Multiple sequence alignment - TraesCS4A01G141900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G141900 chr4A 100.000 1932 0 0 1 1932 225312465 225314396 0.000000e+00 3568.0
1 TraesCS4A01G141900 chr4A 100.000 141 0 0 2220 2360 225314684 225314824 6.470000e-66 261.0
2 TraesCS4A01G141900 chr1A 93.231 1374 63 11 8 1366 583932319 583930961 0.000000e+00 1995.0
3 TraesCS4A01G141900 chr1A 95.668 277 11 1 1374 1649 108409126 108409402 5.990000e-121 444.0
4 TraesCS4A01G141900 chr1A 91.626 203 14 1 1 203 583932511 583932312 6.420000e-71 278.0
5 TraesCS4A01G141900 chr1A 93.860 114 6 1 2247 2359 583930781 583930668 1.120000e-38 171.0
6 TraesCS4A01G141900 chr1A 100.000 28 0 0 2220 2247 38659170 38659197 4.000000e-03 52.8
7 TraesCS4A01G141900 chr4B 91.195 1397 94 12 1 1381 248909000 248910383 0.000000e+00 1871.0
8 TraesCS4A01G141900 chr4B 85.668 1242 136 22 147 1373 546667194 546668408 0.000000e+00 1269.0
9 TraesCS4A01G141900 chr4B 92.965 199 8 1 1647 1839 248910380 248910578 3.840000e-73 285.0
10 TraesCS4A01G141900 chr4B 85.437 206 15 5 1648 1838 546668414 546668619 1.430000e-47 200.0
11 TraesCS4A01G141900 chr4B 92.982 114 7 1 2247 2359 248910567 248910680 5.220000e-37 165.0
12 TraesCS4A01G141900 chr7B 85.289 1244 146 18 147 1373 484921642 484922865 0.000000e+00 1249.0
13 TraesCS4A01G141900 chr7B 84.980 1245 148 20 147 1373 484916370 484917593 0.000000e+00 1227.0
14 TraesCS4A01G141900 chr7B 88.959 951 69 14 444 1381 364047222 364046295 0.000000e+00 1142.0
15 TraesCS4A01G141900 chr7B 94.048 84 3 2 1827 1909 713467153 713467071 2.460000e-25 126.0
16 TraesCS4A01G141900 chr7B 100.000 29 0 0 2220 2248 616920307 616920335 1.000000e-03 54.7
17 TraesCS4A01G141900 chr2A 85.129 1244 148 18 147 1373 655659091 655660314 0.000000e+00 1238.0
18 TraesCS4A01G141900 chr2A 97.388 268 7 0 1380 1647 154095939 154095672 7.690000e-125 457.0
19 TraesCS4A01G141900 chr2A 95.941 271 11 0 1379 1649 107159231 107158961 7.740000e-120 440.0
20 TraesCS4A01G141900 chr2A 96.269 268 10 0 1379 1646 215849263 215849530 7.740000e-120 440.0
21 TraesCS4A01G141900 chr2A 84.466 206 17 4 1648 1838 655660320 655660525 3.100000e-44 189.0
22 TraesCS4A01G141900 chr2A 97.333 75 2 0 1835 1909 622990986 622990912 6.850000e-26 128.0
23 TraesCS4A01G141900 chr2A 97.333 75 1 1 1836 1909 746976293 746976219 2.460000e-25 126.0
24 TraesCS4A01G141900 chr2B 92.407 856 47 5 536 1381 426777431 426778278 0.000000e+00 1205.0
25 TraesCS4A01G141900 chr2B 92.150 535 34 4 1 531 426776129 426776659 0.000000e+00 749.0
26 TraesCS4A01G141900 chr2B 90.955 199 12 1 1647 1839 426778275 426778473 1.800000e-66 263.0
27 TraesCS4A01G141900 chr6B 83.876 1259 155 24 147 1373 650658848 650660090 0.000000e+00 1157.0
28 TraesCS4A01G141900 chr6B 91.774 389 23 2 1002 1381 157561598 157561210 1.240000e-147 532.0
29 TraesCS4A01G141900 chr6B 100.000 28 0 0 2220 2247 101273249 101273222 4.000000e-03 52.8
30 TraesCS4A01G141900 chr1B 84.230 1097 136 19 156 1238 286976293 286977366 0.000000e+00 1033.0
31 TraesCS4A01G141900 chr3B 85.447 907 103 17 147 1044 734586279 734585393 0.000000e+00 917.0
32 TraesCS4A01G141900 chr3B 83.981 206 18 4 1648 1838 734576474 734576269 1.440000e-42 183.0
33 TraesCS4A01G141900 chr3B 100.000 28 0 0 2220 2247 748512357 748512330 4.000000e-03 52.8
34 TraesCS4A01G141900 chr3A 97.482 278 6 1 1376 1652 482445602 482445325 7.630000e-130 473.0
35 TraesCS4A01G141900 chr3A 96.591 264 9 0 1383 1646 552989347 552989084 2.780000e-119 438.0
36 TraesCS4A01G141900 chr3A 94.056 286 16 1 1370 1655 550717856 550717572 1.300000e-117 433.0
37 TraesCS4A01G141900 chr3A 96.104 77 2 1 1836 1912 478619889 478619814 8.860000e-25 124.0
38 TraesCS4A01G141900 chr3A 100.000 29 0 0 2220 2248 698933638 698933610 1.000000e-03 54.7
39 TraesCS4A01G141900 chr3A 100.000 28 0 0 2220 2247 698932902 698932875 4.000000e-03 52.8
40 TraesCS4A01G141900 chr7A 97.037 270 7 1 1378 1646 243103692 243103961 9.940000e-124 453.0
41 TraesCS4A01G141900 chr7A 97.297 74 1 1 1836 1909 556133632 556133560 8.860000e-25 124.0
42 TraesCS4A01G141900 chr7A 96.053 76 3 0 1834 1909 700681278 700681203 8.860000e-25 124.0
43 TraesCS4A01G141900 chr7A 96.053 76 2 1 1834 1909 128970091 128970017 3.190000e-24 122.0
44 TraesCS4A01G141900 chr7A 100.000 30 0 0 2220 2249 438988340 438988369 3.280000e-04 56.5
45 TraesCS4A01G141900 chr6D 94.681 282 12 3 1366 1647 130962260 130962538 3.600000e-118 435.0
46 TraesCS4A01G141900 chr6D 83.575 207 17 4 1647 1838 395341607 395341403 6.700000e-41 178.0
47 TraesCS4A01G141900 chr6D 83.092 207 18 4 1647 1838 395336067 395335863 3.120000e-39 172.0
48 TraesCS4A01G141900 chr6D 90.076 131 11 1 1647 1777 395339757 395339629 4.030000e-38 169.0
49 TraesCS4A01G141900 chr6A 92.821 195 6 1 1032 1218 169501539 169501733 2.310000e-70 276.0
50 TraesCS4A01G141900 chr6A 90.805 174 10 1 1647 1814 169501806 169501979 6.560000e-56 228.0
51 TraesCS4A01G141900 chr5B 98.667 75 1 0 1835 1909 53736139 53736065 1.470000e-27 134.0
52 TraesCS4A01G141900 chrUn 94.872 78 3 1 1836 1912 47265995 47266072 1.150000e-23 121.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G141900 chr4A 225312465 225314824 2359 False 1914.500000 3568 100.000000 1 2360 2 chr4A.!!$F1 2359
1 TraesCS4A01G141900 chr1A 583930668 583932511 1843 True 814.666667 1995 92.905667 1 2359 3 chr1A.!!$R1 2358
2 TraesCS4A01G141900 chr4B 248909000 248910680 1680 False 773.666667 1871 92.380667 1 2359 3 chr4B.!!$F1 2358
3 TraesCS4A01G141900 chr4B 546667194 546668619 1425 False 734.500000 1269 85.552500 147 1838 2 chr4B.!!$F2 1691
4 TraesCS4A01G141900 chr7B 484921642 484922865 1223 False 1249.000000 1249 85.289000 147 1373 1 chr7B.!!$F2 1226
5 TraesCS4A01G141900 chr7B 484916370 484917593 1223 False 1227.000000 1227 84.980000 147 1373 1 chr7B.!!$F1 1226
6 TraesCS4A01G141900 chr7B 364046295 364047222 927 True 1142.000000 1142 88.959000 444 1381 1 chr7B.!!$R1 937
7 TraesCS4A01G141900 chr2A 655659091 655660525 1434 False 713.500000 1238 84.797500 147 1838 2 chr2A.!!$F2 1691
8 TraesCS4A01G141900 chr2B 426776129 426778473 2344 False 739.000000 1205 91.837333 1 1839 3 chr2B.!!$F1 1838
9 TraesCS4A01G141900 chr6B 650658848 650660090 1242 False 1157.000000 1157 83.876000 147 1373 1 chr6B.!!$F1 1226
10 TraesCS4A01G141900 chr1B 286976293 286977366 1073 False 1033.000000 1033 84.230000 156 1238 1 chr1B.!!$F1 1082
11 TraesCS4A01G141900 chr3B 734585393 734586279 886 True 917.000000 917 85.447000 147 1044 1 chr3B.!!$R2 897

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
258 460 0.027194 CAGATGCTCACCGAATTGCG 59.973 55.0 0.0 0.0 40.47 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1858 2917 0.037303 CGTACTCGGCCCCTCCTATA 59.963 60.0 0.0 0.0 0.0 1.31 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
111 298 1.269621 ACTGTGTCGTGGTAGCTTCAC 60.270 52.381 0.00 0.00 0.00 3.18
126 313 2.415168 GCTTCACGCATTTAGCTGTACA 59.585 45.455 0.00 0.00 42.61 2.90
127 314 3.063997 GCTTCACGCATTTAGCTGTACAT 59.936 43.478 0.00 0.00 42.61 2.29
128 315 4.270084 GCTTCACGCATTTAGCTGTACATA 59.730 41.667 0.00 0.00 42.61 2.29
159 346 5.242795 AGTAGGCAAACAAATGTAGGTCT 57.757 39.130 0.00 0.00 0.00 3.85
203 402 7.467811 GCATGCATGAGCTACTTACTGTTATTT 60.468 37.037 30.64 0.00 42.74 1.40
220 419 6.935167 TGTTATTTAGAGATGCAGTCTGACA 58.065 36.000 10.88 1.59 37.29 3.58
221 420 7.386059 TGTTATTTAGAGATGCAGTCTGACAA 58.614 34.615 10.88 3.10 37.29 3.18
222 421 8.043113 TGTTATTTAGAGATGCAGTCTGACAAT 58.957 33.333 10.88 8.82 37.29 2.71
250 452 2.362736 TCATTTGCTCAGATGCTCACC 58.637 47.619 0.00 0.00 0.00 4.02
258 460 0.027194 CAGATGCTCACCGAATTGCG 59.973 55.000 0.00 0.00 40.47 4.85
286 488 3.264947 GGCTCATTTTTCAGCCCAATTC 58.735 45.455 0.00 0.00 0.00 2.17
296 498 3.609853 TCAGCCCAATTCTGACACATAC 58.390 45.455 0.00 0.00 35.81 2.39
411 614 6.804677 TGCATGTACTGAACAAACAAATCTT 58.195 32.000 0.00 0.00 42.70 2.40
515 725 5.633473 TTCCCCTATACCAGGTATCATCT 57.367 43.478 15.99 0.00 43.80 2.90
600 1577 1.543941 GATGCGAATCCGTCTGCTCG 61.544 60.000 0.00 0.00 38.24 5.03
604 1581 0.656259 CGAATCCGTCTGCTCGTAGA 59.344 55.000 0.00 0.00 0.00 2.59
642 1621 5.575157 TGATTGGGATACTAAAAGCCACAA 58.425 37.500 0.00 0.00 41.93 3.33
648 1627 6.770785 TGGGATACTAAAAGCCACAATGTATC 59.229 38.462 0.00 0.00 36.06 2.24
689 1669 0.250295 CCAGCCTCTCCGTTGTTTGA 60.250 55.000 0.00 0.00 0.00 2.69
690 1670 1.593196 CAGCCTCTCCGTTGTTTGAA 58.407 50.000 0.00 0.00 0.00 2.69
691 1671 1.264288 CAGCCTCTCCGTTGTTTGAAC 59.736 52.381 0.00 0.00 0.00 3.18
692 1672 1.134220 AGCCTCTCCGTTGTTTGAACA 60.134 47.619 0.00 0.00 37.08 3.18
693 1673 1.673920 GCCTCTCCGTTGTTTGAACAA 59.326 47.619 5.25 5.25 45.88 2.83
728 1735 3.105157 GCGGCGCCAAAACATGTG 61.105 61.111 28.98 7.61 0.00 3.21
741 1748 6.701400 GCCAAAACATGTGAGTTACTTTCATT 59.299 34.615 0.00 0.00 0.00 2.57
827 1834 9.350357 CTCTCCTGTGTGAATTTTCAAAATATG 57.650 33.333 0.00 0.00 39.21 1.78
931 1940 3.956848 TGAGAGACATCCGAGACATGAAT 59.043 43.478 0.00 0.00 0.00 2.57
957 1967 2.514458 AAAATGAGAAGGTCGGCCAT 57.486 45.000 9.71 0.00 37.19 4.40
959 1969 1.755179 AATGAGAAGGTCGGCCATTG 58.245 50.000 9.71 0.00 37.19 2.82
1123 2141 2.270257 TGCTTTGCTCGCCTGCATT 61.270 52.632 0.00 0.00 42.96 3.56
1238 2256 0.311790 GGGATATCGTACGTTGCCGA 59.688 55.000 16.05 0.00 37.88 5.54
1323 2341 3.374764 TCATGCTTCTCTAGGCCTGTTA 58.625 45.455 17.99 0.00 0.00 2.41
1340 2358 6.349300 GCCTGTTATTCTCTCATTTAGGTCA 58.651 40.000 0.00 0.00 0.00 4.02
1366 2385 1.035932 TACGTCTGCCTAGGCCTCAC 61.036 60.000 30.81 21.38 41.09 3.51
1373 2395 1.127343 GCCTAGGCCTCACTCTGAAT 58.873 55.000 24.19 0.00 34.56 2.57
1377 2399 0.990374 AGGCCTCACTCTGAATGCTT 59.010 50.000 0.00 0.00 0.00 3.91
1378 2400 2.191400 AGGCCTCACTCTGAATGCTTA 58.809 47.619 0.00 0.00 0.00 3.09
1379 2401 2.573462 AGGCCTCACTCTGAATGCTTAA 59.427 45.455 0.00 0.00 0.00 1.85
1380 2402 2.941720 GGCCTCACTCTGAATGCTTAAG 59.058 50.000 0.00 0.00 0.00 1.85
1381 2403 3.369892 GGCCTCACTCTGAATGCTTAAGA 60.370 47.826 6.67 0.00 0.00 2.10
1382 2404 3.870419 GCCTCACTCTGAATGCTTAAGAG 59.130 47.826 6.67 8.11 42.59 2.85
1383 2405 4.440880 CCTCACTCTGAATGCTTAAGAGG 58.559 47.826 6.67 0.00 41.47 3.69
1384 2406 3.866651 TCACTCTGAATGCTTAAGAGGC 58.133 45.455 6.67 0.00 41.47 4.70
1385 2407 3.517100 TCACTCTGAATGCTTAAGAGGCT 59.483 43.478 6.67 0.00 41.47 4.58
1386 2408 3.622163 CACTCTGAATGCTTAAGAGGCTG 59.378 47.826 6.67 0.00 41.47 4.85
1387 2409 3.262915 ACTCTGAATGCTTAAGAGGCTGT 59.737 43.478 6.67 0.00 41.47 4.40
1388 2410 4.260170 CTCTGAATGCTTAAGAGGCTGTT 58.740 43.478 6.67 1.39 34.95 3.16
1389 2411 4.655963 TCTGAATGCTTAAGAGGCTGTTT 58.344 39.130 6.67 0.00 0.00 2.83
1390 2412 4.456911 TCTGAATGCTTAAGAGGCTGTTTG 59.543 41.667 6.67 0.00 0.00 2.93
1391 2413 3.507233 TGAATGCTTAAGAGGCTGTTTGG 59.493 43.478 6.67 0.00 0.00 3.28
1392 2414 2.656947 TGCTTAAGAGGCTGTTTGGT 57.343 45.000 6.67 0.00 0.00 3.67
1393 2415 2.944129 TGCTTAAGAGGCTGTTTGGTT 58.056 42.857 6.67 0.00 0.00 3.67
1394 2416 3.295973 TGCTTAAGAGGCTGTTTGGTTT 58.704 40.909 6.67 0.00 0.00 3.27
1395 2417 3.068024 TGCTTAAGAGGCTGTTTGGTTTG 59.932 43.478 6.67 0.00 0.00 2.93
1396 2418 3.068165 GCTTAAGAGGCTGTTTGGTTTGT 59.932 43.478 6.67 0.00 0.00 2.83
1397 2419 4.610945 CTTAAGAGGCTGTTTGGTTTGTG 58.389 43.478 0.90 0.00 0.00 3.33
1398 2420 2.435372 AGAGGCTGTTTGGTTTGTGA 57.565 45.000 0.00 0.00 0.00 3.58
1399 2421 2.024414 AGAGGCTGTTTGGTTTGTGAC 58.976 47.619 0.00 0.00 0.00 3.67
1400 2422 2.024414 GAGGCTGTTTGGTTTGTGACT 58.976 47.619 0.00 0.00 0.00 3.41
1401 2423 3.118038 AGAGGCTGTTTGGTTTGTGACTA 60.118 43.478 0.00 0.00 0.00 2.59
1402 2424 3.626930 AGGCTGTTTGGTTTGTGACTAA 58.373 40.909 0.00 0.00 0.00 2.24
1403 2425 3.380320 AGGCTGTTTGGTTTGTGACTAAC 59.620 43.478 1.25 1.25 0.00 2.34
1404 2426 3.380320 GGCTGTTTGGTTTGTGACTAACT 59.620 43.478 9.55 0.00 0.00 2.24
1405 2427 4.142249 GGCTGTTTGGTTTGTGACTAACTT 60.142 41.667 9.55 0.00 0.00 2.66
1406 2428 5.407502 GCTGTTTGGTTTGTGACTAACTTT 58.592 37.500 9.55 0.00 0.00 2.66
1407 2429 5.288472 GCTGTTTGGTTTGTGACTAACTTTG 59.712 40.000 9.55 0.00 0.00 2.77
1408 2430 5.164954 TGTTTGGTTTGTGACTAACTTTGC 58.835 37.500 9.55 0.62 0.00 3.68
1409 2431 4.379339 TTGGTTTGTGACTAACTTTGCC 57.621 40.909 9.55 0.00 0.00 4.52
1410 2432 3.357203 TGGTTTGTGACTAACTTTGCCA 58.643 40.909 9.55 0.00 0.00 4.92
1411 2433 3.764434 TGGTTTGTGACTAACTTTGCCAA 59.236 39.130 9.55 0.00 0.00 4.52
1412 2434 4.220821 TGGTTTGTGACTAACTTTGCCAAA 59.779 37.500 9.55 0.00 0.00 3.28
1413 2435 4.803613 GGTTTGTGACTAACTTTGCCAAAG 59.196 41.667 15.47 15.47 44.10 2.77
1414 2436 5.393678 GGTTTGTGACTAACTTTGCCAAAGA 60.394 40.000 23.32 1.30 41.02 2.52
1415 2437 6.273071 GTTTGTGACTAACTTTGCCAAAGAT 58.727 36.000 23.32 14.26 41.02 2.40
1416 2438 6.463995 TTGTGACTAACTTTGCCAAAGATT 57.536 33.333 23.32 14.98 41.02 2.40
1417 2439 5.830912 TGTGACTAACTTTGCCAAAGATTG 58.169 37.500 23.32 14.58 41.02 2.67
1418 2440 4.681483 GTGACTAACTTTGCCAAAGATTGC 59.319 41.667 23.32 9.44 41.02 3.56
1419 2441 4.237724 GACTAACTTTGCCAAAGATTGCC 58.762 43.478 23.32 1.98 41.02 4.52
1420 2442 3.640967 ACTAACTTTGCCAAAGATTGCCA 59.359 39.130 23.32 0.00 41.02 4.92
1421 2443 2.531522 ACTTTGCCAAAGATTGCCAC 57.468 45.000 23.32 0.00 41.02 5.01
1422 2444 1.761784 ACTTTGCCAAAGATTGCCACA 59.238 42.857 23.32 0.00 41.02 4.17
1423 2445 2.137523 CTTTGCCAAAGATTGCCACAC 58.862 47.619 11.83 0.00 41.02 3.82
1424 2446 0.392336 TTGCCAAAGATTGCCACACC 59.608 50.000 0.00 0.00 0.00 4.16
1425 2447 0.469705 TGCCAAAGATTGCCACACCT 60.470 50.000 0.00 0.00 0.00 4.00
1426 2448 1.202989 TGCCAAAGATTGCCACACCTA 60.203 47.619 0.00 0.00 0.00 3.08
1427 2449 1.892474 GCCAAAGATTGCCACACCTAA 59.108 47.619 0.00 0.00 0.00 2.69
1428 2450 2.094545 GCCAAAGATTGCCACACCTAAG 60.095 50.000 0.00 0.00 0.00 2.18
1429 2451 2.493278 CCAAAGATTGCCACACCTAAGG 59.507 50.000 0.00 0.00 0.00 2.69
1430 2452 3.157087 CAAAGATTGCCACACCTAAGGT 58.843 45.455 0.00 0.00 35.62 3.50
1431 2453 3.525800 AAGATTGCCACACCTAAGGTT 57.474 42.857 0.00 0.00 31.02 3.50
1432 2454 4.650972 AAGATTGCCACACCTAAGGTTA 57.349 40.909 0.00 0.00 31.02 2.85
1433 2455 4.222124 AGATTGCCACACCTAAGGTTAG 57.778 45.455 0.00 0.00 31.02 2.34
1457 2479 2.863809 AGTTTGGCCAACTTAGGTGAG 58.136 47.619 20.35 0.00 43.89 3.51
1458 2480 2.174854 AGTTTGGCCAACTTAGGTGAGT 59.825 45.455 20.35 0.07 43.89 3.41
1459 2481 2.270352 TTGGCCAACTTAGGTGAGTG 57.730 50.000 16.05 0.00 0.00 3.51
1460 2482 1.136828 TGGCCAACTTAGGTGAGTGT 58.863 50.000 0.61 0.00 0.00 3.55
1461 2483 1.493022 TGGCCAACTTAGGTGAGTGTT 59.507 47.619 0.61 0.00 0.00 3.32
1462 2484 2.092103 TGGCCAACTTAGGTGAGTGTTT 60.092 45.455 0.61 0.00 0.00 2.83
1463 2485 2.293399 GGCCAACTTAGGTGAGTGTTTG 59.707 50.000 0.00 0.00 0.00 2.93
1464 2486 2.293399 GCCAACTTAGGTGAGTGTTTGG 59.707 50.000 0.00 0.00 0.00 3.28
1465 2487 3.551846 CCAACTTAGGTGAGTGTTTGGT 58.448 45.455 0.00 0.00 0.00 3.67
1466 2488 3.951680 CCAACTTAGGTGAGTGTTTGGTT 59.048 43.478 0.00 0.00 0.00 3.67
1467 2489 4.036380 CCAACTTAGGTGAGTGTTTGGTTC 59.964 45.833 0.00 0.00 0.00 3.62
1468 2490 4.497291 ACTTAGGTGAGTGTTTGGTTCA 57.503 40.909 0.00 0.00 0.00 3.18
1469 2491 4.850680 ACTTAGGTGAGTGTTTGGTTCAA 58.149 39.130 0.00 0.00 0.00 2.69
1470 2492 4.881850 ACTTAGGTGAGTGTTTGGTTCAAG 59.118 41.667 0.00 0.00 0.00 3.02
1471 2493 2.024414 AGGTGAGTGTTTGGTTCAAGC 58.976 47.619 0.00 0.00 0.00 4.01
1472 2494 1.067060 GGTGAGTGTTTGGTTCAAGCC 59.933 52.381 0.00 0.00 0.00 4.35
1473 2495 1.748493 GTGAGTGTTTGGTTCAAGCCA 59.252 47.619 0.00 0.00 36.62 4.75
1474 2496 1.748493 TGAGTGTTTGGTTCAAGCCAC 59.252 47.619 0.00 0.00 38.42 5.01
1475 2497 1.748493 GAGTGTTTGGTTCAAGCCACA 59.252 47.619 11.95 0.00 38.42 4.17
1476 2498 1.476488 AGTGTTTGGTTCAAGCCACAC 59.524 47.619 10.00 10.00 39.10 3.82
1477 2499 0.820871 TGTTTGGTTCAAGCCACACC 59.179 50.000 0.54 0.00 38.17 4.16
1478 2500 1.111277 GTTTGGTTCAAGCCACACCT 58.889 50.000 0.00 0.00 38.42 4.00
1479 2501 1.480545 GTTTGGTTCAAGCCACACCTT 59.519 47.619 0.00 0.00 38.42 3.50
1480 2502 2.691011 GTTTGGTTCAAGCCACACCTTA 59.309 45.455 0.00 0.00 38.42 2.69
1481 2503 2.270352 TGGTTCAAGCCACACCTTAG 57.730 50.000 0.00 0.00 32.81 2.18
1482 2504 1.202879 TGGTTCAAGCCACACCTTAGG 60.203 52.381 0.00 0.00 32.81 2.69
1488 2510 4.002797 CCACACCTTAGGCAAGCC 57.997 61.111 2.02 2.02 0.00 4.35
1489 2511 1.074775 CCACACCTTAGGCAAGCCA 59.925 57.895 14.40 0.00 38.92 4.75
1490 2512 1.244019 CCACACCTTAGGCAAGCCAC 61.244 60.000 14.40 0.00 38.92 5.01
1491 2513 0.537143 CACACCTTAGGCAAGCCACA 60.537 55.000 14.40 0.00 38.92 4.17
1492 2514 0.537371 ACACCTTAGGCAAGCCACAC 60.537 55.000 14.40 0.00 38.92 3.82
1493 2515 0.250901 CACCTTAGGCAAGCCACACT 60.251 55.000 14.40 0.00 38.92 3.55
1494 2516 0.478507 ACCTTAGGCAAGCCACACTT 59.521 50.000 14.40 0.00 40.05 3.16
1501 2523 2.521708 AAGCCACACTTGTGCCCC 60.522 61.111 3.68 0.00 44.34 5.80
1502 2524 3.372422 AAGCCACACTTGTGCCCCA 62.372 57.895 3.68 0.00 44.34 4.96
1503 2525 3.605664 GCCACACTTGTGCCCCAC 61.606 66.667 3.68 0.00 44.34 4.61
1504 2526 2.123939 CCACACTTGTGCCCCACA 60.124 61.111 3.68 0.00 44.34 4.17
1505 2527 1.531365 CCACACTTGTGCCCCACAT 60.531 57.895 3.68 0.00 44.16 3.21
1506 2528 1.661480 CACACTTGTGCCCCACATG 59.339 57.895 8.99 8.99 44.16 3.21
1507 2529 1.531365 ACACTTGTGCCCCACATGG 60.531 57.895 13.49 0.00 44.16 3.66
1516 2538 2.492418 CCCCACATGGCATACACAC 58.508 57.895 0.00 0.00 0.00 3.82
1517 2539 0.323269 CCCCACATGGCATACACACA 60.323 55.000 0.00 0.00 0.00 3.72
1518 2540 1.543607 CCCACATGGCATACACACAA 58.456 50.000 0.00 0.00 0.00 3.33
1519 2541 1.891811 CCCACATGGCATACACACAAA 59.108 47.619 0.00 0.00 0.00 2.83
1520 2542 2.298446 CCCACATGGCATACACACAAAA 59.702 45.455 0.00 0.00 0.00 2.44
1521 2543 3.244009 CCCACATGGCATACACACAAAAA 60.244 43.478 0.00 0.00 0.00 1.94
1522 2544 3.989167 CCACATGGCATACACACAAAAAG 59.011 43.478 0.00 0.00 0.00 2.27
1523 2545 4.501229 CCACATGGCATACACACAAAAAGT 60.501 41.667 0.00 0.00 0.00 2.66
1536 2558 4.058721 ACAAAAAGTGTGGCAAGATTCC 57.941 40.909 0.00 0.00 39.72 3.01
1537 2559 3.181466 ACAAAAAGTGTGGCAAGATTCCC 60.181 43.478 0.00 0.00 39.72 3.97
1538 2560 2.683211 AAAGTGTGGCAAGATTCCCT 57.317 45.000 0.00 0.00 0.00 4.20
1539 2561 2.683211 AAGTGTGGCAAGATTCCCTT 57.317 45.000 0.00 0.00 34.91 3.95
1540 2562 3.806949 AAGTGTGGCAAGATTCCCTTA 57.193 42.857 0.00 0.00 32.86 2.69
1541 2563 3.356529 AGTGTGGCAAGATTCCCTTAG 57.643 47.619 0.00 0.00 32.86 2.18
1542 2564 2.025887 AGTGTGGCAAGATTCCCTTAGG 60.026 50.000 0.00 0.00 32.86 2.69
1543 2565 1.340991 TGTGGCAAGATTCCCTTAGGC 60.341 52.381 0.00 0.00 32.86 3.93
1544 2566 1.064389 GTGGCAAGATTCCCTTAGGCT 60.064 52.381 0.00 0.00 32.86 4.58
1545 2567 1.640670 TGGCAAGATTCCCTTAGGCTT 59.359 47.619 0.00 0.00 32.86 4.35
1546 2568 2.027385 GGCAAGATTCCCTTAGGCTTG 58.973 52.381 10.63 10.63 39.06 4.01
1548 2570 2.027385 CAAGATTCCCTTAGGCTTGCC 58.973 52.381 2.97 2.97 32.86 4.52
1549 2571 1.298953 AGATTCCCTTAGGCTTGCCA 58.701 50.000 14.54 0.00 0.00 4.92
1550 2572 1.640670 AGATTCCCTTAGGCTTGCCAA 59.359 47.619 14.54 5.54 0.00 4.52
1551 2573 1.751351 GATTCCCTTAGGCTTGCCAAC 59.249 52.381 14.54 0.00 0.00 3.77
1552 2574 0.777446 TTCCCTTAGGCTTGCCAACT 59.223 50.000 14.54 0.00 0.00 3.16
1553 2575 0.777446 TCCCTTAGGCTTGCCAACTT 59.223 50.000 14.54 0.00 0.00 2.66
1554 2576 0.890683 CCCTTAGGCTTGCCAACTTG 59.109 55.000 14.54 0.00 0.00 3.16
1555 2577 1.620822 CCTTAGGCTTGCCAACTTGT 58.379 50.000 14.54 0.00 0.00 3.16
1556 2578 1.270550 CCTTAGGCTTGCCAACTTGTG 59.729 52.381 14.54 0.00 0.00 3.33
1568 2590 3.645884 CCAACTTGTGGCTCTCATTTTG 58.354 45.455 0.00 0.00 41.72 2.44
1569 2591 3.318839 CCAACTTGTGGCTCTCATTTTGA 59.681 43.478 0.00 0.00 41.72 2.69
1570 2592 4.021719 CCAACTTGTGGCTCTCATTTTGAT 60.022 41.667 0.00 0.00 41.72 2.57
1571 2593 4.778534 ACTTGTGGCTCTCATTTTGATG 57.221 40.909 0.00 0.00 0.00 3.07
1572 2594 4.401022 ACTTGTGGCTCTCATTTTGATGA 58.599 39.130 0.00 0.00 0.00 2.92
1573 2595 4.828939 ACTTGTGGCTCTCATTTTGATGAA 59.171 37.500 0.00 0.00 0.00 2.57
1574 2596 5.479375 ACTTGTGGCTCTCATTTTGATGAAT 59.521 36.000 0.00 0.00 0.00 2.57
1575 2597 5.988310 TGTGGCTCTCATTTTGATGAATT 57.012 34.783 0.00 0.00 0.00 2.17
1576 2598 7.177216 ACTTGTGGCTCTCATTTTGATGAATTA 59.823 33.333 0.00 0.00 0.00 1.40
1577 2599 7.465353 TGTGGCTCTCATTTTGATGAATTAA 57.535 32.000 0.00 0.00 0.00 1.40
1578 2600 7.315142 TGTGGCTCTCATTTTGATGAATTAAC 58.685 34.615 0.00 0.00 0.00 2.01
1579 2601 6.753744 GTGGCTCTCATTTTGATGAATTAACC 59.246 38.462 0.00 0.00 0.00 2.85
1580 2602 6.664816 TGGCTCTCATTTTGATGAATTAACCT 59.335 34.615 0.00 0.00 0.00 3.50
1581 2603 7.178983 TGGCTCTCATTTTGATGAATTAACCTT 59.821 33.333 0.00 0.00 0.00 3.50
1582 2604 8.686334 GGCTCTCATTTTGATGAATTAACCTTA 58.314 33.333 0.00 0.00 0.00 2.69
1583 2605 9.727627 GCTCTCATTTTGATGAATTAACCTTAG 57.272 33.333 0.00 0.00 0.00 2.18
1585 2607 8.686334 TCTCATTTTGATGAATTAACCTTAGGC 58.314 33.333 0.00 0.00 0.00 3.93
1586 2608 8.359875 TCATTTTGATGAATTAACCTTAGGCA 57.640 30.769 0.00 0.00 0.00 4.75
1587 2609 8.811017 TCATTTTGATGAATTAACCTTAGGCAA 58.189 29.630 0.00 0.00 0.00 4.52
1588 2610 9.090692 CATTTTGATGAATTAACCTTAGGCAAG 57.909 33.333 0.00 0.00 0.00 4.01
1589 2611 7.775053 TTTGATGAATTAACCTTAGGCAAGT 57.225 32.000 0.00 0.00 0.00 3.16
1590 2612 7.775053 TTGATGAATTAACCTTAGGCAAGTT 57.225 32.000 0.00 0.00 0.00 2.66
1591 2613 7.775053 TGATGAATTAACCTTAGGCAAGTTT 57.225 32.000 0.00 0.00 0.00 2.66
1592 2614 7.601856 TGATGAATTAACCTTAGGCAAGTTTG 58.398 34.615 0.00 0.00 0.00 2.93
1593 2615 6.339587 TGAATTAACCTTAGGCAAGTTTGG 57.660 37.500 0.00 0.00 0.00 3.28
1604 2626 2.825205 GCAAGTTTGGCAAGAATGTGT 58.175 42.857 0.00 0.00 0.00 3.72
1605 2627 2.540931 GCAAGTTTGGCAAGAATGTGTG 59.459 45.455 0.00 0.00 0.00 3.82
1606 2628 3.125316 CAAGTTTGGCAAGAATGTGTGG 58.875 45.455 0.00 0.00 0.00 4.17
1607 2629 1.069049 AGTTTGGCAAGAATGTGTGGC 59.931 47.619 0.00 0.00 40.55 5.01
1608 2630 4.595031 TGGCAAGAATGTGTGGCA 57.405 50.000 0.00 0.00 46.84 4.92
1609 2631 2.818111 TGGCAAGAATGTGTGGCAA 58.182 47.368 0.00 0.00 46.13 4.52
1610 2632 1.117994 TGGCAAGAATGTGTGGCAAA 58.882 45.000 0.00 0.00 46.13 3.68
1611 2633 1.068895 TGGCAAGAATGTGTGGCAAAG 59.931 47.619 0.00 0.00 46.13 2.77
1612 2634 1.069049 GGCAAGAATGTGTGGCAAAGT 59.931 47.619 0.00 0.00 39.93 2.66
1613 2635 2.295909 GGCAAGAATGTGTGGCAAAGTA 59.704 45.455 0.00 0.00 39.93 2.24
1614 2636 3.056607 GGCAAGAATGTGTGGCAAAGTAT 60.057 43.478 0.00 0.00 39.93 2.12
1615 2637 3.922240 GCAAGAATGTGTGGCAAAGTATG 59.078 43.478 0.00 0.00 0.00 2.39
1616 2638 4.487948 CAAGAATGTGTGGCAAAGTATGG 58.512 43.478 0.00 0.00 0.00 2.74
1627 2649 3.957468 GCAAAGTATGGCAATGCTAGTC 58.043 45.455 4.82 0.00 34.29 2.59
1628 2650 3.243201 GCAAAGTATGGCAATGCTAGTCC 60.243 47.826 4.82 0.00 34.29 3.85
1629 2651 4.202441 CAAAGTATGGCAATGCTAGTCCT 58.798 43.478 4.82 0.00 0.00 3.85
1630 2652 5.368145 CAAAGTATGGCAATGCTAGTCCTA 58.632 41.667 4.82 0.00 0.00 2.94
1631 2653 5.832539 AAGTATGGCAATGCTAGTCCTAT 57.167 39.130 4.82 0.00 0.00 2.57
1632 2654 6.935240 AAGTATGGCAATGCTAGTCCTATA 57.065 37.500 4.82 0.00 0.00 1.31
1633 2655 6.935240 AGTATGGCAATGCTAGTCCTATAA 57.065 37.500 4.82 0.00 0.00 0.98
1634 2656 6.702329 AGTATGGCAATGCTAGTCCTATAAC 58.298 40.000 4.82 0.00 0.00 1.89
1635 2657 4.351874 TGGCAATGCTAGTCCTATAACC 57.648 45.455 4.82 0.00 0.00 2.85
1636 2658 3.714280 TGGCAATGCTAGTCCTATAACCA 59.286 43.478 4.82 0.00 0.00 3.67
1637 2659 4.165180 TGGCAATGCTAGTCCTATAACCAA 59.835 41.667 4.82 0.00 0.00 3.67
1638 2660 5.130350 GGCAATGCTAGTCCTATAACCAAA 58.870 41.667 4.82 0.00 0.00 3.28
1639 2661 5.008712 GGCAATGCTAGTCCTATAACCAAAC 59.991 44.000 4.82 0.00 0.00 2.93
1640 2662 5.588648 GCAATGCTAGTCCTATAACCAAACA 59.411 40.000 0.00 0.00 0.00 2.83
1641 2663 6.238484 GCAATGCTAGTCCTATAACCAAACAG 60.238 42.308 0.00 0.00 0.00 3.16
1642 2664 4.766375 TGCTAGTCCTATAACCAAACAGC 58.234 43.478 0.00 0.00 0.00 4.40
1643 2665 4.127907 GCTAGTCCTATAACCAAACAGCC 58.872 47.826 0.00 0.00 0.00 4.85
1644 2666 3.646736 AGTCCTATAACCAAACAGCCC 57.353 47.619 0.00 0.00 0.00 5.19
1645 2667 2.241430 AGTCCTATAACCAAACAGCCCC 59.759 50.000 0.00 0.00 0.00 5.80
1667 2689 1.270907 AGTTCCTCGGAGCACTGATT 58.729 50.000 0.00 0.00 0.00 2.57
1693 2715 9.554395 TGTATAAAAAGAGAAGACATGTGTGAA 57.446 29.630 1.15 0.00 0.00 3.18
1710 2732 4.972440 GTGTGAATTCAAGAGAAAGTGCAC 59.028 41.667 10.35 9.40 37.29 4.57
1724 2768 3.111853 AGTGCACGAAGAAACATCTGA 57.888 42.857 12.01 0.00 0.00 3.27
1725 2769 3.466836 AGTGCACGAAGAAACATCTGAA 58.533 40.909 12.01 0.00 0.00 3.02
1726 2770 4.067896 AGTGCACGAAGAAACATCTGAAT 58.932 39.130 12.01 0.00 0.00 2.57
1727 2771 4.153117 AGTGCACGAAGAAACATCTGAATC 59.847 41.667 12.01 0.00 0.00 2.52
1728 2772 4.153117 GTGCACGAAGAAACATCTGAATCT 59.847 41.667 0.00 0.00 0.00 2.40
1729 2773 4.756642 TGCACGAAGAAACATCTGAATCTT 59.243 37.500 0.00 0.00 34.96 2.40
1730 2774 5.239306 TGCACGAAGAAACATCTGAATCTTT 59.761 36.000 0.00 0.00 32.54 2.52
1731 2775 6.145535 GCACGAAGAAACATCTGAATCTTTT 58.854 36.000 0.00 0.00 32.54 2.27
1732 2776 6.638468 GCACGAAGAAACATCTGAATCTTTTT 59.362 34.615 0.00 0.00 32.54 1.94
1733 2777 7.357859 GCACGAAGAAACATCTGAATCTTTTTG 60.358 37.037 0.00 0.00 32.54 2.44
1734 2778 7.857389 CACGAAGAAACATCTGAATCTTTTTGA 59.143 33.333 0.00 0.00 32.54 2.69
1735 2779 8.072567 ACGAAGAAACATCTGAATCTTTTTGAG 58.927 33.333 0.00 0.00 32.54 3.02
1736 2780 8.072567 CGAAGAAACATCTGAATCTTTTTGAGT 58.927 33.333 0.00 0.00 32.54 3.41
1737 2781 9.741647 GAAGAAACATCTGAATCTTTTTGAGTT 57.258 29.630 0.00 0.00 32.54 3.01
1738 2782 9.525409 AAGAAACATCTGAATCTTTTTGAGTTG 57.475 29.630 0.00 0.00 0.00 3.16
1739 2783 7.650903 AGAAACATCTGAATCTTTTTGAGTTGC 59.349 33.333 0.00 0.00 0.00 4.17
1740 2784 6.645790 ACATCTGAATCTTTTTGAGTTGCT 57.354 33.333 0.00 0.00 0.00 3.91
1741 2785 7.750229 ACATCTGAATCTTTTTGAGTTGCTA 57.250 32.000 0.00 0.00 0.00 3.49
1742 2786 7.588512 ACATCTGAATCTTTTTGAGTTGCTAC 58.411 34.615 0.00 0.00 0.00 3.58
1743 2787 7.229306 ACATCTGAATCTTTTTGAGTTGCTACA 59.771 33.333 0.13 0.00 0.00 2.74
1744 2788 7.750229 TCTGAATCTTTTTGAGTTGCTACAT 57.250 32.000 0.13 0.00 0.00 2.29
1745 2789 7.587629 TCTGAATCTTTTTGAGTTGCTACATG 58.412 34.615 0.13 0.00 0.00 3.21
1746 2790 7.229306 TCTGAATCTTTTTGAGTTGCTACATGT 59.771 33.333 2.69 2.69 0.00 3.21
1839 2898 9.561270 CTGTATCGTGGAATATTACTATCAGTG 57.439 37.037 0.00 0.00 0.00 3.66
1840 2899 8.520351 TGTATCGTGGAATATTACTATCAGTGG 58.480 37.037 0.00 0.00 0.00 4.00
1841 2900 5.779922 TCGTGGAATATTACTATCAGTGGC 58.220 41.667 0.00 0.00 0.00 5.01
1842 2901 4.621460 CGTGGAATATTACTATCAGTGGCG 59.379 45.833 0.00 0.00 0.00 5.69
1843 2902 4.929808 GTGGAATATTACTATCAGTGGCGG 59.070 45.833 0.00 0.00 0.00 6.13
1844 2903 4.836175 TGGAATATTACTATCAGTGGCGGA 59.164 41.667 0.00 0.00 0.00 5.54
1845 2904 5.047306 TGGAATATTACTATCAGTGGCGGAG 60.047 44.000 0.00 0.00 0.00 4.63
1858 2917 3.211288 CGGAGCCAGGATTCGAGT 58.789 61.111 0.00 0.00 0.00 4.18
1859 2918 2.415825 CGGAGCCAGGATTCGAGTA 58.584 57.895 0.00 0.00 0.00 2.59
1860 2919 0.962489 CGGAGCCAGGATTCGAGTAT 59.038 55.000 0.00 0.00 0.00 2.12
1861 2920 2.160205 CGGAGCCAGGATTCGAGTATA 58.840 52.381 0.00 0.00 0.00 1.47
1862 2921 2.162608 CGGAGCCAGGATTCGAGTATAG 59.837 54.545 0.00 0.00 0.00 1.31
1863 2922 2.494073 GGAGCCAGGATTCGAGTATAGG 59.506 54.545 0.00 0.00 0.00 2.57
1864 2923 3.422796 GAGCCAGGATTCGAGTATAGGA 58.577 50.000 0.00 0.00 0.00 2.94
1865 2924 3.426615 AGCCAGGATTCGAGTATAGGAG 58.573 50.000 0.00 0.00 0.00 3.69
1866 2925 2.494073 GCCAGGATTCGAGTATAGGAGG 59.506 54.545 0.00 0.00 0.00 4.30
1867 2926 3.093057 CCAGGATTCGAGTATAGGAGGG 58.907 54.545 0.00 0.00 0.00 4.30
1868 2927 3.093057 CAGGATTCGAGTATAGGAGGGG 58.907 54.545 0.00 0.00 0.00 4.79
1869 2928 1.826096 GGATTCGAGTATAGGAGGGGC 59.174 57.143 0.00 0.00 0.00 5.80
1870 2929 1.826096 GATTCGAGTATAGGAGGGGCC 59.174 57.143 0.00 0.00 0.00 5.80
1871 2930 0.538977 TTCGAGTATAGGAGGGGCCG 60.539 60.000 0.00 0.00 43.43 6.13
1872 2931 1.074423 CGAGTATAGGAGGGGCCGA 59.926 63.158 0.00 0.00 43.43 5.54
1873 2932 0.961358 CGAGTATAGGAGGGGCCGAG 60.961 65.000 0.00 0.00 43.43 4.63
1874 2933 0.112801 GAGTATAGGAGGGGCCGAGT 59.887 60.000 0.00 0.00 43.43 4.18
1875 2934 1.353694 GAGTATAGGAGGGGCCGAGTA 59.646 57.143 0.00 0.00 43.43 2.59
1876 2935 1.075212 AGTATAGGAGGGGCCGAGTAC 59.925 57.143 0.00 0.00 43.43 2.73
1877 2936 0.037303 TATAGGAGGGGCCGAGTACG 59.963 60.000 0.00 0.00 43.43 3.67
1878 2937 2.004408 ATAGGAGGGGCCGAGTACGT 62.004 60.000 0.00 0.00 43.43 3.57
1879 2938 1.344953 TAGGAGGGGCCGAGTACGTA 61.345 60.000 0.00 0.00 43.43 3.57
1880 2939 1.530183 GGAGGGGCCGAGTACGTAT 60.530 63.158 0.00 0.00 37.88 3.06
1881 2940 0.250901 GGAGGGGCCGAGTACGTATA 60.251 60.000 0.00 0.00 37.88 1.47
1882 2941 1.615384 GGAGGGGCCGAGTACGTATAT 60.615 57.143 0.00 0.00 37.88 0.86
1883 2942 2.165998 GAGGGGCCGAGTACGTATATT 58.834 52.381 0.00 0.00 37.88 1.28
1884 2943 1.891150 AGGGGCCGAGTACGTATATTG 59.109 52.381 0.00 0.00 37.88 1.90
1885 2944 1.888512 GGGGCCGAGTACGTATATTGA 59.111 52.381 0.00 0.00 37.88 2.57
1886 2945 2.494870 GGGGCCGAGTACGTATATTGAT 59.505 50.000 0.00 0.00 37.88 2.57
1887 2946 3.428589 GGGGCCGAGTACGTATATTGATC 60.429 52.174 0.00 0.00 37.88 2.92
1888 2947 3.442977 GGGCCGAGTACGTATATTGATCT 59.557 47.826 0.00 0.00 37.88 2.75
1889 2948 4.637534 GGGCCGAGTACGTATATTGATCTA 59.362 45.833 0.00 0.00 37.88 1.98
1890 2949 5.124457 GGGCCGAGTACGTATATTGATCTAA 59.876 44.000 0.00 0.00 37.88 2.10
1891 2950 6.183360 GGGCCGAGTACGTATATTGATCTAAT 60.183 42.308 0.00 0.00 37.88 1.73
1892 2951 6.911511 GGCCGAGTACGTATATTGATCTAATC 59.088 42.308 0.00 0.00 37.88 1.75
1893 2952 7.201714 GGCCGAGTACGTATATTGATCTAATCT 60.202 40.741 0.00 0.00 37.88 2.40
1894 2953 8.182881 GCCGAGTACGTATATTGATCTAATCTT 58.817 37.037 0.00 0.00 37.88 2.40
1895 2954 9.491934 CCGAGTACGTATATTGATCTAATCTTG 57.508 37.037 0.00 0.00 37.88 3.02
1914 2973 7.596749 ATCTTGTTGGTAATTACTCTTGTCG 57.403 36.000 15.05 0.47 0.00 4.35
1915 2974 6.751157 TCTTGTTGGTAATTACTCTTGTCGA 58.249 36.000 15.05 2.60 0.00 4.20
1916 2975 7.383687 TCTTGTTGGTAATTACTCTTGTCGAT 58.616 34.615 15.05 0.00 0.00 3.59
1917 2976 7.544566 TCTTGTTGGTAATTACTCTTGTCGATC 59.455 37.037 15.05 0.00 0.00 3.69
1918 2977 5.803461 TGTTGGTAATTACTCTTGTCGATCG 59.197 40.000 15.05 9.36 0.00 3.69
1919 2978 5.823209 TGGTAATTACTCTTGTCGATCGA 57.177 39.130 15.15 15.15 0.00 3.59
1920 2979 6.387041 TGGTAATTACTCTTGTCGATCGAT 57.613 37.500 22.50 6.48 0.00 3.59
1921 2980 6.802608 TGGTAATTACTCTTGTCGATCGATT 58.197 36.000 22.50 10.37 0.00 3.34
1922 2981 7.933396 TGGTAATTACTCTTGTCGATCGATTA 58.067 34.615 22.50 10.98 0.00 1.75
1923 2982 7.859377 TGGTAATTACTCTTGTCGATCGATTAC 59.141 37.037 22.50 19.48 0.00 1.89
1924 2983 8.074972 GGTAATTACTCTTGTCGATCGATTACT 58.925 37.037 22.50 4.79 31.54 2.24
1925 2984 9.105206 GTAATTACTCTTGTCGATCGATTACTC 57.895 37.037 22.50 8.45 0.00 2.59
1926 2985 6.922247 TTACTCTTGTCGATCGATTACTCT 57.078 37.500 22.50 5.85 0.00 3.24
1927 2986 5.821516 ACTCTTGTCGATCGATTACTCTT 57.178 39.130 22.50 0.61 0.00 2.85
1928 2987 5.574082 ACTCTTGTCGATCGATTACTCTTG 58.426 41.667 22.50 9.43 0.00 3.02
1929 2988 5.124138 ACTCTTGTCGATCGATTACTCTTGT 59.876 40.000 22.50 10.02 0.00 3.16
1930 2989 5.570344 TCTTGTCGATCGATTACTCTTGTC 58.430 41.667 22.50 4.57 0.00 3.18
1931 2990 3.936661 TGTCGATCGATTACTCTTGTCG 58.063 45.455 22.50 0.00 36.75 4.35
2250 3309 2.111251 GGCTCCGCCCCTGATTAC 59.889 66.667 0.00 0.00 44.06 1.89
2251 3310 2.444256 GGCTCCGCCCCTGATTACT 61.444 63.158 0.00 0.00 44.06 2.24
2252 3311 1.119574 GGCTCCGCCCCTGATTACTA 61.120 60.000 0.00 0.00 44.06 1.82
2253 3312 0.977395 GCTCCGCCCCTGATTACTAT 59.023 55.000 0.00 0.00 0.00 2.12
2254 3313 1.066787 GCTCCGCCCCTGATTACTATC 60.067 57.143 0.00 0.00 0.00 2.08
2255 3314 2.248248 CTCCGCCCCTGATTACTATCA 58.752 52.381 0.00 0.00 38.45 2.15
2293 3352 7.706607 GCAGGAAAAATAACAAGTTCAGTCTTT 59.293 33.333 0.00 0.00 0.00 2.52
2301 3360 5.888982 ACAAGTTCAGTCTTTCCTTCCTA 57.111 39.130 0.00 0.00 0.00 2.94
2305 3365 8.437575 ACAAGTTCAGTCTTTCCTTCCTATTTA 58.562 33.333 0.00 0.00 0.00 1.40
2359 3419 0.390492 AAGAAAGCAGCCTGTTTGCC 59.610 50.000 0.00 0.00 42.48 4.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 69 1.949525 ACAAACAGAACTCGCAAGCAT 59.050 42.857 0.00 0.00 37.18 3.79
70 71 2.111756 CAACAAACAGAACTCGCAAGC 58.888 47.619 0.00 0.00 37.18 4.01
111 298 4.552767 GGCAGTTATGTACAGCTAAATGCG 60.553 45.833 24.19 3.80 45.13 4.73
159 346 5.432885 CATGCATGCTGATCACTTAATCA 57.567 39.130 20.33 0.00 34.55 2.57
203 402 7.558081 AGTTACTATTGTCAGACTGCATCTCTA 59.442 37.037 1.31 0.00 34.41 2.43
220 419 7.555554 AGCATCTGAGCAAATGAAGTTACTATT 59.444 33.333 0.00 0.00 36.85 1.73
221 420 7.052873 AGCATCTGAGCAAATGAAGTTACTAT 58.947 34.615 0.00 0.00 36.85 2.12
222 421 6.409704 AGCATCTGAGCAAATGAAGTTACTA 58.590 36.000 0.00 0.00 36.85 1.82
250 452 0.305922 GAGCCATTCTCCGCAATTCG 59.694 55.000 0.00 0.00 35.77 3.34
258 460 3.778618 GCTGAAAAATGAGCCATTCTCC 58.221 45.455 1.57 0.00 41.18 3.71
286 488 1.470979 GCCTGGTACGGTATGTGTCAG 60.471 57.143 0.00 0.00 34.07 3.51
296 498 2.413310 AATACTTTGGCCTGGTACGG 57.587 50.000 3.32 0.00 0.00 4.02
341 544 4.030314 ACTGATGATGGGCATTATGGAG 57.970 45.455 0.00 0.00 37.34 3.86
411 614 2.037121 TCACAGAATTGGTTGCTCTCGA 59.963 45.455 0.00 0.00 0.00 4.04
515 725 1.202099 TTGGGTATGTCGCCCCTTCA 61.202 55.000 0.00 0.00 45.49 3.02
572 1549 2.363680 ACGGATTCGCATCTTCAGAGAT 59.636 45.455 0.00 0.00 40.40 2.75
600 1577 2.753452 TCATCCCTCTGTCGTTGTCTAC 59.247 50.000 0.00 0.00 0.00 2.59
604 1581 2.355108 CCAATCATCCCTCTGTCGTTGT 60.355 50.000 0.00 0.00 0.00 3.32
609 1586 3.906846 AGTATCCCAATCATCCCTCTGTC 59.093 47.826 0.00 0.00 0.00 3.51
642 1621 3.567397 ACTCCACTAAGCCTCGATACAT 58.433 45.455 0.00 0.00 0.00 2.29
648 1627 1.133407 GACTGACTCCACTAAGCCTCG 59.867 57.143 0.00 0.00 0.00 4.63
689 1669 4.864247 GCTTGATGTTGTTGTTCAGTTGTT 59.136 37.500 0.00 0.00 0.00 2.83
690 1670 4.423732 GCTTGATGTTGTTGTTCAGTTGT 58.576 39.130 0.00 0.00 0.00 3.32
691 1671 3.483196 CGCTTGATGTTGTTGTTCAGTTG 59.517 43.478 0.00 0.00 0.00 3.16
692 1672 3.489059 CCGCTTGATGTTGTTGTTCAGTT 60.489 43.478 0.00 0.00 0.00 3.16
693 1673 2.033299 CCGCTTGATGTTGTTGTTCAGT 59.967 45.455 0.00 0.00 0.00 3.41
694 1674 2.653890 CCGCTTGATGTTGTTGTTCAG 58.346 47.619 0.00 0.00 0.00 3.02
728 1735 6.036470 GCTATGCCCAAAATGAAAGTAACTC 58.964 40.000 0.00 0.00 0.00 3.01
849 1857 3.580895 AGTTTTTGGAGTTTTGGGTGTGT 59.419 39.130 0.00 0.00 0.00 3.72
957 1967 0.473755 TCCTGAGCTTGAGCCAACAA 59.526 50.000 0.00 0.00 43.38 2.83
959 1969 0.676151 CCTCCTGAGCTTGAGCCAAC 60.676 60.000 0.00 0.00 43.38 3.77
1153 2171 5.422012 TGAAGTATGTCATGGCTCTTCTGTA 59.578 40.000 21.18 7.76 34.37 2.74
1323 2341 5.748402 TGTGCATGACCTAAATGAGAGAAT 58.252 37.500 0.00 0.00 0.00 2.40
1340 2358 1.069204 CCTAGGCAGACGTATGTGCAT 59.931 52.381 12.41 10.41 46.89 3.96
1366 2385 3.871485 ACAGCCTCTTAAGCATTCAGAG 58.129 45.455 0.00 0.00 44.12 3.35
1373 2395 2.656947 ACCAAACAGCCTCTTAAGCA 57.343 45.000 0.00 0.00 0.00 3.91
1377 2399 3.630312 GTCACAAACCAAACAGCCTCTTA 59.370 43.478 0.00 0.00 0.00 2.10
1378 2400 2.427095 GTCACAAACCAAACAGCCTCTT 59.573 45.455 0.00 0.00 0.00 2.85
1379 2401 2.024414 GTCACAAACCAAACAGCCTCT 58.976 47.619 0.00 0.00 0.00 3.69
1380 2402 2.024414 AGTCACAAACCAAACAGCCTC 58.976 47.619 0.00 0.00 0.00 4.70
1381 2403 2.143876 AGTCACAAACCAAACAGCCT 57.856 45.000 0.00 0.00 0.00 4.58
1382 2404 3.380320 AGTTAGTCACAAACCAAACAGCC 59.620 43.478 0.00 0.00 30.35 4.85
1383 2405 4.632538 AGTTAGTCACAAACCAAACAGC 57.367 40.909 0.00 0.00 30.35 4.40
1384 2406 5.288472 GCAAAGTTAGTCACAAACCAAACAG 59.712 40.000 0.00 0.00 30.35 3.16
1385 2407 5.164954 GCAAAGTTAGTCACAAACCAAACA 58.835 37.500 0.00 0.00 30.35 2.83
1386 2408 4.565166 GGCAAAGTTAGTCACAAACCAAAC 59.435 41.667 0.00 0.00 0.00 2.93
1387 2409 4.220821 TGGCAAAGTTAGTCACAAACCAAA 59.779 37.500 0.00 0.00 0.00 3.28
1388 2410 3.764434 TGGCAAAGTTAGTCACAAACCAA 59.236 39.130 0.00 0.00 0.00 3.67
1389 2411 3.357203 TGGCAAAGTTAGTCACAAACCA 58.643 40.909 0.00 0.00 0.00 3.67
1390 2412 4.379339 TTGGCAAAGTTAGTCACAAACC 57.621 40.909 0.00 0.00 0.00 3.27
1391 2413 5.646606 TCTTTGGCAAAGTTAGTCACAAAC 58.353 37.500 32.46 0.00 39.52 2.93
1392 2414 5.906113 TCTTTGGCAAAGTTAGTCACAAA 57.094 34.783 32.46 12.18 39.52 2.83
1393 2415 6.272318 CAATCTTTGGCAAAGTTAGTCACAA 58.728 36.000 32.46 15.37 39.52 3.33
1394 2416 5.735922 GCAATCTTTGGCAAAGTTAGTCACA 60.736 40.000 32.46 16.01 39.52 3.58
1395 2417 4.681483 GCAATCTTTGGCAAAGTTAGTCAC 59.319 41.667 32.46 16.68 39.52 3.67
1396 2418 4.870363 GCAATCTTTGGCAAAGTTAGTCA 58.130 39.130 32.46 17.32 39.52 3.41
1408 2430 2.493278 CCTTAGGTGTGGCAATCTTTGG 59.507 50.000 0.00 0.00 0.00 3.28
1409 2431 3.157087 ACCTTAGGTGTGGCAATCTTTG 58.843 45.455 1.74 0.00 32.98 2.77
1410 2432 3.525800 ACCTTAGGTGTGGCAATCTTT 57.474 42.857 1.74 0.00 32.98 2.52
1411 2433 3.525800 AACCTTAGGTGTGGCAATCTT 57.474 42.857 3.99 0.00 35.34 2.40
1412 2434 3.054361 CCTAACCTTAGGTGTGGCAATCT 60.054 47.826 3.99 0.00 44.26 2.40
1413 2435 3.279434 CCTAACCTTAGGTGTGGCAATC 58.721 50.000 3.99 0.00 44.26 2.67
1414 2436 3.366052 CCTAACCTTAGGTGTGGCAAT 57.634 47.619 3.99 0.00 44.26 3.56
1415 2437 2.871096 CCTAACCTTAGGTGTGGCAA 57.129 50.000 3.99 0.00 44.26 4.52
1424 2446 2.492088 GGCCAAACTTGCCTAACCTTAG 59.508 50.000 0.00 0.00 45.70 2.18
1425 2447 2.521126 GGCCAAACTTGCCTAACCTTA 58.479 47.619 0.00 0.00 45.70 2.69
1426 2448 1.338107 GGCCAAACTTGCCTAACCTT 58.662 50.000 0.00 0.00 45.70 3.50
1427 2449 3.051617 GGCCAAACTTGCCTAACCT 57.948 52.632 0.00 0.00 45.70 3.50
1438 2460 2.293399 CACTCACCTAAGTTGGCCAAAC 59.707 50.000 22.47 14.58 39.24 2.93
1439 2461 2.092103 ACACTCACCTAAGTTGGCCAAA 60.092 45.455 22.47 3.50 0.00 3.28
1440 2462 1.493022 ACACTCACCTAAGTTGGCCAA 59.507 47.619 16.05 16.05 0.00 4.52
1441 2463 1.136828 ACACTCACCTAAGTTGGCCA 58.863 50.000 0.00 0.00 0.00 5.36
1442 2464 2.271944 AACACTCACCTAAGTTGGCC 57.728 50.000 0.00 0.00 0.00 5.36
1443 2465 2.293399 CCAAACACTCACCTAAGTTGGC 59.707 50.000 0.00 0.00 0.00 4.52
1444 2466 3.551846 ACCAAACACTCACCTAAGTTGG 58.448 45.455 0.00 0.00 0.00 3.77
1445 2467 4.638421 TGAACCAAACACTCACCTAAGTTG 59.362 41.667 0.00 0.00 0.00 3.16
1446 2468 4.850680 TGAACCAAACACTCACCTAAGTT 58.149 39.130 0.00 0.00 0.00 2.66
1447 2469 4.497291 TGAACCAAACACTCACCTAAGT 57.503 40.909 0.00 0.00 0.00 2.24
1448 2470 4.261197 GCTTGAACCAAACACTCACCTAAG 60.261 45.833 0.00 0.00 0.00 2.18
1449 2471 3.630312 GCTTGAACCAAACACTCACCTAA 59.370 43.478 0.00 0.00 0.00 2.69
1450 2472 3.211045 GCTTGAACCAAACACTCACCTA 58.789 45.455 0.00 0.00 0.00 3.08
1451 2473 2.024414 GCTTGAACCAAACACTCACCT 58.976 47.619 0.00 0.00 0.00 4.00
1452 2474 1.067060 GGCTTGAACCAAACACTCACC 59.933 52.381 0.00 0.00 0.00 4.02
1453 2475 1.748493 TGGCTTGAACCAAACACTCAC 59.252 47.619 0.00 0.00 36.55 3.51
1454 2476 1.748493 GTGGCTTGAACCAAACACTCA 59.252 47.619 0.00 0.00 42.70 3.41
1455 2477 1.748493 TGTGGCTTGAACCAAACACTC 59.252 47.619 12.25 0.00 42.70 3.51
1456 2478 1.476488 GTGTGGCTTGAACCAAACACT 59.524 47.619 0.00 0.00 45.87 3.55
1457 2479 1.921243 GTGTGGCTTGAACCAAACAC 58.079 50.000 0.00 0.00 45.87 3.32
1459 2481 1.111277 AGGTGTGGCTTGAACCAAAC 58.889 50.000 0.00 0.00 45.86 2.93
1460 2482 1.859302 AAGGTGTGGCTTGAACCAAA 58.141 45.000 0.00 0.00 42.70 3.28
1461 2483 2.582052 CTAAGGTGTGGCTTGAACCAA 58.418 47.619 0.00 0.00 42.70 3.67
1462 2484 1.202879 CCTAAGGTGTGGCTTGAACCA 60.203 52.381 0.00 0.00 36.37 3.67
1463 2485 1.534729 CCTAAGGTGTGGCTTGAACC 58.465 55.000 0.00 0.00 0.00 3.62
1464 2486 0.881796 GCCTAAGGTGTGGCTTGAAC 59.118 55.000 0.00 0.00 45.26 3.18
1465 2487 3.339547 GCCTAAGGTGTGGCTTGAA 57.660 52.632 0.00 0.00 45.26 2.69
1471 2493 1.074775 TGGCTTGCCTAAGGTGTGG 59.925 57.895 13.18 0.00 34.40 4.17
1472 2494 0.537143 TGTGGCTTGCCTAAGGTGTG 60.537 55.000 13.18 0.00 34.40 3.82
1473 2495 0.537371 GTGTGGCTTGCCTAAGGTGT 60.537 55.000 13.18 0.00 34.40 4.16
1474 2496 0.250901 AGTGTGGCTTGCCTAAGGTG 60.251 55.000 13.18 0.00 34.40 4.00
1475 2497 0.478507 AAGTGTGGCTTGCCTAAGGT 59.521 50.000 13.18 0.00 35.80 3.50
1476 2498 0.883833 CAAGTGTGGCTTGCCTAAGG 59.116 55.000 13.18 0.00 46.68 2.69
1487 2509 2.123939 TGTGGGGCACAAGTGTGG 60.124 61.111 13.10 0.00 45.72 4.17
1498 2520 0.323269 TGTGTGTATGCCATGTGGGG 60.323 55.000 0.54 0.00 37.04 4.96
1499 2521 1.543607 TTGTGTGTATGCCATGTGGG 58.456 50.000 0.54 0.00 40.85 4.61
1500 2522 3.657015 TTTTGTGTGTATGCCATGTGG 57.343 42.857 0.00 0.00 38.53 4.17
1501 2523 4.445052 CACTTTTTGTGTGTATGCCATGTG 59.555 41.667 0.00 0.00 41.53 3.21
1502 2524 4.619973 CACTTTTTGTGTGTATGCCATGT 58.380 39.130 0.00 0.00 41.53 3.21
1514 2536 8.796649 AAGGGAATCTTGCCACACTTTTTGTG 62.797 42.308 3.19 0.00 43.76 3.33
1515 2537 3.181466 GGGAATCTTGCCACACTTTTTGT 60.181 43.478 0.00 0.00 39.97 2.83
1516 2538 3.070015 AGGGAATCTTGCCACACTTTTTG 59.930 43.478 3.19 0.00 41.75 2.44
1517 2539 3.308401 AGGGAATCTTGCCACACTTTTT 58.692 40.909 3.19 0.00 41.75 1.94
1518 2540 2.962859 AGGGAATCTTGCCACACTTTT 58.037 42.857 3.19 0.00 41.75 2.27
1519 2541 2.683211 AGGGAATCTTGCCACACTTT 57.317 45.000 3.19 0.00 41.75 2.66
1520 2542 2.683211 AAGGGAATCTTGCCACACTT 57.317 45.000 3.19 0.00 41.75 3.16
1521 2543 2.025887 CCTAAGGGAATCTTGCCACACT 60.026 50.000 3.19 0.00 41.75 3.55
1522 2544 2.369394 CCTAAGGGAATCTTGCCACAC 58.631 52.381 3.19 0.00 41.75 3.82
1523 2545 1.340991 GCCTAAGGGAATCTTGCCACA 60.341 52.381 3.19 0.00 41.75 4.17
1524 2546 1.064389 AGCCTAAGGGAATCTTGCCAC 60.064 52.381 3.19 0.00 41.75 5.01
1525 2547 1.298953 AGCCTAAGGGAATCTTGCCA 58.701 50.000 3.19 0.00 41.75 4.92
1526 2548 2.027385 CAAGCCTAAGGGAATCTTGCC 58.973 52.381 0.00 0.00 39.23 4.52
1527 2549 1.406898 GCAAGCCTAAGGGAATCTTGC 59.593 52.381 13.14 13.14 43.47 4.01
1528 2550 2.027385 GGCAAGCCTAAGGGAATCTTG 58.973 52.381 3.29 0.00 36.93 3.02
1529 2551 1.640670 TGGCAAGCCTAAGGGAATCTT 59.359 47.619 12.96 0.00 39.40 2.40
1530 2552 1.298953 TGGCAAGCCTAAGGGAATCT 58.701 50.000 12.96 0.00 36.94 2.40
1531 2553 1.751351 GTTGGCAAGCCTAAGGGAATC 59.249 52.381 12.96 0.00 36.94 2.52
1532 2554 1.359130 AGTTGGCAAGCCTAAGGGAAT 59.641 47.619 12.96 0.00 36.94 3.01
1533 2555 0.777446 AGTTGGCAAGCCTAAGGGAA 59.223 50.000 12.96 0.00 36.94 3.97
1534 2556 0.777446 AAGTTGGCAAGCCTAAGGGA 59.223 50.000 12.96 0.00 36.94 4.20
1535 2557 0.890683 CAAGTTGGCAAGCCTAAGGG 59.109 55.000 12.96 0.00 36.94 3.95
1536 2558 1.270550 CACAAGTTGGCAAGCCTAAGG 59.729 52.381 12.96 0.79 36.94 2.69
1537 2559 1.270550 CCACAAGTTGGCAAGCCTAAG 59.729 52.381 12.96 1.51 39.07 2.18
1538 2560 1.327303 CCACAAGTTGGCAAGCCTAA 58.673 50.000 12.96 2.46 39.07 2.69
1539 2561 3.034924 CCACAAGTTGGCAAGCCTA 57.965 52.632 12.96 1.22 39.07 3.93
1540 2562 3.860681 CCACAAGTTGGCAAGCCT 58.139 55.556 12.96 0.00 39.07 4.58
1547 2569 6.076490 CATCAAAATGAGAGCCACAAGTTGG 61.076 44.000 7.96 0.00 40.99 3.77
1548 2570 4.572985 TCAAAATGAGAGCCACAAGTTG 57.427 40.909 0.00 0.00 0.00 3.16
1549 2571 4.828939 TCATCAAAATGAGAGCCACAAGTT 59.171 37.500 0.00 0.00 36.98 2.66
1550 2572 4.401022 TCATCAAAATGAGAGCCACAAGT 58.599 39.130 0.00 0.00 36.98 3.16
1551 2573 5.381174 TTCATCAAAATGAGAGCCACAAG 57.619 39.130 0.00 0.00 42.72 3.16
1552 2574 5.988310 ATTCATCAAAATGAGAGCCACAA 57.012 34.783 0.00 0.00 42.72 3.33
1553 2575 5.988310 AATTCATCAAAATGAGAGCCACA 57.012 34.783 0.00 0.00 42.72 4.17
1554 2576 6.753744 GGTTAATTCATCAAAATGAGAGCCAC 59.246 38.462 0.00 0.00 42.72 5.01
1555 2577 6.664816 AGGTTAATTCATCAAAATGAGAGCCA 59.335 34.615 0.00 0.00 42.72 4.75
1556 2578 7.105241 AGGTTAATTCATCAAAATGAGAGCC 57.895 36.000 0.00 0.00 42.72 4.70
1557 2579 9.727627 CTAAGGTTAATTCATCAAAATGAGAGC 57.272 33.333 0.00 0.00 42.72 4.09
1559 2581 8.686334 GCCTAAGGTTAATTCATCAAAATGAGA 58.314 33.333 0.00 0.00 42.72 3.27
1560 2582 8.469200 TGCCTAAGGTTAATTCATCAAAATGAG 58.531 33.333 0.00 0.00 42.72 2.90
1561 2583 8.359875 TGCCTAAGGTTAATTCATCAAAATGA 57.640 30.769 0.00 0.00 40.18 2.57
1562 2584 9.090692 CTTGCCTAAGGTTAATTCATCAAAATG 57.909 33.333 0.00 0.00 0.00 2.32
1563 2585 8.815912 ACTTGCCTAAGGTTAATTCATCAAAAT 58.184 29.630 0.00 0.00 38.26 1.82
1564 2586 8.189119 ACTTGCCTAAGGTTAATTCATCAAAA 57.811 30.769 0.00 0.00 38.26 2.44
1565 2587 7.775053 ACTTGCCTAAGGTTAATTCATCAAA 57.225 32.000 0.00 0.00 38.26 2.69
1566 2588 7.775053 AACTTGCCTAAGGTTAATTCATCAA 57.225 32.000 0.00 0.00 38.26 2.57
1567 2589 7.309744 CCAAACTTGCCTAAGGTTAATTCATCA 60.310 37.037 0.00 0.00 41.80 3.07
1568 2590 7.035612 CCAAACTTGCCTAAGGTTAATTCATC 58.964 38.462 0.00 0.00 41.80 2.92
1569 2591 6.574269 GCCAAACTTGCCTAAGGTTAATTCAT 60.574 38.462 0.00 0.00 41.80 2.57
1570 2592 5.279256 GCCAAACTTGCCTAAGGTTAATTCA 60.279 40.000 0.00 0.00 41.80 2.57
1571 2593 5.168569 GCCAAACTTGCCTAAGGTTAATTC 58.831 41.667 0.00 0.00 41.80 2.17
1572 2594 4.591072 TGCCAAACTTGCCTAAGGTTAATT 59.409 37.500 0.00 0.00 41.80 1.40
1573 2595 4.156477 TGCCAAACTTGCCTAAGGTTAAT 58.844 39.130 0.00 0.00 41.80 1.40
1574 2596 3.567397 TGCCAAACTTGCCTAAGGTTAA 58.433 40.909 0.00 0.00 41.80 2.01
1575 2597 3.231207 TGCCAAACTTGCCTAAGGTTA 57.769 42.857 0.00 0.00 41.80 2.85
1576 2598 2.080654 TGCCAAACTTGCCTAAGGTT 57.919 45.000 0.00 0.00 44.49 3.50
1577 2599 1.963515 CTTGCCAAACTTGCCTAAGGT 59.036 47.619 0.00 0.00 38.26 3.50
1578 2600 2.238521 TCTTGCCAAACTTGCCTAAGG 58.761 47.619 0.00 0.00 38.26 2.69
1579 2601 4.240096 CATTCTTGCCAAACTTGCCTAAG 58.760 43.478 0.00 0.00 39.86 2.18
1580 2602 3.640967 ACATTCTTGCCAAACTTGCCTAA 59.359 39.130 0.00 0.00 0.00 2.69
1581 2603 3.005684 CACATTCTTGCCAAACTTGCCTA 59.994 43.478 0.00 0.00 0.00 3.93
1582 2604 2.041701 ACATTCTTGCCAAACTTGCCT 58.958 42.857 0.00 0.00 0.00 4.75
1583 2605 2.137523 CACATTCTTGCCAAACTTGCC 58.862 47.619 0.00 0.00 0.00 4.52
1584 2606 2.540931 CACACATTCTTGCCAAACTTGC 59.459 45.455 0.00 0.00 0.00 4.01
1585 2607 3.125316 CCACACATTCTTGCCAAACTTG 58.875 45.455 0.00 0.00 0.00 3.16
1586 2608 2.483538 GCCACACATTCTTGCCAAACTT 60.484 45.455 0.00 0.00 0.00 2.66
1587 2609 1.069049 GCCACACATTCTTGCCAAACT 59.931 47.619 0.00 0.00 0.00 2.66
1588 2610 1.202510 TGCCACACATTCTTGCCAAAC 60.203 47.619 0.00 0.00 0.00 2.93
1589 2611 1.117994 TGCCACACATTCTTGCCAAA 58.882 45.000 0.00 0.00 0.00 3.28
1590 2612 1.117994 TTGCCACACATTCTTGCCAA 58.882 45.000 0.00 0.00 0.00 4.52
1591 2613 1.068895 CTTTGCCACACATTCTTGCCA 59.931 47.619 0.00 0.00 0.00 4.92
1592 2614 1.069049 ACTTTGCCACACATTCTTGCC 59.931 47.619 0.00 0.00 0.00 4.52
1593 2615 2.514205 ACTTTGCCACACATTCTTGC 57.486 45.000 0.00 0.00 0.00 4.01
1594 2616 4.487948 CCATACTTTGCCACACATTCTTG 58.512 43.478 0.00 0.00 0.00 3.02
1595 2617 3.056607 GCCATACTTTGCCACACATTCTT 60.057 43.478 0.00 0.00 0.00 2.52
1596 2618 2.493278 GCCATACTTTGCCACACATTCT 59.507 45.455 0.00 0.00 0.00 2.40
1597 2619 2.230992 TGCCATACTTTGCCACACATTC 59.769 45.455 0.00 0.00 0.00 2.67
1598 2620 2.246469 TGCCATACTTTGCCACACATT 58.754 42.857 0.00 0.00 0.00 2.71
1599 2621 1.921982 TGCCATACTTTGCCACACAT 58.078 45.000 0.00 0.00 0.00 3.21
1600 2622 1.697284 TTGCCATACTTTGCCACACA 58.303 45.000 0.00 0.00 0.00 3.72
1601 2623 2.609350 CATTGCCATACTTTGCCACAC 58.391 47.619 0.00 0.00 0.00 3.82
1602 2624 1.067000 GCATTGCCATACTTTGCCACA 60.067 47.619 0.00 0.00 0.00 4.17
1603 2625 1.205417 AGCATTGCCATACTTTGCCAC 59.795 47.619 4.70 0.00 33.85 5.01
1604 2626 1.559368 AGCATTGCCATACTTTGCCA 58.441 45.000 4.70 0.00 33.85 4.92
1605 2627 2.689983 ACTAGCATTGCCATACTTTGCC 59.310 45.455 4.70 0.00 33.85 4.52
1606 2628 3.243201 GGACTAGCATTGCCATACTTTGC 60.243 47.826 4.70 0.00 0.00 3.68
1607 2629 4.202441 AGGACTAGCATTGCCATACTTTG 58.798 43.478 4.70 0.00 0.00 2.77
1608 2630 4.510167 AGGACTAGCATTGCCATACTTT 57.490 40.909 4.70 0.00 0.00 2.66
1609 2631 5.832539 ATAGGACTAGCATTGCCATACTT 57.167 39.130 4.70 0.00 0.00 2.24
1610 2632 6.295916 GGTTATAGGACTAGCATTGCCATACT 60.296 42.308 4.70 0.00 0.00 2.12
1611 2633 5.875359 GGTTATAGGACTAGCATTGCCATAC 59.125 44.000 4.70 0.00 0.00 2.39
1612 2634 5.546110 TGGTTATAGGACTAGCATTGCCATA 59.454 40.000 4.70 0.00 0.00 2.74
1613 2635 4.350816 TGGTTATAGGACTAGCATTGCCAT 59.649 41.667 4.70 0.00 0.00 4.40
1614 2636 3.714280 TGGTTATAGGACTAGCATTGCCA 59.286 43.478 4.70 0.00 0.00 4.92
1615 2637 4.351874 TGGTTATAGGACTAGCATTGCC 57.648 45.455 4.70 0.00 0.00 4.52
1616 2638 5.588648 TGTTTGGTTATAGGACTAGCATTGC 59.411 40.000 0.00 0.00 0.00 3.56
1617 2639 6.238484 GCTGTTTGGTTATAGGACTAGCATTG 60.238 42.308 0.00 0.00 0.00 2.82
1618 2640 5.823045 GCTGTTTGGTTATAGGACTAGCATT 59.177 40.000 0.00 0.00 0.00 3.56
1619 2641 5.368989 GCTGTTTGGTTATAGGACTAGCAT 58.631 41.667 0.00 0.00 0.00 3.79
1620 2642 4.383770 GGCTGTTTGGTTATAGGACTAGCA 60.384 45.833 0.00 0.00 0.00 3.49
1621 2643 4.127907 GGCTGTTTGGTTATAGGACTAGC 58.872 47.826 0.00 0.00 0.00 3.42
1622 2644 4.444449 GGGGCTGTTTGGTTATAGGACTAG 60.444 50.000 0.00 0.00 0.00 2.57
1623 2645 3.457012 GGGGCTGTTTGGTTATAGGACTA 59.543 47.826 0.00 0.00 0.00 2.59
1624 2646 2.241430 GGGGCTGTTTGGTTATAGGACT 59.759 50.000 0.00 0.00 0.00 3.85
1625 2647 2.241430 AGGGGCTGTTTGGTTATAGGAC 59.759 50.000 0.00 0.00 0.00 3.85
1626 2648 2.568979 AGGGGCTGTTTGGTTATAGGA 58.431 47.619 0.00 0.00 0.00 2.94
1627 2649 4.079958 ACTTAGGGGCTGTTTGGTTATAGG 60.080 45.833 0.00 0.00 0.00 2.57
1628 2650 5.112129 ACTTAGGGGCTGTTTGGTTATAG 57.888 43.478 0.00 0.00 0.00 1.31
1629 2651 5.503002 GAACTTAGGGGCTGTTTGGTTATA 58.497 41.667 0.00 0.00 0.00 0.98
1630 2652 4.341487 GAACTTAGGGGCTGTTTGGTTAT 58.659 43.478 0.00 0.00 0.00 1.89
1631 2653 3.499021 GGAACTTAGGGGCTGTTTGGTTA 60.499 47.826 0.00 0.00 0.00 2.85
1632 2654 2.594131 GAACTTAGGGGCTGTTTGGTT 58.406 47.619 0.00 0.00 0.00 3.67
1633 2655 1.203013 GGAACTTAGGGGCTGTTTGGT 60.203 52.381 0.00 0.00 0.00 3.67
1634 2656 1.075536 AGGAACTTAGGGGCTGTTTGG 59.924 52.381 0.00 0.00 27.25 3.28
1635 2657 2.437413 GAGGAACTTAGGGGCTGTTTG 58.563 52.381 0.00 0.00 41.55 2.93
1636 2658 1.003233 CGAGGAACTTAGGGGCTGTTT 59.997 52.381 0.00 0.00 41.55 2.83
1637 2659 0.613777 CGAGGAACTTAGGGGCTGTT 59.386 55.000 0.00 0.00 41.55 3.16
1638 2660 1.265454 CCGAGGAACTTAGGGGCTGT 61.265 60.000 0.00 0.00 41.55 4.40
1639 2661 0.976073 TCCGAGGAACTTAGGGGCTG 60.976 60.000 0.00 0.00 41.55 4.85
1640 2662 0.688087 CTCCGAGGAACTTAGGGGCT 60.688 60.000 0.00 0.00 41.55 5.19
1641 2663 1.823976 CTCCGAGGAACTTAGGGGC 59.176 63.158 0.00 0.00 41.55 5.80
1642 2664 0.976073 TGCTCCGAGGAACTTAGGGG 60.976 60.000 0.00 0.00 41.55 4.79
1643 2665 0.175989 GTGCTCCGAGGAACTTAGGG 59.824 60.000 0.00 0.00 41.55 3.53
1644 2666 1.134965 CAGTGCTCCGAGGAACTTAGG 60.135 57.143 0.00 0.00 41.55 2.69
1645 2667 1.819288 TCAGTGCTCCGAGGAACTTAG 59.181 52.381 0.00 0.00 41.55 2.18
1667 2689 9.554395 TTCACACATGTCTTCTCTTTTTATACA 57.446 29.630 0.00 0.00 0.00 2.29
1693 2715 4.380531 TCTTCGTGCACTTTCTCTTGAAT 58.619 39.130 16.19 0.00 31.56 2.57
1710 2732 8.072567 ACTCAAAAAGATTCAGATGTTTCTTCG 58.927 33.333 0.00 0.00 29.36 3.79
1724 2768 7.491682 ACAACATGTAGCAACTCAAAAAGATT 58.508 30.769 0.00 0.00 0.00 2.40
1725 2769 7.042797 ACAACATGTAGCAACTCAAAAAGAT 57.957 32.000 0.00 0.00 0.00 2.40
1726 2770 6.449635 ACAACATGTAGCAACTCAAAAAGA 57.550 33.333 0.00 0.00 0.00 2.52
1727 2771 7.524294 AAACAACATGTAGCAACTCAAAAAG 57.476 32.000 0.00 0.00 0.00 2.27
1728 2772 7.386299 ACAAAACAACATGTAGCAACTCAAAAA 59.614 29.630 0.00 0.00 0.00 1.94
1729 2773 6.870965 ACAAAACAACATGTAGCAACTCAAAA 59.129 30.769 0.00 0.00 0.00 2.44
1730 2774 6.393990 ACAAAACAACATGTAGCAACTCAAA 58.606 32.000 0.00 0.00 0.00 2.69
1731 2775 5.960113 ACAAAACAACATGTAGCAACTCAA 58.040 33.333 0.00 0.00 0.00 3.02
1732 2776 5.574891 ACAAAACAACATGTAGCAACTCA 57.425 34.783 0.00 0.00 0.00 3.41
1733 2777 6.033341 TCAACAAAACAACATGTAGCAACTC 58.967 36.000 0.00 0.00 0.00 3.01
1734 2778 5.960113 TCAACAAAACAACATGTAGCAACT 58.040 33.333 0.00 0.00 0.00 3.16
1735 2779 6.639671 TTCAACAAAACAACATGTAGCAAC 57.360 33.333 0.00 0.00 0.00 4.17
1736 2780 7.840342 ATTTCAACAAAACAACATGTAGCAA 57.160 28.000 0.00 0.00 0.00 3.91
1737 2781 7.763528 AGAATTTCAACAAAACAACATGTAGCA 59.236 29.630 0.00 0.00 0.00 3.49
1738 2782 8.057742 CAGAATTTCAACAAAACAACATGTAGC 58.942 33.333 0.00 0.00 0.00 3.58
1739 2783 8.542132 CCAGAATTTCAACAAAACAACATGTAG 58.458 33.333 0.00 0.00 0.00 2.74
1740 2784 8.037758 ACCAGAATTTCAACAAAACAACATGTA 58.962 29.630 0.00 0.00 0.00 2.29
1741 2785 6.878389 ACCAGAATTTCAACAAAACAACATGT 59.122 30.769 0.00 0.00 0.00 3.21
1742 2786 7.148440 ACACCAGAATTTCAACAAAACAACATG 60.148 33.333 0.00 0.00 0.00 3.21
1743 2787 6.878389 ACACCAGAATTTCAACAAAACAACAT 59.122 30.769 0.00 0.00 0.00 2.71
1744 2788 6.226787 ACACCAGAATTTCAACAAAACAACA 58.773 32.000 0.00 0.00 0.00 3.33
1745 2789 6.720012 ACACCAGAATTTCAACAAAACAAC 57.280 33.333 0.00 0.00 0.00 3.32
1746 2790 7.378966 TGTACACCAGAATTTCAACAAAACAA 58.621 30.769 0.00 0.00 0.00 2.83
1840 2899 1.735376 TACTCGAATCCTGGCTCCGC 61.735 60.000 0.00 0.00 0.00 5.54
1841 2900 0.962489 ATACTCGAATCCTGGCTCCG 59.038 55.000 0.00 0.00 0.00 4.63
1842 2901 2.494073 CCTATACTCGAATCCTGGCTCC 59.506 54.545 0.00 0.00 0.00 4.70
1843 2902 3.422796 TCCTATACTCGAATCCTGGCTC 58.577 50.000 0.00 0.00 0.00 4.70
1844 2903 3.426615 CTCCTATACTCGAATCCTGGCT 58.573 50.000 0.00 0.00 0.00 4.75
1845 2904 2.494073 CCTCCTATACTCGAATCCTGGC 59.506 54.545 0.00 0.00 0.00 4.85
1846 2905 3.093057 CCCTCCTATACTCGAATCCTGG 58.907 54.545 0.00 0.00 0.00 4.45
1847 2906 3.093057 CCCCTCCTATACTCGAATCCTG 58.907 54.545 0.00 0.00 0.00 3.86
1848 2907 2.557901 GCCCCTCCTATACTCGAATCCT 60.558 54.545 0.00 0.00 0.00 3.24
1849 2908 1.826096 GCCCCTCCTATACTCGAATCC 59.174 57.143 0.00 0.00 0.00 3.01
1850 2909 1.826096 GGCCCCTCCTATACTCGAATC 59.174 57.143 0.00 0.00 0.00 2.52
1851 2910 1.891450 CGGCCCCTCCTATACTCGAAT 60.891 57.143 0.00 0.00 0.00 3.34
1852 2911 0.538977 CGGCCCCTCCTATACTCGAA 60.539 60.000 0.00 0.00 0.00 3.71
1853 2912 1.074423 CGGCCCCTCCTATACTCGA 59.926 63.158 0.00 0.00 0.00 4.04
1854 2913 0.961358 CTCGGCCCCTCCTATACTCG 60.961 65.000 0.00 0.00 0.00 4.18
1855 2914 0.112801 ACTCGGCCCCTCCTATACTC 59.887 60.000 0.00 0.00 0.00 2.59
1856 2915 1.075212 GTACTCGGCCCCTCCTATACT 59.925 57.143 0.00 0.00 0.00 2.12
1857 2916 1.543607 GTACTCGGCCCCTCCTATAC 58.456 60.000 0.00 0.00 0.00 1.47
1858 2917 0.037303 CGTACTCGGCCCCTCCTATA 59.963 60.000 0.00 0.00 0.00 1.31
1859 2918 1.228490 CGTACTCGGCCCCTCCTAT 60.228 63.158 0.00 0.00 0.00 2.57
1860 2919 1.344953 TACGTACTCGGCCCCTCCTA 61.345 60.000 0.00 0.00 41.85 2.94
1861 2920 2.004408 ATACGTACTCGGCCCCTCCT 62.004 60.000 0.00 0.00 41.85 3.69
1862 2921 0.250901 TATACGTACTCGGCCCCTCC 60.251 60.000 0.00 0.00 41.85 4.30
1863 2922 1.831580 ATATACGTACTCGGCCCCTC 58.168 55.000 0.00 0.00 41.85 4.30
1864 2923 1.891150 CAATATACGTACTCGGCCCCT 59.109 52.381 0.00 0.00 41.85 4.79
1865 2924 1.888512 TCAATATACGTACTCGGCCCC 59.111 52.381 0.00 0.00 41.85 5.80
1866 2925 3.442977 AGATCAATATACGTACTCGGCCC 59.557 47.826 0.00 0.00 41.85 5.80
1867 2926 4.698583 AGATCAATATACGTACTCGGCC 57.301 45.455 0.00 0.00 41.85 6.13
1868 2927 7.695820 AGATTAGATCAATATACGTACTCGGC 58.304 38.462 0.00 0.00 41.85 5.54
1869 2928 9.491934 CAAGATTAGATCAATATACGTACTCGG 57.508 37.037 0.00 0.00 41.85 4.63
1888 2947 9.146984 CGACAAGAGTAATTACCAACAAGATTA 57.853 33.333 12.05 0.00 0.00 1.75
1889 2948 7.876068 TCGACAAGAGTAATTACCAACAAGATT 59.124 33.333 12.05 0.00 0.00 2.40
1890 2949 7.383687 TCGACAAGAGTAATTACCAACAAGAT 58.616 34.615 12.05 0.00 0.00 2.40
1891 2950 6.751157 TCGACAAGAGTAATTACCAACAAGA 58.249 36.000 12.05 2.21 0.00 3.02
1892 2951 7.462856 CGATCGACAAGAGTAATTACCAACAAG 60.463 40.741 10.26 1.16 0.00 3.16
1893 2952 6.309494 CGATCGACAAGAGTAATTACCAACAA 59.691 38.462 10.26 0.00 0.00 2.83
1894 2953 5.803461 CGATCGACAAGAGTAATTACCAACA 59.197 40.000 10.26 0.00 0.00 3.33
1895 2954 6.032094 TCGATCGACAAGAGTAATTACCAAC 58.968 40.000 15.15 4.73 0.00 3.77
1896 2955 6.198650 TCGATCGACAAGAGTAATTACCAA 57.801 37.500 15.15 0.00 0.00 3.67
1897 2956 5.823209 TCGATCGACAAGAGTAATTACCA 57.177 39.130 15.15 0.00 0.00 3.25
1898 2957 8.074972 AGTAATCGATCGACAAGAGTAATTACC 58.925 37.037 22.06 6.82 34.34 2.85
1899 2958 9.105206 GAGTAATCGATCGACAAGAGTAATTAC 57.895 37.037 22.06 19.49 34.19 1.89
1900 2959 9.053840 AGAGTAATCGATCGACAAGAGTAATTA 57.946 33.333 22.06 8.86 0.00 1.40
1901 2960 7.932335 AGAGTAATCGATCGACAAGAGTAATT 58.068 34.615 22.06 9.90 0.00 1.40
1902 2961 7.499321 AGAGTAATCGATCGACAAGAGTAAT 57.501 36.000 22.06 0.00 0.00 1.89
1903 2962 6.922247 AGAGTAATCGATCGACAAGAGTAA 57.078 37.500 22.06 0.00 0.00 2.24
1904 2963 6.315642 ACAAGAGTAATCGATCGACAAGAGTA 59.684 38.462 22.06 0.00 0.00 2.59
1905 2964 5.124138 ACAAGAGTAATCGATCGACAAGAGT 59.876 40.000 22.06 8.61 0.00 3.24
1906 2965 5.574082 ACAAGAGTAATCGATCGACAAGAG 58.426 41.667 22.06 8.33 0.00 2.85
1907 2966 5.562506 ACAAGAGTAATCGATCGACAAGA 57.437 39.130 22.06 2.80 0.00 3.02
1908 2967 4.434909 CGACAAGAGTAATCGATCGACAAG 59.565 45.833 22.06 7.21 38.10 3.16
1909 2968 4.340263 CGACAAGAGTAATCGATCGACAA 58.660 43.478 22.06 8.66 38.10 3.18
1910 2969 3.936661 CGACAAGAGTAATCGATCGACA 58.063 45.455 22.06 8.68 38.10 4.35
2234 3293 1.066787 GATAGTAATCAGGGGCGGAGC 60.067 57.143 0.00 0.00 42.20 4.70
2235 3294 2.248248 TGATAGTAATCAGGGGCGGAG 58.752 52.381 0.00 0.00 37.20 4.63
2236 3295 2.391926 TGATAGTAATCAGGGGCGGA 57.608 50.000 0.00 0.00 37.20 5.54
2249 3308 9.959721 TTTTCCTGCTCTAAAATAACTGATAGT 57.040 29.630 0.00 0.00 0.00 2.12
2285 3344 7.623677 TCCTCATAAATAGGAAGGAAAGACTGA 59.376 37.037 0.00 0.00 40.23 3.41
2301 3360 8.315220 AGAATGGCATCTTTTTCCTCATAAAT 57.685 30.769 0.00 0.00 0.00 1.40
2305 3365 6.403878 CAAAGAATGGCATCTTTTTCCTCAT 58.596 36.000 16.88 0.00 45.05 2.90
2331 3391 4.639310 ACAGGCTGCTTTCTTCATAATCTG 59.361 41.667 15.89 0.00 0.00 2.90
2337 3397 2.288640 GCAAACAGGCTGCTTTCTTCAT 60.289 45.455 15.89 0.00 36.84 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.