Multiple sequence alignment - TraesCS4A01G139700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G139700 chr4A 100.000 6866 0 0 1 6866 211377180 211384045 0.000000e+00 12680
1 TraesCS4A01G139700 chr4A 91.282 195 11 5 940 1130 667005881 667005689 1.900000e-65 261
2 TraesCS4A01G139700 chr4D 91.209 2241 135 34 3300 5490 291950732 291952960 0.000000e+00 2990
3 TraesCS4A01G139700 chr4D 92.647 816 32 13 813 1618 291932153 291932950 0.000000e+00 1149
4 TraesCS4A01G139700 chr4D 90.717 851 45 16 5486 6309 291952985 291953828 0.000000e+00 1103
5 TraesCS4A01G139700 chr4D 90.355 788 52 12 2265 3044 291949965 291950736 0.000000e+00 1013
6 TraesCS4A01G139700 chr4D 87.143 770 61 14 1 759 291769743 291770485 0.000000e+00 839
7 TraesCS4A01G139700 chr4D 95.900 439 18 0 1829 2267 291933013 291933451 0.000000e+00 712
8 TraesCS4A01G139700 chr4D 92.803 264 18 1 3039 3302 114578955 114579217 1.400000e-101 381
9 TraesCS4A01G139700 chr4D 90.625 192 14 4 1641 1831 443366623 443366811 1.140000e-62 252
10 TraesCS4A01G139700 chr4B 93.452 1512 55 16 4748 6231 273982629 273984124 0.000000e+00 2204
11 TraesCS4A01G139700 chr4B 96.719 1219 30 6 1830 3044 273977238 273978450 0.000000e+00 2021
12 TraesCS4A01G139700 chr4B 97.069 887 17 5 3874 4751 273980662 273981548 0.000000e+00 1485
13 TraesCS4A01G139700 chr4B 91.947 981 31 14 722 1670 273976275 273977239 0.000000e+00 1330
14 TraesCS4A01G139700 chr4B 96.454 564 18 1 3300 3863 273978446 273979007 0.000000e+00 929
15 TraesCS4A01G139700 chr4B 83.629 507 48 6 291 794 273975844 273976318 1.760000e-120 444
16 TraesCS4A01G139700 chr4B 93.243 74 5 0 4756 4829 249050239 249050312 7.280000e-20 110
17 TraesCS4A01G139700 chr1B 97.944 535 8 2 6335 6866 200301295 200301829 0.000000e+00 924
18 TraesCS4A01G139700 chr1B 97.383 535 11 2 6335 6866 200302934 200303468 0.000000e+00 907
19 TraesCS4A01G139700 chr1B 92.803 264 15 4 3039 3302 518264024 518263765 5.030000e-101 379
20 TraesCS4A01G139700 chr1B 92.481 266 16 4 3044 3308 430158113 430157851 1.810000e-100 377
21 TraesCS4A01G139700 chr1B 92.453 265 18 2 3039 3302 562893902 562894165 1.810000e-100 377
22 TraesCS4A01G139700 chr7B 97.383 535 11 2 6335 6866 116509269 116508735 0.000000e+00 907
23 TraesCS4A01G139700 chr7B 97.196 535 12 2 6335 6866 116507631 116507097 0.000000e+00 902
24 TraesCS4A01G139700 chr3A 94.424 538 22 6 6334 6866 201477541 201477007 0.000000e+00 821
25 TraesCS4A01G139700 chr3A 93.084 535 31 5 6335 6866 711547776 711547245 0.000000e+00 778
26 TraesCS4A01G139700 chr3A 92.308 195 9 5 940 1130 625331347 625331155 8.770000e-69 272
27 TraesCS4A01G139700 chr7D 92.924 537 28 8 6335 6866 5703860 5703329 0.000000e+00 773
28 TraesCS4A01G139700 chr7D 92.857 532 28 8 6340 6866 5705668 5705142 0.000000e+00 763
29 TraesCS4A01G139700 chr1D 91.128 541 37 7 6334 6866 199014000 199014537 0.000000e+00 723
30 TraesCS4A01G139700 chr1D 91.791 268 21 1 3039 3306 276797595 276797329 8.410000e-99 372
31 TraesCS4A01G139700 chr1D 92.045 264 20 1 3039 3302 225401898 225402160 3.020000e-98 370
32 TraesCS4A01G139700 chr1D 91.985 262 20 1 3041 3302 100462103 100461843 3.910000e-97 366
33 TraesCS4A01G139700 chr1D 89.680 281 25 4 3041 3320 285439753 285439476 8.470000e-94 355
34 TraesCS4A01G139700 chr1D 94.186 172 10 0 1669 1840 160451657 160451486 5.280000e-66 263
35 TraesCS4A01G139700 chr1D 92.778 180 12 1 1652 1831 450202037 450202215 6.830000e-65 259
36 TraesCS4A01G139700 chr1D 92.265 181 12 2 1655 1835 485505420 485505242 8.840000e-64 255
37 TraesCS4A01G139700 chr1D 90.588 85 5 3 940 1022 415679927 415680010 7.280000e-20 110
38 TraesCS4A01G139700 chr7A 91.418 268 22 1 3041 3308 694496883 694496617 3.910000e-97 366
39 TraesCS4A01G139700 chr5A 98.773 163 2 0 1669 1831 386181223 386181061 2.420000e-74 291
40 TraesCS4A01G139700 chr5A 93.421 76 5 0 4759 4834 174267623 174267548 5.630000e-21 113
41 TraesCS4A01G139700 chr3D 95.266 169 7 1 1665 1832 486424954 486424786 4.080000e-67 267
42 TraesCS4A01G139700 chr3D 95.775 71 3 0 4764 4834 175406783 175406853 1.560000e-21 115
43 TraesCS4A01G139700 chr3D 93.506 77 5 0 4758 4834 422517988 422517912 1.560000e-21 115
44 TraesCS4A01G139700 chr2B 91.327 196 11 4 940 1130 699180788 699180594 5.280000e-66 263
45 TraesCS4A01G139700 chr2B 91.765 85 4 3 940 1022 608205564 608205647 1.560000e-21 115
46 TraesCS4A01G139700 chr2B 91.139 79 5 2 945 1022 91167965 91167888 9.420000e-19 106
47 TraesCS4A01G139700 chr6D 93.714 175 10 1 1657 1831 359354768 359354941 1.900000e-65 261
48 TraesCS4A01G139700 chr2D 93.642 173 9 2 1661 1832 8974522 8974693 2.460000e-64 257
49 TraesCS4A01G139700 chr2A 91.099 191 14 3 1641 1831 149111407 149111594 8.840000e-64 255
50 TraesCS4A01G139700 chr3B 93.506 77 5 0 4758 4834 550641749 550641673 1.560000e-21 115
51 TraesCS4A01G139700 chr5D 90.588 85 5 3 940 1022 100124465 100124548 7.280000e-20 110
52 TraesCS4A01G139700 chr5D 92.105 76 6 0 4759 4834 142352479 142352554 2.620000e-19 108
53 TraesCS4A01G139700 chr6A 91.139 79 7 0 4756 4834 178890600 178890678 2.620000e-19 108


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G139700 chr4A 211377180 211384045 6865 False 12680.000000 12680 100.000000 1 6866 1 chr4A.!!$F1 6865
1 TraesCS4A01G139700 chr4D 291949965 291953828 3863 False 1702.000000 2990 90.760333 2265 6309 3 chr4D.!!$F5 4044
2 TraesCS4A01G139700 chr4D 291932153 291933451 1298 False 930.500000 1149 94.273500 813 2267 2 chr4D.!!$F4 1454
3 TraesCS4A01G139700 chr4D 291769743 291770485 742 False 839.000000 839 87.143000 1 759 1 chr4D.!!$F2 758
4 TraesCS4A01G139700 chr4B 273975844 273984124 8280 False 1402.166667 2204 93.211667 291 6231 6 chr4B.!!$F2 5940
5 TraesCS4A01G139700 chr1B 200301295 200303468 2173 False 915.500000 924 97.663500 6335 6866 2 chr1B.!!$F2 531
6 TraesCS4A01G139700 chr7B 116507097 116509269 2172 True 904.500000 907 97.289500 6335 6866 2 chr7B.!!$R1 531
7 TraesCS4A01G139700 chr3A 201477007 201477541 534 True 821.000000 821 94.424000 6334 6866 1 chr3A.!!$R1 532
8 TraesCS4A01G139700 chr3A 711547245 711547776 531 True 778.000000 778 93.084000 6335 6866 1 chr3A.!!$R3 531
9 TraesCS4A01G139700 chr7D 5703329 5705668 2339 True 768.000000 773 92.890500 6335 6866 2 chr7D.!!$R1 531
10 TraesCS4A01G139700 chr1D 199014000 199014537 537 False 723.000000 723 91.128000 6334 6866 1 chr1D.!!$F1 532

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
188 190 0.443869 GGTACAGATTGCAGCACACG 59.556 55.000 0.00 0.0 0.00 4.49 F
923 998 1.039856 GGCTTCAGCTCCAACCAAAA 58.960 50.000 0.00 0.0 41.70 2.44 F
1370 1469 1.512734 GTGCTTGTATGTGCAGCGC 60.513 57.895 0.00 0.0 40.06 5.92 F
3069 3203 0.391528 GGCCCTTTTTACTCCGCGTA 60.392 55.000 4.92 0.0 0.00 4.42 F
3083 3217 1.656594 CCGCGTATTCGATTTGTGTCA 59.343 47.619 4.92 0.0 39.71 3.58 F
3294 3428 1.695242 TGCAGACTAAAAAGGACCGGA 59.305 47.619 9.46 0.0 0.00 5.14 F
4834 7721 2.100749 CCACCACTTTGGGTCTTTTGTC 59.899 50.000 0.00 0.0 43.37 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1395 1494 0.530744 TGGTGAGACCAGCATCGTAC 59.469 55.000 0.00 0.00 44.79 3.67 R
1815 1938 1.006758 TCACATACTCCCTCCGTTCCT 59.993 52.381 0.00 0.00 0.00 3.36 R
3287 3421 0.324091 TCAAGTACTCCCTCCGGTCC 60.324 60.000 0.00 0.00 0.00 4.46 R
3937 5717 7.333528 TCATTAACAAACTGGCCATTCTATC 57.666 36.000 5.51 0.00 0.00 2.08 R
3982 5762 7.989416 TCTTTAACATGTTCCGGATAGTTTT 57.011 32.000 15.85 0.00 0.00 2.43 R
5103 8029 1.139989 CTGTTGTGCACGACCTACAG 58.860 55.000 30.04 22.16 32.85 2.74 R
6318 9306 0.394352 ATCAATGTTCGTGCTCCCCC 60.394 55.000 0.00 0.00 0.00 5.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 3.871006 ACATATGTACAATGCACTGACCG 59.129 43.478 6.56 0.00 0.00 4.79
56 57 7.294584 ACCATCTCTAGATCTAGCAGTAAAGT 58.705 38.462 22.81 11.79 33.32 2.66
81 83 8.760569 GTTACACCTACAAAATTTTCATTGTGG 58.239 33.333 17.52 9.70 39.89 4.17
112 114 6.183360 GGATTCATTTAAAATCAGGAGGGGTG 60.183 42.308 0.00 0.00 35.30 4.61
150 152 4.905429 AGAGTACACATTACACCATGCAA 58.095 39.130 0.00 0.00 0.00 4.08
152 154 3.440173 AGTACACATTACACCATGCAAGC 59.560 43.478 0.00 0.00 0.00 4.01
159 161 1.042229 ACACCATGCAAGCACATGTT 58.958 45.000 0.00 0.00 44.88 2.71
160 162 1.269883 ACACCATGCAAGCACATGTTG 60.270 47.619 0.00 10.59 44.88 3.33
165 167 0.958091 TGCAAGCACATGTTGTACCC 59.042 50.000 0.00 0.00 0.00 3.69
188 190 0.443869 GGTACAGATTGCAGCACACG 59.556 55.000 0.00 0.00 0.00 4.49
202 204 1.933853 GCACACGGGAGTACATGATTC 59.066 52.381 0.00 0.00 44.67 2.52
205 207 4.191544 CACACGGGAGTACATGATTCATT 58.808 43.478 0.00 0.00 44.67 2.57
209 211 3.181455 CGGGAGTACATGATTCATTGGGA 60.181 47.826 0.00 0.00 0.00 4.37
280 282 7.878477 AAGTACATGTTCATTTTGCATGAAG 57.122 32.000 2.30 0.00 41.62 3.02
289 291 9.409312 TGTTCATTTTGCATGAAGTATAAGTTG 57.591 29.630 0.00 0.00 38.54 3.16
292 294 5.973899 TTTGCATGAAGTATAAGTTGCCA 57.026 34.783 0.00 0.00 0.00 4.92
337 339 7.174946 CCCATAAGAATGTACAAGTCTGTTGTT 59.825 37.037 11.94 3.42 36.96 2.83
348 350 6.454795 ACAAGTCTGTTGTTGTGTGAATTTT 58.545 32.000 0.00 0.00 35.55 1.82
351 353 8.533965 CAAGTCTGTTGTTGTGTGAATTTTATG 58.466 33.333 0.00 0.00 0.00 1.90
462 471 2.507407 TTGGTTTGGAGATACTGGCC 57.493 50.000 0.00 0.00 0.00 5.36
467 476 1.891933 TTGGAGATACTGGCCCATGA 58.108 50.000 0.00 0.00 0.00 3.07
559 587 9.801873 ATATCGAAGAAGAAGAAGAAGAAGAAG 57.198 33.333 0.00 0.00 43.58 2.85
560 588 7.278461 TCGAAGAAGAAGAAGAAGAAGAAGA 57.722 36.000 0.00 0.00 0.00 2.87
561 589 7.717568 TCGAAGAAGAAGAAGAAGAAGAAGAA 58.282 34.615 0.00 0.00 0.00 2.52
562 590 7.865385 TCGAAGAAGAAGAAGAAGAAGAAGAAG 59.135 37.037 0.00 0.00 0.00 2.85
563 591 7.865385 CGAAGAAGAAGAAGAAGAAGAAGAAGA 59.135 37.037 0.00 0.00 0.00 2.87
564 592 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
565 593 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
566 594 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
567 595 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
568 596 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
569 597 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
570 598 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
571 599 8.887036 AGAAGAAGAAGAAGAAGAAGAAGAAC 57.113 34.615 0.00 0.00 0.00 3.01
572 600 8.482128 AGAAGAAGAAGAAGAAGAAGAAGAACA 58.518 33.333 0.00 0.00 0.00 3.18
573 601 9.103861 GAAGAAGAAGAAGAAGAAGAAGAACAA 57.896 33.333 0.00 0.00 0.00 2.83
574 602 8.661352 AGAAGAAGAAGAAGAAGAAGAACAAG 57.339 34.615 0.00 0.00 0.00 3.16
575 603 8.482128 AGAAGAAGAAGAAGAAGAAGAACAAGA 58.518 33.333 0.00 0.00 0.00 3.02
576 604 9.103861 GAAGAAGAAGAAGAAGAAGAACAAGAA 57.896 33.333 0.00 0.00 0.00 2.52
577 605 8.661352 AGAAGAAGAAGAAGAAGAACAAGAAG 57.339 34.615 0.00 0.00 0.00 2.85
578 606 8.482128 AGAAGAAGAAGAAGAAGAACAAGAAGA 58.518 33.333 0.00 0.00 0.00 2.87
579 607 9.103861 GAAGAAGAAGAAGAAGAACAAGAAGAA 57.896 33.333 0.00 0.00 0.00 2.52
580 608 8.661352 AGAAGAAGAAGAAGAACAAGAAGAAG 57.339 34.615 0.00 0.00 0.00 2.85
627 666 2.559705 CCCCTTTAACCCAAGGCAGAAT 60.560 50.000 0.00 0.00 42.04 2.40
638 677 3.515104 CCAAGGCAGAATACCACCAAAAT 59.485 43.478 0.00 0.00 0.00 1.82
659 698 7.765695 AAATTCCATGATTGTGACAAGTAGT 57.234 32.000 3.74 0.00 0.00 2.73
666 705 7.148188 CCATGATTGTGACAAGTAGTGCTAATT 60.148 37.037 3.74 0.00 0.00 1.40
675 714 5.067153 ACAAGTAGTGCTAATTTGTTGTGCA 59.933 36.000 0.00 0.00 0.00 4.57
923 998 1.039856 GGCTTCAGCTCCAACCAAAA 58.960 50.000 0.00 0.00 41.70 2.44
926 1001 3.367395 GGCTTCAGCTCCAACCAAAATAC 60.367 47.826 0.00 0.00 41.70 1.89
928 1003 3.517296 TCAGCTCCAACCAAAATACCA 57.483 42.857 0.00 0.00 0.00 3.25
1370 1469 1.512734 GTGCTTGTATGTGCAGCGC 60.513 57.895 0.00 0.00 40.06 5.92
1393 1492 1.704641 TGGAGCTGCGGTAGTATGAT 58.295 50.000 0.00 0.00 0.00 2.45
1394 1493 2.871453 TGGAGCTGCGGTAGTATGATA 58.129 47.619 0.00 0.00 0.00 2.15
1395 1494 2.820197 TGGAGCTGCGGTAGTATGATAG 59.180 50.000 0.00 0.00 0.00 2.08
1423 1523 2.932622 GCTGGTCTCACCACACACATAG 60.933 54.545 0.00 0.00 44.79 2.23
1539 1643 5.530915 TCCATTTTGTTAGTGGTTGTCAGAG 59.469 40.000 0.00 0.00 34.61 3.35
1556 1660 4.742167 GTCAGAGTTATGTGATCCATGTCG 59.258 45.833 6.87 0.00 34.86 4.35
1634 1753 5.388654 AGGTTGCTATCCCCATTGAAATAG 58.611 41.667 0.00 0.00 0.00 1.73
1635 1754 4.524328 GGTTGCTATCCCCATTGAAATAGG 59.476 45.833 0.00 0.00 0.00 2.57
1636 1755 5.385198 GTTGCTATCCCCATTGAAATAGGA 58.615 41.667 0.00 0.00 0.00 2.94
1637 1756 5.246981 TGCTATCCCCATTGAAATAGGAG 57.753 43.478 0.00 0.00 0.00 3.69
1638 1757 4.665009 TGCTATCCCCATTGAAATAGGAGT 59.335 41.667 0.00 0.00 0.00 3.85
1639 1758 5.849475 TGCTATCCCCATTGAAATAGGAGTA 59.151 40.000 0.00 0.00 0.00 2.59
1675 1798 8.728596 AGCAAAACATATATCTACTACTCCCT 57.271 34.615 0.00 0.00 0.00 4.20
1676 1799 8.808092 AGCAAAACATATATCTACTACTCCCTC 58.192 37.037 0.00 0.00 0.00 4.30
1677 1800 8.035984 GCAAAACATATATCTACTACTCCCTCC 58.964 40.741 0.00 0.00 0.00 4.30
1678 1801 7.941431 AAACATATATCTACTACTCCCTCCG 57.059 40.000 0.00 0.00 0.00 4.63
1679 1802 6.639590 ACATATATCTACTACTCCCTCCGT 57.360 41.667 0.00 0.00 0.00 4.69
1680 1803 7.030234 ACATATATCTACTACTCCCTCCGTT 57.970 40.000 0.00 0.00 0.00 4.44
1681 1804 7.111466 ACATATATCTACTACTCCCTCCGTTC 58.889 42.308 0.00 0.00 0.00 3.95
1682 1805 2.725221 TCTACTACTCCCTCCGTTCC 57.275 55.000 0.00 0.00 0.00 3.62
1683 1806 2.203584 TCTACTACTCCCTCCGTTCCT 58.796 52.381 0.00 0.00 0.00 3.36
1684 1807 3.387962 TCTACTACTCCCTCCGTTCCTA 58.612 50.000 0.00 0.00 0.00 2.94
1685 1808 3.782523 TCTACTACTCCCTCCGTTCCTAA 59.217 47.826 0.00 0.00 0.00 2.69
1686 1809 3.463048 ACTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
1687 1810 3.991683 ACTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
1688 1811 5.134725 ACTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
1689 1812 5.713807 ACTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
1690 1813 6.856757 ACTACTCCCTCCGTTCCTAAATATA 58.143 40.000 0.00 0.00 0.00 0.86
1691 1814 7.300658 ACTACTCCCTCCGTTCCTAAATATAA 58.699 38.462 0.00 0.00 0.00 0.98
1692 1815 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
1693 1816 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
1694 1817 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
1695 1818 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
1696 1819 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
1697 1820 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
1698 1821 7.441458 CCCTCCGTTCCTAAATATAAGTCTTTG 59.559 40.741 0.00 0.00 0.00 2.77
1699 1822 7.985752 CCTCCGTTCCTAAATATAAGTCTTTGT 59.014 37.037 0.00 0.00 0.00 2.83
1771 1894 7.093322 AGTGTAGATTCATTCATTTTGCTCC 57.907 36.000 0.00 0.00 0.00 4.70
1772 1895 5.967674 GTGTAGATTCATTCATTTTGCTCCG 59.032 40.000 0.00 0.00 0.00 4.63
1773 1896 5.647658 TGTAGATTCATTCATTTTGCTCCGT 59.352 36.000 0.00 0.00 0.00 4.69
1774 1897 6.821160 TGTAGATTCATTCATTTTGCTCCGTA 59.179 34.615 0.00 0.00 0.00 4.02
1775 1898 6.949352 AGATTCATTCATTTTGCTCCGTAT 57.051 33.333 0.00 0.00 0.00 3.06
1776 1899 6.732154 AGATTCATTCATTTTGCTCCGTATG 58.268 36.000 0.00 0.00 0.00 2.39
1777 1900 5.895636 TTCATTCATTTTGCTCCGTATGT 57.104 34.783 0.00 0.00 0.00 2.29
1778 1901 6.993786 TTCATTCATTTTGCTCCGTATGTA 57.006 33.333 0.00 0.00 0.00 2.29
1779 1902 6.603237 TCATTCATTTTGCTCCGTATGTAG 57.397 37.500 0.00 0.00 0.00 2.74
1780 1903 6.112734 TCATTCATTTTGCTCCGTATGTAGT 58.887 36.000 0.00 0.00 0.00 2.73
1781 1904 6.257849 TCATTCATTTTGCTCCGTATGTAGTC 59.742 38.462 0.00 0.00 0.00 2.59
1782 1905 4.439057 TCATTTTGCTCCGTATGTAGTCC 58.561 43.478 0.00 0.00 0.00 3.85
1783 1906 3.965379 TTTTGCTCCGTATGTAGTCCA 57.035 42.857 0.00 0.00 0.00 4.02
1784 1907 4.481368 TTTTGCTCCGTATGTAGTCCAT 57.519 40.909 0.00 0.00 37.58 3.41
1785 1908 3.728076 TTGCTCCGTATGTAGTCCATC 57.272 47.619 0.00 0.00 34.86 3.51
1786 1909 2.945456 TGCTCCGTATGTAGTCCATCT 58.055 47.619 0.00 0.00 34.86 2.90
1787 1910 4.094830 TGCTCCGTATGTAGTCCATCTA 57.905 45.455 0.00 0.00 34.86 1.98
1788 1911 4.072839 TGCTCCGTATGTAGTCCATCTAG 58.927 47.826 0.00 0.00 34.86 2.43
1789 1912 4.073549 GCTCCGTATGTAGTCCATCTAGT 58.926 47.826 0.00 0.00 34.86 2.57
1790 1913 4.519730 GCTCCGTATGTAGTCCATCTAGTT 59.480 45.833 0.00 0.00 34.86 2.24
1791 1914 5.563085 GCTCCGTATGTAGTCCATCTAGTTG 60.563 48.000 0.00 0.00 34.86 3.16
1792 1915 5.687780 TCCGTATGTAGTCCATCTAGTTGA 58.312 41.667 2.20 0.00 34.86 3.18
1793 1916 6.124340 TCCGTATGTAGTCCATCTAGTTGAA 58.876 40.000 2.20 0.00 34.86 2.69
1794 1917 6.776116 TCCGTATGTAGTCCATCTAGTTGAAT 59.224 38.462 2.20 0.00 34.86 2.57
1795 1918 7.040617 TCCGTATGTAGTCCATCTAGTTGAATC 60.041 40.741 2.20 0.00 34.86 2.52
1796 1919 7.040340 CCGTATGTAGTCCATCTAGTTGAATCT 60.040 40.741 2.20 1.30 34.86 2.40
1797 1920 8.018520 CGTATGTAGTCCATCTAGTTGAATCTC 58.981 40.741 2.20 0.00 34.86 2.75
1798 1921 9.073475 GTATGTAGTCCATCTAGTTGAATCTCT 57.927 37.037 2.20 0.00 34.86 3.10
1800 1923 8.453238 TGTAGTCCATCTAGTTGAATCTCTAC 57.547 38.462 2.20 7.65 0.00 2.59
1801 1924 8.053355 TGTAGTCCATCTAGTTGAATCTCTACA 58.947 37.037 2.20 9.53 32.96 2.74
1802 1925 7.962995 AGTCCATCTAGTTGAATCTCTACAA 57.037 36.000 2.20 0.00 0.00 2.41
1803 1926 8.367660 AGTCCATCTAGTTGAATCTCTACAAA 57.632 34.615 2.20 0.00 0.00 2.83
1804 1927 8.474025 AGTCCATCTAGTTGAATCTCTACAAAG 58.526 37.037 2.20 0.00 0.00 2.77
1805 1928 8.470805 GTCCATCTAGTTGAATCTCTACAAAGA 58.529 37.037 2.20 0.00 0.00 2.52
1806 1929 8.470805 TCCATCTAGTTGAATCTCTACAAAGAC 58.529 37.037 2.20 0.00 0.00 3.01
1807 1930 8.474025 CCATCTAGTTGAATCTCTACAAAGACT 58.526 37.037 2.20 0.00 0.00 3.24
1808 1931 9.868277 CATCTAGTTGAATCTCTACAAAGACTT 57.132 33.333 0.00 0.00 0.00 3.01
1824 1947 8.943909 ACAAAGACTTATATTTAGGAACGGAG 57.056 34.615 0.00 0.00 0.00 4.63
1825 1948 7.985752 ACAAAGACTTATATTTAGGAACGGAGG 59.014 37.037 0.00 0.00 0.00 4.30
1826 1949 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
1827 1950 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
1828 1951 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
1829 1952 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
1830 1953 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
1983 2109 3.058639 GCGGACCTTGATCTTTGATATGC 60.059 47.826 0.00 0.00 0.00 3.14
2158 2284 2.364632 CCGGTATGAATCTGCACCAAA 58.635 47.619 0.00 0.00 0.00 3.28
2311 2437 1.933247 GCTATCAGACAGACAGCCAC 58.067 55.000 0.00 0.00 40.98 5.01
2318 2448 1.486310 AGACAGACAGCCACTGAAACA 59.514 47.619 0.78 0.00 38.55 2.83
2359 2491 2.338500 GAACTGACCTTTACCAGCTCG 58.662 52.381 0.00 0.00 33.90 5.03
2525 2658 5.876357 AGCCTGTTGTCTTAATTCTTACCA 58.124 37.500 0.00 0.00 0.00 3.25
2841 2975 3.833732 CCAGTATCCAGTAGTGGCTCTA 58.166 50.000 12.14 0.92 44.72 2.43
2962 3096 4.932200 GTCTCACTTCCCTTGTATGTTGAG 59.068 45.833 0.00 0.00 0.00 3.02
3043 3177 3.065786 TCGACGTCTGTTTTCAGTGTACT 59.934 43.478 14.70 0.00 46.98 2.73
3044 3178 3.421231 CGACGTCTGTTTTCAGTGTACTC 59.579 47.826 14.70 0.00 46.98 2.59
3045 3179 3.714391 ACGTCTGTTTTCAGTGTACTCC 58.286 45.455 0.00 0.00 46.98 3.85
3046 3180 3.057734 CGTCTGTTTTCAGTGTACTCCC 58.942 50.000 0.00 0.00 46.98 4.30
3047 3181 3.243771 CGTCTGTTTTCAGTGTACTCCCT 60.244 47.826 0.00 0.00 46.98 4.20
3048 3182 4.308265 GTCTGTTTTCAGTGTACTCCCTC 58.692 47.826 0.00 0.00 46.98 4.30
3049 3183 3.323979 TCTGTTTTCAGTGTACTCCCTCC 59.676 47.826 0.00 0.00 46.98 4.30
3050 3184 2.036733 TGTTTTCAGTGTACTCCCTCCG 59.963 50.000 0.00 0.00 0.00 4.63
3051 3185 1.263356 TTTCAGTGTACTCCCTCCGG 58.737 55.000 0.00 0.00 0.00 5.14
3052 3186 1.255667 TTCAGTGTACTCCCTCCGGC 61.256 60.000 0.00 0.00 0.00 6.13
3053 3187 2.363925 AGTGTACTCCCTCCGGCC 60.364 66.667 0.00 0.00 0.00 6.13
3054 3188 3.468140 GTGTACTCCCTCCGGCCC 61.468 72.222 0.00 0.00 0.00 5.80
3055 3189 3.680196 TGTACTCCCTCCGGCCCT 61.680 66.667 0.00 0.00 0.00 5.19
3056 3190 2.365237 GTACTCCCTCCGGCCCTT 60.365 66.667 0.00 0.00 0.00 3.95
3057 3191 1.993948 GTACTCCCTCCGGCCCTTT 60.994 63.158 0.00 0.00 0.00 3.11
3058 3192 1.229723 TACTCCCTCCGGCCCTTTT 60.230 57.895 0.00 0.00 0.00 2.27
3059 3193 0.843343 TACTCCCTCCGGCCCTTTTT 60.843 55.000 0.00 0.00 0.00 1.94
3060 3194 0.843343 ACTCCCTCCGGCCCTTTTTA 60.843 55.000 0.00 0.00 0.00 1.52
3061 3195 0.393944 CTCCCTCCGGCCCTTTTTAC 60.394 60.000 0.00 0.00 0.00 2.01
3062 3196 0.843343 TCCCTCCGGCCCTTTTTACT 60.843 55.000 0.00 0.00 0.00 2.24
3063 3197 0.393944 CCCTCCGGCCCTTTTTACTC 60.394 60.000 0.00 0.00 0.00 2.59
3064 3198 0.393944 CCTCCGGCCCTTTTTACTCC 60.394 60.000 0.00 0.00 0.00 3.85
3065 3199 0.743345 CTCCGGCCCTTTTTACTCCG 60.743 60.000 0.00 0.00 39.79 4.63
3066 3200 2.404186 CCGGCCCTTTTTACTCCGC 61.404 63.158 0.00 0.00 38.85 5.54
3067 3201 2.746803 CGGCCCTTTTTACTCCGCG 61.747 63.158 0.00 0.00 33.36 6.46
3068 3202 1.673337 GGCCCTTTTTACTCCGCGT 60.673 57.895 4.92 0.00 0.00 6.01
3069 3203 0.391528 GGCCCTTTTTACTCCGCGTA 60.392 55.000 4.92 0.00 0.00 4.42
3070 3204 1.660167 GCCCTTTTTACTCCGCGTAT 58.340 50.000 4.92 0.00 0.00 3.06
3071 3205 2.011947 GCCCTTTTTACTCCGCGTATT 58.988 47.619 4.92 0.00 0.00 1.89
3072 3206 2.031314 GCCCTTTTTACTCCGCGTATTC 59.969 50.000 4.92 0.00 0.00 1.75
3073 3207 2.283351 CCCTTTTTACTCCGCGTATTCG 59.717 50.000 4.92 0.00 40.37 3.34
3074 3208 3.181397 CCTTTTTACTCCGCGTATTCGA 58.819 45.455 4.92 0.00 39.71 3.71
3075 3209 3.800506 CCTTTTTACTCCGCGTATTCGAT 59.199 43.478 4.92 0.00 39.71 3.59
3076 3210 4.269363 CCTTTTTACTCCGCGTATTCGATT 59.731 41.667 4.92 0.00 39.71 3.34
3077 3211 5.220529 CCTTTTTACTCCGCGTATTCGATTT 60.221 40.000 4.92 0.00 39.71 2.17
3078 3212 4.765281 TTTACTCCGCGTATTCGATTTG 57.235 40.909 4.92 0.00 39.71 2.32
3079 3213 2.288961 ACTCCGCGTATTCGATTTGT 57.711 45.000 4.92 0.00 39.71 2.83
3080 3214 1.924524 ACTCCGCGTATTCGATTTGTG 59.075 47.619 4.92 0.00 39.71 3.33
3081 3215 1.924524 CTCCGCGTATTCGATTTGTGT 59.075 47.619 4.92 0.00 39.71 3.72
3082 3216 1.921887 TCCGCGTATTCGATTTGTGTC 59.078 47.619 4.92 0.00 39.71 3.67
3083 3217 1.656594 CCGCGTATTCGATTTGTGTCA 59.343 47.619 4.92 0.00 39.71 3.58
3084 3218 2.092995 CCGCGTATTCGATTTGTGTCAA 59.907 45.455 4.92 0.00 39.71 3.18
3085 3219 3.333723 CGCGTATTCGATTTGTGTCAAG 58.666 45.455 0.00 0.00 39.71 3.02
3086 3220 3.181534 CGCGTATTCGATTTGTGTCAAGT 60.182 43.478 0.00 0.00 39.71 3.16
3087 3221 4.323751 GCGTATTCGATTTGTGTCAAGTC 58.676 43.478 0.00 0.00 39.71 3.01
3088 3222 4.143200 GCGTATTCGATTTGTGTCAAGTCA 60.143 41.667 0.00 0.00 39.71 3.41
3089 3223 5.613795 GCGTATTCGATTTGTGTCAAGTCAA 60.614 40.000 0.00 0.00 39.71 3.18
3090 3224 6.359545 CGTATTCGATTTGTGTCAAGTCAAA 58.640 36.000 0.00 0.00 39.71 2.69
3091 3225 6.299966 CGTATTCGATTTGTGTCAAGTCAAAC 59.700 38.462 0.00 0.00 39.71 2.93
3092 3226 5.553290 TTCGATTTGTGTCAAGTCAAACA 57.447 34.783 0.00 0.00 36.58 2.83
3093 3227 5.749596 TCGATTTGTGTCAAGTCAAACAT 57.250 34.783 5.99 0.00 36.58 2.71
3094 3228 5.747565 TCGATTTGTGTCAAGTCAAACATC 58.252 37.500 5.99 0.00 36.58 3.06
3095 3229 4.608470 CGATTTGTGTCAAGTCAAACATCG 59.392 41.667 5.99 0.00 36.58 3.84
3096 3230 3.332761 TTGTGTCAAGTCAAACATCGC 57.667 42.857 0.00 0.00 0.00 4.58
3097 3231 2.284190 TGTGTCAAGTCAAACATCGCA 58.716 42.857 0.00 0.00 0.00 5.10
3098 3232 2.680339 TGTGTCAAGTCAAACATCGCAA 59.320 40.909 0.00 0.00 0.00 4.85
3099 3233 3.127721 TGTGTCAAGTCAAACATCGCAAA 59.872 39.130 0.00 0.00 0.00 3.68
3100 3234 3.725740 GTGTCAAGTCAAACATCGCAAAG 59.274 43.478 0.00 0.00 0.00 2.77
3101 3235 3.376859 TGTCAAGTCAAACATCGCAAAGT 59.623 39.130 0.00 0.00 0.00 2.66
3102 3236 4.142491 TGTCAAGTCAAACATCGCAAAGTT 60.142 37.500 0.00 0.00 0.00 2.66
3103 3237 4.798387 GTCAAGTCAAACATCGCAAAGTTT 59.202 37.500 0.00 0.00 38.40 2.66
3108 3242 3.791973 AAACATCGCAAAGTTTGACCA 57.208 38.095 19.82 2.09 36.65 4.02
3109 3243 3.791973 AACATCGCAAAGTTTGACCAA 57.208 38.095 19.82 1.33 0.00 3.67
3110 3244 3.791973 ACATCGCAAAGTTTGACCAAA 57.208 38.095 19.82 0.00 0.00 3.28
3111 3245 4.320608 ACATCGCAAAGTTTGACCAAAT 57.679 36.364 19.82 1.93 32.36 2.32
3112 3246 4.692228 ACATCGCAAAGTTTGACCAAATT 58.308 34.783 19.82 0.00 32.36 1.82
3113 3247 5.115480 ACATCGCAAAGTTTGACCAAATTT 58.885 33.333 19.82 0.00 32.66 1.82
3114 3248 6.276847 ACATCGCAAAGTTTGACCAAATTTA 58.723 32.000 19.82 0.00 31.37 1.40
3115 3249 6.928492 ACATCGCAAAGTTTGACCAAATTTAT 59.072 30.769 19.82 0.00 31.37 1.40
3116 3250 8.085296 ACATCGCAAAGTTTGACCAAATTTATA 58.915 29.630 19.82 0.00 31.37 0.98
3117 3251 9.086336 CATCGCAAAGTTTGACCAAATTTATAT 57.914 29.630 19.82 0.00 31.37 0.86
3118 3252 8.459521 TCGCAAAGTTTGACCAAATTTATATG 57.540 30.769 19.82 1.73 31.37 1.78
3119 3253 8.300286 TCGCAAAGTTTGACCAAATTTATATGA 58.700 29.630 19.82 0.00 31.37 2.15
3120 3254 8.920665 CGCAAAGTTTGACCAAATTTATATGAA 58.079 29.630 19.82 0.00 31.37 2.57
3200 3334 8.856490 AACGAATCTAACAATATTGATTTGGC 57.144 30.769 22.16 4.96 35.65 4.52
3201 3335 7.995289 ACGAATCTAACAATATTGATTTGGCA 58.005 30.769 22.16 0.00 35.65 4.92
3202 3336 8.632679 ACGAATCTAACAATATTGATTTGGCAT 58.367 29.630 22.16 1.82 35.65 4.40
3203 3337 9.467258 CGAATCTAACAATATTGATTTGGCATT 57.533 29.630 22.16 9.60 30.64 3.56
3217 3351 9.531942 TTGATTTGGCATTATGAATGTTGATAC 57.468 29.630 0.00 0.00 41.01 2.24
3218 3352 8.916062 TGATTTGGCATTATGAATGTTGATACT 58.084 29.630 0.00 0.00 41.01 2.12
3219 3353 9.754382 GATTTGGCATTATGAATGTTGATACTT 57.246 29.630 0.00 0.00 41.01 2.24
3221 3355 9.941325 TTTGGCATTATGAATGTTGATACTTTT 57.059 25.926 0.00 0.00 41.01 2.27
3222 3356 9.941325 TTGGCATTATGAATGTTGATACTTTTT 57.059 25.926 0.00 0.00 41.01 1.94
3279 3413 9.719355 TGACTTTAGACAAAACTTATATGCAGA 57.281 29.630 0.00 0.00 0.00 4.26
3280 3414 9.974750 GACTTTAGACAAAACTTATATGCAGAC 57.025 33.333 0.00 0.00 0.00 3.51
3281 3415 9.726438 ACTTTAGACAAAACTTATATGCAGACT 57.274 29.630 0.00 0.00 0.00 3.24
3291 3425 8.507524 AACTTATATGCAGACTAAAAAGGACC 57.492 34.615 0.00 0.00 0.00 4.46
3292 3426 6.761714 ACTTATATGCAGACTAAAAAGGACCG 59.238 38.462 0.00 0.00 0.00 4.79
3293 3427 2.178912 TGCAGACTAAAAAGGACCGG 57.821 50.000 0.00 0.00 0.00 5.28
3294 3428 1.695242 TGCAGACTAAAAAGGACCGGA 59.305 47.619 9.46 0.00 0.00 5.14
3295 3429 2.289444 TGCAGACTAAAAAGGACCGGAG 60.289 50.000 9.46 0.00 0.00 4.63
3624 3760 4.092771 TGTCGTGTGTGCTCTCTAATAC 57.907 45.455 0.00 0.00 0.00 1.89
3693 3829 6.422776 AATGTGACAAATTATGACGTCTCC 57.577 37.500 17.92 0.00 0.00 3.71
3743 3879 7.502226 TGATGGTCATTGTTCTTAGTGAAGTTT 59.498 33.333 0.00 0.00 35.01 2.66
3747 3883 7.857885 GGTCATTGTTCTTAGTGAAGTTTCTTG 59.142 37.037 0.00 0.00 35.01 3.02
3825 3961 3.871594 CGGATGAAAACTGAGGTACCATC 59.128 47.826 15.94 9.39 0.00 3.51
3937 5717 4.156008 GGTTTGCTAGTGACCAATAACCAG 59.844 45.833 0.00 0.00 33.61 4.00
4209 6004 9.502091 AGTGTCTTAGAAGCAACAAAACATATA 57.498 29.630 0.00 0.00 0.00 0.86
4293 6088 3.553508 CCTGATGTTTTGAACTGGGCAAG 60.554 47.826 0.00 0.00 0.00 4.01
4345 6140 5.432645 TGTCTGTGTTTGTAGAATTGACCA 58.567 37.500 0.00 0.00 0.00 4.02
4556 6354 8.010733 TCAGATTTTCTGTTGGTTGATTCTTT 57.989 30.769 4.56 0.00 44.58 2.52
4715 6513 7.746475 GCTTGTACTCTTGAATCAAACATGTAC 59.254 37.037 0.00 14.50 0.00 2.90
4772 7658 3.608316 TTCATTAAAATGGCAGCCCAC 57.392 42.857 9.64 0.00 45.77 4.61
4834 7721 2.100749 CCACCACTTTGGGTCTTTTGTC 59.899 50.000 0.00 0.00 43.37 3.18
4947 7848 7.987649 CAATTATTGCCTGTGCCATTAATTTT 58.012 30.769 0.00 0.00 36.33 1.82
5033 7934 5.362717 TGGTATGGTAATATATGCTCCTCCG 59.637 44.000 0.00 0.00 0.00 4.63
5094 8020 8.975663 TCTTGAGTCGAGAATTAATACCTCTA 57.024 34.615 7.69 3.36 0.00 2.43
5103 8029 9.182933 CGAGAATTAATACCTCTAGTTGCTTAC 57.817 37.037 12.93 0.00 0.00 2.34
5251 8177 3.788227 ACAGTTCTTTATCAGCCACCA 57.212 42.857 0.00 0.00 0.00 4.17
5442 8373 5.776744 ACATGAAAATTTCTGGAGAAGCAC 58.223 37.500 7.29 0.00 35.21 4.40
5477 8408 6.150976 TGCCATGTAGAGTTTCCAGTAAAATG 59.849 38.462 0.00 0.00 0.00 2.32
5511 8472 9.778993 CAGTGAATAATGAATTTGAACTCGAAT 57.221 29.630 0.00 0.00 0.00 3.34
5613 8574 4.085357 AGCATGAGTTTGGAGTGTTACA 57.915 40.909 0.00 0.00 0.00 2.41
5683 8651 0.312102 GGGCTTTCTGAGTTGCACAC 59.688 55.000 0.00 0.00 0.00 3.82
5694 8662 1.376683 TTGCACACGGGATGGTAGC 60.377 57.895 0.00 0.00 0.00 3.58
5695 8663 2.118233 TTGCACACGGGATGGTAGCA 62.118 55.000 0.00 0.00 34.29 3.49
5784 8753 3.204827 CAGATCCTTTGGCGCGGG 61.205 66.667 8.83 0.00 0.00 6.13
5880 8849 1.378531 TGTGAAGTTGTGCACTGGAC 58.621 50.000 19.41 13.65 35.12 4.02
5881 8850 1.065491 TGTGAAGTTGTGCACTGGACT 60.065 47.619 19.41 15.64 35.12 3.85
5918 8887 5.391312 AGATTTTCCACTGTGTAATTGCC 57.609 39.130 7.08 0.00 0.00 4.52
5919 8888 4.832266 AGATTTTCCACTGTGTAATTGCCA 59.168 37.500 7.08 0.00 0.00 4.92
5924 8893 1.068333 CACTGTGTAATTGCCAGGCAC 60.068 52.381 15.89 2.65 38.71 5.01
6036 9007 2.925170 AGTCGCAGGGGCTGAACT 60.925 61.111 0.00 0.00 38.10 3.01
6037 9008 2.743928 GTCGCAGGGGCTGAACTG 60.744 66.667 0.00 0.00 38.10 3.16
6038 9009 4.020617 TCGCAGGGGCTGAACTGG 62.021 66.667 0.00 0.00 38.10 4.00
6039 9010 4.020617 CGCAGGGGCTGAACTGGA 62.021 66.667 0.00 0.00 38.10 3.86
6040 9011 2.360475 GCAGGGGCTGAACTGGAC 60.360 66.667 0.00 0.00 36.96 4.02
6060 9048 0.824759 GTTGTCAGAGCCGAGGGTAT 59.175 55.000 0.00 0.00 0.00 2.73
6069 9057 4.707448 CAGAGCCGAGGGTATCTATTGTAT 59.293 45.833 0.00 0.00 0.00 2.29
6113 9101 4.759782 AGAACTTGGACGATCATGTTAGG 58.240 43.478 11.46 0.00 35.88 2.69
6266 9254 1.355720 AGGGGTGGATGAGGAAAACAG 59.644 52.381 0.00 0.00 0.00 3.16
6280 9268 5.253330 AGGAAAACAGCCGAGATGAAAATA 58.747 37.500 0.00 0.00 0.00 1.40
6287 9275 8.450578 AACAGCCGAGATGAAAATATTATCAA 57.549 30.769 0.00 0.00 0.00 2.57
6309 9297 5.499139 ACACGAACATGATGTGTCTTTTT 57.501 34.783 13.79 0.00 42.87 1.94
6325 9313 4.408378 TTTTTACTGCGGGGGAGC 57.592 55.556 0.00 0.00 37.71 4.70
6326 9314 1.456726 TTTTTACTGCGGGGGAGCA 59.543 52.632 0.00 0.00 45.96 4.26
6327 9315 0.891904 TTTTTACTGCGGGGGAGCAC 60.892 55.000 0.00 0.00 42.92 4.40
6328 9316 3.599285 TTTACTGCGGGGGAGCACG 62.599 63.158 0.00 0.00 42.92 5.34
6333 9321 4.778143 GCGGGGGAGCACGAACAT 62.778 66.667 0.00 0.00 37.05 2.71
6538 12977 9.579610 AAACAATTTTCATAAAAAGAAATCGCG 57.420 25.926 0.00 0.00 37.76 5.87
6661 13103 3.196039 TGACGCACACCTAGGCTTTATAA 59.804 43.478 9.30 0.00 0.00 0.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 6.315144 GGTCAGTGCATTGTACATATGTGTTA 59.685 38.462 18.81 3.53 39.77 2.41
8 9 4.119136 TCGGTCAGTGCATTGTACATATG 58.881 43.478 9.23 0.00 0.00 1.78
10 11 3.878160 TCGGTCAGTGCATTGTACATA 57.122 42.857 9.23 0.00 0.00 2.29
11 12 2.742053 GTTCGGTCAGTGCATTGTACAT 59.258 45.455 9.23 0.00 0.00 2.29
12 13 2.139917 GTTCGGTCAGTGCATTGTACA 58.860 47.619 9.23 0.00 0.00 2.90
22 23 3.367646 TCTAGAGATGGTTCGGTCAGT 57.632 47.619 0.00 0.00 0.00 3.41
29 30 7.753309 TTACTGCTAGATCTAGAGATGGTTC 57.247 40.000 30.06 12.22 35.21 3.62
56 57 7.928706 CCCACAATGAAAATTTTGTAGGTGTAA 59.071 33.333 8.47 0.00 34.42 2.41
79 81 6.208279 TGATTTTAAATGAATCCCCATCCCA 58.792 36.000 0.00 0.00 33.56 4.37
81 83 6.554605 TCCTGATTTTAAATGAATCCCCATCC 59.445 38.462 0.00 0.00 33.56 3.51
112 114 6.127703 TGTGTACTCTAGAGTCTAATGCAACC 60.128 42.308 28.42 12.37 42.54 3.77
150 152 0.605319 CGTGGGGTACAACATGTGCT 60.605 55.000 0.00 0.00 33.35 4.40
152 154 2.550487 CCGTGGGGTACAACATGTG 58.450 57.895 0.00 0.00 0.00 3.21
165 167 0.673333 TGCTGCAATCTGTACCGTGG 60.673 55.000 0.00 0.00 0.00 4.94
175 177 0.391130 TACTCCCGTGTGCTGCAATC 60.391 55.000 2.77 0.00 0.00 2.67
179 181 1.079127 ATGTACTCCCGTGTGCTGC 60.079 57.895 0.00 0.00 0.00 5.25
188 190 4.141390 ACTCCCAATGAATCATGTACTCCC 60.141 45.833 0.00 0.00 0.00 4.30
202 204 6.538742 CAGTACTACAACCAATACTCCCAATG 59.461 42.308 0.00 0.00 0.00 2.82
205 207 5.046878 CACAGTACTACAACCAATACTCCCA 60.047 44.000 0.00 0.00 0.00 4.37
209 211 6.659745 TCACACAGTACTACAACCAATACT 57.340 37.500 0.00 0.00 0.00 2.12
254 256 9.409312 CTTCATGCAAAATGAACATGTACTTTA 57.591 29.630 0.00 0.00 41.51 1.85
257 259 6.985117 ACTTCATGCAAAATGAACATGTACT 58.015 32.000 0.00 0.00 41.51 2.73
258 260 8.915871 ATACTTCATGCAAAATGAACATGTAC 57.084 30.769 0.00 0.00 41.51 2.90
269 271 6.338214 TGGCAACTTATACTTCATGCAAAA 57.662 33.333 0.00 0.00 35.57 2.44
280 282 6.062095 ACTTCCCACATATGGCAACTTATAC 58.938 40.000 7.80 0.00 45.76 1.47
289 291 5.731591 GGTAGTATACTTCCCACATATGGC 58.268 45.833 15.82 0.00 42.63 4.40
446 452 2.092429 TCATGGGCCAGTATCTCCAAAC 60.092 50.000 13.78 0.00 32.56 2.93
462 471 3.403613 TTTCATCATCGCGTTTCATGG 57.596 42.857 5.77 0.00 0.00 3.66
467 476 3.427503 GGACCATTTTCATCATCGCGTTT 60.428 43.478 5.77 0.00 0.00 3.60
537 565 7.865385 TCTTCTTCTTCTTCTTCTTCTTCTTCG 59.135 37.037 0.00 0.00 0.00 3.79
546 574 8.482128 TGTTCTTCTTCTTCTTCTTCTTCTTCT 58.518 33.333 0.00 0.00 0.00 2.85
547 575 8.655651 TGTTCTTCTTCTTCTTCTTCTTCTTC 57.344 34.615 0.00 0.00 0.00 2.87
548 576 9.108284 CTTGTTCTTCTTCTTCTTCTTCTTCTT 57.892 33.333 0.00 0.00 0.00 2.52
549 577 8.482128 TCTTGTTCTTCTTCTTCTTCTTCTTCT 58.518 33.333 0.00 0.00 0.00 2.85
550 578 8.655651 TCTTGTTCTTCTTCTTCTTCTTCTTC 57.344 34.615 0.00 0.00 0.00 2.87
551 579 9.108284 CTTCTTGTTCTTCTTCTTCTTCTTCTT 57.892 33.333 0.00 0.00 0.00 2.52
552 580 8.482128 TCTTCTTGTTCTTCTTCTTCTTCTTCT 58.518 33.333 0.00 0.00 0.00 2.85
553 581 8.655651 TCTTCTTGTTCTTCTTCTTCTTCTTC 57.344 34.615 0.00 0.00 0.00 2.87
554 582 9.108284 CTTCTTCTTGTTCTTCTTCTTCTTCTT 57.892 33.333 0.00 0.00 0.00 2.52
555 583 8.482128 TCTTCTTCTTGTTCTTCTTCTTCTTCT 58.518 33.333 0.00 0.00 0.00 2.85
556 584 8.655651 TCTTCTTCTTGTTCTTCTTCTTCTTC 57.344 34.615 0.00 0.00 0.00 2.87
557 585 9.454859 TTTCTTCTTCTTGTTCTTCTTCTTCTT 57.545 29.630 0.00 0.00 0.00 2.52
558 586 9.454859 TTTTCTTCTTCTTGTTCTTCTTCTTCT 57.545 29.630 0.00 0.00 0.00 2.85
559 587 9.497030 GTTTTCTTCTTCTTGTTCTTCTTCTTC 57.503 33.333 0.00 0.00 0.00 2.87
560 588 9.014297 TGTTTTCTTCTTCTTGTTCTTCTTCTT 57.986 29.630 0.00 0.00 0.00 2.52
561 589 8.567285 TGTTTTCTTCTTCTTGTTCTTCTTCT 57.433 30.769 0.00 0.00 0.00 2.85
562 590 9.230932 CATGTTTTCTTCTTCTTGTTCTTCTTC 57.769 33.333 0.00 0.00 0.00 2.87
563 591 8.743714 ACATGTTTTCTTCTTCTTGTTCTTCTT 58.256 29.630 0.00 0.00 0.00 2.52
564 592 8.286191 ACATGTTTTCTTCTTCTTGTTCTTCT 57.714 30.769 0.00 0.00 0.00 2.85
567 595 8.499162 CGATACATGTTTTCTTCTTCTTGTTCT 58.501 33.333 2.30 0.00 0.00 3.01
568 596 8.495949 TCGATACATGTTTTCTTCTTCTTGTTC 58.504 33.333 2.30 0.00 0.00 3.18
569 597 8.283291 GTCGATACATGTTTTCTTCTTCTTGTT 58.717 33.333 2.30 0.00 0.00 2.83
570 598 7.441157 TGTCGATACATGTTTTCTTCTTCTTGT 59.559 33.333 2.30 0.00 0.00 3.16
571 599 7.796838 TGTCGATACATGTTTTCTTCTTCTTG 58.203 34.615 2.30 0.00 0.00 3.02
572 600 7.962964 TGTCGATACATGTTTTCTTCTTCTT 57.037 32.000 2.30 0.00 0.00 2.52
573 601 7.095187 GGTTGTCGATACATGTTTTCTTCTTCT 60.095 37.037 2.30 0.00 34.97 2.85
574 602 7.015877 GGTTGTCGATACATGTTTTCTTCTTC 58.984 38.462 2.30 0.00 34.97 2.87
575 603 6.710744 AGGTTGTCGATACATGTTTTCTTCTT 59.289 34.615 2.30 0.00 34.97 2.52
576 604 6.231211 AGGTTGTCGATACATGTTTTCTTCT 58.769 36.000 2.30 0.00 34.97 2.85
577 605 6.402226 GGAGGTTGTCGATACATGTTTTCTTC 60.402 42.308 2.30 0.00 34.97 2.87
578 606 5.411669 GGAGGTTGTCGATACATGTTTTCTT 59.588 40.000 2.30 0.00 34.97 2.52
579 607 4.935808 GGAGGTTGTCGATACATGTTTTCT 59.064 41.667 2.30 0.00 34.97 2.52
580 608 4.094442 GGGAGGTTGTCGATACATGTTTTC 59.906 45.833 2.30 0.65 34.97 2.29
627 666 5.777223 TCACAATCATGGAATTTTGGTGGTA 59.223 36.000 0.00 0.00 0.00 3.25
638 677 4.455533 GCACTACTTGTCACAATCATGGAA 59.544 41.667 0.00 0.00 0.00 3.53
675 714 6.547141 TCAAACTTCTCTGGTGATGAAATGTT 59.453 34.615 0.00 0.00 0.00 2.71
882 957 1.166531 AACTGCCGTCTGTTTGCTCC 61.167 55.000 0.00 0.00 31.48 4.70
907 982 3.838565 TGGTATTTTGGTTGGAGCTGAA 58.161 40.909 0.00 0.00 0.00 3.02
923 998 5.885912 GTGGTGTCTGTGGATAATTTGGTAT 59.114 40.000 0.00 0.00 0.00 2.73
926 1001 4.335416 AGTGGTGTCTGTGGATAATTTGG 58.665 43.478 0.00 0.00 0.00 3.28
928 1003 4.567747 GGGAGTGGTGTCTGTGGATAATTT 60.568 45.833 0.00 0.00 0.00 1.82
1106 1205 2.439701 CGAGGGTAGAGGACGGCA 60.440 66.667 0.00 0.00 0.00 5.69
1370 1469 3.255888 TCATACTACCGCAGCTCCATTAG 59.744 47.826 0.00 0.00 0.00 1.73
1393 1492 2.022195 GGTGAGACCAGCATCGTACTA 58.978 52.381 0.00 0.00 40.34 1.82
1394 1493 0.818296 GGTGAGACCAGCATCGTACT 59.182 55.000 0.00 0.00 40.34 2.73
1395 1494 0.530744 TGGTGAGACCAGCATCGTAC 59.469 55.000 0.00 0.00 44.79 3.67
1423 1523 7.869429 TCAATTTCAGCTTCTTTCTTCCATTTC 59.131 33.333 0.00 0.00 0.00 2.17
1472 1575 6.877322 AGAAATGGTTTGCACGTAGTATTAGT 59.123 34.615 0.00 0.00 41.61 2.24
1473 1576 7.303634 AGAAATGGTTTGCACGTAGTATTAG 57.696 36.000 0.00 0.00 41.61 1.73
1474 1577 7.361371 CCAAGAAATGGTTTGCACGTAGTATTA 60.361 37.037 0.00 0.00 44.85 0.98
1475 1578 6.378582 CAAGAAATGGTTTGCACGTAGTATT 58.621 36.000 0.00 0.00 41.61 1.89
1504 1608 8.940952 CCACTAACAAAATGGAAAAGAAAAACA 58.059 29.630 0.00 0.00 35.33 2.83
1505 1609 8.941977 ACCACTAACAAAATGGAAAAGAAAAAC 58.058 29.630 0.00 0.00 36.94 2.43
1510 1614 7.093727 TGACAACCACTAACAAAATGGAAAAGA 60.094 33.333 0.00 0.00 36.94 2.52
1515 1619 5.441500 TCTGACAACCACTAACAAAATGGA 58.558 37.500 0.00 0.00 36.94 3.41
1539 1643 5.173312 CGACTTACGACATGGATCACATAAC 59.827 44.000 0.00 0.00 45.77 1.89
1556 1660 4.143179 GCCTTGACATGTGTTACGACTTAC 60.143 45.833 1.15 0.00 0.00 2.34
1670 1793 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
1671 1794 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
1672 1795 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
1673 1796 7.985752 ACAAAGACTTATATTTAGGAACGGAGG 59.014 37.037 0.00 0.00 0.00 4.30
1674 1797 8.943909 ACAAAGACTTATATTTAGGAACGGAG 57.056 34.615 0.00 0.00 0.00 4.63
1745 1868 8.677300 GGAGCAAAATGAATGAATCTACACTTA 58.323 33.333 0.00 0.00 0.00 2.24
1746 1869 7.542025 GGAGCAAAATGAATGAATCTACACTT 58.458 34.615 0.00 0.00 0.00 3.16
1747 1870 6.183360 CGGAGCAAAATGAATGAATCTACACT 60.183 38.462 0.00 0.00 0.00 3.55
1748 1871 5.967674 CGGAGCAAAATGAATGAATCTACAC 59.032 40.000 0.00 0.00 0.00 2.90
1749 1872 5.647658 ACGGAGCAAAATGAATGAATCTACA 59.352 36.000 0.00 0.00 0.00 2.74
1750 1873 6.124088 ACGGAGCAAAATGAATGAATCTAC 57.876 37.500 0.00 0.00 0.00 2.59
1751 1874 7.498900 ACATACGGAGCAAAATGAATGAATCTA 59.501 33.333 0.00 0.00 0.00 1.98
1752 1875 6.319658 ACATACGGAGCAAAATGAATGAATCT 59.680 34.615 0.00 0.00 0.00 2.40
1753 1876 6.498304 ACATACGGAGCAAAATGAATGAATC 58.502 36.000 0.00 0.00 0.00 2.52
1754 1877 6.455360 ACATACGGAGCAAAATGAATGAAT 57.545 33.333 0.00 0.00 0.00 2.57
1755 1878 5.895636 ACATACGGAGCAAAATGAATGAA 57.104 34.783 0.00 0.00 0.00 2.57
1756 1879 6.112734 ACTACATACGGAGCAAAATGAATGA 58.887 36.000 0.00 0.00 0.00 2.57
1757 1880 6.363577 ACTACATACGGAGCAAAATGAATG 57.636 37.500 0.00 0.00 0.00 2.67
1758 1881 5.527582 GGACTACATACGGAGCAAAATGAAT 59.472 40.000 0.00 0.00 0.00 2.57
1759 1882 4.873827 GGACTACATACGGAGCAAAATGAA 59.126 41.667 0.00 0.00 0.00 2.57
1760 1883 4.081365 TGGACTACATACGGAGCAAAATGA 60.081 41.667 0.00 0.00 0.00 2.57
1761 1884 4.188462 TGGACTACATACGGAGCAAAATG 58.812 43.478 0.00 0.00 0.00 2.32
1762 1885 4.481368 TGGACTACATACGGAGCAAAAT 57.519 40.909 0.00 0.00 0.00 1.82
1763 1886 3.965379 TGGACTACATACGGAGCAAAA 57.035 42.857 0.00 0.00 0.00 2.44
1764 1887 3.704566 AGATGGACTACATACGGAGCAAA 59.295 43.478 0.00 0.00 40.72 3.68
1765 1888 3.296854 AGATGGACTACATACGGAGCAA 58.703 45.455 0.00 0.00 40.72 3.91
1766 1889 2.945456 AGATGGACTACATACGGAGCA 58.055 47.619 0.00 0.00 40.72 4.26
1767 1890 4.073549 ACTAGATGGACTACATACGGAGC 58.926 47.826 0.00 0.00 40.72 4.70
1768 1891 5.763698 TCAACTAGATGGACTACATACGGAG 59.236 44.000 0.00 0.00 40.72 4.63
1769 1892 5.687780 TCAACTAGATGGACTACATACGGA 58.312 41.667 0.00 0.00 40.72 4.69
1770 1893 6.387041 TTCAACTAGATGGACTACATACGG 57.613 41.667 0.00 0.00 40.72 4.02
1771 1894 7.877003 AGATTCAACTAGATGGACTACATACG 58.123 38.462 0.00 0.00 40.72 3.06
1772 1895 9.073475 AGAGATTCAACTAGATGGACTACATAC 57.927 37.037 0.00 0.00 40.72 2.39
1774 1897 9.073475 GTAGAGATTCAACTAGATGGACTACAT 57.927 37.037 0.00 0.00 44.18 2.29
1775 1898 8.053355 TGTAGAGATTCAACTAGATGGACTACA 58.947 37.037 0.00 1.59 34.91 2.74
1776 1899 8.453238 TGTAGAGATTCAACTAGATGGACTAC 57.547 38.462 0.00 0.00 0.00 2.73
1777 1900 9.475620 TTTGTAGAGATTCAACTAGATGGACTA 57.524 33.333 0.00 0.00 0.00 2.59
1778 1901 7.962995 TTGTAGAGATTCAACTAGATGGACT 57.037 36.000 0.00 0.00 0.00 3.85
1779 1902 8.470805 TCTTTGTAGAGATTCAACTAGATGGAC 58.529 37.037 0.00 0.00 0.00 4.02
1780 1903 8.470805 GTCTTTGTAGAGATTCAACTAGATGGA 58.529 37.037 0.00 0.00 0.00 3.41
1781 1904 8.474025 AGTCTTTGTAGAGATTCAACTAGATGG 58.526 37.037 0.00 0.00 0.00 3.51
1782 1905 9.868277 AAGTCTTTGTAGAGATTCAACTAGATG 57.132 33.333 0.00 0.00 0.00 2.90
1799 1922 7.985752 CCTCCGTTCCTAAATATAAGTCTTTGT 59.014 37.037 0.00 0.00 0.00 2.83
1800 1923 7.441458 CCCTCCGTTCCTAAATATAAGTCTTTG 59.559 40.741 0.00 0.00 0.00 2.77
1801 1924 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
1802 1925 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
1803 1926 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
1804 1927 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
1805 1928 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
1806 1929 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
1807 1930 7.731688 ACATACTCCCTCCGTTCCTAAATATAA 59.268 37.037 0.00 0.00 0.00 0.98
1808 1931 7.177921 CACATACTCCCTCCGTTCCTAAATATA 59.822 40.741 0.00 0.00 0.00 0.86
1809 1932 6.014499 CACATACTCCCTCCGTTCCTAAATAT 60.014 42.308 0.00 0.00 0.00 1.28
1810 1933 5.303589 CACATACTCCCTCCGTTCCTAAATA 59.696 44.000 0.00 0.00 0.00 1.40
1811 1934 4.101119 CACATACTCCCTCCGTTCCTAAAT 59.899 45.833 0.00 0.00 0.00 1.40
1812 1935 3.449737 CACATACTCCCTCCGTTCCTAAA 59.550 47.826 0.00 0.00 0.00 1.85
1813 1936 3.028850 CACATACTCCCTCCGTTCCTAA 58.971 50.000 0.00 0.00 0.00 2.69
1814 1937 2.242965 TCACATACTCCCTCCGTTCCTA 59.757 50.000 0.00 0.00 0.00 2.94
1815 1938 1.006758 TCACATACTCCCTCCGTTCCT 59.993 52.381 0.00 0.00 0.00 3.36
1816 1939 1.481871 TCACATACTCCCTCCGTTCC 58.518 55.000 0.00 0.00 0.00 3.62
1817 1940 3.821421 AATCACATACTCCCTCCGTTC 57.179 47.619 0.00 0.00 0.00 3.95
1818 1941 5.836898 TGTATAATCACATACTCCCTCCGTT 59.163 40.000 0.00 0.00 33.37 4.44
1819 1942 5.391256 TGTATAATCACATACTCCCTCCGT 58.609 41.667 0.00 0.00 33.37 4.69
1820 1943 5.977489 TGTATAATCACATACTCCCTCCG 57.023 43.478 0.00 0.00 33.37 4.63
1821 1944 7.736893 AGTTTGTATAATCACATACTCCCTCC 58.263 38.462 0.00 0.00 36.39 4.30
1830 1953 9.302345 CGTCTGAGTAAGTTTGTATAATCACAT 57.698 33.333 0.00 0.00 0.00 3.21
2158 2284 5.067805 CCACAAAAAGCTTTCCTACTGAACT 59.932 40.000 13.10 0.00 31.05 3.01
2197 2323 8.303780 TCAGCATATTTGGAATCCACAAATTA 57.696 30.769 0.00 0.00 43.81 1.40
2308 2434 7.490962 TCTATTACAACAGTTGTTTCAGTGG 57.509 36.000 23.88 5.82 42.22 4.00
2311 2437 8.773645 TCACATCTATTACAACAGTTGTTTCAG 58.226 33.333 23.88 16.64 42.22 3.02
2318 2448 7.604164 CAGTTCCTCACATCTATTACAACAGTT 59.396 37.037 0.00 0.00 0.00 3.16
2359 2491 7.678947 ATGCAGGAGATAAAATACATAGCAC 57.321 36.000 0.00 0.00 0.00 4.40
2778 2912 4.082190 GCTACGAGCAATATGTATCCTGGA 60.082 45.833 0.00 0.00 41.89 3.86
2841 2975 2.818130 ATGCACGAAATGTTGCCTTT 57.182 40.000 0.00 0.00 0.00 3.11
2962 3096 2.230750 AGAAAGGCAATTCAAGAGCAGC 59.769 45.455 5.94 0.00 0.00 5.25
3046 3180 0.743345 CGGAGTAAAAAGGGCCGGAG 60.743 60.000 5.05 0.00 38.40 4.63
3047 3181 1.297364 CGGAGTAAAAAGGGCCGGA 59.703 57.895 5.05 0.00 38.40 5.14
3048 3182 2.404186 GCGGAGTAAAAAGGGCCGG 61.404 63.158 0.00 0.00 42.09 6.13
3049 3183 2.746803 CGCGGAGTAAAAAGGGCCG 61.747 63.158 0.00 0.00 44.47 6.13
3050 3184 0.391528 TACGCGGAGTAAAAAGGGCC 60.392 55.000 12.47 0.00 31.26 5.80
3051 3185 1.660167 ATACGCGGAGTAAAAAGGGC 58.340 50.000 12.47 0.00 39.04 5.19
3052 3186 2.283351 CGAATACGCGGAGTAAAAAGGG 59.717 50.000 12.47 0.00 39.04 3.95
3053 3187 3.181397 TCGAATACGCGGAGTAAAAAGG 58.819 45.455 12.47 0.00 39.04 3.11
3054 3188 5.385396 AATCGAATACGCGGAGTAAAAAG 57.615 39.130 12.47 0.00 39.04 2.27
3055 3189 5.120519 ACAAATCGAATACGCGGAGTAAAAA 59.879 36.000 12.47 0.00 39.04 1.94
3056 3190 4.626604 ACAAATCGAATACGCGGAGTAAAA 59.373 37.500 12.47 0.00 39.04 1.52
3057 3191 4.031991 CACAAATCGAATACGCGGAGTAAA 59.968 41.667 12.47 0.00 39.04 2.01
3058 3192 3.548668 CACAAATCGAATACGCGGAGTAA 59.451 43.478 12.47 0.00 39.04 2.24
3059 3193 3.110358 CACAAATCGAATACGCGGAGTA 58.890 45.455 12.47 0.00 40.03 2.59
3060 3194 1.924524 CACAAATCGAATACGCGGAGT 59.075 47.619 12.47 0.00 39.58 3.85
3061 3195 1.924524 ACACAAATCGAATACGCGGAG 59.075 47.619 12.47 0.00 39.58 4.63
3062 3196 1.921887 GACACAAATCGAATACGCGGA 59.078 47.619 12.47 0.00 39.58 5.54
3063 3197 1.656594 TGACACAAATCGAATACGCGG 59.343 47.619 12.47 0.00 39.58 6.46
3064 3198 3.181534 ACTTGACACAAATCGAATACGCG 60.182 43.478 3.53 3.53 39.58 6.01
3065 3199 4.143200 TGACTTGACACAAATCGAATACGC 60.143 41.667 0.00 0.00 39.58 4.42
3066 3200 5.509605 TGACTTGACACAAATCGAATACG 57.490 39.130 0.00 0.00 41.26 3.06
3067 3201 7.129622 TGTTTGACTTGACACAAATCGAATAC 58.870 34.615 0.00 0.00 38.09 1.89
3068 3202 7.252965 TGTTTGACTTGACACAAATCGAATA 57.747 32.000 0.00 0.00 38.09 1.75
3069 3203 6.130298 TGTTTGACTTGACACAAATCGAAT 57.870 33.333 0.00 0.00 38.09 3.34
3070 3204 5.553290 TGTTTGACTTGACACAAATCGAA 57.447 34.783 0.00 0.00 38.09 3.71
3071 3205 5.558083 CGATGTTTGACTTGACACAAATCGA 60.558 40.000 0.00 0.00 39.06 3.59
3072 3206 4.608470 CGATGTTTGACTTGACACAAATCG 59.392 41.667 0.00 0.00 38.09 3.34
3073 3207 4.379793 GCGATGTTTGACTTGACACAAATC 59.620 41.667 0.00 0.00 38.09 2.17
3074 3208 4.202000 TGCGATGTTTGACTTGACACAAAT 60.202 37.500 0.00 0.00 38.09 2.32
3075 3209 3.127721 TGCGATGTTTGACTTGACACAAA 59.872 39.130 0.00 0.00 34.33 2.83
3076 3210 2.680339 TGCGATGTTTGACTTGACACAA 59.320 40.909 0.00 0.00 0.00 3.33
3077 3211 2.284190 TGCGATGTTTGACTTGACACA 58.716 42.857 0.00 0.00 0.00 3.72
3078 3212 3.332761 TTGCGATGTTTGACTTGACAC 57.667 42.857 0.00 0.00 0.00 3.67
3079 3213 3.376859 ACTTTGCGATGTTTGACTTGACA 59.623 39.130 0.00 0.00 0.00 3.58
3080 3214 3.952535 ACTTTGCGATGTTTGACTTGAC 58.047 40.909 0.00 0.00 0.00 3.18
3081 3215 4.630894 AACTTTGCGATGTTTGACTTGA 57.369 36.364 0.00 0.00 0.00 3.02
3088 3222 3.791973 TGGTCAAACTTTGCGATGTTT 57.208 38.095 11.26 11.26 36.91 2.83
3089 3223 3.791973 TTGGTCAAACTTTGCGATGTT 57.208 38.095 0.00 0.00 0.00 2.71
3090 3224 3.791973 TTTGGTCAAACTTTGCGATGT 57.208 38.095 0.00 0.00 0.00 3.06
3091 3225 5.655893 AAATTTGGTCAAACTTTGCGATG 57.344 34.783 0.00 0.00 32.51 3.84
3092 3226 9.086336 CATATAAATTTGGTCAAACTTTGCGAT 57.914 29.630 0.00 0.00 32.51 4.58
3093 3227 8.300286 TCATATAAATTTGGTCAAACTTTGCGA 58.700 29.630 0.00 0.00 32.51 5.10
3094 3228 8.459521 TCATATAAATTTGGTCAAACTTTGCG 57.540 30.769 0.00 0.00 32.51 4.85
3174 3308 9.944663 GCCAAATCAATATTGTTAGATTCGTTA 57.055 29.630 14.97 0.00 30.87 3.18
3175 3309 8.465999 TGCCAAATCAATATTGTTAGATTCGTT 58.534 29.630 14.97 0.00 30.87 3.85
3176 3310 7.995289 TGCCAAATCAATATTGTTAGATTCGT 58.005 30.769 14.97 0.00 30.87 3.85
3177 3311 9.467258 AATGCCAAATCAATATTGTTAGATTCG 57.533 29.630 14.97 0.00 30.87 3.34
3191 3325 9.531942 GTATCAACATTCATAATGCCAAATCAA 57.468 29.630 0.00 0.00 42.69 2.57
3192 3326 8.916062 AGTATCAACATTCATAATGCCAAATCA 58.084 29.630 0.00 0.00 42.69 2.57
3193 3327 9.754382 AAGTATCAACATTCATAATGCCAAATC 57.246 29.630 0.00 0.00 42.69 2.17
3195 3329 9.941325 AAAAGTATCAACATTCATAATGCCAAA 57.059 25.926 0.00 0.00 42.69 3.28
3196 3330 9.941325 AAAAAGTATCAACATTCATAATGCCAA 57.059 25.926 0.00 0.00 42.69 4.52
3253 3387 9.719355 TCTGCATATAAGTTTTGTCTAAAGTCA 57.281 29.630 0.00 0.00 0.00 3.41
3254 3388 9.974750 GTCTGCATATAAGTTTTGTCTAAAGTC 57.025 33.333 0.00 0.00 0.00 3.01
3255 3389 9.726438 AGTCTGCATATAAGTTTTGTCTAAAGT 57.274 29.630 0.00 0.00 0.00 2.66
3265 3399 8.957466 GGTCCTTTTTAGTCTGCATATAAGTTT 58.043 33.333 0.00 0.00 0.00 2.66
3266 3400 7.280205 CGGTCCTTTTTAGTCTGCATATAAGTT 59.720 37.037 0.00 0.00 0.00 2.66
3267 3401 6.761714 CGGTCCTTTTTAGTCTGCATATAAGT 59.238 38.462 0.00 0.00 0.00 2.24
3268 3402 6.202954 CCGGTCCTTTTTAGTCTGCATATAAG 59.797 42.308 0.00 0.00 0.00 1.73
3269 3403 6.053005 CCGGTCCTTTTTAGTCTGCATATAA 58.947 40.000 0.00 0.00 0.00 0.98
3270 3404 5.364446 TCCGGTCCTTTTTAGTCTGCATATA 59.636 40.000 0.00 0.00 0.00 0.86
3271 3405 4.163458 TCCGGTCCTTTTTAGTCTGCATAT 59.837 41.667 0.00 0.00 0.00 1.78
3272 3406 3.516300 TCCGGTCCTTTTTAGTCTGCATA 59.484 43.478 0.00 0.00 0.00 3.14
3273 3407 2.304761 TCCGGTCCTTTTTAGTCTGCAT 59.695 45.455 0.00 0.00 0.00 3.96
3274 3408 1.695242 TCCGGTCCTTTTTAGTCTGCA 59.305 47.619 0.00 0.00 0.00 4.41
3275 3409 2.347731 CTCCGGTCCTTTTTAGTCTGC 58.652 52.381 0.00 0.00 0.00 4.26
3276 3410 2.354805 CCCTCCGGTCCTTTTTAGTCTG 60.355 54.545 0.00 0.00 0.00 3.51
3277 3411 1.907255 CCCTCCGGTCCTTTTTAGTCT 59.093 52.381 0.00 0.00 0.00 3.24
3278 3412 1.904537 TCCCTCCGGTCCTTTTTAGTC 59.095 52.381 0.00 0.00 0.00 2.59
3279 3413 1.907255 CTCCCTCCGGTCCTTTTTAGT 59.093 52.381 0.00 0.00 0.00 2.24
3280 3414 1.907255 ACTCCCTCCGGTCCTTTTTAG 59.093 52.381 0.00 0.00 0.00 1.85
3281 3415 2.034436 ACTCCCTCCGGTCCTTTTTA 57.966 50.000 0.00 0.00 0.00 1.52
3282 3416 1.627329 GTACTCCCTCCGGTCCTTTTT 59.373 52.381 0.00 0.00 0.00 1.94
3283 3417 1.203275 AGTACTCCCTCCGGTCCTTTT 60.203 52.381 0.00 0.00 0.00 2.27
3284 3418 0.412640 AGTACTCCCTCCGGTCCTTT 59.587 55.000 0.00 0.00 0.00 3.11
3285 3419 0.412640 AAGTACTCCCTCCGGTCCTT 59.587 55.000 0.00 0.00 0.00 3.36
3286 3420 0.324460 CAAGTACTCCCTCCGGTCCT 60.324 60.000 0.00 0.00 0.00 3.85
3287 3421 0.324091 TCAAGTACTCCCTCCGGTCC 60.324 60.000 0.00 0.00 0.00 4.46
3288 3422 1.553706 TTCAAGTACTCCCTCCGGTC 58.446 55.000 0.00 0.00 0.00 4.79
3289 3423 2.019807 TTTCAAGTACTCCCTCCGGT 57.980 50.000 0.00 0.00 0.00 5.28
3290 3424 3.532542 GATTTTCAAGTACTCCCTCCGG 58.467 50.000 0.00 0.00 0.00 5.14
3291 3425 3.197983 AGGATTTTCAAGTACTCCCTCCG 59.802 47.826 0.00 0.00 0.00 4.63
3292 3426 4.518249 CAGGATTTTCAAGTACTCCCTCC 58.482 47.826 0.00 0.00 0.00 4.30
3293 3427 3.942115 GCAGGATTTTCAAGTACTCCCTC 59.058 47.826 0.00 0.00 0.00 4.30
3294 3428 3.330701 TGCAGGATTTTCAAGTACTCCCT 59.669 43.478 0.00 0.00 0.00 4.20
3295 3429 3.686016 TGCAGGATTTTCAAGTACTCCC 58.314 45.455 0.00 0.00 0.00 4.30
3296 3430 3.691609 CCTGCAGGATTTTCAAGTACTCC 59.308 47.826 29.88 0.00 37.39 3.85
3297 3431 4.154918 CACCTGCAGGATTTTCAAGTACTC 59.845 45.833 39.19 0.00 38.94 2.59
3298 3432 4.074970 CACCTGCAGGATTTTCAAGTACT 58.925 43.478 39.19 8.95 38.94 2.73
3299 3433 3.821033 ACACCTGCAGGATTTTCAAGTAC 59.179 43.478 39.19 0.00 38.94 2.73
3300 3434 4.098914 ACACCTGCAGGATTTTCAAGTA 57.901 40.909 39.19 0.00 38.94 2.24
3301 3435 2.949447 ACACCTGCAGGATTTTCAAGT 58.051 42.857 39.19 18.57 38.94 3.16
3302 3436 3.318839 TGAACACCTGCAGGATTTTCAAG 59.681 43.478 39.19 17.98 38.94 3.02
3693 3829 6.031549 TGACGATGAATAATAACGCAACAG 57.968 37.500 0.00 0.00 0.00 3.16
3743 3879 9.189156 CTCCATTCCAACCTAATTTATTCAAGA 57.811 33.333 0.00 0.00 0.00 3.02
3747 3883 8.519799 TGTCTCCATTCCAACCTAATTTATTC 57.480 34.615 0.00 0.00 0.00 1.75
3937 5717 7.333528 TCATTAACAAACTGGCCATTCTATC 57.666 36.000 5.51 0.00 0.00 2.08
3982 5762 7.989416 TCTTTAACATGTTCCGGATAGTTTT 57.011 32.000 15.85 0.00 0.00 2.43
4209 6004 9.071276 AGGCGAAATGATTCTAATACATCAAAT 57.929 29.630 0.00 0.00 33.13 2.32
4947 7848 8.424918 TGACTTAGCAAATGGTTTAAATTCCAA 58.575 29.630 1.97 0.00 37.27 3.53
4993 7894 9.846725 TTACCATACCAGGAACCAGATAATATA 57.153 33.333 0.00 0.00 0.00 0.86
4994 7895 8.751215 TTACCATACCAGGAACCAGATAATAT 57.249 34.615 0.00 0.00 0.00 1.28
5094 8020 2.609737 GCACGACCTACAGTAAGCAACT 60.610 50.000 0.00 0.00 39.81 3.16
5103 8029 1.139989 CTGTTGTGCACGACCTACAG 58.860 55.000 30.04 22.16 32.85 2.74
5251 8177 7.364585 CCTCTCATCACCTTGTCTATTTTCTCT 60.365 40.741 0.00 0.00 0.00 3.10
5591 8552 4.460263 TGTAACACTCCAAACTCATGCTT 58.540 39.130 0.00 0.00 0.00 3.91
5683 8651 1.224069 CTTCGCATGCTACCATCCCG 61.224 60.000 17.13 0.00 0.00 5.14
5694 8662 2.711311 CCCGCACATCTTCGCATG 59.289 61.111 0.00 0.00 0.00 4.06
5695 8663 2.514592 CCCCGCACATCTTCGCAT 60.515 61.111 0.00 0.00 0.00 4.73
5784 8753 3.056536 TGTCAGACATGTACTTCTCCTGC 60.057 47.826 0.00 0.00 0.00 4.85
5918 8887 4.818534 ATGAACGCAAATATAGTGCCTG 57.181 40.909 5.88 0.00 38.86 4.85
5919 8888 5.356751 TGAAATGAACGCAAATATAGTGCCT 59.643 36.000 5.88 0.00 38.86 4.75
6036 9007 2.142357 CTCGGCTCTGACAACGTCCA 62.142 60.000 0.00 0.00 0.00 4.02
6037 9008 1.444553 CTCGGCTCTGACAACGTCC 60.445 63.158 0.00 0.00 0.00 4.79
6038 9009 1.444553 CCTCGGCTCTGACAACGTC 60.445 63.158 0.00 0.00 0.00 4.34
6039 9010 2.651361 CCTCGGCTCTGACAACGT 59.349 61.111 0.00 0.00 0.00 3.99
6040 9011 1.592400 TACCCTCGGCTCTGACAACG 61.592 60.000 0.00 0.00 0.00 4.10
6060 9048 6.554982 AGCTTGTCCATAGTCCATACAATAGA 59.445 38.462 0.00 0.00 30.33 1.98
6069 9057 6.373759 TCTAATCTAGCTTGTCCATAGTCCA 58.626 40.000 0.00 0.00 0.00 4.02
6113 9101 0.946221 CAATCCCGAGAGCATACGCC 60.946 60.000 0.00 0.00 39.83 5.68
6266 9254 6.792250 CGTGTTGATAATATTTTCATCTCGGC 59.208 38.462 21.13 9.77 30.73 5.54
6280 9268 6.595326 AGACACATCATGTTCGTGTTGATAAT 59.405 34.615 15.27 0.00 43.56 1.28
6287 9275 5.499139 AAAAAGACACATCATGTTCGTGT 57.501 34.783 14.43 14.43 43.56 4.49
6309 9297 1.302993 GTGCTCCCCCGCAGTAAAA 60.303 57.895 0.00 0.00 41.21 1.52
6310 9298 2.349755 GTGCTCCCCCGCAGTAAA 59.650 61.111 0.00 0.00 41.21 2.01
6311 9299 4.077184 CGTGCTCCCCCGCAGTAA 62.077 66.667 0.00 0.00 41.21 2.24
6316 9304 4.778143 ATGTTCGTGCTCCCCCGC 62.778 66.667 0.00 0.00 0.00 6.13
6317 9305 2.046314 AATGTTCGTGCTCCCCCG 60.046 61.111 0.00 0.00 0.00 5.73
6318 9306 0.394352 ATCAATGTTCGTGCTCCCCC 60.394 55.000 0.00 0.00 0.00 5.40
6319 9307 0.734889 CATCAATGTTCGTGCTCCCC 59.265 55.000 0.00 0.00 0.00 4.81
6320 9308 1.453155 ACATCAATGTTCGTGCTCCC 58.547 50.000 0.00 0.00 37.90 4.30
6321 9309 3.307242 GTCTACATCAATGTTCGTGCTCC 59.693 47.826 0.20 0.00 41.97 4.70
6322 9310 3.307242 GGTCTACATCAATGTTCGTGCTC 59.693 47.826 0.20 0.00 41.97 4.26
6323 9311 3.262420 GGTCTACATCAATGTTCGTGCT 58.738 45.455 0.20 0.00 41.97 4.40
6324 9312 2.029244 CGGTCTACATCAATGTTCGTGC 59.971 50.000 0.20 0.00 41.97 5.34
6325 9313 3.507786 TCGGTCTACATCAATGTTCGTG 58.492 45.455 0.20 0.00 41.97 4.35
6326 9314 3.861276 TCGGTCTACATCAATGTTCGT 57.139 42.857 0.20 0.00 41.97 3.85
6327 9315 3.306166 GGTTCGGTCTACATCAATGTTCG 59.694 47.826 0.20 2.17 41.97 3.95
6328 9316 4.504858 AGGTTCGGTCTACATCAATGTTC 58.495 43.478 0.20 0.00 41.97 3.18
6329 9317 4.504858 GAGGTTCGGTCTACATCAATGTT 58.495 43.478 0.20 0.00 41.97 2.71
6330 9318 3.428999 CGAGGTTCGGTCTACATCAATGT 60.429 47.826 0.70 0.70 39.34 2.71
6331 9319 3.116300 CGAGGTTCGGTCTACATCAATG 58.884 50.000 0.00 0.00 36.00 2.82
6332 9320 2.758979 ACGAGGTTCGGTCTACATCAAT 59.241 45.455 3.37 0.00 45.59 2.57
6333 9321 2.094906 CACGAGGTTCGGTCTACATCAA 60.095 50.000 3.37 0.00 45.59 2.57
6476 11103 3.653539 TCGTCGAGATTGGTTTTCTCA 57.346 42.857 0.00 0.00 39.69 3.27
6538 12977 5.644206 GGGATCTTTAGAAAACCTCTGTGTC 59.356 44.000 0.00 0.00 35.41 3.67
6661 13103 3.380320 GTGTGTTTCAGGTTGGCTACTTT 59.620 43.478 0.00 0.00 0.00 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.