Multiple sequence alignment - TraesCS4A01G140300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G140300 chr4A 100.000 7277 0 0 1 7277 215255602 215248326 0.000000e+00 13439.0
1 TraesCS4A01G140300 chr4A 89.730 185 19 0 23 207 215264182 215264366 3.390000e-58 237.0
2 TraesCS4A01G140300 chr4A 86.932 176 23 0 6011 6186 215249517 215249342 1.600000e-46 198.0
3 TraesCS4A01G140300 chr4A 86.932 176 23 0 6086 6261 215249592 215249417 1.600000e-46 198.0
4 TraesCS4A01G140300 chr4A 80.709 254 28 12 4284 4529 530174489 530174729 2.090000e-40 178.0
5 TraesCS4A01G140300 chr4A 85.833 120 14 3 4395 4514 731152591 731152707 2.760000e-24 124.0
6 TraesCS4A01G140300 chr4A 85.833 120 14 3 4395 4514 731167956 731168072 2.760000e-24 124.0
7 TraesCS4A01G140300 chr4D 96.555 2874 92 5 1346 4215 294343070 294345940 0.000000e+00 4752.0
8 TraesCS4A01G140300 chr4D 95.569 2392 98 3 4218 6601 294346154 294348545 0.000000e+00 3823.0
9 TraesCS4A01G140300 chr4D 97.436 975 20 3 294 1267 294342102 294343072 0.000000e+00 1657.0
10 TraesCS4A01G140300 chr4D 94.172 652 12 8 6629 7277 294349081 294349709 0.000000e+00 970.0
11 TraesCS4A01G140300 chr4D 83.529 255 31 7 4284 4529 65537974 65537722 2.040000e-55 228.0
12 TraesCS4A01G140300 chr4D 86.932 176 23 0 6011 6186 294348030 294348205 1.600000e-46 198.0
13 TraesCS4A01G140300 chr4D 80.242 248 36 9 4279 4514 301756303 301756549 2.700000e-39 174.0
14 TraesCS4A01G140300 chr4B 95.720 2874 98 5 1346 4215 362140849 362143701 0.000000e+00 4602.0
15 TraesCS4A01G140300 chr4B 95.278 2287 86 7 4218 6491 362143915 362146192 0.000000e+00 3605.0
16 TraesCS4A01G140300 chr4B 95.683 973 35 5 298 1267 362139883 362140851 0.000000e+00 1557.0
17 TraesCS4A01G140300 chr4B 94.507 801 29 7 6488 7277 362146351 362147147 0.000000e+00 1221.0
18 TraesCS4A01G140300 chr4B 90.654 107 6 4 1251 1354 40170084 40169979 9.840000e-29 139.0
19 TraesCS4A01G140300 chr4B 100.000 29 0 0 4276 4304 471767607 471767579 4.000000e-03 54.7
20 TraesCS4A01G140300 chr3A 90.155 193 19 0 15 207 540694554 540694746 1.210000e-62 252.0
21 TraesCS4A01G140300 chr3A 89.189 185 20 0 23 207 540686262 540686078 1.580000e-56 231.0
22 TraesCS4A01G140300 chr3A 90.654 107 5 5 1264 1368 72473529 72473632 3.540000e-28 137.0
23 TraesCS4A01G140300 chr3A 85.294 136 13 3 25 153 703966137 703966272 4.580000e-27 134.0
24 TraesCS4A01G140300 chr3A 74.902 255 56 8 4279 4529 186047522 186047772 7.720000e-20 110.0
25 TraesCS4A01G140300 chr1A 90.811 185 17 0 23 207 278645946 278645762 1.570000e-61 248.0
26 TraesCS4A01G140300 chr1A 82.906 234 30 7 4277 4502 122498497 122498728 1.240000e-47 202.0
27 TraesCS4A01G140300 chr1A 94.681 94 3 2 1260 1352 537555759 537555851 2.120000e-30 145.0
28 TraesCS4A01G140300 chr5A 90.270 185 18 0 23 207 548283444 548283628 7.290000e-60 243.0
29 TraesCS4A01G140300 chr5A 89.189 185 19 1 23 207 548243643 548243460 5.680000e-56 230.0
30 TraesCS4A01G140300 chr5A 85.629 167 17 6 4279 4441 503139117 503139280 1.260000e-37 169.0
31 TraesCS4A01G140300 chr6A 89.730 185 19 0 23 207 373108829 373109013 3.390000e-58 237.0
32 TraesCS4A01G140300 chr3D 88.710 186 19 2 23 207 134566170 134565986 7.350000e-55 226.0
33 TraesCS4A01G140300 chr3D 83.962 106 17 0 4279 4384 159794502 159794607 1.290000e-17 102.0
34 TraesCS4A01G140300 chr3D 88.750 80 9 0 4451 4530 483353578 483353657 1.670000e-16 99.0
35 TraesCS4A01G140300 chr1D 88.649 185 21 0 23 207 79046149 79046333 7.350000e-55 226.0
36 TraesCS4A01G140300 chr1D 79.297 256 30 16 4278 4515 465098533 465098783 2.720000e-34 158.0
37 TraesCS4A01G140300 chr1D 91.346 104 7 2 1252 1355 73677256 73677357 2.740000e-29 141.0
38 TraesCS4A01G140300 chr7D 83.562 219 27 5 4279 4488 623646176 623646394 5.760000e-46 196.0
39 TraesCS4A01G140300 chr5D 86.826 167 15 6 4279 4441 398108464 398108627 5.800000e-41 180.0
40 TraesCS4A01G140300 chr5D 81.364 220 25 9 4323 4526 239273797 239273578 1.620000e-36 165.0
41 TraesCS4A01G140300 chr5D 83.969 131 19 2 23 152 61695910 61696039 2.760000e-24 124.0
42 TraesCS4A01G140300 chr2A 80.804 224 29 9 4279 4493 759303520 759303302 5.840000e-36 163.0
43 TraesCS4A01G140300 chr2A 77.381 252 38 15 7029 7277 61491039 61490804 1.650000e-26 132.0
44 TraesCS4A01G140300 chr2D 78.400 250 39 11 7029 7277 61024796 61024561 1.640000e-31 148.0
45 TraesCS4A01G140300 chr2D 78.500 200 34 7 4337 4529 255618785 255618982 9.910000e-24 122.0
46 TraesCS4A01G140300 chr6B 94.737 95 3 2 1257 1350 28914351 28914258 5.880000e-31 147.0
47 TraesCS4A01G140300 chr6B 93.220 59 3 1 7219 7277 616722130 616722187 1.300000e-12 86.1
48 TraesCS4A01G140300 chr2B 93.878 98 4 2 1261 1357 303097354 303097258 5.880000e-31 147.0
49 TraesCS4A01G140300 chr2B 78.088 251 38 13 7029 7277 95799173 95798938 7.610000e-30 143.0
50 TraesCS4A01G140300 chr2B 92.233 103 5 3 1264 1365 751263660 751263560 7.610000e-30 143.0
51 TraesCS4A01G140300 chr1B 93.878 98 4 2 1261 1357 258729883 258729979 5.880000e-31 147.0
52 TraesCS4A01G140300 chr1B 94.681 94 1 4 1254 1346 121004857 121004947 7.610000e-30 143.0
53 TraesCS4A01G140300 chr1B 88.235 68 8 0 4277 4344 170567273 170567340 1.680000e-11 82.4
54 TraesCS4A01G140300 chr7A 77.043 257 37 14 4279 4527 696814992 696814750 2.130000e-25 128.0
55 TraesCS4A01G140300 chr7A 85.714 119 15 2 4396 4514 9645764 9645880 2.760000e-24 124.0
56 TraesCS4A01G140300 chr7A 84.000 75 10 2 4279 4352 25707353 25707280 3.640000e-08 71.3
57 TraesCS4A01G140300 chr5B 83.721 86 13 1 4455 4539 47112342 47112427 6.050000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G140300 chr4A 215248326 215255602 7276 True 13439.00 13439 100.0000 1 7277 1 chr4A.!!$R1 7276
1 TraesCS4A01G140300 chr4D 294342102 294349709 7607 False 2280.00 4752 94.1328 294 7277 5 chr4D.!!$F2 6983
2 TraesCS4A01G140300 chr4B 362139883 362147147 7264 False 2746.25 4602 95.2970 298 7277 4 chr4B.!!$F1 6979

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
280 281 0.030235 TGCCGATCAGGATAACGTCG 59.970 55.0 7.64 0.00 45.00 5.12 F
281 282 0.309922 GCCGATCAGGATAACGTCGA 59.690 55.0 0.00 0.00 45.00 4.20 F
1673 1677 0.392998 CAAACGGTGATCCAGGGGAG 60.393 60.0 0.00 0.00 34.05 4.30 F
1774 1778 0.462581 ATGGCACGCACTGAGGTATG 60.463 55.0 0.00 0.00 0.00 2.39 F
2708 2717 1.075601 TCCTTGATTTCCTGTGGCCT 58.924 50.0 3.32 0.00 0.00 5.19 F
3446 3455 0.725686 CTGAAGCTGCTGATGAACCG 59.274 55.0 1.35 0.00 0.00 4.44 F
4222 4442 0.601046 TATGCTAGAGCCGCACATGC 60.601 55.0 0.00 0.00 40.65 4.06 F
4272 4492 1.388547 TGGAAGTTGTGCCACAGTTC 58.611 50.0 11.62 11.62 0.00 3.01 F
5947 6175 0.547471 TGACCCTGAGGAGGATGCAA 60.547 55.0 0.00 0.00 42.93 4.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1977 1985 0.535553 TCCGCAAGCTTTTAACGGGT 60.536 50.000 20.59 0.00 43.96 5.28 R
2240 2248 2.221169 CACCACAATCATCATACCCCG 58.779 52.381 0.00 0.00 0.00 5.73 R
3025 3034 0.178964 CCTGGGAAGGAGCAAAACCA 60.179 55.000 0.00 0.00 0.00 3.67 R
3428 3437 0.321346 TCGGTTCATCAGCAGCTTCA 59.679 50.000 0.00 0.00 0.00 3.02 R
3813 3822 0.458669 CCAATGGCCAGATCACTTGC 59.541 55.000 13.05 0.00 34.59 4.01 R
5201 5427 0.986527 TCCTTTCATCTGCTGGCTGA 59.013 50.000 4.76 4.76 0.00 4.26 R
5913 6141 0.459237 GGTCACTCTCAGGTGATGCG 60.459 60.000 0.70 0.00 46.04 4.73 R
5966 6194 1.068055 CCTGCAGGTTTTCATCAGCAC 60.068 52.381 25.53 0.00 0.00 4.40 R
7016 7921 1.395826 ATACCCTGCCACGAGAGAGC 61.396 60.000 0.00 0.00 35.13 4.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.367743 CACAATGCAGTGCCCGCT 61.368 61.111 15.18 0.00 32.04 5.52
18 19 3.367743 ACAATGCAGTGCCCGCTG 61.368 61.111 15.18 6.95 39.37 5.18
35 36 2.664851 GCATATGTGCGGCGCCTA 60.665 61.111 30.82 18.70 42.28 3.93
36 37 2.671177 GCATATGTGCGGCGCCTAG 61.671 63.158 30.82 11.41 42.28 3.02
49 50 4.277593 CCTAGCTCGGAGGCGCTG 62.278 72.222 7.64 0.00 36.29 5.18
50 51 4.940593 CTAGCTCGGAGGCGCTGC 62.941 72.222 7.64 0.00 36.29 5.25
98 99 3.660111 GGTGGACTGGCGTGCAAC 61.660 66.667 5.42 4.57 43.33 4.17
109 110 3.649986 GTGCAACGCCGCTGAACT 61.650 61.111 0.00 0.00 0.00 3.01
110 111 3.648982 TGCAACGCCGCTGAACTG 61.649 61.111 0.00 0.00 0.00 3.16
111 112 4.389576 GCAACGCCGCTGAACTGG 62.390 66.667 0.00 0.00 0.00 4.00
112 113 2.664851 CAACGCCGCTGAACTGGA 60.665 61.111 0.00 0.00 0.00 3.86
113 114 2.665185 AACGCCGCTGAACTGGAC 60.665 61.111 0.00 0.00 0.00 4.02
116 117 2.665185 GCCGCTGAACTGGACGTT 60.665 61.111 0.00 0.00 38.91 3.99
117 118 2.954753 GCCGCTGAACTGGACGTTG 61.955 63.158 0.00 0.00 35.56 4.10
118 119 2.551270 CGCTGAACTGGACGTTGC 59.449 61.111 0.00 0.00 35.56 4.17
119 120 2.243957 CGCTGAACTGGACGTTGCA 61.244 57.895 0.00 0.00 35.56 4.08
120 121 1.279840 GCTGAACTGGACGTTGCAC 59.720 57.895 0.00 0.00 35.56 4.57
121 122 1.941812 CTGAACTGGACGTTGCACC 59.058 57.895 0.00 0.00 35.56 5.01
122 123 1.831389 CTGAACTGGACGTTGCACCG 61.831 60.000 0.62 0.62 35.56 4.94
123 124 1.885850 GAACTGGACGTTGCACCGT 60.886 57.895 9.76 9.76 45.18 4.83
124 125 0.598158 GAACTGGACGTTGCACCGTA 60.598 55.000 10.01 0.00 41.98 4.02
125 126 0.599204 AACTGGACGTTGCACCGTAG 60.599 55.000 10.01 7.18 41.98 3.51
126 127 3.886888 AACTGGACGTTGCACCGTAGG 62.887 57.143 10.01 5.46 45.06 3.18
138 139 2.586079 CGTAGGATGTGGCGCCTG 60.586 66.667 29.70 1.98 35.73 4.85
139 140 2.897350 GTAGGATGTGGCGCCTGC 60.897 66.667 29.70 20.57 41.71 4.85
140 141 4.529219 TAGGATGTGGCGCCTGCG 62.529 66.667 29.70 7.26 44.10 5.18
156 157 2.410060 CGTGACGGGCGCTATACA 59.590 61.111 7.64 0.12 0.00 2.29
157 158 1.226745 CGTGACGGGCGCTATACAA 60.227 57.895 7.64 0.00 0.00 2.41
158 159 0.802994 CGTGACGGGCGCTATACAAA 60.803 55.000 7.64 0.00 0.00 2.83
159 160 1.361793 GTGACGGGCGCTATACAAAA 58.638 50.000 7.64 0.00 0.00 2.44
160 161 1.733360 GTGACGGGCGCTATACAAAAA 59.267 47.619 7.64 0.00 0.00 1.94
192 193 3.134574 TGAAATAGTTTCACGGGCAGT 57.865 42.857 1.24 0.00 44.21 4.40
193 194 3.482436 TGAAATAGTTTCACGGGCAGTT 58.518 40.909 1.24 0.00 44.21 3.16
194 195 3.500680 TGAAATAGTTTCACGGGCAGTTC 59.499 43.478 1.24 0.00 44.21 3.01
195 196 2.851263 ATAGTTTCACGGGCAGTTCA 57.149 45.000 0.00 0.00 0.00 3.18
196 197 2.851263 TAGTTTCACGGGCAGTTCAT 57.149 45.000 0.00 0.00 0.00 2.57
197 198 1.981256 AGTTTCACGGGCAGTTCATT 58.019 45.000 0.00 0.00 0.00 2.57
198 199 3.134574 AGTTTCACGGGCAGTTCATTA 57.865 42.857 0.00 0.00 0.00 1.90
199 200 3.686016 AGTTTCACGGGCAGTTCATTAT 58.314 40.909 0.00 0.00 0.00 1.28
200 201 3.440173 AGTTTCACGGGCAGTTCATTATG 59.560 43.478 0.00 0.00 0.00 1.90
201 202 2.779755 TCACGGGCAGTTCATTATGT 57.220 45.000 0.00 0.00 0.00 2.29
202 203 2.355197 TCACGGGCAGTTCATTATGTG 58.645 47.619 0.00 0.00 0.00 3.21
203 204 2.027653 TCACGGGCAGTTCATTATGTGA 60.028 45.455 0.00 0.00 33.14 3.58
204 205 2.746904 CACGGGCAGTTCATTATGTGAA 59.253 45.455 0.00 0.00 44.36 3.18
214 215 5.749596 TTCATTATGTGAATTACGGGCAG 57.250 39.130 0.00 0.00 41.79 4.85
215 216 4.776349 TCATTATGTGAATTACGGGCAGT 58.224 39.130 0.00 0.00 32.78 4.40
216 217 5.189928 TCATTATGTGAATTACGGGCAGTT 58.810 37.500 0.00 0.00 32.78 3.16
217 218 5.295787 TCATTATGTGAATTACGGGCAGTTC 59.704 40.000 0.00 0.00 32.78 3.01
218 219 2.552599 TGTGAATTACGGGCAGTTCA 57.447 45.000 0.00 0.00 0.00 3.18
219 220 3.066291 TGTGAATTACGGGCAGTTCAT 57.934 42.857 0.00 0.00 33.65 2.57
220 221 3.417101 TGTGAATTACGGGCAGTTCATT 58.583 40.909 0.00 0.00 33.65 2.57
221 222 4.580868 TGTGAATTACGGGCAGTTCATTA 58.419 39.130 0.00 0.00 33.65 1.90
222 223 5.189928 TGTGAATTACGGGCAGTTCATTAT 58.810 37.500 0.00 0.00 33.65 1.28
223 224 5.065859 TGTGAATTACGGGCAGTTCATTATG 59.934 40.000 0.00 0.00 33.65 1.90
224 225 5.065988 GTGAATTACGGGCAGTTCATTATGT 59.934 40.000 0.00 0.00 33.65 2.29
225 226 5.065859 TGAATTACGGGCAGTTCATTATGTG 59.934 40.000 0.00 0.00 0.00 3.21
226 227 2.779755 ACGGGCAGTTCATTATGTGA 57.220 45.000 0.00 0.00 34.25 3.58
227 228 3.066291 ACGGGCAGTTCATTATGTGAA 57.934 42.857 0.00 0.00 44.36 3.18
241 242 9.340695 TTCATTATGTGAATTGATTTCGTCAAC 57.659 29.630 0.00 0.00 40.52 3.18
252 253 6.618287 TGATTTCGTCAACAGATCAAAACT 57.382 33.333 0.00 0.00 32.78 2.66
253 254 6.429624 TGATTTCGTCAACAGATCAAAACTG 58.570 36.000 0.00 0.00 40.68 3.16
255 256 4.794248 TCGTCAACAGATCAAAACTGTG 57.206 40.909 0.00 0.00 46.01 3.66
256 257 4.438148 TCGTCAACAGATCAAAACTGTGA 58.562 39.130 0.00 0.00 46.01 3.58
257 258 4.873259 TCGTCAACAGATCAAAACTGTGAA 59.127 37.500 0.00 0.00 46.01 3.18
258 259 5.352846 TCGTCAACAGATCAAAACTGTGAAA 59.647 36.000 0.00 0.00 46.01 2.69
259 260 6.038161 TCGTCAACAGATCAAAACTGTGAAAT 59.962 34.615 0.00 0.00 46.01 2.17
260 261 6.692681 CGTCAACAGATCAAAACTGTGAAATT 59.307 34.615 0.00 0.00 46.01 1.82
261 262 7.220683 CGTCAACAGATCAAAACTGTGAAATTT 59.779 33.333 0.00 0.00 46.01 1.82
262 263 8.323140 GTCAACAGATCAAAACTGTGAAATTTG 58.677 33.333 0.00 0.00 46.01 2.32
263 264 6.833342 ACAGATCAAAACTGTGAAATTTGC 57.167 33.333 0.00 0.00 45.19 3.68
264 265 5.754890 ACAGATCAAAACTGTGAAATTTGCC 59.245 36.000 0.00 0.00 45.19 4.52
265 266 4.984161 AGATCAAAACTGTGAAATTTGCCG 59.016 37.500 0.00 0.00 34.77 5.69
266 267 4.377839 TCAAAACTGTGAAATTTGCCGA 57.622 36.364 0.00 0.00 34.77 5.54
267 268 4.942852 TCAAAACTGTGAAATTTGCCGAT 58.057 34.783 0.00 0.00 34.77 4.18
268 269 4.981674 TCAAAACTGTGAAATTTGCCGATC 59.018 37.500 0.00 0.00 34.77 3.69
269 270 4.582701 AAACTGTGAAATTTGCCGATCA 57.417 36.364 0.00 0.00 0.00 2.92
270 271 3.837213 ACTGTGAAATTTGCCGATCAG 57.163 42.857 0.00 0.00 0.00 2.90
271 272 2.489329 ACTGTGAAATTTGCCGATCAGG 59.511 45.455 0.00 0.00 44.97 3.86
272 273 2.749076 CTGTGAAATTTGCCGATCAGGA 59.251 45.455 0.00 0.00 45.00 3.86
273 274 3.355378 TGTGAAATTTGCCGATCAGGAT 58.645 40.909 0.00 0.00 45.00 3.24
274 275 4.522114 TGTGAAATTTGCCGATCAGGATA 58.478 39.130 0.00 0.00 45.00 2.59
275 276 4.946772 TGTGAAATTTGCCGATCAGGATAA 59.053 37.500 0.00 1.90 45.00 1.75
276 277 5.163663 TGTGAAATTTGCCGATCAGGATAAC 60.164 40.000 0.00 0.00 45.00 1.89
277 278 4.035091 TGAAATTTGCCGATCAGGATAACG 59.965 41.667 0.00 0.00 45.00 3.18
278 279 2.684001 TTTGCCGATCAGGATAACGT 57.316 45.000 7.64 0.00 45.00 3.99
279 280 2.218953 TTGCCGATCAGGATAACGTC 57.781 50.000 7.64 0.00 45.00 4.34
280 281 0.030235 TGCCGATCAGGATAACGTCG 59.970 55.000 7.64 0.00 45.00 5.12
281 282 0.309922 GCCGATCAGGATAACGTCGA 59.690 55.000 0.00 0.00 45.00 4.20
282 283 1.268896 GCCGATCAGGATAACGTCGAA 60.269 52.381 0.00 0.00 45.00 3.71
283 284 2.382519 CCGATCAGGATAACGTCGAAC 58.617 52.381 0.00 0.00 45.00 3.95
284 285 2.382519 CGATCAGGATAACGTCGAACC 58.617 52.381 0.00 0.00 34.46 3.62
285 286 2.223409 CGATCAGGATAACGTCGAACCA 60.223 50.000 0.00 0.00 34.46 3.67
286 287 3.732774 CGATCAGGATAACGTCGAACCAA 60.733 47.826 0.00 0.00 34.46 3.67
287 288 3.663995 TCAGGATAACGTCGAACCAAA 57.336 42.857 0.00 0.00 0.00 3.28
288 289 3.319755 TCAGGATAACGTCGAACCAAAC 58.680 45.455 0.00 0.00 0.00 2.93
289 290 3.061322 CAGGATAACGTCGAACCAAACA 58.939 45.455 0.00 0.00 0.00 2.83
290 291 3.495377 CAGGATAACGTCGAACCAAACAA 59.505 43.478 0.00 0.00 0.00 2.83
291 292 3.744426 AGGATAACGTCGAACCAAACAAG 59.256 43.478 0.00 0.00 0.00 3.16
292 293 3.476181 GATAACGTCGAACCAAACAAGC 58.524 45.455 0.00 0.00 0.00 4.01
323 324 2.625737 CAGGATCATTTCTCACAGCGT 58.374 47.619 0.00 0.00 0.00 5.07
346 347 4.233789 GCAGAAACACACACACAAAAGAA 58.766 39.130 0.00 0.00 0.00 2.52
348 349 5.176590 GCAGAAACACACACACAAAAGAAAA 59.823 36.000 0.00 0.00 0.00 2.29
349 350 6.292596 GCAGAAACACACACACAAAAGAAAAA 60.293 34.615 0.00 0.00 0.00 1.94
889 893 3.665675 CTCCTCGCCTCCAAACCGG 62.666 68.421 0.00 0.00 0.00 5.28
1014 1018 2.680913 GCTGATGCACGTCGCCTTT 61.681 57.895 7.38 0.00 41.33 3.11
1140 1144 4.072088 CGCGTGCGGAGGTTCAAC 62.072 66.667 6.30 0.00 35.56 3.18
1144 1148 2.355363 TGCGGAGGTTCAACGACG 60.355 61.111 0.00 0.00 0.00 5.12
1154 1158 4.012895 CAACGACGGTGCTGTGGC 62.013 66.667 0.00 0.00 39.26 5.01
1247 1251 6.613755 AATTGGGATGTATTTAGCGTACAC 57.386 37.500 0.00 0.00 35.11 2.90
1255 1259 7.428183 GGATGTATTTAGCGTACACATTTGTTG 59.572 37.037 0.00 0.00 37.15 3.33
1269 1273 5.003804 ACATTTGTTGTGAGATGTACTCCC 58.996 41.667 0.00 0.00 44.34 4.30
1270 1274 4.974645 TTTGTTGTGAGATGTACTCCCT 57.025 40.909 0.00 0.00 44.34 4.20
1271 1275 4.537135 TTGTTGTGAGATGTACTCCCTC 57.463 45.455 0.00 0.00 44.34 4.30
1272 1276 2.832129 TGTTGTGAGATGTACTCCCTCC 59.168 50.000 0.00 0.00 44.34 4.30
1273 1277 3.100671 GTTGTGAGATGTACTCCCTCCT 58.899 50.000 0.00 0.00 44.34 3.69
1274 1278 3.474798 TGTGAGATGTACTCCCTCCTT 57.525 47.619 0.00 0.00 44.34 3.36
1275 1279 3.791320 TGTGAGATGTACTCCCTCCTTT 58.209 45.455 0.00 0.00 44.34 3.11
1276 1280 3.769844 TGTGAGATGTACTCCCTCCTTTC 59.230 47.826 0.00 0.00 44.34 2.62
1277 1281 3.133183 GTGAGATGTACTCCCTCCTTTCC 59.867 52.174 0.00 0.00 44.34 3.13
1278 1282 3.245984 TGAGATGTACTCCCTCCTTTCCA 60.246 47.826 0.00 0.00 44.34 3.53
1279 1283 3.775316 GAGATGTACTCCCTCCTTTCCAA 59.225 47.826 0.00 0.00 39.53 3.53
1280 1284 4.175962 AGATGTACTCCCTCCTTTCCAAA 58.824 43.478 0.00 0.00 0.00 3.28
1281 1285 4.601857 AGATGTACTCCCTCCTTTCCAAAA 59.398 41.667 0.00 0.00 0.00 2.44
1282 1286 5.254032 AGATGTACTCCCTCCTTTCCAAAAT 59.746 40.000 0.00 0.00 0.00 1.82
1283 1287 6.447084 AGATGTACTCCCTCCTTTCCAAAATA 59.553 38.462 0.00 0.00 0.00 1.40
1284 1288 6.062258 TGTACTCCCTCCTTTCCAAAATAG 57.938 41.667 0.00 0.00 0.00 1.73
1285 1289 5.788533 TGTACTCCCTCCTTTCCAAAATAGA 59.211 40.000 0.00 0.00 0.00 1.98
1286 1290 6.447084 TGTACTCCCTCCTTTCCAAAATAGAT 59.553 38.462 0.00 0.00 0.00 1.98
1287 1291 5.760131 ACTCCCTCCTTTCCAAAATAGATG 58.240 41.667 0.00 0.00 0.00 2.90
1288 1292 5.492524 ACTCCCTCCTTTCCAAAATAGATGA 59.507 40.000 0.00 0.00 0.00 2.92
1289 1293 5.755849 TCCCTCCTTTCCAAAATAGATGAC 58.244 41.667 0.00 0.00 0.00 3.06
1290 1294 4.889995 CCCTCCTTTCCAAAATAGATGACC 59.110 45.833 0.00 0.00 0.00 4.02
1291 1295 4.889995 CCTCCTTTCCAAAATAGATGACCC 59.110 45.833 0.00 0.00 0.00 4.46
1292 1296 5.509498 CTCCTTTCCAAAATAGATGACCCA 58.491 41.667 0.00 0.00 0.00 4.51
1293 1297 5.898120 TCCTTTCCAAAATAGATGACCCAA 58.102 37.500 0.00 0.00 0.00 4.12
1294 1298 5.714806 TCCTTTCCAAAATAGATGACCCAAC 59.285 40.000 0.00 0.00 0.00 3.77
1295 1299 5.716703 CCTTTCCAAAATAGATGACCCAACT 59.283 40.000 0.00 0.00 0.00 3.16
1296 1300 6.211384 CCTTTCCAAAATAGATGACCCAACTT 59.789 38.462 0.00 0.00 0.00 2.66
1297 1301 7.256296 CCTTTCCAAAATAGATGACCCAACTTT 60.256 37.037 0.00 0.00 0.00 2.66
1298 1302 8.713708 TTTCCAAAATAGATGACCCAACTTTA 57.286 30.769 0.00 0.00 0.00 1.85
1299 1303 7.938140 TCCAAAATAGATGACCCAACTTTAG 57.062 36.000 0.00 0.00 0.00 1.85
1300 1304 7.466804 TCCAAAATAGATGACCCAACTTTAGT 58.533 34.615 0.00 0.00 0.00 2.24
1301 1305 8.607713 TCCAAAATAGATGACCCAACTTTAGTA 58.392 33.333 0.00 0.00 0.00 1.82
1302 1306 8.674607 CCAAAATAGATGACCCAACTTTAGTAC 58.325 37.037 0.00 0.00 0.00 2.73
1303 1307 9.226606 CAAAATAGATGACCCAACTTTAGTACA 57.773 33.333 0.00 0.00 0.00 2.90
1304 1308 9.802039 AAAATAGATGACCCAACTTTAGTACAA 57.198 29.630 0.00 0.00 0.00 2.41
1305 1309 9.802039 AAATAGATGACCCAACTTTAGTACAAA 57.198 29.630 0.00 0.00 0.00 2.83
1306 1310 9.449719 AATAGATGACCCAACTTTAGTACAAAG 57.550 33.333 13.08 13.08 0.00 2.77
1307 1311 6.838382 AGATGACCCAACTTTAGTACAAAGT 58.162 36.000 14.04 14.04 41.82 2.66
1309 1313 8.434392 AGATGACCCAACTTTAGTACAAAGTTA 58.566 33.333 23.56 14.79 45.57 2.24
1310 1314 8.617290 ATGACCCAACTTTAGTACAAAGTTAG 57.383 34.615 23.56 20.79 45.57 2.34
1311 1315 7.567458 TGACCCAACTTTAGTACAAAGTTAGT 58.433 34.615 23.56 22.58 45.57 2.24
1312 1316 8.703743 TGACCCAACTTTAGTACAAAGTTAGTA 58.296 33.333 23.56 14.85 45.57 1.82
1313 1317 8.893219 ACCCAACTTTAGTACAAAGTTAGTAC 57.107 34.615 23.56 0.00 45.57 2.73
1314 1318 8.485392 ACCCAACTTTAGTACAAAGTTAGTACA 58.515 33.333 23.56 0.00 45.57 2.90
1315 1319 9.328845 CCCAACTTTAGTACAAAGTTAGTACAA 57.671 33.333 23.56 0.00 45.57 2.41
1324 1328 9.310716 AGTACAAAGTTAGTACAAAGTTGAGTC 57.689 33.333 6.30 0.00 43.24 3.36
1325 1329 9.090692 GTACAAAGTTAGTACAAAGTTGAGTCA 57.909 33.333 0.00 0.00 41.08 3.41
1326 1330 8.732746 ACAAAGTTAGTACAAAGTTGAGTCAT 57.267 30.769 0.00 0.00 0.00 3.06
1327 1331 8.827677 ACAAAGTTAGTACAAAGTTGAGTCATC 58.172 33.333 0.00 0.00 0.00 2.92
1328 1332 9.046296 CAAAGTTAGTACAAAGTTGAGTCATCT 57.954 33.333 0.00 0.00 0.00 2.90
1335 1339 9.003658 AGTACAAAGTTGAGTCATCTATTTTGG 57.996 33.333 14.35 0.00 40.00 3.28
1336 1340 8.999431 GTACAAAGTTGAGTCATCTATTTTGGA 58.001 33.333 14.35 6.88 40.00 3.53
1337 1341 8.463930 ACAAAGTTGAGTCATCTATTTTGGAA 57.536 30.769 14.35 0.00 40.00 3.53
1338 1342 8.352942 ACAAAGTTGAGTCATCTATTTTGGAAC 58.647 33.333 14.35 0.00 40.00 3.62
1339 1343 6.727824 AGTTGAGTCATCTATTTTGGAACG 57.272 37.500 1.70 0.00 0.00 3.95
1340 1344 5.643777 AGTTGAGTCATCTATTTTGGAACGG 59.356 40.000 1.70 0.00 0.00 4.44
1341 1345 5.414789 TGAGTCATCTATTTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69
1342 1346 5.419542 TGAGTCATCTATTTTGGAACGGAG 58.580 41.667 0.00 0.00 0.00 4.63
1343 1347 4.770795 AGTCATCTATTTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
1344 1348 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
1345 1349 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
1358 1362 2.296471 ACGGAGGGACTATTTAGCATCG 59.704 50.000 0.00 0.00 41.55 3.84
1386 1390 1.522668 TCTGATTGGCTGGTTTCGTG 58.477 50.000 0.00 0.00 0.00 4.35
1541 1545 9.137459 TCAGAATACTCTACCTTGGATTCTTAG 57.863 37.037 0.00 0.00 32.66 2.18
1610 1614 1.852157 TTGGTGGGAGGGAGCATGTC 61.852 60.000 0.00 0.00 0.00 3.06
1658 1662 4.273148 TCTCCTGTTAGAAGCCTCAAAC 57.727 45.455 0.00 0.00 0.00 2.93
1673 1677 0.392998 CAAACGGTGATCCAGGGGAG 60.393 60.000 0.00 0.00 34.05 4.30
1751 1755 1.949465 AGTCGTTGTTTGAGACCCAC 58.051 50.000 0.00 0.00 35.65 4.61
1774 1778 0.462581 ATGGCACGCACTGAGGTATG 60.463 55.000 0.00 0.00 0.00 2.39
1809 1816 4.541705 TGATCTTTTTGTTGGGGAGTCAA 58.458 39.130 0.00 0.00 0.00 3.18
1820 1827 5.827797 TGTTGGGGAGTCAATTATGATTAGC 59.172 40.000 0.00 0.00 38.01 3.09
1825 1832 5.767168 GGGAGTCAATTATGATTAGCTGCTT 59.233 40.000 7.79 0.00 38.01 3.91
1831 1838 7.533222 GTCAATTATGATTAGCTGCTTGATTCG 59.467 37.037 7.79 0.00 38.01 3.34
1861 1868 3.130869 TGACATAGCATGTTTCCATTGGC 59.869 43.478 0.00 0.00 45.03 4.52
1977 1985 3.374220 TCGGTAACAGAAGCTCGAAAA 57.626 42.857 0.00 0.00 0.00 2.29
2008 2016 5.593679 AAGCTTGCGGAGTATACTTTCTA 57.406 39.130 6.88 0.00 0.00 2.10
2011 2019 6.583562 AGCTTGCGGAGTATACTTTCTATTT 58.416 36.000 6.88 0.00 0.00 1.40
2106 2114 1.334869 GTTGCACACCTGAAGGAGTTG 59.665 52.381 2.62 0.00 36.88 3.16
2154 2162 3.253677 ACAAGATATCGACGGGTCTGATC 59.746 47.826 0.00 0.00 0.00 2.92
2230 2238 5.375417 TCACAGTATTCCATGCTTTTGTG 57.625 39.130 0.00 0.00 36.82 3.33
2382 2391 4.982999 TGATTGTAACAGAGAGCGAGTAC 58.017 43.478 0.00 0.00 0.00 2.73
2394 2403 4.499183 AGAGCGAGTACAGGAAAAATGAG 58.501 43.478 0.00 0.00 0.00 2.90
2455 2464 4.235079 AGCCAGCAACCTGAAATACATA 57.765 40.909 0.00 0.00 41.77 2.29
2514 2523 1.442769 TGCTTCGCAGATGTCTTTCC 58.557 50.000 0.00 0.00 35.04 3.13
2584 2593 8.546322 TCCTTCATCTATAGCAATGCAGATATT 58.454 33.333 8.35 0.00 0.00 1.28
2629 2638 6.889198 TGCTATTACAGGCTAGAGTCAAAAT 58.111 36.000 0.00 0.00 0.00 1.82
2630 2639 6.763135 TGCTATTACAGGCTAGAGTCAAAATG 59.237 38.462 0.00 0.00 0.00 2.32
2685 2694 1.134580 CCGATCCAGATGTTGCAGACT 60.135 52.381 0.00 0.00 0.00 3.24
2690 2699 4.128925 TCCAGATGTTGCAGACTATGTC 57.871 45.455 0.00 0.00 0.00 3.06
2708 2717 1.075601 TCCTTGATTTCCTGTGGCCT 58.924 50.000 3.32 0.00 0.00 5.19
2758 2767 9.498176 GGTAAAACTACCAAAGAGATTCTTGTA 57.502 33.333 0.00 0.00 36.71 2.41
2782 2791 4.021104 TCCACTTCTGTCCACTTGATACTG 60.021 45.833 0.00 0.00 0.00 2.74
2790 2799 6.663523 TCTGTCCACTTGATACTGTAGATTCA 59.336 38.462 0.00 0.00 0.00 2.57
2826 2835 6.670077 TTTTTCGCAAGCCAAATAAAGTTT 57.330 29.167 0.00 0.00 37.18 2.66
2849 2858 2.777114 TCTTATGGGATGCTGTTGCCTA 59.223 45.455 0.00 0.00 38.71 3.93
2866 2875 3.765511 TGCCTAAATTGCTTCAGAATGCT 59.234 39.130 6.27 0.00 34.76 3.79
2893 2902 3.711190 GCCCCCTTAAAATGGATTCATGT 59.289 43.478 0.00 0.00 33.18 3.21
3025 3034 5.048083 ACGTGATGCATATTGGAAGTGTTTT 60.048 36.000 0.00 0.00 0.00 2.43
3064 3073 5.163581 CCAGGATAATGAGGTTTGCTCTTTG 60.164 44.000 0.00 0.00 0.00 2.77
3231 3240 3.365472 AGGTTTGTGATAAAGGCATCCC 58.635 45.455 0.00 0.00 0.00 3.85
3413 3422 5.063312 CGTTGAGGTTTTTGTTGATTTTGCT 59.937 36.000 0.00 0.00 0.00 3.91
3414 3423 6.402011 CGTTGAGGTTTTTGTTGATTTTGCTT 60.402 34.615 0.00 0.00 0.00 3.91
3428 3437 7.042797 TGATTTTGCTTCTTCAAAACTAGCT 57.957 32.000 4.11 0.00 45.28 3.32
3446 3455 0.725686 CTGAAGCTGCTGATGAACCG 59.274 55.000 1.35 0.00 0.00 4.44
3558 3567 3.583086 ACGAAGAAGAGGGGATTCAAGAA 59.417 43.478 0.00 0.00 0.00 2.52
3590 3599 7.291182 ACAGATAGGCAGACTAATGAACCTAAT 59.709 37.037 5.98 0.00 34.79 1.73
3636 3645 5.898120 TGAAATTACATGAAAAGAGGGGGA 58.102 37.500 0.00 0.00 0.00 4.81
3754 3763 7.067859 CCAATCTAAATTGAATCAGAGCTCCAA 59.932 37.037 10.93 7.47 44.25 3.53
3782 3791 3.857157 TCCTTTGTACTGAAAGCCTGT 57.143 42.857 0.00 0.00 37.60 4.00
3813 3822 5.724328 TGTTCAGATCACTTACAGCTAAGG 58.276 41.667 0.00 0.00 34.62 2.69
3820 3829 3.323691 TCACTTACAGCTAAGGCAAGTGA 59.676 43.478 12.16 12.16 46.73 3.41
3850 3859 4.921470 TTGGAAATCTAAGAAGAACGCG 57.079 40.909 3.53 3.53 34.73 6.01
3911 3920 5.567037 AGCTCATATGGTGGCTTATGTTA 57.433 39.130 2.13 0.00 32.61 2.41
3964 3973 2.243736 AGAACACAACCCAAGGGAAGAA 59.756 45.455 13.15 0.00 38.96 2.52
4063 4072 5.800941 CAGAAGACCGTTCTAGTGACATTAC 59.199 44.000 0.00 0.00 0.00 1.89
4159 4168 2.758736 ACTGTGACTGAGAATCCAGC 57.241 50.000 0.00 0.00 37.68 4.85
4215 4224 5.714047 TGAAGATGTTATATGCTAGAGCCG 58.286 41.667 0.00 0.00 41.18 5.52
4216 4225 4.116747 AGATGTTATATGCTAGAGCCGC 57.883 45.455 0.00 0.00 41.18 6.53
4222 4442 0.601046 TATGCTAGAGCCGCACATGC 60.601 55.000 0.00 0.00 40.65 4.06
4249 4469 5.736951 TGTTGGCCTGCTTATGTTATTTT 57.263 34.783 3.32 0.00 0.00 1.82
4253 4473 3.450817 GGCCTGCTTATGTTATTTTGGGT 59.549 43.478 0.00 0.00 0.00 4.51
4272 4492 1.388547 TGGAAGTTGTGCCACAGTTC 58.611 50.000 11.62 11.62 0.00 3.01
4288 4508 3.165875 CAGTTCAGTTCTACTCCCTCCA 58.834 50.000 0.00 0.00 0.00 3.86
4354 4574 9.425577 ACTTGCTTAAGTTTGACTAACTCTATC 57.574 33.333 4.02 0.00 46.34 2.08
4372 4592 8.723942 ACTCTATCGAAAAATGTGCTAAGATT 57.276 30.769 0.00 0.00 0.00 2.40
4669 4895 7.059788 TGCCAGATACCATGTTATGTGTTAAT 58.940 34.615 6.65 0.00 0.00 1.40
4749 4975 9.736023 CTTAATGGTTTGCTTTGGTAGATAATC 57.264 33.333 0.00 0.00 0.00 1.75
4937 5163 3.125316 CCGCACAAGAGATGGTAAAACTC 59.875 47.826 0.00 0.00 0.00 3.01
5006 5232 6.348498 TGAGATGACAACAGAGTTGAAGAAA 58.652 36.000 15.99 0.00 0.00 2.52
5126 5352 6.343703 TCACATGGTTGAGTCATCTCTTATG 58.656 40.000 0.00 1.22 40.98 1.90
5165 5391 2.754552 TGGTAAGCTTAAGGCAATGCTG 59.245 45.455 7.99 0.00 44.79 4.41
5177 5403 3.947834 AGGCAATGCTGACATTAGGTTAC 59.052 43.478 4.82 0.00 44.83 2.50
5192 5418 4.388378 AGGTTACGGCTCTTCTAATGTC 57.612 45.455 0.00 0.00 0.00 3.06
5201 5427 3.003897 GCTCTTCTAATGTCGACGAGGAT 59.996 47.826 11.62 0.00 30.14 3.24
5255 5481 1.754226 CTGGAGGAAGCACTCTACTCC 59.246 57.143 0.00 0.00 42.43 3.85
5279 5505 6.596888 CCAGATCAACATCAGTAGTTCATGTT 59.403 38.462 0.00 0.00 40.61 2.71
5382 5608 5.689383 TCAGTCTGATTTTACCTTTGCAC 57.311 39.130 0.00 0.00 0.00 4.57
5584 5810 5.844004 TGTCTTTACACTTCAAGAGGTCTC 58.156 41.667 0.00 0.00 29.46 3.36
5605 5833 7.042335 GTCTCTGGCACTATAAATACACTGTT 58.958 38.462 0.00 0.00 0.00 3.16
5622 5850 1.828595 TGTTCACGCTTATGGCTCCTA 59.171 47.619 0.00 0.00 39.13 2.94
5624 5852 3.060602 GTTCACGCTTATGGCTCCTATC 58.939 50.000 0.00 0.00 39.13 2.08
5626 5854 2.035961 TCACGCTTATGGCTCCTATCAC 59.964 50.000 0.00 0.00 39.13 3.06
5631 5859 3.262915 GCTTATGGCTCCTATCACCTCAT 59.737 47.826 0.00 0.00 38.06 2.90
5637 5865 6.266131 TGGCTCCTATCACCTCATTTTAAT 57.734 37.500 0.00 0.00 0.00 1.40
5640 5868 7.072454 TGGCTCCTATCACCTCATTTTAATAGT 59.928 37.037 0.00 0.00 0.00 2.12
5663 5891 7.309920 AGTTTCTTGTTTTCTCGTTTGCTTTA 58.690 30.769 0.00 0.00 0.00 1.85
5757 5985 6.097412 GCATTCCTGATCTTATTTTCCAGGTT 59.903 38.462 0.00 0.00 43.54 3.50
5793 6021 8.779354 AGAAGTACCTAATTCAGTTAAGCAAG 57.221 34.615 0.00 0.00 33.12 4.01
5913 6141 1.965754 ATTCTCCTCCAGCGAGTGCC 61.966 60.000 0.00 0.00 44.31 5.01
5947 6175 0.547471 TGACCCTGAGGAGGATGCAA 60.547 55.000 0.00 0.00 42.93 4.08
5966 6194 3.365364 GCAAAAGAAGGTCCAGATGTTCG 60.365 47.826 0.00 0.00 0.00 3.95
5967 6195 3.771577 AAAGAAGGTCCAGATGTTCGT 57.228 42.857 0.00 0.00 0.00 3.85
5988 6216 0.529378 CTGATGAAAACCTGCAGGCC 59.471 55.000 33.06 18.81 39.32 5.19
6007 6235 1.881324 CCAGTGCACAACATGATGACA 59.119 47.619 21.04 4.79 0.00 3.58
6030 6261 3.493350 CCGTCCAAGATTCTGAATCCGAT 60.493 47.826 23.12 10.11 38.71 4.18
6059 6290 8.062536 AGAAGAGGAGGAAGTATTAGTACACAT 58.937 37.037 0.00 0.00 33.09 3.21
6069 6300 7.045126 AGTATTAGTACACATGAAGAGAGCC 57.955 40.000 0.00 0.00 33.09 4.70
6130 6361 5.542251 GGAGAAGAGGAGGAAGTATTAGCAT 59.458 44.000 0.00 0.00 0.00 3.79
6135 6366 2.810852 GGAGGAAGTATTAGCATGCAGC 59.189 50.000 21.98 4.71 46.19 5.25
6152 6383 3.070018 GCAGCAAGAGAGCTAAGACAAA 58.930 45.455 0.00 0.00 44.54 2.83
6282 6513 2.622942 TGCTGAAGGCGAGTGAATTTTT 59.377 40.909 0.00 0.00 45.43 1.94
6314 6545 7.353497 CAGCAATCAGAAAGCATAAGTCATAG 58.647 38.462 0.84 0.00 0.00 2.23
6316 6547 7.555554 AGCAATCAGAAAGCATAAGTCATAGTT 59.444 33.333 0.84 0.00 0.00 2.24
6387 6618 7.708998 TGTTGGTTAACCTGTTGATTTTAGAC 58.291 34.615 24.78 0.02 35.92 2.59
6388 6619 7.339721 TGTTGGTTAACCTGTTGATTTTAGACA 59.660 33.333 24.78 2.53 35.92 3.41
6444 6675 5.356882 TGCTCTTGGTTACATTTTTCTCG 57.643 39.130 0.00 0.00 0.00 4.04
6502 6895 7.064847 AGCGAGACATATACTACTGTACTATGC 59.935 40.741 0.00 0.00 31.28 3.14
6527 6920 6.761312 TGGCAATCTTTGATGACTGAATTTT 58.239 32.000 0.00 0.00 0.00 1.82
6560 6953 5.593095 TGTCTTACTGTACTTCACTCACTGT 59.407 40.000 0.00 0.00 0.00 3.55
6571 6964 2.036475 TCACTCACTGTCAAGAAGAGCC 59.964 50.000 0.00 0.00 34.55 4.70
6586 6979 4.287067 AGAAGAGCCTCCTGTATTGAAACA 59.713 41.667 0.00 0.00 0.00 2.83
6593 6986 5.562890 GCCTCCTGTATTGAAACAACTTGAC 60.563 44.000 0.00 0.00 0.00 3.18
6594 6987 5.334105 CCTCCTGTATTGAAACAACTTGACG 60.334 44.000 0.00 0.00 0.00 4.35
6607 7000 5.001232 ACAACTTGACGTATATTGGCTGTT 58.999 37.500 0.00 0.00 0.00 3.16
6627 7520 1.498865 GACGGGGCAGCATATTGTCG 61.499 60.000 0.00 0.00 0.00 4.35
6663 7564 2.514160 TGTCTAGCACCCTATCAGGAGA 59.486 50.000 0.00 0.00 37.67 3.71
6711 7615 1.009829 GCGGTAGCTGATGTTTCTGG 58.990 55.000 0.00 0.00 41.01 3.86
6803 7708 2.539338 CCGGACCCAACACAACACG 61.539 63.158 0.00 0.00 0.00 4.49
6804 7709 2.539338 CGGACCCAACACAACACGG 61.539 63.158 0.00 0.00 0.00 4.94
6847 7752 1.234821 GCACAAACCCATTCGAGTCA 58.765 50.000 0.00 0.00 0.00 3.41
7016 7921 1.068281 CGATCTGACCCATCTCCTGTG 59.932 57.143 0.00 0.00 0.00 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.671177 GCTAGGCGCCGCACATATG 61.671 63.158 23.20 0.00 0.00 1.78
20 21 2.357517 GCTAGGCGCCGCACATAT 60.358 61.111 23.20 3.61 0.00 1.78
21 22 3.499929 GAGCTAGGCGCCGCACATA 62.500 63.158 25.28 10.33 40.39 2.29
22 23 4.899239 GAGCTAGGCGCCGCACAT 62.899 66.667 25.28 9.68 40.39 3.21
32 33 4.277593 CAGCGCCTCCGAGCTAGG 62.278 72.222 6.52 6.52 44.07 3.02
33 34 4.940593 GCAGCGCCTCCGAGCTAG 62.941 72.222 2.29 0.00 44.07 3.42
81 82 3.660111 GTTGCACGCCAGTCCACC 61.660 66.667 0.00 0.00 0.00 4.61
82 83 4.012895 CGTTGCACGCCAGTCCAC 62.013 66.667 0.00 0.00 33.65 4.02
92 93 3.649986 AGTTCAGCGGCGTTGCAC 61.650 61.111 19.31 18.35 37.31 4.57
93 94 3.648982 CAGTTCAGCGGCGTTGCA 61.649 61.111 19.31 5.22 37.31 4.08
94 95 4.389576 CCAGTTCAGCGGCGTTGC 62.390 66.667 19.31 6.05 0.00 4.17
95 96 2.664851 TCCAGTTCAGCGGCGTTG 60.665 61.111 18.06 18.06 0.00 4.10
96 97 2.665185 GTCCAGTTCAGCGGCGTT 60.665 61.111 9.37 0.00 0.00 4.84
99 100 2.665185 AACGTCCAGTTCAGCGGC 60.665 61.111 0.00 0.00 39.16 6.53
100 101 2.954753 GCAACGTCCAGTTCAGCGG 61.955 63.158 0.00 0.00 42.02 5.52
101 102 2.243957 TGCAACGTCCAGTTCAGCG 61.244 57.895 0.00 0.00 42.02 5.18
102 103 1.279840 GTGCAACGTCCAGTTCAGC 59.720 57.895 0.00 0.00 42.02 4.26
103 104 1.831389 CGGTGCAACGTCCAGTTCAG 61.831 60.000 17.95 0.00 42.02 3.02
104 105 1.885388 CGGTGCAACGTCCAGTTCA 60.885 57.895 17.95 0.00 42.02 3.18
105 106 0.598158 TACGGTGCAACGTCCAGTTC 60.598 55.000 36.14 0.00 45.08 3.01
106 107 0.599204 CTACGGTGCAACGTCCAGTT 60.599 55.000 36.14 11.01 45.08 3.16
107 108 1.006571 CTACGGTGCAACGTCCAGT 60.007 57.895 36.14 11.89 45.08 4.00
108 109 1.736645 CCTACGGTGCAACGTCCAG 60.737 63.158 36.14 25.95 45.08 3.86
109 110 1.537814 ATCCTACGGTGCAACGTCCA 61.538 55.000 36.14 19.13 45.08 4.02
110 111 1.082117 CATCCTACGGTGCAACGTCC 61.082 60.000 36.14 7.11 45.08 4.79
111 112 0.389426 ACATCCTACGGTGCAACGTC 60.389 55.000 36.14 0.00 45.08 4.34
113 114 1.358725 CCACATCCTACGGTGCAACG 61.359 60.000 25.19 25.19 38.12 4.10
114 115 1.644786 GCCACATCCTACGGTGCAAC 61.645 60.000 0.00 0.00 33.72 4.17
115 116 1.376683 GCCACATCCTACGGTGCAA 60.377 57.895 0.00 0.00 33.72 4.08
116 117 2.267642 GCCACATCCTACGGTGCA 59.732 61.111 0.00 0.00 33.72 4.57
117 118 2.890474 CGCCACATCCTACGGTGC 60.890 66.667 0.00 0.00 33.72 5.01
118 119 2.890474 GCGCCACATCCTACGGTG 60.890 66.667 0.00 0.00 34.82 4.94
119 120 4.157120 GGCGCCACATCCTACGGT 62.157 66.667 24.80 0.00 0.00 4.83
120 121 3.849951 AGGCGCCACATCCTACGG 61.850 66.667 31.54 0.00 0.00 4.02
121 122 2.586079 CAGGCGCCACATCCTACG 60.586 66.667 31.54 0.63 0.00 3.51
122 123 2.897350 GCAGGCGCCACATCCTAC 60.897 66.667 31.54 4.15 0.00 3.18
123 124 4.529219 CGCAGGCGCCACATCCTA 62.529 66.667 31.54 0.00 33.11 2.94
139 140 0.802994 TTTGTATAGCGCCCGTCACG 60.803 55.000 2.29 0.00 0.00 4.35
140 141 1.361793 TTTTGTATAGCGCCCGTCAC 58.638 50.000 2.29 0.00 0.00 3.67
141 142 2.096220 TTTTTGTATAGCGCCCGTCA 57.904 45.000 2.29 0.00 0.00 4.35
172 173 3.134574 ACTGCCCGTGAAACTATTTCA 57.865 42.857 0.00 0.00 46.68 2.69
173 174 3.500680 TGAACTGCCCGTGAAACTATTTC 59.499 43.478 0.00 0.00 40.08 2.17
174 175 3.482436 TGAACTGCCCGTGAAACTATTT 58.518 40.909 0.00 0.00 31.75 1.40
175 176 3.134574 TGAACTGCCCGTGAAACTATT 57.865 42.857 0.00 0.00 31.75 1.73
176 177 2.851263 TGAACTGCCCGTGAAACTAT 57.149 45.000 0.00 0.00 31.75 2.12
177 178 2.851263 ATGAACTGCCCGTGAAACTA 57.149 45.000 0.00 0.00 31.75 2.24
178 179 1.981256 AATGAACTGCCCGTGAAACT 58.019 45.000 0.00 0.00 31.75 2.66
179 180 3.190535 ACATAATGAACTGCCCGTGAAAC 59.809 43.478 0.00 0.00 0.00 2.78
180 181 3.190327 CACATAATGAACTGCCCGTGAAA 59.810 43.478 0.00 0.00 0.00 2.69
181 182 2.746904 CACATAATGAACTGCCCGTGAA 59.253 45.455 0.00 0.00 0.00 3.18
182 183 2.027653 TCACATAATGAACTGCCCGTGA 60.028 45.455 0.00 0.00 33.02 4.35
183 184 2.355197 TCACATAATGAACTGCCCGTG 58.645 47.619 0.00 0.00 33.02 4.94
184 185 2.779755 TCACATAATGAACTGCCCGT 57.220 45.000 0.00 0.00 33.02 5.28
193 194 4.776349 ACTGCCCGTAATTCACATAATGA 58.224 39.130 0.00 0.00 34.65 2.57
194 195 5.065859 TGAACTGCCCGTAATTCACATAATG 59.934 40.000 0.00 0.00 0.00 1.90
195 196 5.189928 TGAACTGCCCGTAATTCACATAAT 58.810 37.500 0.00 0.00 0.00 1.28
196 197 4.580868 TGAACTGCCCGTAATTCACATAA 58.419 39.130 0.00 0.00 0.00 1.90
197 198 4.209307 TGAACTGCCCGTAATTCACATA 57.791 40.909 0.00 0.00 0.00 2.29
198 199 3.066291 TGAACTGCCCGTAATTCACAT 57.934 42.857 0.00 0.00 0.00 3.21
199 200 2.552599 TGAACTGCCCGTAATTCACA 57.447 45.000 0.00 0.00 0.00 3.58
200 201 5.065988 ACATAATGAACTGCCCGTAATTCAC 59.934 40.000 0.00 0.00 34.08 3.18
201 202 5.065859 CACATAATGAACTGCCCGTAATTCA 59.934 40.000 0.00 0.00 35.64 2.57
202 203 5.295787 TCACATAATGAACTGCCCGTAATTC 59.704 40.000 0.00 0.00 33.02 2.17
203 204 5.189928 TCACATAATGAACTGCCCGTAATT 58.810 37.500 0.00 0.00 33.02 1.40
204 205 4.776349 TCACATAATGAACTGCCCGTAAT 58.224 39.130 0.00 0.00 33.02 1.89
205 206 4.209307 TCACATAATGAACTGCCCGTAA 57.791 40.909 0.00 0.00 33.02 3.18
206 207 3.897141 TCACATAATGAACTGCCCGTA 57.103 42.857 0.00 0.00 33.02 4.02
207 208 2.779755 TCACATAATGAACTGCCCGT 57.220 45.000 0.00 0.00 33.02 5.28
213 214 8.729756 TGACGAAATCAATTCACATAATGAACT 58.270 29.630 0.00 0.00 40.48 3.01
214 215 8.894409 TGACGAAATCAATTCACATAATGAAC 57.106 30.769 0.00 0.00 40.48 3.18
228 229 6.912051 CAGTTTTGATCTGTTGACGAAATCAA 59.088 34.615 0.00 0.00 45.39 2.57
229 230 6.038161 ACAGTTTTGATCTGTTGACGAAATCA 59.962 34.615 0.00 0.00 42.50 2.57
230 231 6.358030 CACAGTTTTGATCTGTTGACGAAATC 59.642 38.462 0.00 0.00 43.14 2.17
231 232 6.038161 TCACAGTTTTGATCTGTTGACGAAAT 59.962 34.615 0.00 0.00 43.14 2.17
232 233 5.352846 TCACAGTTTTGATCTGTTGACGAAA 59.647 36.000 0.00 0.00 43.14 3.46
233 234 4.873259 TCACAGTTTTGATCTGTTGACGAA 59.127 37.500 0.00 0.00 43.14 3.85
234 235 4.438148 TCACAGTTTTGATCTGTTGACGA 58.562 39.130 0.00 0.00 43.14 4.20
235 236 4.794248 TCACAGTTTTGATCTGTTGACG 57.206 40.909 0.00 0.00 43.14 4.35
236 237 7.992180 AATTTCACAGTTTTGATCTGTTGAC 57.008 32.000 0.00 0.00 43.14 3.18
237 238 7.010367 GCAAATTTCACAGTTTTGATCTGTTGA 59.990 33.333 0.00 0.00 43.14 3.18
238 239 7.121272 GCAAATTTCACAGTTTTGATCTGTTG 58.879 34.615 0.00 0.00 43.14 3.33
239 240 6.258507 GGCAAATTTCACAGTTTTGATCTGTT 59.741 34.615 0.00 0.00 43.14 3.16
240 241 5.754890 GGCAAATTTCACAGTTTTGATCTGT 59.245 36.000 0.00 0.00 45.43 3.41
241 242 5.107760 CGGCAAATTTCACAGTTTTGATCTG 60.108 40.000 0.00 0.00 38.68 2.90
242 243 4.984161 CGGCAAATTTCACAGTTTTGATCT 59.016 37.500 0.00 0.00 33.24 2.75
243 244 4.981674 TCGGCAAATTTCACAGTTTTGATC 59.018 37.500 0.39 0.00 33.24 2.92
244 245 4.942852 TCGGCAAATTTCACAGTTTTGAT 58.057 34.783 0.39 0.00 33.24 2.57
245 246 4.377839 TCGGCAAATTTCACAGTTTTGA 57.622 36.364 0.39 0.00 33.24 2.69
246 247 4.744137 TGATCGGCAAATTTCACAGTTTTG 59.256 37.500 0.00 0.00 34.30 2.44
247 248 4.942852 TGATCGGCAAATTTCACAGTTTT 58.057 34.783 0.00 0.00 0.00 2.43
248 249 4.549458 CTGATCGGCAAATTTCACAGTTT 58.451 39.130 0.00 0.00 0.00 2.66
249 250 3.057315 CCTGATCGGCAAATTTCACAGTT 60.057 43.478 0.00 0.00 0.00 3.16
250 251 2.489329 CCTGATCGGCAAATTTCACAGT 59.511 45.455 0.00 0.00 0.00 3.55
251 252 2.749076 TCCTGATCGGCAAATTTCACAG 59.251 45.455 0.00 0.00 0.00 3.66
252 253 2.789213 TCCTGATCGGCAAATTTCACA 58.211 42.857 0.00 0.00 0.00 3.58
253 254 5.273944 GTTATCCTGATCGGCAAATTTCAC 58.726 41.667 0.00 0.00 0.00 3.18
254 255 4.035091 CGTTATCCTGATCGGCAAATTTCA 59.965 41.667 0.00 0.00 0.00 2.69
255 256 4.035208 ACGTTATCCTGATCGGCAAATTTC 59.965 41.667 0.00 0.00 0.00 2.17
256 257 3.945285 ACGTTATCCTGATCGGCAAATTT 59.055 39.130 0.00 0.00 0.00 1.82
257 258 3.541632 ACGTTATCCTGATCGGCAAATT 58.458 40.909 0.00 0.00 0.00 1.82
258 259 3.131396 GACGTTATCCTGATCGGCAAAT 58.869 45.455 0.00 0.00 0.00 2.32
259 260 2.546778 GACGTTATCCTGATCGGCAAA 58.453 47.619 0.00 0.00 0.00 3.68
260 261 1.535226 CGACGTTATCCTGATCGGCAA 60.535 52.381 0.00 0.00 0.00 4.52
261 262 0.030235 CGACGTTATCCTGATCGGCA 59.970 55.000 0.00 0.00 0.00 5.69
262 263 0.309922 TCGACGTTATCCTGATCGGC 59.690 55.000 0.00 0.00 33.66 5.54
263 264 2.382519 GTTCGACGTTATCCTGATCGG 58.617 52.381 0.00 0.00 33.66 4.18
264 265 2.223409 TGGTTCGACGTTATCCTGATCG 60.223 50.000 0.00 0.00 0.00 3.69
265 266 3.431922 TGGTTCGACGTTATCCTGATC 57.568 47.619 0.00 0.00 0.00 2.92
266 267 3.880047 TTGGTTCGACGTTATCCTGAT 57.120 42.857 0.00 0.00 0.00 2.90
267 268 3.243805 TGTTTGGTTCGACGTTATCCTGA 60.244 43.478 0.00 0.00 0.00 3.86
268 269 3.061322 TGTTTGGTTCGACGTTATCCTG 58.939 45.455 0.00 0.00 0.00 3.86
269 270 3.389925 TGTTTGGTTCGACGTTATCCT 57.610 42.857 0.00 0.00 0.00 3.24
270 271 3.666111 GCTTGTTTGGTTCGACGTTATCC 60.666 47.826 0.00 0.00 0.00 2.59
271 272 3.476181 GCTTGTTTGGTTCGACGTTATC 58.524 45.455 0.00 0.00 0.00 1.75
272 273 2.224784 GGCTTGTTTGGTTCGACGTTAT 59.775 45.455 0.00 0.00 0.00 1.89
273 274 1.598601 GGCTTGTTTGGTTCGACGTTA 59.401 47.619 0.00 0.00 0.00 3.18
274 275 0.379316 GGCTTGTTTGGTTCGACGTT 59.621 50.000 0.00 0.00 0.00 3.99
275 276 1.441732 GGGCTTGTTTGGTTCGACGT 61.442 55.000 0.00 0.00 0.00 4.34
276 277 1.164041 AGGGCTTGTTTGGTTCGACG 61.164 55.000 0.00 0.00 0.00 5.12
277 278 1.886886 TAGGGCTTGTTTGGTTCGAC 58.113 50.000 0.00 0.00 0.00 4.20
278 279 2.642154 TTAGGGCTTGTTTGGTTCGA 57.358 45.000 0.00 0.00 0.00 3.71
279 280 2.030274 CCTTTAGGGCTTGTTTGGTTCG 60.030 50.000 0.00 0.00 0.00 3.95
280 281 2.963101 ACCTTTAGGGCTTGTTTGGTTC 59.037 45.455 0.10 0.00 40.27 3.62
281 282 2.698274 CACCTTTAGGGCTTGTTTGGTT 59.302 45.455 0.10 0.00 40.27 3.67
282 283 2.316108 CACCTTTAGGGCTTGTTTGGT 58.684 47.619 0.10 0.00 40.27 3.67
283 284 1.000843 GCACCTTTAGGGCTTGTTTGG 59.999 52.381 0.10 0.00 40.27 3.28
284 285 1.686052 TGCACCTTTAGGGCTTGTTTG 59.314 47.619 0.10 0.00 40.27 2.93
285 286 1.963515 CTGCACCTTTAGGGCTTGTTT 59.036 47.619 0.10 0.00 40.27 2.83
286 287 1.620822 CTGCACCTTTAGGGCTTGTT 58.379 50.000 0.10 0.00 40.27 2.83
287 288 0.251341 CCTGCACCTTTAGGGCTTGT 60.251 55.000 0.10 0.00 40.27 3.16
288 289 0.038166 TCCTGCACCTTTAGGGCTTG 59.962 55.000 0.10 0.00 40.27 4.01
289 290 1.002857 ATCCTGCACCTTTAGGGCTT 58.997 50.000 0.10 0.00 40.27 4.35
290 291 0.548510 GATCCTGCACCTTTAGGGCT 59.451 55.000 0.10 0.00 40.27 5.19
291 292 0.255890 TGATCCTGCACCTTTAGGGC 59.744 55.000 0.10 1.93 40.27 5.19
292 293 3.303351 AATGATCCTGCACCTTTAGGG 57.697 47.619 0.10 0.00 40.27 3.53
323 324 3.254411 TCTTTTGTGTGTGTGTTTCTGCA 59.746 39.130 0.00 0.00 0.00 4.41
346 347 6.090783 GTGACACGAGAAGGTTTTTCTTTTT 58.909 36.000 0.00 0.00 0.00 1.94
348 349 4.201783 CGTGACACGAGAAGGTTTTTCTTT 60.202 41.667 23.39 0.00 46.05 2.52
349 350 3.308866 CGTGACACGAGAAGGTTTTTCTT 59.691 43.478 23.39 0.00 46.05 2.52
350 351 2.864343 CGTGACACGAGAAGGTTTTTCT 59.136 45.455 23.39 0.00 46.05 2.52
351 352 2.033151 CCGTGACACGAGAAGGTTTTTC 60.033 50.000 28.83 0.00 46.05 2.29
500 503 1.596934 GGACAGATTCCACGCTGGA 59.403 57.895 3.02 3.02 46.61 3.86
1014 1018 2.221299 AGGGTCCTGCTTAACCGCA 61.221 57.895 0.00 0.00 38.40 5.69
1075 1079 2.391724 AATCCGTTGAGCACACCCGT 62.392 55.000 0.00 0.00 0.00 5.28
1247 1251 5.551760 GGGAGTACATCTCACAACAAATG 57.448 43.478 0.00 0.00 45.30 2.32
1255 1259 3.133183 GGAAAGGAGGGAGTACATCTCAC 59.867 52.174 0.00 0.00 46.26 3.51
1265 1269 5.825151 GTCATCTATTTTGGAAAGGAGGGAG 59.175 44.000 0.00 0.00 0.00 4.30
1266 1270 5.340027 GGTCATCTATTTTGGAAAGGAGGGA 60.340 44.000 0.00 0.00 0.00 4.20
1267 1271 4.889995 GGTCATCTATTTTGGAAAGGAGGG 59.110 45.833 0.00 0.00 0.00 4.30
1268 1272 4.889995 GGGTCATCTATTTTGGAAAGGAGG 59.110 45.833 0.00 0.00 0.00 4.30
1269 1273 5.509498 TGGGTCATCTATTTTGGAAAGGAG 58.491 41.667 0.00 0.00 0.00 3.69
1270 1274 5.528600 TGGGTCATCTATTTTGGAAAGGA 57.471 39.130 0.00 0.00 0.00 3.36
1271 1275 5.716703 AGTTGGGTCATCTATTTTGGAAAGG 59.283 40.000 0.00 0.00 0.00 3.11
1272 1276 6.840780 AGTTGGGTCATCTATTTTGGAAAG 57.159 37.500 0.00 0.00 0.00 2.62
1273 1277 7.610580 AAAGTTGGGTCATCTATTTTGGAAA 57.389 32.000 0.00 0.00 0.00 3.13
1274 1278 7.947890 ACTAAAGTTGGGTCATCTATTTTGGAA 59.052 33.333 0.00 0.00 0.00 3.53
1275 1279 7.466804 ACTAAAGTTGGGTCATCTATTTTGGA 58.533 34.615 0.00 0.00 0.00 3.53
1276 1280 7.703058 ACTAAAGTTGGGTCATCTATTTTGG 57.297 36.000 0.00 0.00 0.00 3.28
1277 1281 9.226606 TGTACTAAAGTTGGGTCATCTATTTTG 57.773 33.333 0.00 0.00 0.00 2.44
1278 1282 9.802039 TTGTACTAAAGTTGGGTCATCTATTTT 57.198 29.630 0.00 0.00 0.00 1.82
1279 1283 9.802039 TTTGTACTAAAGTTGGGTCATCTATTT 57.198 29.630 0.00 0.00 0.00 1.40
1280 1284 9.449719 CTTTGTACTAAAGTTGGGTCATCTATT 57.550 33.333 0.00 0.00 0.00 1.73
1281 1285 8.603304 ACTTTGTACTAAAGTTGGGTCATCTAT 58.397 33.333 14.04 0.00 37.18 1.98
1282 1286 7.970102 ACTTTGTACTAAAGTTGGGTCATCTA 58.030 34.615 14.04 0.00 37.18 1.98
1283 1287 6.838382 ACTTTGTACTAAAGTTGGGTCATCT 58.162 36.000 14.04 0.00 37.18 2.90
1284 1288 7.506328 AACTTTGTACTAAAGTTGGGTCATC 57.494 36.000 23.48 0.00 45.58 2.92
1285 1289 8.215736 ACTAACTTTGTACTAAAGTTGGGTCAT 58.784 33.333 28.62 17.19 46.38 3.06
1286 1290 7.567458 ACTAACTTTGTACTAAAGTTGGGTCA 58.433 34.615 28.62 17.50 46.38 4.02
1287 1291 8.982685 GTACTAACTTTGTACTAAAGTTGGGTC 58.017 37.037 28.62 22.26 46.38 4.46
1288 1292 8.485392 TGTACTAACTTTGTACTAAAGTTGGGT 58.515 33.333 28.62 26.41 46.38 4.51
1289 1293 8.891671 TGTACTAACTTTGTACTAAAGTTGGG 57.108 34.615 28.62 24.26 46.38 4.12
1298 1302 9.310716 GACTCAACTTTGTACTAACTTTGTACT 57.689 33.333 12.73 0.00 40.44 2.73
1299 1303 9.090692 TGACTCAACTTTGTACTAACTTTGTAC 57.909 33.333 6.58 6.58 40.27 2.90
1300 1304 9.826574 ATGACTCAACTTTGTACTAACTTTGTA 57.173 29.630 0.00 0.00 0.00 2.41
1301 1305 8.732746 ATGACTCAACTTTGTACTAACTTTGT 57.267 30.769 0.00 0.00 0.00 2.83
1302 1306 9.046296 AGATGACTCAACTTTGTACTAACTTTG 57.954 33.333 0.00 0.00 0.00 2.77
1309 1313 9.003658 CCAAAATAGATGACTCAACTTTGTACT 57.996 33.333 0.00 0.00 0.00 2.73
1310 1314 8.999431 TCCAAAATAGATGACTCAACTTTGTAC 58.001 33.333 0.00 0.00 0.00 2.90
1311 1315 9.567776 TTCCAAAATAGATGACTCAACTTTGTA 57.432 29.630 0.00 0.00 0.00 2.41
1312 1316 8.352942 GTTCCAAAATAGATGACTCAACTTTGT 58.647 33.333 0.00 0.00 0.00 2.83
1313 1317 7.535258 CGTTCCAAAATAGATGACTCAACTTTG 59.465 37.037 0.00 0.00 0.00 2.77
1314 1318 7.308589 CCGTTCCAAAATAGATGACTCAACTTT 60.309 37.037 0.00 0.00 0.00 2.66
1315 1319 6.149474 CCGTTCCAAAATAGATGACTCAACTT 59.851 38.462 0.00 0.00 0.00 2.66
1316 1320 5.643777 CCGTTCCAAAATAGATGACTCAACT 59.356 40.000 0.00 0.00 0.00 3.16
1317 1321 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
1318 1322 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
1319 1323 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
1320 1324 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
1321 1325 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
1322 1326 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
1323 1327 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
1324 1328 3.877508 GTCCCTCCGTTCCAAAATAGATG 59.122 47.826 0.00 0.00 0.00 2.90
1325 1329 3.780850 AGTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
1326 1330 3.178865 AGTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
1327 1331 3.629142 AGTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
1328 1332 5.703730 AATAGTCCCTCCGTTCCAAAATA 57.296 39.130 0.00 0.00 0.00 1.40
1329 1333 4.586306 AATAGTCCCTCCGTTCCAAAAT 57.414 40.909 0.00 0.00 0.00 1.82
1330 1334 4.376225 AAATAGTCCCTCCGTTCCAAAA 57.624 40.909 0.00 0.00 0.00 2.44
1331 1335 4.624604 GCTAAATAGTCCCTCCGTTCCAAA 60.625 45.833 0.00 0.00 0.00 3.28
1332 1336 3.118519 GCTAAATAGTCCCTCCGTTCCAA 60.119 47.826 0.00 0.00 0.00 3.53
1333 1337 2.433239 GCTAAATAGTCCCTCCGTTCCA 59.567 50.000 0.00 0.00 0.00 3.53
1334 1338 2.433239 TGCTAAATAGTCCCTCCGTTCC 59.567 50.000 0.00 0.00 0.00 3.62
1335 1339 3.814005 TGCTAAATAGTCCCTCCGTTC 57.186 47.619 0.00 0.00 0.00 3.95
1336 1340 3.243771 CGATGCTAAATAGTCCCTCCGTT 60.244 47.826 0.00 0.00 0.00 4.44
1337 1341 2.296471 CGATGCTAAATAGTCCCTCCGT 59.704 50.000 0.00 0.00 0.00 4.69
1338 1342 2.557056 TCGATGCTAAATAGTCCCTCCG 59.443 50.000 0.00 0.00 0.00 4.63
1339 1343 4.810191 ATCGATGCTAAATAGTCCCTCC 57.190 45.455 0.00 0.00 0.00 4.30
1340 1344 7.819900 ACAAATATCGATGCTAAATAGTCCCTC 59.180 37.037 8.54 0.00 0.00 4.30
1341 1345 7.680730 ACAAATATCGATGCTAAATAGTCCCT 58.319 34.615 8.54 0.00 0.00 4.20
1342 1346 7.907214 ACAAATATCGATGCTAAATAGTCCC 57.093 36.000 8.54 0.00 0.00 4.46
1343 1347 9.209175 AGAACAAATATCGATGCTAAATAGTCC 57.791 33.333 8.54 0.00 0.00 3.85
1345 1349 9.764363 TCAGAACAAATATCGATGCTAAATAGT 57.236 29.630 8.54 0.00 0.00 2.12
1358 1362 5.841957 ACCAGCCAATCAGAACAAATATC 57.158 39.130 0.00 0.00 0.00 1.63
1386 1390 2.802816 CAGCGCCTATAAGACATTGGTC 59.197 50.000 2.29 0.00 44.66 4.02
1444 1448 1.072806 TCAACACAATGAGCAGCCTCT 59.927 47.619 0.00 0.00 38.93 3.69
1541 1545 6.072728 GCCCAATTTACAATCCCAAAGAAAAC 60.073 38.462 0.00 0.00 0.00 2.43
1544 1548 4.019771 GGCCCAATTTACAATCCCAAAGAA 60.020 41.667 0.00 0.00 0.00 2.52
1610 1614 1.608590 ACCTGAACAATGCTTGGAACG 59.391 47.619 0.00 0.00 34.12 3.95
1658 1662 1.689233 TTCCTCCCCTGGATCACCG 60.689 63.158 0.00 0.00 39.42 4.94
1673 1677 1.134670 CCTTCGTCTGGACCATCTTCC 60.135 57.143 0.00 0.00 36.03 3.46
1751 1755 1.133253 CTCAGTGCGTGCCATTTCG 59.867 57.895 0.00 0.00 0.00 3.46
1774 1778 2.611225 AAGATCAGACCGCCTTGATC 57.389 50.000 11.18 11.18 0.00 2.92
1809 1816 7.502120 AACGAATCAAGCAGCTAATCATAAT 57.498 32.000 0.00 0.00 0.00 1.28
1820 1827 9.803130 CTATGTCATATTAAACGAATCAAGCAG 57.197 33.333 0.00 0.00 0.00 4.24
1825 1832 9.271828 ACATGCTATGTCATATTAAACGAATCA 57.728 29.630 0.00 0.00 39.92 2.57
1977 1985 0.535553 TCCGCAAGCTTTTAACGGGT 60.536 50.000 20.59 0.00 43.96 5.28
2037 2045 2.487762 CCGAACTAAGCATCCAAGCAAA 59.512 45.455 0.00 0.00 36.85 3.68
2106 2114 3.696051 TCATGAAGGCAAAATAGTCCAGC 59.304 43.478 0.00 0.00 0.00 4.85
2154 2162 9.598716 AACTTAGTGAGTGGCAAGATGCAATTG 62.599 40.741 0.00 0.00 41.01 2.32
2209 2217 4.022068 ACCACAAAAGCATGGAATACTGTG 60.022 41.667 0.00 0.00 39.46 3.66
2240 2248 2.221169 CACCACAATCATCATACCCCG 58.779 52.381 0.00 0.00 0.00 5.73
2331 2340 5.547465 ACTATAGCATTTGTAGCGGCAATA 58.453 37.500 1.45 0.00 37.01 1.90
2394 2403 5.882557 TGATGAGTCTTGAAAAGGATTAGCC 59.117 40.000 0.00 0.00 46.24 3.93
2412 2421 2.094286 AGAGCTCGGTTGACTTGATGAG 60.094 50.000 8.37 0.00 0.00 2.90
2455 2464 1.694696 GAGTTCCACACCAACCTCTCT 59.305 52.381 0.00 0.00 0.00 3.10
2584 2593 4.580995 GCAGAGTAGCTATGTCAGGAACTA 59.419 45.833 0.00 0.00 36.02 2.24
2629 2638 2.040939 TGAGACCCTCGTACAAAACCA 58.959 47.619 0.00 0.00 32.35 3.67
2630 2639 2.825861 TGAGACCCTCGTACAAAACC 57.174 50.000 0.00 0.00 32.35 3.27
2685 2694 3.620488 GCCACAGGAAATCAAGGACATA 58.380 45.455 0.00 0.00 0.00 2.29
2690 2699 1.272092 TGAGGCCACAGGAAATCAAGG 60.272 52.381 5.01 0.00 0.00 3.61
2708 2717 9.710818 ACCTCTATGTAATAGTTTAGGAAGTGA 57.289 33.333 7.24 0.00 46.98 3.41
2758 2767 4.780021 AGTATCAAGTGGACAGAAGTGGAT 59.220 41.667 0.00 0.00 0.00 3.41
2803 2812 6.670077 AAACTTTATTTGGCTTGCGAAAAA 57.330 29.167 6.85 0.00 0.00 1.94
2826 2835 2.760092 GGCAACAGCATCCCATAAGAAA 59.240 45.455 0.00 0.00 0.00 2.52
2866 2875 3.481559 TCCATTTTAAGGGGGCATTCA 57.518 42.857 0.00 0.00 0.00 2.57
2893 2902 9.474920 CATACTTTGGCATTCTCAACTTTAAAA 57.525 29.630 0.00 0.00 0.00 1.52
3025 3034 0.178964 CCTGGGAAGGAGCAAAACCA 60.179 55.000 0.00 0.00 0.00 3.67
3104 3113 7.386299 CCTGACAGTAGCATAGATTTGGAATAC 59.614 40.741 0.93 0.00 0.00 1.89
3111 3120 5.189736 TCCAACCTGACAGTAGCATAGATTT 59.810 40.000 0.93 0.00 0.00 2.17
3262 3271 8.739039 AGCAAACTGTAAGCATGAAAATATGTA 58.261 29.630 0.00 0.00 37.60 2.29
3299 3308 2.028930 GGTCTGTCCTCGTTGATCTGTT 60.029 50.000 0.00 0.00 0.00 3.16
3371 3380 3.757745 ACGATTCCAGGCATAAAAACG 57.242 42.857 0.00 0.00 0.00 3.60
3428 3437 0.321346 TCGGTTCATCAGCAGCTTCA 59.679 50.000 0.00 0.00 0.00 3.02
3558 3567 3.025322 AGTCTGCCTATCTGTAGCACT 57.975 47.619 0.00 0.00 0.00 4.40
3590 3599 5.005586 CAGCAAAGAAGCGTTTGAATTTTCA 59.994 36.000 11.89 0.00 39.40 2.69
3602 3611 5.393124 TCATGTAATTTCAGCAAAGAAGCG 58.607 37.500 0.00 0.00 40.15 4.68
3754 3763 8.718656 AGGCTTTCAGTACAAAGGATAATAGAT 58.281 33.333 7.55 0.00 34.42 1.98
3782 3791 7.232118 TGTAAGTGATCTGAACATCTCAAGA 57.768 36.000 0.00 0.00 32.17 3.02
3813 3822 0.458669 CCAATGGCCAGATCACTTGC 59.541 55.000 13.05 0.00 34.59 4.01
3820 3829 5.393068 TCTTAGATTTCCAATGGCCAGAT 57.607 39.130 13.05 0.00 0.00 2.90
3911 3920 4.515361 CACCATTCTCTTGCTCTGAATCT 58.485 43.478 0.00 0.00 0.00 2.40
3964 3973 7.877612 ACTGATCCTTTTTGTTTTCAACTGTTT 59.122 29.630 0.00 0.00 39.73 2.83
4063 4072 5.389859 AGCCGAAGATATCAGAAGATCAG 57.610 43.478 5.32 0.00 35.67 2.90
4126 4135 5.049828 CAGTCACAGTAGTGTCATTGTCAA 58.950 41.667 0.00 0.00 46.01 3.18
4159 4168 1.267806 ACACATGAGCGCCTCTTTTTG 59.732 47.619 2.29 0.00 0.00 2.44
4215 4224 1.080298 GCCAACAAGGAGCATGTGC 60.080 57.895 0.00 0.00 41.22 4.57
4216 4225 0.896940 AGGCCAACAAGGAGCATGTG 60.897 55.000 5.01 0.00 41.22 3.21
4222 4442 1.747355 CATAAGCAGGCCAACAAGGAG 59.253 52.381 5.01 0.00 41.22 3.69
4224 4444 1.549203 ACATAAGCAGGCCAACAAGG 58.451 50.000 5.01 0.00 41.84 3.61
4249 4469 1.454847 GTGGCACAACTTCCACCCA 60.455 57.895 13.86 0.00 45.26 4.51
4253 4473 1.340502 TGAACTGTGGCACAACTTCCA 60.341 47.619 22.31 11.93 44.16 3.53
4272 4492 3.107601 TGGAATGGAGGGAGTAGAACTG 58.892 50.000 0.00 0.00 0.00 3.16
4354 4574 8.417176 GTGTTGTAAATCTTAGCACATTTTTCG 58.583 33.333 0.00 0.00 0.00 3.46
4449 4669 9.616156 TGTTTAAGTTTGACCAAGTCTACATAA 57.384 29.630 0.00 0.00 33.15 1.90
4482 4707 9.516546 AATTTAAGTTCTAGGTTTGTCCTAAGG 57.483 33.333 0.00 0.00 46.81 2.69
4609 4835 9.906660 CTGCACATACCTAAAACAAAGAAAATA 57.093 29.630 0.00 0.00 0.00 1.40
4610 4836 7.872483 CCTGCACATACCTAAAACAAAGAAAAT 59.128 33.333 0.00 0.00 0.00 1.82
4634 4860 3.317406 TGGTATCTGGCATGACATACCT 58.683 45.455 25.16 5.47 40.99 3.08
4720 4946 7.391148 TCTACCAAAGCAAACCATTAAGATC 57.609 36.000 0.00 0.00 0.00 2.75
4749 4975 9.237846 GTTTTTCCATTTGTGAGAGAACTTTAG 57.762 33.333 0.00 0.00 0.00 1.85
4762 4988 9.665719 AACATGAACTTTAGTTTTTCCATTTGT 57.334 25.926 0.00 0.00 38.56 2.83
4937 5163 3.525537 AGTTGTCATAAGATGGACAGCG 58.474 45.455 0.00 0.00 45.99 5.18
5030 5256 2.690497 TGCCTCGGAAGAATCTACAGAG 59.310 50.000 0.00 0.00 41.32 3.35
5126 5352 1.616994 CCAAGACCCCATTCCAGTTCC 60.617 57.143 0.00 0.00 0.00 3.62
5165 5391 4.388378 AGAAGAGCCGTAACCTAATGTC 57.612 45.455 0.00 0.00 0.00 3.06
5177 5403 1.063616 TCGTCGACATTAGAAGAGCCG 59.936 52.381 17.16 0.00 0.00 5.52
5192 5418 2.279120 GCTGGCTGATCCTCGTCG 60.279 66.667 0.00 0.00 35.26 5.12
5201 5427 0.986527 TCCTTTCATCTGCTGGCTGA 59.013 50.000 4.76 4.76 0.00 4.26
5255 5481 7.548427 AGAACATGAACTACTGATGTTGATCTG 59.452 37.037 0.00 0.00 39.77 2.90
5279 5505 5.348724 GCTCATATGTGTGAAAGACGAAAGA 59.651 40.000 1.90 0.00 29.10 2.52
5382 5608 2.739287 GCTCTGCCTGAGAATCTGAGTG 60.739 54.545 2.39 0.00 45.39 3.51
5446 5672 4.694509 GTGCAATCTGAGACTTTGAGATGT 59.305 41.667 0.23 0.00 0.00 3.06
5584 5810 6.237835 CGTGAACAGTGTATTTATAGTGCCAG 60.238 42.308 0.00 0.00 0.00 4.85
5637 5865 6.431198 AGCAAACGAGAAAACAAGAAACTA 57.569 33.333 0.00 0.00 0.00 2.24
5640 5868 8.591312 CAATAAAGCAAACGAGAAAACAAGAAA 58.409 29.630 0.00 0.00 0.00 2.52
5658 5886 6.539649 TCACTCTGTAACACACAATAAAGC 57.460 37.500 0.00 0.00 36.48 3.51
5663 5891 4.071961 TGCTCACTCTGTAACACACAAT 57.928 40.909 0.00 0.00 36.48 2.71
5702 5930 1.940613 CCCTTTTAATCTTCGCGAGGG 59.059 52.381 18.80 13.82 36.69 4.30
5757 5985 9.434275 TGAATTAGGTACTTCTCATAATCCTCA 57.566 33.333 0.00 0.00 41.75 3.86
5781 6009 3.565482 CCTTTGTGAGCTTGCTTAACTGA 59.435 43.478 0.00 0.00 0.00 3.41
5812 6040 1.434622 CTACGCTTGGCATGCCTCAG 61.435 60.000 35.53 29.46 36.94 3.35
5913 6141 0.459237 GGTCACTCTCAGGTGATGCG 60.459 60.000 0.70 0.00 46.04 4.73
5947 6175 3.403038 CACGAACATCTGGACCTTCTTT 58.597 45.455 0.00 0.00 0.00 2.52
5966 6194 1.068055 CCTGCAGGTTTTCATCAGCAC 60.068 52.381 25.53 0.00 0.00 4.40
5967 6195 1.250328 CCTGCAGGTTTTCATCAGCA 58.750 50.000 25.53 0.00 0.00 4.41
5988 6216 2.351060 GGTGTCATCATGTTGTGCACTG 60.351 50.000 19.41 7.99 0.00 3.66
6007 6235 2.418746 CGGATTCAGAATCTTGGACGGT 60.419 50.000 20.41 0.00 38.01 4.83
6030 6261 6.093617 ACTAATACTTCCTCCTCTTCTCCA 57.906 41.667 0.00 0.00 0.00 3.86
6059 6290 1.888512 GGTTTGCATTGGCTCTCTTCA 59.111 47.619 0.00 0.00 41.91 3.02
6069 6300 4.815308 TCTTGGACAATTTGGTTTGCATTG 59.185 37.500 0.78 0.00 34.60 2.82
6130 6361 1.620323 TGTCTTAGCTCTCTTGCTGCA 59.380 47.619 0.00 0.00 43.87 4.41
6135 6366 4.887748 TCTGGTTTGTCTTAGCTCTCTTG 58.112 43.478 0.00 0.00 0.00 3.02
6282 6513 2.489329 GCTTTCTGATTGCTGCCTACAA 59.511 45.455 0.00 0.00 0.00 2.41
6337 6568 8.761497 CAGAAACTGTTCAAAACTATCTACGAA 58.239 33.333 0.00 0.00 36.09 3.85
6398 6629 4.577693 AGAGCACAATGATTGCGATTACAT 59.422 37.500 4.84 0.00 45.15 2.29
6444 6675 7.434013 AGAAATGTGGTTCGTGTTAAAATTCAC 59.566 33.333 0.00 0.00 32.50 3.18
6502 6895 5.578005 ATTCAGTCATCAAAGATTGCCAG 57.422 39.130 0.00 0.00 0.00 4.85
6527 6920 4.737578 AGTACAGTAAGACAGGAAGGACA 58.262 43.478 0.00 0.00 0.00 4.02
6560 6953 4.096681 TCAATACAGGAGGCTCTTCTTGA 58.903 43.478 15.23 12.05 0.00 3.02
6571 6964 5.236478 ACGTCAAGTTGTTTCAATACAGGAG 59.764 40.000 2.11 0.00 0.00 3.69
6586 6979 5.121768 GTCAACAGCCAATATACGTCAAGTT 59.878 40.000 0.00 0.00 0.00 2.66
6593 6986 1.864711 CCCGTCAACAGCCAATATACG 59.135 52.381 0.00 0.00 0.00 3.06
6594 6987 2.218603 CCCCGTCAACAGCCAATATAC 58.781 52.381 0.00 0.00 0.00 1.47
6607 7000 0.463654 GACAATATGCTGCCCCGTCA 60.464 55.000 0.00 0.00 0.00 4.35
6627 7520 2.687700 AGACATGGATCACTGCACTC 57.312 50.000 0.00 0.00 0.00 3.51
7016 7921 1.395826 ATACCCTGCCACGAGAGAGC 61.396 60.000 0.00 0.00 35.13 4.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.