0.00 1.75
127 142 4.394729 TCAGGTCGCAAACTCCTTTTTAT 58.605 39.130 0.00 0.00 0.00 1.40
128 143 3.811083 TCAGGTCGCAAACTCCTTTTTA 58.189 40.909 0.00 0.00 0.00 1.52
129 144 2.618709 CTCAGGTCGCAAACTCCTTTTT 59.381 45.455 0.00 0.00 0.00 1.94
130 145 2.158813 TCTCAGGTCGCAAACTCCTTTT 60.159 45.455 0.00 0.00 0.00 2.27
131 146 1.416401 TCTCAGGTCGCAAACTCCTTT 59.584 47.619 0.00 0.00 0.00 3.11
132 147 1.048601 TCTCAGGTCGCAAACTCCTT 58.951 50.000 0.00 0.00 0.00 3.36
133 148 1.048601 TTCTCAGGTCGCAAACTCCT 58.951 50.000 0.00 0.00 0.00 3.69
134 149 1.878953 TTTCTCAGGTCGCAAACTCC 58.121 50.000 0.00 0.00 0.00 3.85
135 150 3.131396 TCTTTTCTCAGGTCGCAAACTC 58.869 45.455 0.00 0.00 0.00 3.01
136 151 3.134458 CTCTTTTCTCAGGTCGCAAACT 58.866 45.455 0.00 0.00 0.00 2.66
137 152 3.131396 TCTCTTTTCTCAGGTCGCAAAC 58.869 45.455 0.00 0.00 0.00 2.93
138 153 3.469008 TCTCTTTTCTCAGGTCGCAAA 57.531 42.857 0.00 0.00 0.00 3.68
139 154 3.685139 ATCTCTTTTCTCAGGTCGCAA 57.315 42.857 0.00 0.00 0.00 4.85
140 155 3.259374 AGAATCTCTTTTCTCAGGTCGCA 59.741 43.478 0.00 0.00 29.99 5.10
141 156 3.855858 AGAATCTCTTTTCTCAGGTCGC 58.144 45.455 0.00 0.00 29.99 5.19
142 157 5.105716 TGGTAGAATCTCTTTTCTCAGGTCG 60.106 44.000 0.00 0.00 37.20 4.79
143 158 6.287589 TGGTAGAATCTCTTTTCTCAGGTC 57.712 41.667 0.00 0.00 37.20 3.85
144 159 6.648192 CATGGTAGAATCTCTTTTCTCAGGT 58.352 40.000 0.00 0.00 37.20 4.00
145 160 5.526846 GCATGGTAGAATCTCTTTTCTCAGG 59.473 44.000 0.00 0.00 37.20 3.86
146 161 6.036953 GTGCATGGTAGAATCTCTTTTCTCAG 59.963 42.308 0.00 0.00 37.20 3.35
147 162 5.877012 GTGCATGGTAGAATCTCTTTTCTCA 59.123 40.000 0.00 0.00 37.20 3.27
315 332 6.156256 AGAGGTTGCTAGTGGTCAATGTATAA 59.844 38.462 0.00 0.00 0.00 0.98
316 333 5.661312 AGAGGTTGCTAGTGGTCAATGTATA 59.339 40.000 0.00 0.00 0.00 1.47
382 402 7.493320 TGAAGCTTGGAAATCATATGAAAATGC 59.507 33.333 9.99 8.11 0.00 3.56
971 1012 4.453478 GCATGCATAGCTGAGCTGTTTATA 59.547 41.667 18.79 0.00 40.10 0.98
1032 1073 1.072505 GGGAAGGTGAAGGTCGCAA 59.927 57.895 0.00 0.00 0.00 4.85
1033 1074 1.415672 AAGGGAAGGTGAAGGTCGCA 61.416 55.000 0.00 0.00 0.00 5.10
1034 1075 0.955919 CAAGGGAAGGTGAAGGTCGC 60.956 60.000 0.00 0.00 0.00 5.19
1047 1088 0.466543 ACACGCAACTACACAAGGGA 59.533 50.000 0.00 0.00 0.00 4.20
1094 1485 1.281867 TGTAACCATTGAGGCCTGAGG 59.718 52.381 12.00 9.10 43.14 3.86
1095 1486 2.237143 TCTGTAACCATTGAGGCCTGAG 59.763 50.000 12.00 0.00 43.14 3.35
1096 1487 2.265367 TCTGTAACCATTGAGGCCTGA 58.735 47.619 12.00 0.00 43.14 3.86
1097 1488 2.787473 TCTGTAACCATTGAGGCCTG 57.213 50.000 12.00 0.00 43.14 4.85
1098 1489 3.421844 GTTTCTGTAACCATTGAGGCCT 58.578 45.455 3.86 3.86 43.14 5.19
1099 1490 3.850122 GTTTCTGTAACCATTGAGGCC 57.150 47.619 0.00 0.00 43.14 5.19
1128 1519 6.061022 TCTTCCACTACTTGATTATGGCAA 57.939 37.500 0.00 0.00 0.00 4.52
1130 1521 5.675538 ACTCTTCCACTACTTGATTATGGC 58.324 41.667 0.00 0.00 0.00 4.40
1169 1566 3.664025 TTGCGCCTCCCATGAGTCG 62.664 63.158 4.18 0.00 42.60 4.18
1170 1567 1.817099 CTTGCGCCTCCCATGAGTC 60.817 63.158 4.18 0.00 36.86 3.36
1259 1656 1.103803 TCTTGTAGGAGTAGCCGCTG 58.896 55.000 2.16 0.00 43.43 5.18
1597 2018 4.988598 AACCACGGCGCACTCTGG 62.989 66.667 10.83 9.68 0.00 3.86
1599 2020 3.923864 TGAACCACGGCGCACTCT 61.924 61.111 10.83 0.00 0.00 3.24
1600 2021 3.712881 GTGAACCACGGCGCACTC 61.713 66.667 10.83 0.00 0.00 3.51
1624 2066 2.912025 CGGCCCCACTTGTTGCTT 60.912 61.111 0.00 0.00 0.00 3.91
1915 2357 4.063967 TCCCTGCTGCACGTACGG 62.064 66.667 21.06 9.73 0.00 4.02
1927 2369 5.126067 CAAGATAATTACACCCTGTCCCTG 58.874 45.833 0.00 0.00 0.00 4.45
1928 2370 4.788617 ACAAGATAATTACACCCTGTCCCT 59.211 41.667 0.00 0.00 0.00 4.20
1981 2427 6.942532 AGTGCAAGAAAGAAATTACACTGA 57.057 33.333 0.00 0.00 35.89 3.41
1988 2434 4.660789 ACAGCAGTGCAAGAAAGAAATT 57.339 36.364 19.20 0.00 0.00 1.82
1989 2435 4.660789 AACAGCAGTGCAAGAAAGAAAT 57.339 36.364 19.20 0.00 0.00 2.17
1990 2436 4.158394 AGAAACAGCAGTGCAAGAAAGAAA 59.842 37.500 19.20 0.00 0.00 2.52
1991 2437 3.696051 AGAAACAGCAGTGCAAGAAAGAA 59.304 39.130 19.20 0.00 0.00 2.52
1992 2438 3.282021 AGAAACAGCAGTGCAAGAAAGA 58.718 40.909 19.20 0.00 0.00 2.52
1993 2439 3.705043 AGAAACAGCAGTGCAAGAAAG 57.295 42.857 19.20 2.16 0.00 2.62
1994 2440 3.696051 AGAAGAAACAGCAGTGCAAGAAA 59.304 39.130 19.20 0.00 0.00 2.52
1995 2441 3.282021 AGAAGAAACAGCAGTGCAAGAA 58.718 40.909 19.20 0.00 0.00 2.52
1996 2442 2.923121 AGAAGAAACAGCAGTGCAAGA 58.077 42.857 19.20 0.00 0.00 3.02
1997 2443 3.705043 AAGAAGAAACAGCAGTGCAAG 57.295 42.857 19.20 11.98 0.00 4.01
1998 2444 3.696051 AGAAAGAAGAAACAGCAGTGCAA 59.304 39.130 19.20 0.00 0.00 4.08
1999 2445 3.282021 AGAAAGAAGAAACAGCAGTGCA 58.718 40.909 19.20 0.00 0.00 4.57
2000 2446 3.978718 AGAAAGAAGAAACAGCAGTGC 57.021 42.857 7.13 7.13 0.00 4.40
2001 2447 6.129053 AGAAAGAAAGAAGAAACAGCAGTG 57.871 37.500 0.00 0.00 0.00 3.66
2002 2448 6.765915 AAGAAAGAAAGAAGAAACAGCAGT 57.234 33.333 0.00 0.00 0.00 4.40
2003 2449 7.479150 AGAAAGAAAGAAAGAAGAAACAGCAG 58.521 34.615 0.00 0.00 0.00 4.24
2004 2450 7.396540 AGAAAGAAAGAAAGAAGAAACAGCA 57.603 32.000 0.00 0.00 0.00 4.41
2005 2451 8.694975 AAAGAAAGAAAGAAAGAAGAAACAGC 57.305 30.769 0.00 0.00 0.00 4.40
2034 2480 9.730420 CAAAGAAAGAAGAAACCTTATCGAAAA 57.270 29.630 0.00 0.00 0.00 2.29
2035 2481 8.349983 CCAAAGAAAGAAGAAACCTTATCGAAA 58.650 33.333 0.00 0.00 0.00 3.46
2036 2482 7.717875 TCCAAAGAAAGAAGAAACCTTATCGAA 59.282 33.333 0.00 0.00 0.00 3.71
2037 2483 7.221450 TCCAAAGAAAGAAGAAACCTTATCGA 58.779 34.615 0.00 0.00 0.00 3.59
2038 2484 7.435068 TCCAAAGAAAGAAGAAACCTTATCG 57.565 36.000 0.00 0.00 0.00 2.92
2040 2486 9.817809 GTTTTCCAAAGAAAGAAGAAACCTTAT 57.182 29.630 0.00 0.00 42.78 1.73
2041 2487 8.255206 GGTTTTCCAAAGAAAGAAGAAACCTTA 58.745 33.333 7.26 0.00 42.78 2.69
2042 2488 7.038302 AGGTTTTCCAAAGAAAGAAGAAACCTT 60.038 33.333 10.46 0.00 40.44 3.50
2043 2489 6.440647 AGGTTTTCCAAAGAAAGAAGAAACCT 59.559 34.615 10.46 10.46 42.78 3.50
2044 2490 6.640518 AGGTTTTCCAAAGAAAGAAGAAACC 58.359 36.000 6.57 6.57 42.78 3.27
2045 2491 7.602644 ACAAGGTTTTCCAAAGAAAGAAGAAAC 59.397 33.333 0.00 0.00 42.78 2.78
2046 2492 7.602265 CACAAGGTTTTCCAAAGAAAGAAGAAA 59.398 33.333 0.00 0.00 42.78 2.52
2070 2516 6.598753 ACAAATACTGTATAATCACGCCAC 57.401 37.500 0.00 0.00 36.10 5.01
2073 2519 7.797123 GCCTAAACAAATACTGTATAATCACGC 59.203 37.037 0.00 0.00 37.23 5.34
2074 2520 8.822855 TGCCTAAACAAATACTGTATAATCACG 58.177 33.333 0.00 0.00 37.23 4.35
2079 2525 9.337396 CCTCATGCCTAAACAAATACTGTATAA 57.663 33.333 0.00 0.00 37.23 0.98
2080 2526 8.491134 ACCTCATGCCTAAACAAATACTGTATA 58.509 33.333 0.00 0.00 37.23 1.47
2081 2527 7.346471 ACCTCATGCCTAAACAAATACTGTAT 58.654 34.615 0.00 0.00 37.23 2.29
2082 2528 6.717289 ACCTCATGCCTAAACAAATACTGTA 58.283 36.000 0.00 0.00 37.23 2.74
2083 2529 5.570320 ACCTCATGCCTAAACAAATACTGT 58.430 37.500 0.00 0.00 41.27 3.55
2084 2530 5.882557 AGACCTCATGCCTAAACAAATACTG 59.117 40.000 0.00 0.00 0.00 2.74
2085 2531 5.882557 CAGACCTCATGCCTAAACAAATACT 59.117 40.000 0.00 0.00 0.00 2.12
2086 2532 5.449177 GCAGACCTCATGCCTAAACAAATAC 60.449 44.000 0.00 0.00 37.73 1.89
2087 2533 4.640201 GCAGACCTCATGCCTAAACAAATA 59.360 41.667 0.00 0.00 37.73 1.40
2100 2546 4.340381 GCTTAATTGATTGGCAGACCTCAT 59.660 41.667 0.00 0.00 36.63 2.90
2205 2669 4.932200 GTGAGTTTCACCTTTCTCATCGAT 59.068 41.667 0.00 0.00 41.37 3.59
2206 2670 4.307432 GTGAGTTTCACCTTTCTCATCGA 58.693 43.478 0.00 0.00 41.37 3.59
2207 2671 4.653806 GTGAGTTTCACCTTTCTCATCG 57.346 45.455 0.00 0.00 41.37 3.84
2228 2692 4.757149 AGAAGAAGAAGACAACCATTTCGG 59.243 41.667 0.00 0.00 42.50 4.30
2229 2693 5.931441 AGAAGAAGAAGACAACCATTTCG 57.069 39.130 0.00 0.00 0.00 3.46
2230 2694 7.503521 AGAAGAAGAAGAAGACAACCATTTC 57.496 36.000 0.00 0.00 0.00 2.17
2231 2695 7.174080 GCTAGAAGAAGAAGAAGACAACCATTT 59.826 37.037 0.00 0.00 0.00 2.32
2232 2696 6.652900 GCTAGAAGAAGAAGAAGACAACCATT 59.347 38.462 0.00 0.00 0.00 3.16
2233 2697 6.013812 AGCTAGAAGAAGAAGAAGACAACCAT 60.014 38.462 0.00 0.00 0.00 3.55
2234 2698 5.305644 AGCTAGAAGAAGAAGAAGACAACCA 59.694 40.000 0.00 0.00 0.00 3.67
2235 2699 5.637387 CAGCTAGAAGAAGAAGAAGACAACC 59.363 44.000 0.00 0.00 0.00 3.77
2236 2700 6.220201 ACAGCTAGAAGAAGAAGAAGACAAC 58.780 40.000 0.00 0.00 0.00 3.32
2237 2701 6.412362 ACAGCTAGAAGAAGAAGAAGACAA 57.588 37.500 0.00 0.00 0.00 3.18
2238 2702 7.710676 ATACAGCTAGAAGAAGAAGAAGACA 57.289 36.000 0.00 0.00 0.00 3.41
2239 2703 8.996024 AAATACAGCTAGAAGAAGAAGAAGAC 57.004 34.615 0.00 0.00 0.00 3.01
2240 2704 9.646427 GAAAATACAGCTAGAAGAAGAAGAAGA 57.354 33.333 0.00 0.00 0.00 2.87
2241 2705 9.651913 AGAAAATACAGCTAGAAGAAGAAGAAG 57.348 33.333 0.00 0.00 0.00 2.85
2243 2707 9.646427 GAAGAAAATACAGCTAGAAGAAGAAGA 57.354 33.333 0.00 0.00 0.00 2.87
2244 2708 9.429359 TGAAGAAAATACAGCTAGAAGAAGAAG 57.571 33.333 0.00 0.00 0.00 2.85
2245 2709 9.429359 CTGAAGAAAATACAGCTAGAAGAAGAA 57.571 33.333 0.00 0.00 0.00 2.52
2246 2710 8.807118 TCTGAAGAAAATACAGCTAGAAGAAGA 58.193 33.333 0.00 0.00 0.00 2.87
2247 2711 8.994429 TCTGAAGAAAATACAGCTAGAAGAAG 57.006 34.615 0.00 0.00 0.00 2.85
2248 2712 9.778741 TTTCTGAAGAAAATACAGCTAGAAGAA 57.221 29.630 3.00 0.00 40.68 2.52
2249 2713 9.950496 ATTTCTGAAGAAAATACAGCTAGAAGA 57.050 29.630 9.42 0.00 45.81 2.87
2253 2717 9.070149 GCAAATTTCTGAAGAAAATACAGCTAG 57.930 33.333 9.42 0.00 45.81 3.42
2254 2718 8.575589 TGCAAATTTCTGAAGAAAATACAGCTA 58.424 29.630 9.42 0.86 45.81 3.32
2255 2719 7.436118 TGCAAATTTCTGAAGAAAATACAGCT 58.564 30.769 9.42 0.00 45.81 4.24
2256 2720 7.383300 ACTGCAAATTTCTGAAGAAAATACAGC 59.617 33.333 18.47 14.36 45.81 4.40
2257 2721 8.697067 CACTGCAAATTTCTGAAGAAAATACAG 58.303 33.333 9.42 14.66 45.81 2.74
2258 2722 7.169645 GCACTGCAAATTTCTGAAGAAAATACA 59.830 33.333 9.42 5.60 45.81 2.29
2259 2723 7.169645 TGCACTGCAAATTTCTGAAGAAAATAC 59.830 33.333 9.42 1.73 40.48 1.89
2260 2724 7.169645 GTGCACTGCAAATTTCTGAAGAAAATA 59.830 33.333 10.32 0.00 42.84 1.40
2261 2725 6.018507 GTGCACTGCAAATTTCTGAAGAAAAT 60.019 34.615 10.32 0.00 42.84 1.82
2262 2726 5.291614 GTGCACTGCAAATTTCTGAAGAAAA 59.708 36.000 10.32 0.00 42.84 2.29
2263 2727 4.805192 GTGCACTGCAAATTTCTGAAGAAA 59.195 37.500 10.32 7.89 43.31 2.52
2264 2728 4.362279 GTGCACTGCAAATTTCTGAAGAA 58.638 39.130 10.32 0.00 41.47 2.52
2265 2729 3.243501 GGTGCACTGCAAATTTCTGAAGA 60.244 43.478 17.98 0.00 41.47 2.87
2266 2730 3.054878 GGTGCACTGCAAATTTCTGAAG 58.945 45.455 17.98 0.00 41.47 3.02
2267 2731 2.694628 AGGTGCACTGCAAATTTCTGAA 59.305 40.909 17.98 0.00 41.47 3.02
2268 2732 2.309613 AGGTGCACTGCAAATTTCTGA 58.690 42.857 17.98 0.00 41.47 3.27
2269 2733 2.806608 AGGTGCACTGCAAATTTCTG 57.193 45.000 17.98 0.00 41.47 3.02
2270 2734 3.005791 GGTAAGGTGCACTGCAAATTTCT 59.994 43.478 17.98 0.00 41.47 2.52
2271 2735 3.005791 AGGTAAGGTGCACTGCAAATTTC 59.994 43.478 17.98 1.88 41.47 2.17
2272 2736 2.965147 AGGTAAGGTGCACTGCAAATTT 59.035 40.909 17.98 3.48 41.47 1.82
2273 2737 2.558359 GAGGTAAGGTGCACTGCAAATT 59.442 45.455 17.98 6.26 41.47 1.82
2274 2738 2.162681 GAGGTAAGGTGCACTGCAAAT 58.837 47.619 17.98 0.00 41.47 2.32
2275 2739 1.604604 GAGGTAAGGTGCACTGCAAA 58.395 50.000 17.98 0.00 41.47 3.68
2276 2740 0.602638 CGAGGTAAGGTGCACTGCAA 60.603 55.000 17.98 0.00 41.47 4.08
2277 2741 1.005037 CGAGGTAAGGTGCACTGCA 60.005 57.895 17.98 0.00 35.60 4.41
2278 2742 0.602905 AACGAGGTAAGGTGCACTGC 60.603 55.000 17.98 0.67 0.00 4.40
2279 2743 1.878953 AAACGAGGTAAGGTGCACTG 58.121 50.000 17.98 0.00 0.00 3.66
2280 2744 3.007614 ACATAAACGAGGTAAGGTGCACT 59.992 43.478 17.98 0.00 0.00 4.40
2281 2745 3.332034 ACATAAACGAGGTAAGGTGCAC 58.668 45.455 8.80 8.80 0.00 4.57
2282 2746 3.688694 ACATAAACGAGGTAAGGTGCA 57.311 42.857 0.00 0.00 0.00 4.57
2283 2747 3.998341 TGAACATAAACGAGGTAAGGTGC 59.002 43.478 0.00 0.00 0.00 5.01
2284 2748 5.064707 CCATGAACATAAACGAGGTAAGGTG 59.935 44.000 0.00 0.00 0.00 4.00
2285 2749 5.046159 TCCATGAACATAAACGAGGTAAGGT 60.046 40.000 0.00 0.00 0.00 3.50
2286 2750 5.424757 TCCATGAACATAAACGAGGTAAGG 58.575 41.667 0.00 0.00 0.00 2.69
2287 2751 5.006746 GCTCCATGAACATAAACGAGGTAAG 59.993 44.000 0.00 0.00 0.00 2.34
2288 2752 4.873827 GCTCCATGAACATAAACGAGGTAA 59.126 41.667 0.00 0.00 0.00 2.85
2289 2753 4.439057 GCTCCATGAACATAAACGAGGTA 58.561 43.478 0.00 0.00 0.00 3.08
2290 2754 3.270877 GCTCCATGAACATAAACGAGGT 58.729 45.455 0.00 0.00 0.00 3.85
2291 2755 2.285220 CGCTCCATGAACATAAACGAGG 59.715 50.000 0.00 0.00 0.00 4.63
2292 2756 3.186909 TCGCTCCATGAACATAAACGAG 58.813 45.455 0.00 0.00 0.00 4.18
2293 2757 3.239587 TCGCTCCATGAACATAAACGA 57.760 42.857 0.00 0.00 0.00 3.85
2294 2758 4.271049 AGAATCGCTCCATGAACATAAACG 59.729 41.667 0.00 0.00 0.00 3.60
2295 2759 5.741388 AGAATCGCTCCATGAACATAAAC 57.259 39.130 0.00 0.00 0.00 2.01
2296 2760 5.647658 ACAAGAATCGCTCCATGAACATAAA 59.352 36.000 0.00 0.00 0.00 1.40
2297 2761 5.185454 ACAAGAATCGCTCCATGAACATAA 58.815 37.500 0.00 0.00 0.00 1.90
2298 2762 4.769688 ACAAGAATCGCTCCATGAACATA 58.230 39.130 0.00 0.00 0.00 2.29
2299 2763 3.614092 ACAAGAATCGCTCCATGAACAT 58.386 40.909 0.00 0.00 0.00 2.71
2300 2764 3.057969 ACAAGAATCGCTCCATGAACA 57.942 42.857 0.00 0.00 0.00 3.18
2301 2765 3.001736 GCTACAAGAATCGCTCCATGAAC 59.998 47.826 0.00 0.00 0.00 3.18
2302 2766 3.198068 GCTACAAGAATCGCTCCATGAA 58.802 45.455 0.00 0.00 0.00 2.57
2303 2767 2.168313 TGCTACAAGAATCGCTCCATGA 59.832 45.455 0.00 0.00 0.00 3.07
2304 2768 2.543012 CTGCTACAAGAATCGCTCCATG 59.457 50.000 0.00 0.00 0.00 3.66
2305 2769 2.484417 CCTGCTACAAGAATCGCTCCAT 60.484 50.000 0.00 0.00 0.00 3.41
2306 2770 1.134699 CCTGCTACAAGAATCGCTCCA 60.135 52.381 0.00 0.00 0.00 3.86
2307 2771 1.137086 TCCTGCTACAAGAATCGCTCC 59.863 52.381 0.00 0.00 0.00 4.70
2308 2772 2.099921 TCTCCTGCTACAAGAATCGCTC 59.900 50.000 0.00 0.00 0.00 5.03
2309 2773 2.100584 CTCTCCTGCTACAAGAATCGCT 59.899 50.000 0.00 0.00 0.00 4.93
2310 2774 2.468831 CTCTCCTGCTACAAGAATCGC 58.531 52.381 0.00 0.00 0.00 4.58
2311 2775 2.690497 TCCTCTCCTGCTACAAGAATCG 59.310 50.000 0.00 0.00 0.00 3.34
2312 2776 3.957497 TCTCCTCTCCTGCTACAAGAATC 59.043 47.826 0.00 0.00 0.00 2.52
2313 2777 3.960102 CTCTCCTCTCCTGCTACAAGAAT 59.040 47.826 0.00 0.00 0.00 2.40
2314 2778 3.360867 CTCTCCTCTCCTGCTACAAGAA 58.639 50.000 0.00 0.00 0.00 2.52
2315 2779 2.357673 CCTCTCCTCTCCTGCTACAAGA 60.358 54.545 0.00 0.00 0.00 3.02
2316 2780 2.031120 CCTCTCCTCTCCTGCTACAAG 58.969 57.143 0.00 0.00 0.00 3.16
2317 2781 1.641192 TCCTCTCCTCTCCTGCTACAA 59.359 52.381 0.00 0.00 0.00 2.41
2318 2782 1.214175 CTCCTCTCCTCTCCTGCTACA 59.786 57.143 0.00 0.00 0.00 2.74
2319 2783 1.981256 CTCCTCTCCTCTCCTGCTAC 58.019 60.000 0.00 0.00 0.00 3.58
2320 2784 0.184933 GCTCCTCTCCTCTCCTGCTA 59.815 60.000 0.00 0.00 0.00 3.49
2321 2785 1.076044 GCTCCTCTCCTCTCCTGCT 60.076 63.158 0.00 0.00 0.00 4.24
2322 2786 1.076044 AGCTCCTCTCCTCTCCTGC 60.076 63.158 0.00 0.00 0.00 4.85
2323 2787 1.394266 GCAGCTCCTCTCCTCTCCTG 61.394 65.000 0.00 0.00 0.00 3.86
2324 2788 1.076044 GCAGCTCCTCTCCTCTCCT 60.076 63.158 0.00 0.00 0.00 3.69
2325 2789 0.687427 AAGCAGCTCCTCTCCTCTCC 60.687 60.000 0.00 0.00 0.00 3.71
2326 2790 0.746659 GAAGCAGCTCCTCTCCTCTC 59.253 60.000 0.00 0.00 0.00 3.20
2327 2791 0.040942 TGAAGCAGCTCCTCTCCTCT 59.959 55.000 0.00 0.00 0.00 3.69
2328 2792 1.122227 ATGAAGCAGCTCCTCTCCTC 58.878 55.000 0.00 0.00 0.00 3.71
2329 2793 0.831966 CATGAAGCAGCTCCTCTCCT 59.168 55.000 0.00 0.00 0.00 3.69
2330 2794 0.814812 GCATGAAGCAGCTCCTCTCC 60.815 60.000 0.00 0.00 44.79 3.71
2331 2795 2.692817 GCATGAAGCAGCTCCTCTC 58.307 57.895 0.00 0.00 44.79 3.20
2332 2796 4.959399 GCATGAAGCAGCTCCTCT 57.041 55.556 0.00 0.00 44.79 3.69
2397 2864 2.097142 GCACATCAAGTCTCCATTCAGC 59.903 50.000 0.00 0.00 0.00 4.26
2598 3071 3.067106 ACGAACTAACTGCACAATCCTG 58.933 45.455 0.00 0.00 0.00 3.86
2632 3114 1.402259 CTTGTGGGCGTGTTTGTAACA 59.598 47.619 0.00 0.00 39.52 2.41
2657 3140 1.135915 AGGACGATGAGTGATGACAGC 59.864 52.381 0.00 0.00 0.00 4.40
2658 3141 2.540565 CGAGGACGATGAGTGATGACAG 60.541 54.545 0.00 0.00 42.66 3.51
2659 3142 1.401905 CGAGGACGATGAGTGATGACA 59.598 52.381 0.00 0.00 42.66 3.58
2674 3157 1.134189 TCGAAGTAGCTGGATCGAGGA 60.134 52.381 13.35 0.00 39.19 3.71
2685 3168 2.987821 GTGGTGAAGAAGTCGAAGTAGC 59.012 50.000 0.00 0.00 0.00 3.58
2734 3224 5.123186 AGTCTAGTCGTCTCTCTCACAAATG 59.877 44.000 0.00 0.00 0.00 2.32
2762 3252 7.277760 CACGTCTCATATTATTGTGGACTGAAA 59.722 37.037 0.00 0.00 0.00 2.69
2889 3385 1.673920 TCTGGTTTTCGTGTCTTTGCC 59.326 47.619 0.00 0.00 0.00 4.52
2898 3394 1.344763 CCTCTGGTCTCTGGTTTTCGT 59.655 52.381 0.00 0.00 0.00 3.85
2928 3424 3.499048 GCTGTGTGCATGATCTTTTCTG 58.501 45.455 0.00 0.00 42.31 3.02
2945 3441 0.185901 TCCAAGAGCCAAAAGGCTGT 59.814 50.000 14.61 7.09 46.05 4.40
2964 3460 4.596585 CACCCGGGGCACTGGTTT 62.597 66.667 27.92 0.00 41.93 3.27
2972 3468 2.579410 AATATTCATACACCCGGGGC 57.421 50.000 27.92 0.00 0.00 5.80
3005 3501 5.706833 TCATGGAAATCTGCGTGCATATAAT 59.293 36.000 0.00 0.00 30.32 1.28
3015 3511 2.466846 GGCATTTCATGGAAATCTGCG 58.533 47.619 5.01 0.00 39.82 5.18
3025 3521 6.621164 GCATAAACAAGTTTGGGCATTTCATG 60.621 38.462 8.37 2.58 34.92 3.07
3032 3528 2.432146 TGTGCATAAACAAGTTTGGGCA 59.568 40.909 16.67 16.67 39.13 5.36
3047 3543 4.870426 CGTGAGTAAATAAGTCCTGTGCAT 59.130 41.667 0.00 0.00 0.00 3.96
3057 3553 9.182475 AGACCAGGTCTCACGTGAGTAAATAAG 62.182 44.444 37.21 24.51 40.19 1.73
3059 3555 6.038619 AGACCAGGTCTCACGTGAGTAAATA 61.039 44.000 37.21 20.45 40.19 1.40
3073 3569 6.882768 AAAGAATTCTATGAGACCAGGTCT 57.117 37.500 23.18 23.18 46.42 3.85
3074 3570 6.540551 GGAAAAGAATTCTATGAGACCAGGTC 59.459 42.308 12.25 12.25 0.00 3.85
3075 3571 6.418946 GGAAAAGAATTCTATGAGACCAGGT 58.581 40.000 8.75 0.00 0.00 4.00
3076 3572 5.525378 CGGAAAAGAATTCTATGAGACCAGG 59.475 44.000 8.75 0.00 0.00 4.45
3077 3573 6.109359 ACGGAAAAGAATTCTATGAGACCAG 58.891 40.000 8.75 6.43 0.00 4.00
3078 3574 6.049955 ACGGAAAAGAATTCTATGAGACCA 57.950 37.500 8.75 0.00 0.00 4.02
3079 3575 6.819146 AGAACGGAAAAGAATTCTATGAGACC 59.181 38.462 8.75 6.24 29.63 3.85
3080 3576 7.201565 CCAGAACGGAAAAGAATTCTATGAGAC 60.202 40.741 8.75 0.00 36.56 3.36
3081 3577 6.818644 CCAGAACGGAAAAGAATTCTATGAGA 59.181 38.462 8.75 0.00 36.56 3.27
3082 3578 6.818644 TCCAGAACGGAAAAGAATTCTATGAG 59.181 38.462 8.75 2.65 42.52 2.90
3083 3579 6.707290 TCCAGAACGGAAAAGAATTCTATGA 58.293 36.000 8.75 0.00 42.52 2.15
3084 3580 6.985188 TCCAGAACGGAAAAGAATTCTATG 57.015 37.500 8.75 0.00 42.52 2.23
3098 3594 5.541845 TGAGCTGATAAATATCCAGAACGG 58.458 41.667 0.00 0.00 31.71 4.44
3099 3595 6.479990 TGTTGAGCTGATAAATATCCAGAACG 59.520 38.462 0.00 0.00 31.71 3.95
3100 3596 7.792374 TGTTGAGCTGATAAATATCCAGAAC 57.208 36.000 0.00 0.00 31.71 3.01
3101 3597 8.677300 GTTTGTTGAGCTGATAAATATCCAGAA 58.323 33.333 0.00 0.00 31.71 3.02
3102 3598 7.828717 TGTTTGTTGAGCTGATAAATATCCAGA 59.171 33.333 0.00 0.00 31.71 3.86
3103 3599 7.988737 TGTTTGTTGAGCTGATAAATATCCAG 58.011 34.615 0.00 0.00 31.71 3.86
3104 3600 7.936496 TGTTTGTTGAGCTGATAAATATCCA 57.064 32.000 0.00 0.00 31.71 3.41
3105 3601 8.408601 ACATGTTTGTTGAGCTGATAAATATCC 58.591 33.333 0.00 0.00 29.55 2.59
3108 3604 9.665719 TCTACATGTTTGTTGAGCTGATAAATA 57.334 29.630 2.30 0.00 37.28 1.40
3109 3605 8.565896 TCTACATGTTTGTTGAGCTGATAAAT 57.434 30.769 2.30 0.00 37.28 1.40
3110 3606 7.977789 TCTACATGTTTGTTGAGCTGATAAA 57.022 32.000 2.30 0.00 37.28 1.40
3111 3607 8.565896 AATCTACATGTTTGTTGAGCTGATAA 57.434 30.769 2.30 0.00 40.18 1.75
3112 3608 9.098355 GTAATCTACATGTTTGTTGAGCTGATA 57.902 33.333 2.30 0.00 40.18 2.15
3113 3609 7.826252 AGTAATCTACATGTTTGTTGAGCTGAT 59.174 33.333 2.30 0.00 40.18 2.90
3114 3610 7.161404 AGTAATCTACATGTTTGTTGAGCTGA 58.839 34.615 2.30 0.00 40.18 4.26
3115 3611 7.369803 AGTAATCTACATGTTTGTTGAGCTG 57.630 36.000 2.30 0.00 40.18 4.24
3116 3612 9.502091 TTTAGTAATCTACATGTTTGTTGAGCT 57.498 29.630 2.30 0.00 40.18 4.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.