Multiple sequence alignment - TraesCS4A01G139300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G139300 chr4A 100.000 9229 0 0 1 9229 210161666 210170894 0.000000e+00 17043.0
1 TraesCS4A01G139300 chr4A 89.577 355 34 2 11 363 115909126 115908773 1.830000e-121 448.0
2 TraesCS4A01G139300 chr4A 87.887 355 41 1 11 363 210114758 210115112 5.160000e-112 416.0
3 TraesCS4A01G139300 chr4A 87.535 353 36 2 13 363 115882636 115882290 1.440000e-107 401.0
4 TraesCS4A01G139300 chr4D 96.494 6845 174 31 1720 8546 275761914 275755118 0.000000e+00 11250.0
5 TraesCS4A01G139300 chr4D 91.442 853 29 15 534 1371 275763171 275762348 0.000000e+00 1131.0
6 TraesCS4A01G139300 chr4D 91.121 687 41 11 8545 9229 275755027 275754359 0.000000e+00 913.0
7 TraesCS4A01G139300 chr4D 96.221 344 8 2 1372 1711 275762296 275761954 8.090000e-155 558.0
8 TraesCS4A01G139300 chr4D 85.042 361 52 1 5 363 72531209 72530849 5.270000e-97 366.0
9 TraesCS4A01G139300 chr4D 94.382 89 5 0 2868 2956 134988713 134988801 4.490000e-28 137.0
10 TraesCS4A01G139300 chr4D 80.814 172 20 10 364 530 275763386 275763223 1.260000e-23 122.0
11 TraesCS4A01G139300 chr4D 97.727 44 1 0 5982 6025 64543098 64543055 9.940000e-10 76.8
12 TraesCS4A01G139300 chr4D 95.556 45 2 0 5981 6025 3748049 3748005 1.290000e-08 73.1
13 TraesCS4A01G139300 chr4D 95.556 45 2 0 5981 6025 24455886 24455842 1.290000e-08 73.1
14 TraesCS4A01G139300 chr4D 95.455 44 2 0 5982 6025 295153822 295153779 4.620000e-08 71.3
15 TraesCS4A01G139300 chr4D 93.478 46 3 0 5980 6025 136781501 136781456 1.660000e-07 69.4
16 TraesCS4A01G139300 chr4B 96.128 5630 153 28 1396 6982 273241922 273247529 0.000000e+00 9129.0
17 TraesCS4A01G139300 chr4B 96.251 1627 44 8 6975 8591 273248337 273249956 0.000000e+00 2651.0
18 TraesCS4A01G139300 chr4B 92.701 822 16 8 528 1333 273240772 273241565 0.000000e+00 1146.0
19 TraesCS4A01G139300 chr4B 91.077 650 44 9 8583 9229 273264182 273264820 0.000000e+00 867.0
20 TraesCS4A01G139300 chr4B 97.778 45 1 0 5981 6025 252015141 252015185 2.760000e-10 78.7
21 TraesCS4A01G139300 chr4B 97.778 45 1 0 5981 6025 399441339 399441295 2.760000e-10 78.7
22 TraesCS4A01G139300 chr4B 92.157 51 4 0 5975 6025 18440828 18440878 1.290000e-08 73.1
23 TraesCS4A01G139300 chr4B 97.674 43 0 1 482 523 273240702 273240744 1.290000e-08 73.1
24 TraesCS4A01G139300 chr6A 87.467 375 42 4 5 374 198351556 198351930 2.380000e-115 427.0
25 TraesCS4A01G139300 chr6A 92.308 65 3 1 5982 6046 189545072 189545134 3.550000e-14 91.6
26 TraesCS4A01G139300 chr5D 85.319 361 51 2 5 363 117718545 117718185 1.130000e-98 372.0
27 TraesCS4A01G139300 chr5D 89.855 69 5 2 5979 6046 512302105 512302172 4.590000e-13 87.9
28 TraesCS4A01G139300 chr5D 97.727 44 1 0 5982 6025 342696466 342696423 9.940000e-10 76.8
29 TraesCS4A01G139300 chr5D 93.333 45 3 0 2336 2380 460749697 460749741 5.980000e-07 67.6
30 TraesCS4A01G139300 chr1D 85.042 361 52 1 5 363 486285383 486285023 5.270000e-97 366.0
31 TraesCS4A01G139300 chr1D 84.765 361 53 1 5 363 383917068 383916708 2.450000e-95 361.0
32 TraesCS4A01G139300 chr1D 97.727 44 1 0 5982 6025 484555672 484555715 9.940000e-10 76.8
33 TraesCS4A01G139300 chr1D 95.745 47 1 1 5979 6024 326777924 326777878 3.570000e-09 75.0
34 TraesCS4A01G139300 chr6D 84.973 366 48 5 5 363 439329148 439329513 1.890000e-96 364.0
35 TraesCS4A01G139300 chr6D 94.382 89 5 0 2868 2956 124527679 124527591 4.490000e-28 137.0
36 TraesCS4A01G139300 chr6D 94.382 89 5 0 2868 2956 283216233 283216145 4.490000e-28 137.0
37 TraesCS4A01G139300 chr6D 94.382 89 5 0 2868 2956 369964030 369963942 4.490000e-28 137.0
38 TraesCS4A01G139300 chr6D 93.750 48 3 0 5980 6027 84071918 84071871 1.290000e-08 73.1
39 TraesCS4A01G139300 chrUn 94.382 89 5 0 2868 2956 189402638 189402550 4.490000e-28 137.0
40 TraesCS4A01G139300 chrUn 94.382 89 5 0 2868 2956 251413914 251414002 4.490000e-28 137.0
41 TraesCS4A01G139300 chrUn 94.382 89 5 0 2868 2956 266524341 266524429 4.490000e-28 137.0
42 TraesCS4A01G139300 chrUn 97.619 42 1 0 5981 6022 224653308 224653349 1.290000e-08 73.1
43 TraesCS4A01G139300 chrUn 95.238 42 2 0 5981 6022 41907508 41907467 5.980000e-07 67.6
44 TraesCS4A01G139300 chrUn 95.238 42 2 0 5981 6022 94847057 94847016 5.980000e-07 67.6
45 TraesCS4A01G139300 chrUn 93.182 44 3 0 5979 6022 235338683 235338726 2.150000e-06 65.8
46 TraesCS4A01G139300 chrUn 93.182 44 3 0 5982 6025 241299467 241299424 2.150000e-06 65.8
47 TraesCS4A01G139300 chrUn 93.182 44 3 0 5982 6025 317309701 317309658 2.150000e-06 65.8
48 TraesCS4A01G139300 chrUn 93.182 44 3 0 5982 6025 333415233 333415190 2.150000e-06 65.8
49 TraesCS4A01G139300 chr7B 92.647 68 2 2 5979 6046 53250574 53250638 2.740000e-15 95.3
50 TraesCS4A01G139300 chr1A 92.424 66 4 1 5981 6046 381297342 381297406 9.870000e-15 93.5
51 TraesCS4A01G139300 chr1A 91.045 67 5 1 5981 6046 40230843 40230909 1.280000e-13 89.8
52 TraesCS4A01G139300 chr1A 97.778 45 1 0 5981 6025 48977250 48977206 2.760000e-10 78.7
53 TraesCS4A01G139300 chr1A 97.826 46 0 1 5981 6025 504710446 504710401 2.760000e-10 78.7
54 TraesCS4A01G139300 chr2B 92.424 66 2 1 5981 6046 321689840 321689902 3.550000e-14 91.6
55 TraesCS4A01G139300 chr2D 91.045 67 5 1 5981 6046 49876872 49876806 1.280000e-13 89.8
56 TraesCS4A01G139300 chr7D 96.000 50 2 0 5976 6025 248159812 248159861 2.140000e-11 82.4
57 TraesCS4A01G139300 chr3D 97.727 44 1 0 5982 6025 15450760 15450717 9.940000e-10 76.8
58 TraesCS4A01G139300 chr5A 95.556 45 2 0 2336 2380 580938200 580938244 1.290000e-08 73.1
59 TraesCS4A01G139300 chr5B 93.333 45 3 0 8828 8872 491987530 491987574 5.980000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G139300 chr4A 210161666 210170894 9228 False 17043.000 17043 100.0000 1 9229 1 chr4A.!!$F2 9228
1 TraesCS4A01G139300 chr4D 275754359 275763386 9027 True 2794.800 11250 91.2184 364 9229 5 chr4D.!!$R7 8865
2 TraesCS4A01G139300 chr4B 273240702 273249956 9254 False 3249.775 9129 95.6885 482 8591 4 chr4B.!!$F4 8109
3 TraesCS4A01G139300 chr4B 273264182 273264820 638 False 867.000 867 91.0770 8583 9229 1 chr4B.!!$F3 646

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
100 101 0.179134 CCGACATCGACAACCTCCTC 60.179 60.000 2.09 0.00 43.02 3.71 F
1398 1769 0.104855 TCTCTGTGTGTGTGTGGCTC 59.895 55.000 0.00 0.00 0.00 4.70 F
2349 2762 0.465705 CATGCACTACCTCCGTCCAT 59.534 55.000 0.00 0.00 0.00 3.41 F
2669 3082 0.738063 TACGGTGTGCATACTTGGCG 60.738 55.000 13.64 10.54 0.00 5.69 F
4312 4732 0.879090 CAAGTTGGGACCCGTTAAGC 59.121 55.000 5.91 0.00 0.00 3.09 F
5167 5588 3.767673 TCCGTTTACTAGAGAATGCTGGT 59.232 43.478 0.00 0.00 33.88 4.00 F
6600 7033 1.369692 CCTGAACCGTGTGTAGCCA 59.630 57.895 0.00 0.00 0.00 4.75 F
7396 8650 1.429463 GAAGTCCCACGTAAGCAGTG 58.571 55.000 0.00 0.00 45.62 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1892 2303 0.247736 CTTGAGAAGGGACCGTCAGG 59.752 60.000 7.03 0.0 45.13 3.86 R
2389 2802 1.540267 GTCAGTGGCTCGACAGAACTA 59.460 52.381 0.00 0.0 32.24 2.24 R
4312 4732 1.027357 CCTGGATTCCTCGCCAAATG 58.973 55.000 3.95 0.0 32.95 2.32 R
4363 4783 4.508662 AGCAGTCCACAGCTTTAACTATC 58.491 43.478 0.00 0.0 35.00 2.08 R
5351 5773 0.104120 CATGCACTGCCATCCCATTG 59.896 55.000 0.00 0.0 0.00 2.82 R
6993 8241 0.321564 CCGGTGAGCAATCCACAGAA 60.322 55.000 0.00 0.0 36.31 3.02 R
7843 9097 0.389166 CTCGGTGACCAGCTCAGTTC 60.389 60.000 1.11 0.0 0.00 3.01 R
9033 10386 0.539051 AATTGAGAGAGGGTGCGAGG 59.461 55.000 0.00 0.0 0.00 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.436924 TTCAGCTCCGCGCGACTA 61.437 61.111 34.63 15.46 45.59 2.59
18 19 2.771639 TTCAGCTCCGCGCGACTAT 61.772 57.895 34.63 11.88 45.59 2.12
19 20 2.278857 CAGCTCCGCGCGACTATT 60.279 61.111 34.63 9.82 45.59 1.73
20 21 2.278857 AGCTCCGCGCGACTATTG 60.279 61.111 34.63 13.91 45.59 1.90
21 22 2.278596 GCTCCGCGCGACTATTGA 60.279 61.111 34.63 17.83 0.00 2.57
22 23 2.577785 GCTCCGCGCGACTATTGAC 61.578 63.158 34.63 9.51 0.00 3.18
23 24 1.064296 CTCCGCGCGACTATTGACT 59.936 57.895 34.63 0.00 0.00 3.41
24 25 0.525668 CTCCGCGCGACTATTGACTT 60.526 55.000 34.63 0.00 0.00 3.01
25 26 0.524816 TCCGCGCGACTATTGACTTC 60.525 55.000 34.63 0.00 0.00 3.01
26 27 0.525668 CCGCGCGACTATTGACTTCT 60.526 55.000 34.63 0.00 0.00 2.85
27 28 1.269166 CGCGCGACTATTGACTTCTT 58.731 50.000 28.94 0.00 0.00 2.52
28 29 1.253034 CGCGCGACTATTGACTTCTTC 59.747 52.381 28.94 0.00 0.00 2.87
29 30 1.253034 GCGCGACTATTGACTTCTTCG 59.747 52.381 12.10 0.00 0.00 3.79
30 31 2.516923 CGCGACTATTGACTTCTTCGT 58.483 47.619 0.00 0.00 0.00 3.85
31 32 2.526688 CGCGACTATTGACTTCTTCGTC 59.473 50.000 0.00 0.00 34.52 4.20
32 33 3.499048 GCGACTATTGACTTCTTCGTCA 58.501 45.455 0.00 0.00 41.82 4.35
33 34 3.301116 GCGACTATTGACTTCTTCGTCAC 59.699 47.826 0.00 0.00 43.11 3.67
34 35 3.538782 CGACTATTGACTTCTTCGTCACG 59.461 47.826 0.00 0.00 43.11 4.35
35 36 3.834610 ACTATTGACTTCTTCGTCACGG 58.165 45.455 0.00 0.00 43.11 4.94
36 37 3.504906 ACTATTGACTTCTTCGTCACGGA 59.495 43.478 0.00 0.00 43.11 4.69
37 38 2.875087 TTGACTTCTTCGTCACGGAA 57.125 45.000 0.00 0.00 43.11 4.30
38 39 2.417339 TGACTTCTTCGTCACGGAAG 57.583 50.000 12.93 12.93 43.78 3.46
39 40 1.000607 TGACTTCTTCGTCACGGAAGG 60.001 52.381 17.24 3.72 42.88 3.46
40 41 0.319641 ACTTCTTCGTCACGGAAGGC 60.320 55.000 17.24 0.00 42.88 4.35
41 42 1.005394 TTCTTCGTCACGGAAGGCC 60.005 57.895 0.00 0.00 42.88 5.19
42 43 2.434359 CTTCGTCACGGAAGGCCC 60.434 66.667 0.00 0.00 39.76 5.80
51 52 3.327404 GGAAGGCCCGGACTCCAA 61.327 66.667 0.73 0.00 0.00 3.53
52 53 2.046217 GAAGGCCCGGACTCCAAC 60.046 66.667 0.73 0.00 0.00 3.77
53 54 3.952628 GAAGGCCCGGACTCCAACG 62.953 68.421 0.73 0.00 0.00 4.10
55 56 4.754667 GGCCCGGACTCCAACGAC 62.755 72.222 0.73 0.00 0.00 4.34
56 57 3.692406 GCCCGGACTCCAACGACT 61.692 66.667 0.73 0.00 0.00 4.18
57 58 2.345760 GCCCGGACTCCAACGACTA 61.346 63.158 0.73 0.00 0.00 2.59
58 59 1.509923 CCCGGACTCCAACGACTAC 59.490 63.158 0.73 0.00 0.00 2.73
59 60 0.964358 CCCGGACTCCAACGACTACT 60.964 60.000 0.73 0.00 0.00 2.57
60 61 0.886563 CCGGACTCCAACGACTACTT 59.113 55.000 0.00 0.00 0.00 2.24
61 62 2.086869 CCGGACTCCAACGACTACTTA 58.913 52.381 0.00 0.00 0.00 2.24
62 63 2.686915 CCGGACTCCAACGACTACTTAT 59.313 50.000 0.00 0.00 0.00 1.73
63 64 3.243002 CCGGACTCCAACGACTACTTATC 60.243 52.174 0.00 0.00 0.00 1.75
64 65 3.243002 CGGACTCCAACGACTACTTATCC 60.243 52.174 0.00 0.00 0.00 2.59
65 66 3.243002 GGACTCCAACGACTACTTATCCG 60.243 52.174 0.00 0.00 0.00 4.18
66 67 3.614092 ACTCCAACGACTACTTATCCGA 58.386 45.455 0.00 0.00 0.00 4.55
67 68 3.376546 ACTCCAACGACTACTTATCCGAC 59.623 47.826 0.00 0.00 0.00 4.79
68 69 2.352651 TCCAACGACTACTTATCCGACG 59.647 50.000 0.00 0.00 0.00 5.12
69 70 2.352651 CCAACGACTACTTATCCGACGA 59.647 50.000 0.00 0.00 0.00 4.20
70 71 3.349176 CAACGACTACTTATCCGACGAC 58.651 50.000 0.00 0.00 0.00 4.34
71 72 1.590238 ACGACTACTTATCCGACGACG 59.410 52.381 0.00 0.00 39.43 5.12
72 73 1.854743 CGACTACTTATCCGACGACGA 59.145 52.381 9.28 0.00 42.66 4.20
73 74 2.347108 CGACTACTTATCCGACGACGAC 60.347 54.545 9.28 0.00 42.66 4.34
74 75 2.863137 GACTACTTATCCGACGACGACT 59.137 50.000 9.28 0.00 42.66 4.18
75 76 3.265791 ACTACTTATCCGACGACGACTT 58.734 45.455 9.28 0.00 42.66 3.01
76 77 3.686726 ACTACTTATCCGACGACGACTTT 59.313 43.478 9.28 0.00 42.66 2.66
77 78 3.565905 ACTTATCCGACGACGACTTTT 57.434 42.857 9.28 0.00 42.66 2.27
78 79 3.905784 ACTTATCCGACGACGACTTTTT 58.094 40.909 9.28 0.00 42.66 1.94
79 80 3.916776 ACTTATCCGACGACGACTTTTTC 59.083 43.478 9.28 0.00 42.66 2.29
80 81 1.706443 ATCCGACGACGACTTTTTCC 58.294 50.000 9.28 0.00 42.66 3.13
81 82 0.318955 TCCGACGACGACTTTTTCCC 60.319 55.000 9.28 0.00 42.66 3.97
82 83 1.287041 CCGACGACGACTTTTTCCCC 61.287 60.000 9.28 0.00 42.66 4.81
83 84 1.611592 CGACGACGACTTTTTCCCCG 61.612 60.000 0.00 0.00 42.66 5.73
84 85 0.318955 GACGACGACTTTTTCCCCGA 60.319 55.000 0.00 0.00 0.00 5.14
85 86 0.598419 ACGACGACTTTTTCCCCGAC 60.598 55.000 0.00 0.00 0.00 4.79
86 87 0.598158 CGACGACTTTTTCCCCGACA 60.598 55.000 0.00 0.00 0.00 4.35
87 88 1.804601 GACGACTTTTTCCCCGACAT 58.195 50.000 0.00 0.00 0.00 3.06
88 89 1.730612 GACGACTTTTTCCCCGACATC 59.269 52.381 0.00 0.00 0.00 3.06
89 90 0.719465 CGACTTTTTCCCCGACATCG 59.281 55.000 0.00 0.00 39.44 3.84
90 91 1.670674 CGACTTTTTCCCCGACATCGA 60.671 52.381 2.09 0.00 43.02 3.59
91 92 1.730612 GACTTTTTCCCCGACATCGAC 59.269 52.381 2.09 0.00 43.02 4.20
92 93 1.071071 ACTTTTTCCCCGACATCGACA 59.929 47.619 2.09 0.00 43.02 4.35
93 94 2.147958 CTTTTTCCCCGACATCGACAA 58.852 47.619 2.09 0.00 43.02 3.18
94 95 1.515081 TTTTCCCCGACATCGACAAC 58.485 50.000 2.09 0.00 43.02 3.32
95 96 0.320946 TTTCCCCGACATCGACAACC 60.321 55.000 2.09 0.00 43.02 3.77
96 97 1.189524 TTCCCCGACATCGACAACCT 61.190 55.000 2.09 0.00 43.02 3.50
97 98 1.153628 CCCCGACATCGACAACCTC 60.154 63.158 2.09 0.00 43.02 3.85
98 99 1.153628 CCCGACATCGACAACCTCC 60.154 63.158 2.09 0.00 43.02 4.30
99 100 1.605058 CCCGACATCGACAACCTCCT 61.605 60.000 2.09 0.00 43.02 3.69
100 101 0.179134 CCGACATCGACAACCTCCTC 60.179 60.000 2.09 0.00 43.02 3.71
101 102 0.523546 CGACATCGACAACCTCCTCG 60.524 60.000 0.00 0.00 43.02 4.63
102 103 0.809385 GACATCGACAACCTCCTCGA 59.191 55.000 0.00 0.00 42.79 4.04
103 104 0.526662 ACATCGACAACCTCCTCGAC 59.473 55.000 0.00 0.00 41.50 4.20
104 105 0.523546 CATCGACAACCTCCTCGACG 60.524 60.000 0.00 0.00 41.50 5.12
105 106 0.675837 ATCGACAACCTCCTCGACGA 60.676 55.000 0.00 0.00 41.50 4.20
106 107 1.154263 CGACAACCTCCTCGACGAC 60.154 63.158 0.00 0.00 31.24 4.34
107 108 1.848932 CGACAACCTCCTCGACGACA 61.849 60.000 0.00 0.00 31.24 4.35
108 109 0.526662 GACAACCTCCTCGACGACAT 59.473 55.000 0.00 0.00 0.00 3.06
109 110 0.243907 ACAACCTCCTCGACGACATG 59.756 55.000 0.00 0.00 0.00 3.21
110 111 0.458543 CAACCTCCTCGACGACATGG 60.459 60.000 0.00 0.00 0.00 3.66
111 112 2.105128 CCTCCTCGACGACATGGC 59.895 66.667 0.00 0.00 0.00 4.40
112 113 2.418910 CCTCCTCGACGACATGGCT 61.419 63.158 0.00 0.00 0.00 4.75
113 114 1.226802 CTCCTCGACGACATGGCTG 60.227 63.158 0.00 0.00 0.00 4.85
114 115 2.202797 CCTCGACGACATGGCTGG 60.203 66.667 0.00 0.00 0.00 4.85
115 116 2.887568 CTCGACGACATGGCTGGC 60.888 66.667 0.00 0.00 0.00 4.85
121 122 2.512515 GACATGGCTGGCGAGGAC 60.513 66.667 0.00 0.00 0.00 3.85
122 123 3.315142 GACATGGCTGGCGAGGACA 62.315 63.158 0.00 0.00 0.00 4.02
123 124 2.821366 CATGGCTGGCGAGGACAC 60.821 66.667 0.00 0.00 0.00 3.67
124 125 3.005539 ATGGCTGGCGAGGACACT 61.006 61.111 0.00 0.00 0.00 3.55
125 126 1.685765 ATGGCTGGCGAGGACACTA 60.686 57.895 0.00 0.00 0.00 2.74
126 127 1.264749 ATGGCTGGCGAGGACACTAA 61.265 55.000 0.00 0.00 0.00 2.24
127 128 1.448013 GGCTGGCGAGGACACTAAC 60.448 63.158 0.00 0.00 0.00 2.34
128 129 1.448013 GCTGGCGAGGACACTAACC 60.448 63.158 0.00 0.00 0.00 2.85
129 130 1.218316 CTGGCGAGGACACTAACCC 59.782 63.158 0.00 0.00 0.00 4.11
130 131 2.240162 CTGGCGAGGACACTAACCCC 62.240 65.000 0.00 0.00 0.00 4.95
131 132 2.288025 GGCGAGGACACTAACCCCA 61.288 63.158 0.00 0.00 0.00 4.96
132 133 1.675219 GCGAGGACACTAACCCCAA 59.325 57.895 0.00 0.00 0.00 4.12
133 134 0.391263 GCGAGGACACTAACCCCAAG 60.391 60.000 0.00 0.00 0.00 3.61
134 135 1.263356 CGAGGACACTAACCCCAAGA 58.737 55.000 0.00 0.00 0.00 3.02
135 136 1.067071 CGAGGACACTAACCCCAAGAC 60.067 57.143 0.00 0.00 0.00 3.01
136 137 1.278413 GAGGACACTAACCCCAAGACC 59.722 57.143 0.00 0.00 0.00 3.85
137 138 1.061546 GGACACTAACCCCAAGACCA 58.938 55.000 0.00 0.00 0.00 4.02
138 139 1.003233 GGACACTAACCCCAAGACCAG 59.997 57.143 0.00 0.00 0.00 4.00
139 140 1.697982 GACACTAACCCCAAGACCAGT 59.302 52.381 0.00 0.00 0.00 4.00
140 141 2.901839 GACACTAACCCCAAGACCAGTA 59.098 50.000 0.00 0.00 0.00 2.74
141 142 2.636403 ACACTAACCCCAAGACCAGTAC 59.364 50.000 0.00 0.00 0.00 2.73
142 143 2.904434 CACTAACCCCAAGACCAGTACT 59.096 50.000 0.00 0.00 0.00 2.73
143 144 3.326880 CACTAACCCCAAGACCAGTACTT 59.673 47.826 0.00 0.00 0.00 2.24
144 145 3.581770 ACTAACCCCAAGACCAGTACTTC 59.418 47.826 0.00 0.00 0.00 3.01
145 146 1.359168 ACCCCAAGACCAGTACTTCC 58.641 55.000 0.00 0.00 0.00 3.46
146 147 0.249398 CCCCAAGACCAGTACTTCCG 59.751 60.000 0.00 0.00 0.00 4.30
147 148 0.391263 CCCAAGACCAGTACTTCCGC 60.391 60.000 0.00 0.00 0.00 5.54
148 149 0.608640 CCAAGACCAGTACTTCCGCT 59.391 55.000 0.00 0.00 0.00 5.52
149 150 1.673033 CCAAGACCAGTACTTCCGCTG 60.673 57.143 0.00 0.00 0.00 5.18
150 151 1.000955 CAAGACCAGTACTTCCGCTGT 59.999 52.381 0.00 0.00 0.00 4.40
151 152 1.339097 AGACCAGTACTTCCGCTGTT 58.661 50.000 0.00 0.00 0.00 3.16
152 153 1.000955 AGACCAGTACTTCCGCTGTTG 59.999 52.381 0.00 0.00 0.00 3.33
153 154 0.756903 ACCAGTACTTCCGCTGTTGT 59.243 50.000 0.00 0.00 0.00 3.32
154 155 1.965643 ACCAGTACTTCCGCTGTTGTA 59.034 47.619 0.00 0.00 0.00 2.41
155 156 2.288640 ACCAGTACTTCCGCTGTTGTAC 60.289 50.000 0.00 0.00 36.48 2.90
156 157 2.334838 CAGTACTTCCGCTGTTGTACC 58.665 52.381 0.00 0.00 36.79 3.34
157 158 1.965643 AGTACTTCCGCTGTTGTACCA 59.034 47.619 0.00 0.00 36.79 3.25
158 159 2.565834 AGTACTTCCGCTGTTGTACCAT 59.434 45.455 0.00 0.00 36.79 3.55
159 160 3.765511 AGTACTTCCGCTGTTGTACCATA 59.234 43.478 0.00 0.00 36.79 2.74
160 161 2.968675 ACTTCCGCTGTTGTACCATAC 58.031 47.619 0.00 0.00 0.00 2.39
161 162 2.300723 ACTTCCGCTGTTGTACCATACA 59.699 45.455 0.00 0.00 36.79 2.29
162 163 3.055385 ACTTCCGCTGTTGTACCATACAT 60.055 43.478 0.00 0.00 38.68 2.29
163 164 2.899976 TCCGCTGTTGTACCATACATG 58.100 47.619 0.00 0.00 38.68 3.21
164 165 2.235155 TCCGCTGTTGTACCATACATGT 59.765 45.455 2.69 2.69 38.68 3.21
165 166 3.006940 CCGCTGTTGTACCATACATGTT 58.993 45.455 2.30 0.00 38.68 2.71
166 167 3.063452 CCGCTGTTGTACCATACATGTTC 59.937 47.826 2.30 0.00 38.68 3.18
167 168 3.682377 CGCTGTTGTACCATACATGTTCA 59.318 43.478 2.30 0.00 38.68 3.18
168 169 4.332543 CGCTGTTGTACCATACATGTTCAT 59.667 41.667 2.30 0.00 38.68 2.57
169 170 5.522097 CGCTGTTGTACCATACATGTTCATA 59.478 40.000 2.30 0.00 38.68 2.15
170 171 6.509517 CGCTGTTGTACCATACATGTTCATAC 60.510 42.308 2.30 3.13 38.68 2.39
171 172 6.538742 GCTGTTGTACCATACATGTTCATACT 59.461 38.462 2.30 0.00 38.68 2.12
172 173 7.065803 GCTGTTGTACCATACATGTTCATACTT 59.934 37.037 2.30 0.00 38.68 2.24
173 174 8.856153 TGTTGTACCATACATGTTCATACTTT 57.144 30.769 2.30 0.00 38.68 2.66
174 175 9.290988 TGTTGTACCATACATGTTCATACTTTT 57.709 29.630 2.30 0.00 38.68 2.27
177 178 9.733556 TGTACCATACATGTTCATACTTTTTCT 57.266 29.630 2.30 0.00 32.89 2.52
178 179 9.988350 GTACCATACATGTTCATACTTTTTCTG 57.012 33.333 2.30 0.00 0.00 3.02
179 180 8.635765 ACCATACATGTTCATACTTTTTCTGT 57.364 30.769 2.30 0.00 0.00 3.41
180 181 9.077885 ACCATACATGTTCATACTTTTTCTGTT 57.922 29.630 2.30 0.00 0.00 3.16
181 182 9.912634 CCATACATGTTCATACTTTTTCTGTTT 57.087 29.630 2.30 0.00 0.00 2.83
185 186 8.902806 ACATGTTCATACTTTTTCTGTTTGAGA 58.097 29.630 0.00 0.00 29.90 3.27
186 187 9.903682 CATGTTCATACTTTTTCTGTTTGAGAT 57.096 29.630 0.00 0.00 29.90 2.75
188 189 9.950680 TGTTCATACTTTTTCTGTTTGAGATTC 57.049 29.630 0.00 0.00 29.90 2.52
191 192 8.292448 TCATACTTTTTCTGTTTGAGATTCTGC 58.708 33.333 0.00 0.00 0.00 4.26
192 193 5.836347 ACTTTTTCTGTTTGAGATTCTGCC 58.164 37.500 0.00 0.00 0.00 4.85
193 194 5.360714 ACTTTTTCTGTTTGAGATTCTGCCA 59.639 36.000 0.00 0.00 0.00 4.92
194 195 4.836125 TTTCTGTTTGAGATTCTGCCAC 57.164 40.909 0.00 0.00 0.00 5.01
195 196 3.490439 TCTGTTTGAGATTCTGCCACA 57.510 42.857 0.00 0.00 0.00 4.17
196 197 3.405831 TCTGTTTGAGATTCTGCCACAG 58.594 45.455 0.00 0.49 33.00 3.66
197 198 3.144506 CTGTTTGAGATTCTGCCACAGT 58.855 45.455 0.00 0.00 32.61 3.55
198 199 3.554934 TGTTTGAGATTCTGCCACAGTT 58.445 40.909 0.00 0.00 32.61 3.16
199 200 3.953612 TGTTTGAGATTCTGCCACAGTTT 59.046 39.130 0.00 0.00 32.61 2.66
200 201 4.036734 TGTTTGAGATTCTGCCACAGTTTC 59.963 41.667 0.00 0.00 32.61 2.78
201 202 3.777106 TGAGATTCTGCCACAGTTTCT 57.223 42.857 0.00 0.00 32.61 2.52
202 203 4.090761 TGAGATTCTGCCACAGTTTCTT 57.909 40.909 0.00 0.00 32.61 2.52
203 204 3.817084 TGAGATTCTGCCACAGTTTCTTG 59.183 43.478 0.00 0.00 32.61 3.02
204 205 2.555757 AGATTCTGCCACAGTTTCTTGC 59.444 45.455 0.00 0.00 32.61 4.01
205 206 2.057137 TTCTGCCACAGTTTCTTGCT 57.943 45.000 0.00 0.00 32.61 3.91
206 207 2.057137 TCTGCCACAGTTTCTTGCTT 57.943 45.000 0.00 0.00 32.61 3.91
207 208 2.378038 TCTGCCACAGTTTCTTGCTTT 58.622 42.857 0.00 0.00 32.61 3.51
208 209 3.550820 TCTGCCACAGTTTCTTGCTTTA 58.449 40.909 0.00 0.00 32.61 1.85
209 210 3.565482 TCTGCCACAGTTTCTTGCTTTAG 59.435 43.478 0.00 0.00 32.61 1.85
210 211 3.287222 TGCCACAGTTTCTTGCTTTAGT 58.713 40.909 0.00 0.00 0.00 2.24
211 212 3.066621 TGCCACAGTTTCTTGCTTTAGTG 59.933 43.478 0.00 0.00 0.00 2.74
212 213 3.066760 GCCACAGTTTCTTGCTTTAGTGT 59.933 43.478 0.00 0.00 0.00 3.55
213 214 4.274950 GCCACAGTTTCTTGCTTTAGTGTA 59.725 41.667 0.00 0.00 0.00 2.90
214 215 5.048713 GCCACAGTTTCTTGCTTTAGTGTAT 60.049 40.000 0.00 0.00 0.00 2.29
215 216 6.373779 CCACAGTTTCTTGCTTTAGTGTATG 58.626 40.000 0.00 0.00 0.00 2.39
216 217 5.853282 CACAGTTTCTTGCTTTAGTGTATGC 59.147 40.000 0.00 0.00 0.00 3.14
217 218 5.765182 ACAGTTTCTTGCTTTAGTGTATGCT 59.235 36.000 0.00 0.00 0.00 3.79
218 219 6.073003 ACAGTTTCTTGCTTTAGTGTATGCTC 60.073 38.462 0.00 0.00 0.00 4.26
219 220 6.148480 CAGTTTCTTGCTTTAGTGTATGCTCT 59.852 38.462 0.00 0.00 0.00 4.09
220 221 7.331934 CAGTTTCTTGCTTTAGTGTATGCTCTA 59.668 37.037 0.00 0.00 0.00 2.43
221 222 7.547370 AGTTTCTTGCTTTAGTGTATGCTCTAG 59.453 37.037 0.00 0.00 0.00 2.43
222 223 6.775594 TCTTGCTTTAGTGTATGCTCTAGA 57.224 37.500 0.00 0.00 0.00 2.43
223 224 7.353414 TCTTGCTTTAGTGTATGCTCTAGAT 57.647 36.000 0.00 0.00 0.00 1.98
224 225 8.465273 TCTTGCTTTAGTGTATGCTCTAGATA 57.535 34.615 0.00 0.00 0.00 1.98
225 226 9.083422 TCTTGCTTTAGTGTATGCTCTAGATAT 57.917 33.333 0.00 0.00 0.00 1.63
251 252 7.994425 TTTGGTTCTAGTTCATATTTGCAGA 57.006 32.000 0.00 0.00 0.00 4.26
252 253 8.579850 TTTGGTTCTAGTTCATATTTGCAGAT 57.420 30.769 0.00 0.00 0.00 2.90
253 254 9.679661 TTTGGTTCTAGTTCATATTTGCAGATA 57.320 29.630 0.00 0.00 0.00 1.98
254 255 8.662781 TGGTTCTAGTTCATATTTGCAGATAC 57.337 34.615 0.00 0.00 0.00 2.24
255 256 8.486210 TGGTTCTAGTTCATATTTGCAGATACT 58.514 33.333 0.00 0.00 0.00 2.12
256 257 9.982651 GGTTCTAGTTCATATTTGCAGATACTA 57.017 33.333 0.00 0.00 0.00 1.82
271 272 9.809096 TTGCAGATACTATTTACTTTCTCTCTG 57.191 33.333 0.00 0.00 0.00 3.35
272 273 8.972127 TGCAGATACTATTTACTTTCTCTCTGT 58.028 33.333 0.00 0.00 31.38 3.41
273 274 9.458374 GCAGATACTATTTACTTTCTCTCTGTC 57.542 37.037 0.00 0.00 31.38 3.51
279 280 9.868277 ACTATTTACTTTCTCTCTGTCAGATTG 57.132 33.333 2.22 0.00 0.00 2.67
280 281 7.608308 ATTTACTTTCTCTCTGTCAGATTGC 57.392 36.000 2.22 0.00 0.00 3.56
281 282 4.613925 ACTTTCTCTCTGTCAGATTGCA 57.386 40.909 2.22 0.00 0.00 4.08
282 283 5.163281 ACTTTCTCTCTGTCAGATTGCAT 57.837 39.130 2.22 0.00 0.00 3.96
283 284 4.936411 ACTTTCTCTCTGTCAGATTGCATG 59.064 41.667 2.22 0.00 0.00 4.06
284 285 2.902523 TCTCTCTGTCAGATTGCATGC 58.097 47.619 11.82 11.82 0.00 4.06
285 286 1.941294 CTCTCTGTCAGATTGCATGCC 59.059 52.381 16.68 0.00 0.00 4.40
286 287 1.558294 TCTCTGTCAGATTGCATGCCT 59.442 47.619 16.68 1.54 0.00 4.75
287 288 2.026542 TCTCTGTCAGATTGCATGCCTT 60.027 45.455 16.68 1.48 0.00 4.35
288 289 2.089201 TCTGTCAGATTGCATGCCTTG 58.911 47.619 16.68 8.27 0.00 3.61
300 301 1.065701 CATGCCTTGCTTGATCTCTGC 59.934 52.381 0.00 0.00 36.06 4.26
301 302 0.327259 TGCCTTGCTTGATCTCTGCT 59.673 50.000 0.00 0.00 0.00 4.24
302 303 1.556451 TGCCTTGCTTGATCTCTGCTA 59.444 47.619 0.00 0.00 0.00 3.49
303 304 2.172082 TGCCTTGCTTGATCTCTGCTAT 59.828 45.455 0.00 0.00 0.00 2.97
304 305 3.212685 GCCTTGCTTGATCTCTGCTATT 58.787 45.455 0.00 0.00 0.00 1.73
305 306 3.631227 GCCTTGCTTGATCTCTGCTATTT 59.369 43.478 0.00 0.00 0.00 1.40
306 307 4.097589 GCCTTGCTTGATCTCTGCTATTTT 59.902 41.667 0.00 0.00 0.00 1.82
307 308 5.297776 GCCTTGCTTGATCTCTGCTATTTTA 59.702 40.000 0.00 0.00 0.00 1.52
308 309 6.513066 GCCTTGCTTGATCTCTGCTATTTTAG 60.513 42.308 0.00 0.00 0.00 1.85
324 325 8.329203 GCTATTTTAGCCATGCTTTATCTAGT 57.671 34.615 0.00 0.00 45.95 2.57
325 326 9.436957 GCTATTTTAGCCATGCTTTATCTAGTA 57.563 33.333 0.00 0.00 45.95 1.82
331 332 7.976135 AGCCATGCTTTATCTAGTATTTCTG 57.024 36.000 0.00 0.00 33.89 3.02
332 333 7.512992 AGCCATGCTTTATCTAGTATTTCTGT 58.487 34.615 0.00 0.00 33.89 3.41
333 334 7.995488 AGCCATGCTTTATCTAGTATTTCTGTT 59.005 33.333 0.00 0.00 33.89 3.16
334 335 9.273016 GCCATGCTTTATCTAGTATTTCTGTTA 57.727 33.333 0.00 0.00 0.00 2.41
393 394 6.734137 ACATGTCAACACACGAATACAAAAT 58.266 32.000 0.00 0.00 34.48 1.82
396 397 6.556212 TGTCAACACACGAATACAAAATTGT 58.444 32.000 4.01 4.01 44.86 2.71
400 401 6.804534 ACACACGAATACAAAATTGTGTTG 57.195 33.333 6.57 1.15 43.83 3.33
413 414 7.772757 ACAAAATTGTGTTGGATGGTAAAACAT 59.227 29.630 0.00 0.00 40.49 2.71
423 424 3.704800 TGGTAAAACATGTCCGGATCA 57.295 42.857 7.81 8.44 0.00 2.92
424 425 3.340034 TGGTAAAACATGTCCGGATCAC 58.660 45.455 7.81 0.00 0.00 3.06
448 449 2.306847 GACATAATGGGGCGGTTTGAT 58.693 47.619 0.00 0.00 0.00 2.57
453 454 3.068064 GGGGCGGTTTGATGGTGG 61.068 66.667 0.00 0.00 0.00 4.61
457 458 1.139520 GCGGTTTGATGGTGGATGC 59.860 57.895 0.00 0.00 0.00 3.91
458 459 1.594194 GCGGTTTGATGGTGGATGCA 61.594 55.000 0.00 0.00 0.00 3.96
459 460 1.105457 CGGTTTGATGGTGGATGCAT 58.895 50.000 0.00 0.00 0.00 3.96
460 461 1.066002 CGGTTTGATGGTGGATGCATC 59.934 52.381 18.81 18.81 0.00 3.91
469 470 3.211963 GGATGCATCCGGTGTGGC 61.212 66.667 29.34 4.77 37.19 5.01
470 471 3.211963 GATGCATCCGGTGTGGCC 61.212 66.667 16.23 0.00 37.80 5.36
472 473 4.720902 TGCATCCGGTGTGGCCAG 62.721 66.667 5.11 0.00 37.80 4.85
523 550 1.198094 TTCCTCCGCCCACATGAAGA 61.198 55.000 0.00 0.00 0.00 2.87
524 551 0.982852 TCCTCCGCCCACATGAAGAT 60.983 55.000 0.00 0.00 0.00 2.40
525 552 0.816825 CCTCCGCCCACATGAAGATG 60.817 60.000 0.00 0.00 35.49 2.90
571 621 3.318191 CCCCCTGCAAGAGGAGAG 58.682 66.667 0.00 0.00 46.33 3.20
734 789 1.002087 GAGTTACTCCACCACCACCAG 59.998 57.143 0.00 0.00 0.00 4.00
902 973 2.855880 TTATACGCCACCGCCACCAC 62.856 60.000 0.00 0.00 38.22 4.16
1340 1417 1.010935 ATCAATGCTATCGGCTCGCG 61.011 55.000 0.00 0.00 42.39 5.87
1380 1508 4.396790 TGGTTTTACCTCTTTGTGTGTGTC 59.603 41.667 0.00 0.00 39.58 3.67
1382 1510 5.220796 GGTTTTACCTCTTTGTGTGTGTCTC 60.221 44.000 0.00 0.00 34.73 3.36
1398 1769 0.104855 TCTCTGTGTGTGTGTGGCTC 59.895 55.000 0.00 0.00 0.00 4.70
1417 1788 4.047059 CGCTGCTTTGGGGTGCTG 62.047 66.667 0.00 0.00 0.00 4.41
1418 1789 2.598394 GCTGCTTTGGGGTGCTGA 60.598 61.111 0.00 0.00 0.00 4.26
1419 1790 1.980772 GCTGCTTTGGGGTGCTGAT 60.981 57.895 0.00 0.00 0.00 2.90
1437 1811 4.432712 CTGATGTTGGTGATACATGTCGA 58.567 43.478 0.00 0.00 36.41 4.20
1711 2089 4.018050 AGGAACTGCCAAATCATAGGAACT 60.018 41.667 0.00 0.00 39.96 3.01
1712 2090 5.191722 AGGAACTGCCAAATCATAGGAACTA 59.808 40.000 0.00 0.00 42.37 2.24
1713 2091 5.297029 GGAACTGCCAAATCATAGGAACTAC 59.703 44.000 0.00 0.00 39.57 2.73
1715 2093 8.591799 GGAACTGCCAAATCATAGGAACTACTC 61.592 44.444 0.00 0.00 39.57 2.59
1726 2135 3.310193 AGGAACTACTCTAGGGCATTCC 58.690 50.000 10.77 10.77 36.02 3.01
1809 2218 0.879400 CAGAAGCATAGCCTCTGCCG 60.879 60.000 4.84 0.00 39.70 5.69
1878 2287 9.319143 CAATAAAAAGTTAATGTTCCACAACCA 57.681 29.630 0.00 0.00 0.00 3.67
1918 2330 2.224305 CGGTCCCTTCTCAAGAACAAGT 60.224 50.000 0.00 0.00 0.00 3.16
2002 2414 9.180678 CAAAATATCAAGTACAAACACACCTTC 57.819 33.333 0.00 0.00 0.00 3.46
2035 2447 3.331889 ACCAATTTGATGGAGAGACACCT 59.668 43.478 0.00 0.00 43.54 4.00
2131 2543 2.533266 ATGAGAAACAGTCAGTGCGT 57.467 45.000 0.00 0.00 0.00 5.24
2147 2559 1.855213 GCGTGAAGTGGAGCATGCAA 61.855 55.000 21.98 1.49 39.09 4.08
2334 2746 5.861787 GTGTTGGGTCTTAACAATAACATGC 59.138 40.000 0.00 0.00 39.50 4.06
2349 2762 0.465705 CATGCACTACCTCCGTCCAT 59.534 55.000 0.00 0.00 0.00 3.41
2389 2802 7.557719 CCTCATATTTTGGGTCACAGTAGAAAT 59.442 37.037 0.00 0.00 0.00 2.17
2466 2879 7.052248 AGTGATCATATGAAAATGAGAGTGCA 58.948 34.615 9.99 0.00 39.18 4.57
2575 2988 3.068024 GGACTGTTGCATTGTCAAGGAAA 59.932 43.478 0.42 0.00 32.84 3.13
2637 3050 6.307800 GCATGTTAGAAATTTGCGTATGTTGT 59.692 34.615 0.00 0.00 0.00 3.32
2669 3082 0.738063 TACGGTGTGCATACTTGGCG 60.738 55.000 13.64 10.54 0.00 5.69
2830 3243 3.560068 AGTTTGCTTACAAGGAGACAACG 59.440 43.478 6.87 0.00 37.04 4.10
2878 3291 2.435805 GTTGATGGCAGGGTATCTGAGA 59.564 50.000 0.00 0.00 46.18 3.27
2888 3301 5.463724 GCAGGGTATCTGAGAAATTCTTACG 59.536 44.000 0.00 0.00 46.18 3.18
2904 3317 7.924103 ATTCTTACGGTTGCTTTTACAAAAG 57.076 32.000 9.59 9.59 46.25 2.27
3064 3484 1.242076 GATCACTATGCCCCACATGC 58.758 55.000 0.00 0.00 40.06 4.06
3119 3539 4.274012 TGGCATGCCACAAGTTGT 57.726 50.000 35.59 1.64 41.89 3.32
3141 3561 9.016623 GTTGTTTAACTTAGGTGTTTCAACATC 57.983 33.333 0.00 0.00 36.23 3.06
3423 3843 4.227527 CCCTCTTACCCTCCTTTGTGTAAT 59.772 45.833 0.00 0.00 0.00 1.89
3424 3844 5.427481 CCCTCTTACCCTCCTTTGTGTAATA 59.573 44.000 0.00 0.00 0.00 0.98
3425 3845 6.069847 CCCTCTTACCCTCCTTTGTGTAATAA 60.070 42.308 0.00 0.00 0.00 1.40
4312 4732 0.879090 CAAGTTGGGACCCGTTAAGC 59.121 55.000 5.91 0.00 0.00 3.09
4417 4837 6.461110 TCAGAGGTAAAACGGGAGTATTAG 57.539 41.667 0.00 0.00 46.69 1.73
4484 4904 6.892310 TGAAATGATCTTATCACTGTGACG 57.108 37.500 13.50 5.03 43.01 4.35
4604 5024 9.606631 AGAGATGTAGGTGATGAAAATTACTTC 57.393 33.333 0.00 0.00 0.00 3.01
4614 5034 9.103048 GTGATGAAAATTACTTCTGTTTGTACG 57.897 33.333 0.00 0.00 0.00 3.67
4726 5146 9.857957 GTGTACTATGGCTATCCTAAAATCTAC 57.142 37.037 0.00 0.00 0.00 2.59
4740 5160 7.609918 TCCTAAAATCTACATGCTGCTTTACAA 59.390 33.333 0.00 0.00 0.00 2.41
4824 5244 5.198602 AGGGAGAAGATGGCAAGTTAATT 57.801 39.130 0.00 0.00 0.00 1.40
5117 5538 9.921637 CCCTTTTGCTATATTTACACTTCAAAA 57.078 29.630 0.00 0.00 33.12 2.44
5167 5588 3.767673 TCCGTTTACTAGAGAATGCTGGT 59.232 43.478 0.00 0.00 33.88 4.00
5174 5595 5.171339 ACTAGAGAATGCTGGTTGATGTT 57.829 39.130 0.00 0.00 0.00 2.71
5200 5621 6.858478 GCAACTTACCTTTTGATCTGTTTCTC 59.142 38.462 0.00 0.00 0.00 2.87
5351 5773 3.068729 GCAGCCGGAAAGGATTGCC 62.069 63.158 5.05 0.00 45.00 4.52
5451 5873 3.555956 ACACACAGTTTCTAAGTCTTGCG 59.444 43.478 0.00 0.00 0.00 4.85
5505 5927 5.180680 TCAAGTTCATCACATTCAGAGCAAG 59.819 40.000 0.00 0.00 0.00 4.01
5693 6120 2.136298 TGGCTGAACCACTTTTGTCA 57.864 45.000 0.00 0.00 46.36 3.58
5694 6121 2.451490 TGGCTGAACCACTTTTGTCAA 58.549 42.857 0.00 0.00 46.36 3.18
5695 6122 2.828520 TGGCTGAACCACTTTTGTCAAA 59.171 40.909 0.00 0.00 46.36 2.69
5696 6123 3.450457 TGGCTGAACCACTTTTGTCAAAT 59.550 39.130 0.00 0.00 46.36 2.32
5777 6204 2.896685 AGCTGTATATCTCAGGGAGCAC 59.103 50.000 9.04 0.00 33.98 4.40
5850 6277 2.742053 TCGCTTTGAAGTTGGTAGATGC 59.258 45.455 0.00 0.00 0.00 3.91
6042 6469 1.600916 GCATTATGGGACGGAGGGC 60.601 63.158 0.00 0.00 0.00 5.19
6133 6561 3.408634 TGCTTGCTAGGTCTTGTTTACC 58.591 45.455 0.00 0.00 37.27 2.85
6134 6562 3.181449 TGCTTGCTAGGTCTTGTTTACCA 60.181 43.478 0.00 0.00 39.64 3.25
6177 6605 7.690256 ACTTCTATCTACATCCTTTTTGGTGT 58.310 34.615 0.00 0.00 37.07 4.16
6230 6660 4.406456 TGATGATTTGCCACTGGTTACTT 58.594 39.130 0.00 0.00 0.00 2.24
6284 6714 4.526650 GGACTTTGAGGATTTGCCCTTTTA 59.473 41.667 0.00 0.00 36.49 1.52
6424 6857 2.354401 CCAGCTCTTCCGCCTCTCA 61.354 63.158 0.00 0.00 0.00 3.27
6600 7033 1.369692 CCTGAACCGTGTGTAGCCA 59.630 57.895 0.00 0.00 0.00 4.75
6605 7038 3.788766 CCGTGTGTAGCCAAGCGC 61.789 66.667 0.00 0.00 37.98 5.92
6630 7063 4.785453 CGGCTGGGGAGCTGGAAC 62.785 72.222 0.00 0.00 37.52 3.62
6632 7065 4.785453 GCTGGGGAGCTGGAACGG 62.785 72.222 0.00 0.00 38.10 4.44
6863 7296 3.441572 GCTGATGCAACACATAGTCCTTT 59.558 43.478 0.00 0.00 39.84 3.11
6872 7305 2.932614 CACATAGTCCTTTCGCTTGGAG 59.067 50.000 0.00 0.00 32.36 3.86
6873 7306 2.832129 ACATAGTCCTTTCGCTTGGAGA 59.168 45.455 0.00 0.00 32.36 3.71
6914 7347 5.242434 TGTGTATTAGCGTCACAAAATCCT 58.758 37.500 0.00 0.00 38.80 3.24
6992 8240 7.574592 GCCATGGAATAATCAATCTAGCACTTC 60.575 40.741 18.40 0.00 0.00 3.01
6993 8241 7.664731 CCATGGAATAATCAATCTAGCACTTCT 59.335 37.037 5.56 0.00 0.00 2.85
6995 8243 8.668510 TGGAATAATCAATCTAGCACTTCTTC 57.331 34.615 0.00 0.00 0.00 2.87
7124 8378 3.628646 GACCATGGCCGCCAACTCT 62.629 63.158 18.00 0.00 36.95 3.24
7234 8488 2.291365 GGCAATTTGGGGATTTCATGC 58.709 47.619 0.00 0.00 0.00 4.06
7273 8527 1.740025 GCAAATCCTCGAAGTCCCAAG 59.260 52.381 0.00 0.00 0.00 3.61
7347 8601 1.808945 CCAAGTAAGCAGTGGCAAGAG 59.191 52.381 0.00 0.00 44.61 2.85
7388 8642 1.792006 GAATTGTCGAAGTCCCACGT 58.208 50.000 0.00 0.00 0.00 4.49
7396 8650 1.429463 GAAGTCCCACGTAAGCAGTG 58.571 55.000 0.00 0.00 45.62 3.66
7607 8861 4.708726 ATGCTTCTAGTGATTTTGTGCC 57.291 40.909 0.00 0.00 0.00 5.01
7611 8865 4.156556 GCTTCTAGTGATTTTGTGCCATCA 59.843 41.667 0.00 0.00 0.00 3.07
7779 9033 2.027751 GGAGTCGGCTCGTATGGC 59.972 66.667 11.57 0.00 42.53 4.40
7946 9200 4.100653 TCATCAAACATGCAGGTTGGAAAA 59.899 37.500 23.91 12.79 45.22 2.29
8023 9277 3.412237 TCCCAAGTAGGTGCACTTAAC 57.588 47.619 17.98 12.20 36.61 2.01
8026 9280 3.502211 CCCAAGTAGGTGCACTTAACTTG 59.498 47.826 30.91 30.91 36.61 3.16
8235 9493 3.003689 GGTGTCTTGTGGTTGACATTCTG 59.996 47.826 0.00 0.00 43.75 3.02
8240 9498 2.653726 TGTGGTTGACATTCTGCAAGT 58.346 42.857 0.00 0.00 33.76 3.16
8277 9535 7.605691 TGCGGGATGTAAAATTGAAATTGAAAT 59.394 29.630 0.00 0.00 0.00 2.17
8331 9589 5.202765 TGTAGTATACCATGTCCCGAAAGA 58.797 41.667 0.00 0.00 42.12 2.52
8366 9624 8.031864 CACAACTCTTGTCAGATAGTATTGACT 58.968 37.037 18.21 0.00 43.23 3.41
8391 9649 5.365605 TCACCTGTATATTGTGGGTTAGGAG 59.634 44.000 0.00 0.00 0.00 3.69
8448 9706 8.575589 TGTGTTGAGCAATTAATGAACATTACT 58.424 29.630 6.73 0.16 33.40 2.24
8541 9799 1.363807 GAGTTTGGCCCTGTTGTGC 59.636 57.895 0.00 0.00 0.00 4.57
8559 9909 4.893608 TGTGCTCTAGCTTACATTCACAA 58.106 39.130 3.26 0.00 42.66 3.33
8709 10059 6.346838 GCAATTCAACACAAGCCAAGATAAAC 60.347 38.462 0.00 0.00 0.00 2.01
8716 10066 6.068670 ACACAAGCCAAGATAAACTTTACCT 58.931 36.000 0.00 0.00 36.61 3.08
8748 10098 6.606796 ACACAGGCCATACATAATGAATCAAA 59.393 34.615 5.01 0.00 37.86 2.69
8749 10099 7.123997 ACACAGGCCATACATAATGAATCAAAA 59.876 33.333 5.01 0.00 37.86 2.44
8750 10100 8.145767 CACAGGCCATACATAATGAATCAAAAT 58.854 33.333 5.01 0.00 37.86 1.82
8751 10101 9.365906 ACAGGCCATACATAATGAATCAAAATA 57.634 29.630 5.01 0.00 37.86 1.40
8768 10118 3.896648 AATACACCTTTGTTGTGCTCG 57.103 42.857 0.00 0.00 37.15 5.03
8790 10140 2.995283 TGATCTCCATCTGCTTGTTGG 58.005 47.619 0.00 0.00 36.98 3.77
8825 10175 1.743996 GTCATCCAAGAGGCCACTTC 58.256 55.000 13.02 0.00 33.74 3.01
8826 10176 1.280421 GTCATCCAAGAGGCCACTTCT 59.720 52.381 13.02 0.00 33.74 2.85
8827 10177 1.988107 TCATCCAAGAGGCCACTTCTT 59.012 47.619 13.02 6.17 33.74 2.52
8852 10202 4.553330 TCATCCAAGAAACTAGTGTCCC 57.447 45.455 9.58 0.00 0.00 4.46
8869 10219 1.154205 CCCGCAACATGATCCTCGAC 61.154 60.000 0.00 0.00 0.00 4.20
8870 10220 0.179100 CCGCAACATGATCCTCGACT 60.179 55.000 0.00 0.00 0.00 4.18
8893 10245 3.227614 TCCCTGGTAAAAGAAAAGCCAC 58.772 45.455 0.00 0.00 0.00 5.01
8977 10330 2.774439 TCGCCTTTTCAAGCTTTCAC 57.226 45.000 0.00 0.00 0.00 3.18
8982 10335 4.329801 CGCCTTTTCAAGCTTTCACTTTTT 59.670 37.500 0.00 0.00 0.00 1.94
9007 10360 6.925610 TTTCATTTCACTTCTCCATATCCG 57.074 37.500 0.00 0.00 0.00 4.18
9009 10362 5.989477 TCATTTCACTTCTCCATATCCGTT 58.011 37.500 0.00 0.00 0.00 4.44
9015 10368 4.339530 CACTTCTCCATATCCGTTCTCTGA 59.660 45.833 0.00 0.00 0.00 3.27
9018 10371 4.537751 TCTCCATATCCGTTCTCTGACTT 58.462 43.478 0.00 0.00 0.00 3.01
9033 10386 4.389374 TCTGACTTTCAATGTTCACCTCC 58.611 43.478 0.00 0.00 0.00 4.30
9049 10402 2.363018 CCCTCGCACCCTCTCTCA 60.363 66.667 0.00 0.00 0.00 3.27
9110 10463 3.133721 ACATGTACCTCTCATCCTTCTGC 59.866 47.826 0.00 0.00 0.00 4.26
9111 10464 3.107402 TGTACCTCTCATCCTTCTGCT 57.893 47.619 0.00 0.00 0.00 4.24
9113 10466 1.494960 ACCTCTCATCCTTCTGCTCC 58.505 55.000 0.00 0.00 0.00 4.70
9114 10467 1.008206 ACCTCTCATCCTTCTGCTCCT 59.992 52.381 0.00 0.00 0.00 3.69
9115 10468 1.688197 CCTCTCATCCTTCTGCTCCTC 59.312 57.143 0.00 0.00 0.00 3.71
9117 10470 0.758123 CTCATCCTTCTGCTCCTCCC 59.242 60.000 0.00 0.00 0.00 4.30
9167 10520 4.148838 CCCCTTGTTGGAAAAGATGTACA 58.851 43.478 0.00 0.00 38.35 2.90
9177 10530 4.949856 GGAAAAGATGTACATCCATGTGGT 59.050 41.667 28.26 8.74 41.89 4.16
9180 10533 4.963318 AGATGTACATCCATGTGGTAGG 57.037 45.455 28.26 0.00 41.89 3.18
9204 10557 4.059459 GCTTGTCGCACCGTCACG 62.059 66.667 0.00 0.00 38.92 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 0.525668 AAGTCAATAGTCGCGCGGAG 60.526 55.000 31.69 13.30 0.00 4.63
6 7 0.524816 GAAGTCAATAGTCGCGCGGA 60.525 55.000 31.69 15.41 0.00 5.54
8 9 1.253034 GAAGAAGTCAATAGTCGCGCG 59.747 52.381 26.76 26.76 0.00 6.86
9 10 1.253034 CGAAGAAGTCAATAGTCGCGC 59.747 52.381 0.00 0.00 0.00 6.86
10 11 2.516923 ACGAAGAAGTCAATAGTCGCG 58.483 47.619 0.00 0.00 31.89 5.87
11 12 3.499048 TGACGAAGAAGTCAATAGTCGC 58.501 45.455 0.00 0.00 46.81 5.19
20 21 1.699343 CCTTCCGTGACGAAGAAGTC 58.301 55.000 18.04 0.00 41.57 3.01
21 22 0.319641 GCCTTCCGTGACGAAGAAGT 60.320 55.000 18.04 0.00 41.57 3.01
22 23 1.014564 GGCCTTCCGTGACGAAGAAG 61.015 60.000 6.54 11.62 41.57 2.85
23 24 1.005394 GGCCTTCCGTGACGAAGAA 60.005 57.895 6.54 1.05 41.57 2.52
24 25 2.654877 GGCCTTCCGTGACGAAGA 59.345 61.111 6.54 0.00 41.57 2.87
25 26 2.434359 GGGCCTTCCGTGACGAAG 60.434 66.667 6.54 8.30 39.22 3.79
34 35 3.327404 TTGGAGTCCGGGCCTTCC 61.327 66.667 0.08 4.55 0.00 3.46
35 36 2.046217 GTTGGAGTCCGGGCCTTC 60.046 66.667 0.08 0.00 0.00 3.46
36 37 4.016706 CGTTGGAGTCCGGGCCTT 62.017 66.667 0.08 0.00 0.00 4.35
38 39 4.754667 GTCGTTGGAGTCCGGGCC 62.755 72.222 0.08 1.57 0.00 5.80
39 40 2.345760 TAGTCGTTGGAGTCCGGGC 61.346 63.158 0.00 0.00 0.00 6.13
40 41 0.964358 AGTAGTCGTTGGAGTCCGGG 60.964 60.000 0.00 0.00 0.00 5.73
41 42 0.886563 AAGTAGTCGTTGGAGTCCGG 59.113 55.000 4.30 0.00 0.00 5.14
42 43 3.243002 GGATAAGTAGTCGTTGGAGTCCG 60.243 52.174 4.30 0.00 0.00 4.79
43 44 3.243002 CGGATAAGTAGTCGTTGGAGTCC 60.243 52.174 0.73 0.73 0.00 3.85
44 45 3.624861 TCGGATAAGTAGTCGTTGGAGTC 59.375 47.826 0.00 0.00 0.00 3.36
45 46 3.376546 GTCGGATAAGTAGTCGTTGGAGT 59.623 47.826 0.00 0.00 0.00 3.85
46 47 3.545624 CGTCGGATAAGTAGTCGTTGGAG 60.546 52.174 0.00 0.00 0.00 3.86
47 48 2.352651 CGTCGGATAAGTAGTCGTTGGA 59.647 50.000 0.00 0.00 0.00 3.53
48 49 2.352651 TCGTCGGATAAGTAGTCGTTGG 59.647 50.000 0.00 0.00 0.00 3.77
49 50 3.349176 GTCGTCGGATAAGTAGTCGTTG 58.651 50.000 0.00 0.00 0.00 4.10
50 51 2.029728 CGTCGTCGGATAAGTAGTCGTT 59.970 50.000 0.00 0.00 0.00 3.85
51 52 1.590238 CGTCGTCGGATAAGTAGTCGT 59.410 52.381 0.00 0.00 0.00 4.34
52 53 1.854743 TCGTCGTCGGATAAGTAGTCG 59.145 52.381 1.55 0.00 37.69 4.18
53 54 2.863137 AGTCGTCGTCGGATAAGTAGTC 59.137 50.000 1.55 0.00 37.69 2.59
54 55 2.898705 AGTCGTCGTCGGATAAGTAGT 58.101 47.619 1.55 0.00 37.69 2.73
55 56 3.940657 AAGTCGTCGTCGGATAAGTAG 57.059 47.619 1.55 0.00 37.69 2.57
56 57 4.685169 AAAAGTCGTCGTCGGATAAGTA 57.315 40.909 1.55 0.00 37.69 2.24
57 58 3.565905 AAAAGTCGTCGTCGGATAAGT 57.434 42.857 1.55 0.00 37.69 2.24
58 59 3.302699 GGAAAAAGTCGTCGTCGGATAAG 59.697 47.826 1.55 0.00 37.69 1.73
59 60 3.244976 GGAAAAAGTCGTCGTCGGATAA 58.755 45.455 1.55 0.00 37.69 1.75
60 61 2.415893 GGGAAAAAGTCGTCGTCGGATA 60.416 50.000 1.55 0.00 37.69 2.59
61 62 1.670967 GGGAAAAAGTCGTCGTCGGAT 60.671 52.381 1.55 0.00 37.69 4.18
62 63 0.318955 GGGAAAAAGTCGTCGTCGGA 60.319 55.000 1.55 0.00 37.69 4.55
63 64 1.287041 GGGGAAAAAGTCGTCGTCGG 61.287 60.000 1.55 0.00 37.69 4.79
64 65 1.611592 CGGGGAAAAAGTCGTCGTCG 61.612 60.000 0.00 0.00 38.55 5.12
65 66 0.318955 TCGGGGAAAAAGTCGTCGTC 60.319 55.000 0.00 0.00 0.00 4.20
66 67 0.598419 GTCGGGGAAAAAGTCGTCGT 60.598 55.000 0.00 0.00 0.00 4.34
67 68 0.598158 TGTCGGGGAAAAAGTCGTCG 60.598 55.000 0.00 0.00 0.00 5.12
68 69 1.730612 GATGTCGGGGAAAAAGTCGTC 59.269 52.381 0.00 0.00 0.00 4.20
69 70 1.804601 GATGTCGGGGAAAAAGTCGT 58.195 50.000 0.00 0.00 0.00 4.34
70 71 0.719465 CGATGTCGGGGAAAAAGTCG 59.281 55.000 0.00 0.00 35.37 4.18
71 72 1.730612 GTCGATGTCGGGGAAAAAGTC 59.269 52.381 2.25 0.00 40.29 3.01
72 73 1.071071 TGTCGATGTCGGGGAAAAAGT 59.929 47.619 2.25 0.00 40.29 2.66
73 74 1.803334 TGTCGATGTCGGGGAAAAAG 58.197 50.000 2.25 0.00 40.29 2.27
74 75 1.874872 GTTGTCGATGTCGGGGAAAAA 59.125 47.619 2.25 0.00 40.29 1.94
75 76 1.515081 GTTGTCGATGTCGGGGAAAA 58.485 50.000 2.25 0.00 40.29 2.29
76 77 0.320946 GGTTGTCGATGTCGGGGAAA 60.321 55.000 2.25 0.00 40.29 3.13
77 78 1.189524 AGGTTGTCGATGTCGGGGAA 61.190 55.000 2.25 0.00 40.29 3.97
78 79 1.601419 GAGGTTGTCGATGTCGGGGA 61.601 60.000 2.25 0.00 40.29 4.81
79 80 1.153628 GAGGTTGTCGATGTCGGGG 60.154 63.158 2.25 0.00 40.29 5.73
80 81 1.153628 GGAGGTTGTCGATGTCGGG 60.154 63.158 2.25 0.00 40.29 5.14
81 82 0.179134 GAGGAGGTTGTCGATGTCGG 60.179 60.000 2.25 0.00 40.29 4.79
82 83 0.523546 CGAGGAGGTTGTCGATGTCG 60.524 60.000 0.00 0.00 38.50 4.35
83 84 0.809385 TCGAGGAGGTTGTCGATGTC 59.191 55.000 0.00 0.00 40.19 3.06
84 85 0.526662 GTCGAGGAGGTTGTCGATGT 59.473 55.000 0.00 0.00 46.22 3.06
85 86 0.523546 CGTCGAGGAGGTTGTCGATG 60.524 60.000 0.00 0.00 46.22 3.84
86 87 0.675837 TCGTCGAGGAGGTTGTCGAT 60.676 55.000 3.17 0.00 46.22 3.59
87 88 1.301953 TCGTCGAGGAGGTTGTCGA 60.302 57.895 3.17 0.00 42.74 4.20
88 89 1.154263 GTCGTCGAGGAGGTTGTCG 60.154 63.158 8.30 0.00 37.54 4.35
89 90 0.526662 ATGTCGTCGAGGAGGTTGTC 59.473 55.000 8.30 0.00 0.00 3.18
90 91 0.243907 CATGTCGTCGAGGAGGTTGT 59.756 55.000 8.30 0.00 0.00 3.32
91 92 0.458543 CCATGTCGTCGAGGAGGTTG 60.459 60.000 8.30 6.49 0.00 3.77
92 93 1.890894 CCATGTCGTCGAGGAGGTT 59.109 57.895 8.30 0.00 0.00 3.50
93 94 2.711922 GCCATGTCGTCGAGGAGGT 61.712 63.158 8.30 0.00 0.00 3.85
94 95 2.105128 GCCATGTCGTCGAGGAGG 59.895 66.667 8.30 7.75 0.00 4.30
95 96 1.226802 CAGCCATGTCGTCGAGGAG 60.227 63.158 8.30 0.00 0.00 3.69
96 97 2.710902 CCAGCCATGTCGTCGAGGA 61.711 63.158 3.17 3.17 0.00 3.71
97 98 2.202797 CCAGCCATGTCGTCGAGG 60.203 66.667 0.00 0.00 0.00 4.63
98 99 2.887568 GCCAGCCATGTCGTCGAG 60.888 66.667 0.00 0.00 0.00 4.04
99 100 4.794439 CGCCAGCCATGTCGTCGA 62.794 66.667 0.00 0.00 0.00 4.20
100 101 4.794439 TCGCCAGCCATGTCGTCG 62.794 66.667 0.00 0.00 0.00 5.12
101 102 2.887568 CTCGCCAGCCATGTCGTC 60.888 66.667 0.00 0.00 0.00 4.20
102 103 4.457496 CCTCGCCAGCCATGTCGT 62.457 66.667 0.00 0.00 0.00 4.34
103 104 4.147449 TCCTCGCCAGCCATGTCG 62.147 66.667 0.00 0.00 0.00 4.35
104 105 2.512515 GTCCTCGCCAGCCATGTC 60.513 66.667 0.00 0.00 0.00 3.06
105 106 3.321648 TGTCCTCGCCAGCCATGT 61.322 61.111 0.00 0.00 0.00 3.21
106 107 1.960040 TAGTGTCCTCGCCAGCCATG 61.960 60.000 0.00 0.00 0.00 3.66
107 108 1.264749 TTAGTGTCCTCGCCAGCCAT 61.265 55.000 0.00 0.00 0.00 4.40
108 109 1.911269 TTAGTGTCCTCGCCAGCCA 60.911 57.895 0.00 0.00 0.00 4.75
109 110 1.448013 GTTAGTGTCCTCGCCAGCC 60.448 63.158 0.00 0.00 0.00 4.85
110 111 1.448013 GGTTAGTGTCCTCGCCAGC 60.448 63.158 0.00 0.00 0.00 4.85
111 112 1.218316 GGGTTAGTGTCCTCGCCAG 59.782 63.158 0.00 0.00 0.00 4.85
112 113 2.288025 GGGGTTAGTGTCCTCGCCA 61.288 63.158 0.00 0.00 33.92 5.69
113 114 1.833787 TTGGGGTTAGTGTCCTCGCC 61.834 60.000 0.00 0.00 0.00 5.54
114 115 0.391263 CTTGGGGTTAGTGTCCTCGC 60.391 60.000 0.00 0.00 0.00 5.03
115 116 1.067071 GTCTTGGGGTTAGTGTCCTCG 60.067 57.143 0.00 0.00 0.00 4.63
116 117 1.278413 GGTCTTGGGGTTAGTGTCCTC 59.722 57.143 0.00 0.00 0.00 3.71
117 118 1.359168 GGTCTTGGGGTTAGTGTCCT 58.641 55.000 0.00 0.00 0.00 3.85
118 119 1.003233 CTGGTCTTGGGGTTAGTGTCC 59.997 57.143 0.00 0.00 0.00 4.02
119 120 1.697982 ACTGGTCTTGGGGTTAGTGTC 59.302 52.381 0.00 0.00 0.00 3.67
120 121 1.815757 ACTGGTCTTGGGGTTAGTGT 58.184 50.000 0.00 0.00 0.00 3.55
121 122 2.904434 AGTACTGGTCTTGGGGTTAGTG 59.096 50.000 0.00 0.00 0.00 2.74
122 123 3.271153 AGTACTGGTCTTGGGGTTAGT 57.729 47.619 0.00 0.00 0.00 2.24
123 124 3.055312 GGAAGTACTGGTCTTGGGGTTAG 60.055 52.174 0.00 0.00 0.00 2.34
124 125 2.908351 GGAAGTACTGGTCTTGGGGTTA 59.092 50.000 0.00 0.00 0.00 2.85
125 126 1.703513 GGAAGTACTGGTCTTGGGGTT 59.296 52.381 0.00 0.00 0.00 4.11
126 127 1.359168 GGAAGTACTGGTCTTGGGGT 58.641 55.000 0.00 0.00 0.00 4.95
127 128 0.249398 CGGAAGTACTGGTCTTGGGG 59.751 60.000 0.00 0.00 0.00 4.96
128 129 0.391263 GCGGAAGTACTGGTCTTGGG 60.391 60.000 0.00 0.00 0.00 4.12
129 130 0.608640 AGCGGAAGTACTGGTCTTGG 59.391 55.000 0.00 0.00 0.00 3.61
130 131 1.000955 ACAGCGGAAGTACTGGTCTTG 59.999 52.381 0.00 0.00 38.25 3.02
131 132 1.339097 ACAGCGGAAGTACTGGTCTT 58.661 50.000 0.00 0.00 38.25 3.01
132 133 1.000955 CAACAGCGGAAGTACTGGTCT 59.999 52.381 0.00 0.00 38.25 3.85
133 134 1.270147 ACAACAGCGGAAGTACTGGTC 60.270 52.381 0.00 0.00 38.25 4.02
134 135 0.756903 ACAACAGCGGAAGTACTGGT 59.243 50.000 0.00 0.00 38.25 4.00
135 136 2.334838 GTACAACAGCGGAAGTACTGG 58.665 52.381 0.00 0.00 38.25 4.00
136 137 2.288579 TGGTACAACAGCGGAAGTACTG 60.289 50.000 17.18 0.00 37.55 2.74
137 138 1.965643 TGGTACAACAGCGGAAGTACT 59.034 47.619 17.18 0.00 37.55 2.73
138 139 2.443887 TGGTACAACAGCGGAAGTAC 57.556 50.000 12.33 12.33 36.88 2.73
152 153 9.988350 CAGAAAAAGTATGAACATGTATGGTAC 57.012 33.333 0.00 0.79 0.00 3.34
153 154 9.733556 ACAGAAAAAGTATGAACATGTATGGTA 57.266 29.630 0.00 0.00 0.00 3.25
154 155 8.635765 ACAGAAAAAGTATGAACATGTATGGT 57.364 30.769 0.00 0.00 0.00 3.55
155 156 9.912634 AAACAGAAAAAGTATGAACATGTATGG 57.087 29.630 0.00 0.00 0.00 2.74
159 160 8.902806 TCTCAAACAGAAAAAGTATGAACATGT 58.097 29.630 0.00 0.00 0.00 3.21
160 161 9.903682 ATCTCAAACAGAAAAAGTATGAACATG 57.096 29.630 0.00 0.00 33.62 3.21
162 163 9.950680 GAATCTCAAACAGAAAAAGTATGAACA 57.049 29.630 0.00 0.00 33.62 3.18
165 166 8.292448 GCAGAATCTCAAACAGAAAAAGTATGA 58.708 33.333 0.00 0.00 33.62 2.15
166 167 7.540055 GGCAGAATCTCAAACAGAAAAAGTATG 59.460 37.037 0.00 0.00 33.62 2.39
167 168 7.231317 TGGCAGAATCTCAAACAGAAAAAGTAT 59.769 33.333 0.00 0.00 33.62 2.12
168 169 6.545666 TGGCAGAATCTCAAACAGAAAAAGTA 59.454 34.615 0.00 0.00 33.62 2.24
169 170 5.360714 TGGCAGAATCTCAAACAGAAAAAGT 59.639 36.000 0.00 0.00 33.62 2.66
170 171 5.689068 GTGGCAGAATCTCAAACAGAAAAAG 59.311 40.000 0.00 0.00 33.62 2.27
171 172 5.126869 TGTGGCAGAATCTCAAACAGAAAAA 59.873 36.000 0.00 0.00 33.62 1.94
172 173 4.644234 TGTGGCAGAATCTCAAACAGAAAA 59.356 37.500 0.00 0.00 33.62 2.29
173 174 4.206375 TGTGGCAGAATCTCAAACAGAAA 58.794 39.130 0.00 0.00 33.62 2.52
174 175 3.817084 CTGTGGCAGAATCTCAAACAGAA 59.183 43.478 9.06 0.00 36.51 3.02
175 176 3.181451 ACTGTGGCAGAATCTCAAACAGA 60.181 43.478 17.48 0.00 37.56 3.41
176 177 3.144506 ACTGTGGCAGAATCTCAAACAG 58.855 45.455 11.83 11.83 39.49 3.16
177 178 3.213206 ACTGTGGCAGAATCTCAAACA 57.787 42.857 2.91 0.00 35.18 2.83
178 179 4.276926 AGAAACTGTGGCAGAATCTCAAAC 59.723 41.667 2.91 0.00 35.18 2.93
179 180 4.464008 AGAAACTGTGGCAGAATCTCAAA 58.536 39.130 2.91 0.00 35.18 2.69
180 181 4.090761 AGAAACTGTGGCAGAATCTCAA 57.909 40.909 2.91 0.00 35.18 3.02
181 182 3.777106 AGAAACTGTGGCAGAATCTCA 57.223 42.857 2.91 0.00 35.18 3.27
182 183 3.365767 GCAAGAAACTGTGGCAGAATCTC 60.366 47.826 2.91 0.00 35.18 2.75
183 184 2.555757 GCAAGAAACTGTGGCAGAATCT 59.444 45.455 2.91 3.47 35.18 2.40
184 185 2.555757 AGCAAGAAACTGTGGCAGAATC 59.444 45.455 2.91 1.36 35.18 2.52
185 186 2.590821 AGCAAGAAACTGTGGCAGAAT 58.409 42.857 2.91 0.00 35.18 2.40
186 187 2.057137 AGCAAGAAACTGTGGCAGAA 57.943 45.000 2.91 0.00 35.18 3.02
187 188 2.057137 AAGCAAGAAACTGTGGCAGA 57.943 45.000 2.91 0.00 35.18 4.26
188 189 2.877043 AAAGCAAGAAACTGTGGCAG 57.123 45.000 0.00 0.00 37.52 4.85
189 190 3.066621 CACTAAAGCAAGAAACTGTGGCA 59.933 43.478 0.00 0.00 0.00 4.92
190 191 3.066760 ACACTAAAGCAAGAAACTGTGGC 59.933 43.478 0.00 0.00 0.00 5.01
191 192 4.900635 ACACTAAAGCAAGAAACTGTGG 57.099 40.909 0.00 0.00 0.00 4.17
192 193 5.853282 GCATACACTAAAGCAAGAAACTGTG 59.147 40.000 0.00 0.00 0.00 3.66
193 194 5.765182 AGCATACACTAAAGCAAGAAACTGT 59.235 36.000 0.00 0.00 0.00 3.55
194 195 6.148480 AGAGCATACACTAAAGCAAGAAACTG 59.852 38.462 0.00 0.00 0.00 3.16
195 196 6.234177 AGAGCATACACTAAAGCAAGAAACT 58.766 36.000 0.00 0.00 0.00 2.66
196 197 6.487689 AGAGCATACACTAAAGCAAGAAAC 57.512 37.500 0.00 0.00 0.00 2.78
197 198 7.611770 TCTAGAGCATACACTAAAGCAAGAAA 58.388 34.615 0.00 0.00 0.00 2.52
198 199 7.170393 TCTAGAGCATACACTAAAGCAAGAA 57.830 36.000 0.00 0.00 0.00 2.52
199 200 6.775594 TCTAGAGCATACACTAAAGCAAGA 57.224 37.500 0.00 0.00 0.00 3.02
225 226 9.679661 TCTGCAAATATGAACTAGAACCAAATA 57.320 29.630 0.00 0.00 0.00 1.40
226 227 8.579850 TCTGCAAATATGAACTAGAACCAAAT 57.420 30.769 0.00 0.00 0.00 2.32
227 228 7.994425 TCTGCAAATATGAACTAGAACCAAA 57.006 32.000 0.00 0.00 0.00 3.28
228 229 9.109393 GTATCTGCAAATATGAACTAGAACCAA 57.891 33.333 0.00 0.00 0.00 3.67
229 230 8.486210 AGTATCTGCAAATATGAACTAGAACCA 58.514 33.333 0.00 0.00 0.00 3.67
230 231 8.894768 AGTATCTGCAAATATGAACTAGAACC 57.105 34.615 0.00 0.00 0.00 3.62
245 246 9.809096 CAGAGAGAAAGTAAATAGTATCTGCAA 57.191 33.333 0.00 0.00 0.00 4.08
246 247 8.972127 ACAGAGAGAAAGTAAATAGTATCTGCA 58.028 33.333 0.00 0.00 35.09 4.41
247 248 9.458374 GACAGAGAGAAAGTAAATAGTATCTGC 57.542 37.037 0.00 0.00 35.09 4.26
253 254 9.868277 CAATCTGACAGAGAGAAAGTAAATAGT 57.132 33.333 11.52 0.00 32.80 2.12
254 255 8.816144 GCAATCTGACAGAGAGAAAGTAAATAG 58.184 37.037 11.52 0.00 32.80 1.73
255 256 8.314021 TGCAATCTGACAGAGAGAAAGTAAATA 58.686 33.333 11.52 0.00 32.80 1.40
256 257 7.164122 TGCAATCTGACAGAGAGAAAGTAAAT 58.836 34.615 11.52 0.00 32.80 1.40
257 258 6.524734 TGCAATCTGACAGAGAGAAAGTAAA 58.475 36.000 11.52 0.00 32.80 2.01
258 259 6.101650 TGCAATCTGACAGAGAGAAAGTAA 57.898 37.500 11.52 0.00 32.80 2.24
259 260 5.728637 TGCAATCTGACAGAGAGAAAGTA 57.271 39.130 11.52 0.00 32.80 2.24
260 261 4.613925 TGCAATCTGACAGAGAGAAAGT 57.386 40.909 11.52 0.00 32.80 2.66
261 262 4.201832 GCATGCAATCTGACAGAGAGAAAG 60.202 45.833 14.21 0.00 32.80 2.62
262 263 3.688185 GCATGCAATCTGACAGAGAGAAA 59.312 43.478 14.21 0.00 32.80 2.52
263 264 3.268330 GCATGCAATCTGACAGAGAGAA 58.732 45.455 14.21 0.67 32.80 2.87
264 265 2.419713 GGCATGCAATCTGACAGAGAGA 60.420 50.000 21.36 0.00 32.80 3.10
265 266 1.941294 GGCATGCAATCTGACAGAGAG 59.059 52.381 21.36 6.91 32.80 3.20
266 267 1.558294 AGGCATGCAATCTGACAGAGA 59.442 47.619 21.36 0.00 34.25 3.10
267 268 2.039818 AGGCATGCAATCTGACAGAG 57.960 50.000 21.36 0.00 0.00 3.35
268 269 2.089201 CAAGGCATGCAATCTGACAGA 58.911 47.619 21.36 7.80 0.00 3.41
269 270 2.561733 CAAGGCATGCAATCTGACAG 57.438 50.000 21.36 0.00 0.00 3.51
280 281 1.065701 GCAGAGATCAAGCAAGGCATG 59.934 52.381 0.00 0.00 0.00 4.06
281 282 1.064611 AGCAGAGATCAAGCAAGGCAT 60.065 47.619 0.00 0.00 0.00 4.40
282 283 0.327259 AGCAGAGATCAAGCAAGGCA 59.673 50.000 0.00 0.00 0.00 4.75
283 284 2.322355 TAGCAGAGATCAAGCAAGGC 57.678 50.000 0.00 0.00 0.00 4.35
284 285 5.831702 AAAATAGCAGAGATCAAGCAAGG 57.168 39.130 0.00 0.00 0.00 3.61
305 306 9.494271 CAGAAATACTAGATAAAGCATGGCTAA 57.506 33.333 0.00 0.00 38.25 3.09
306 307 8.651389 ACAGAAATACTAGATAAAGCATGGCTA 58.349 33.333 0.00 0.00 38.25 3.93
307 308 7.512992 ACAGAAATACTAGATAAAGCATGGCT 58.487 34.615 0.00 0.00 42.56 4.75
308 309 7.736447 ACAGAAATACTAGATAAAGCATGGC 57.264 36.000 0.00 0.00 0.00 4.40
365 366 6.556212 TGTATTCGTGTGTTGACATGTTTTT 58.444 32.000 0.00 0.00 39.73 1.94
366 367 6.125327 TGTATTCGTGTGTTGACATGTTTT 57.875 33.333 0.00 0.00 39.73 2.43
367 368 5.743026 TGTATTCGTGTGTTGACATGTTT 57.257 34.783 0.00 0.00 39.73 2.83
368 369 5.743026 TTGTATTCGTGTGTTGACATGTT 57.257 34.783 0.00 0.00 39.73 2.71
369 370 5.743026 TTTGTATTCGTGTGTTGACATGT 57.257 34.783 0.00 0.00 39.73 3.21
370 371 7.167302 ACAATTTTGTATTCGTGTGTTGACATG 59.833 33.333 0.00 0.00 40.16 3.21
371 372 7.167302 CACAATTTTGTATTCGTGTGTTGACAT 59.833 33.333 0.00 0.00 39.91 3.06
372 373 6.470556 CACAATTTTGTATTCGTGTGTTGACA 59.529 34.615 0.00 0.00 39.91 3.58
393 394 5.221342 GGACATGTTTTACCATCCAACACAA 60.221 40.000 0.00 0.00 33.33 3.33
396 397 3.504134 CGGACATGTTTTACCATCCAACA 59.496 43.478 0.00 0.00 34.97 3.33
400 401 2.993937 TCCGGACATGTTTTACCATCC 58.006 47.619 0.00 0.00 0.00 3.51
423 424 2.923837 GCCCCATTATGTCCCCGT 59.076 61.111 0.00 0.00 0.00 5.28
424 425 2.281484 CGCCCCATTATGTCCCCG 60.281 66.667 0.00 0.00 0.00 5.73
426 427 0.396556 AAACCGCCCCATTATGTCCC 60.397 55.000 0.00 0.00 0.00 4.46
427 428 0.744281 CAAACCGCCCCATTATGTCC 59.256 55.000 0.00 0.00 0.00 4.02
432 433 0.333312 ACCATCAAACCGCCCCATTA 59.667 50.000 0.00 0.00 0.00 1.90
433 434 1.078347 ACCATCAAACCGCCCCATT 59.922 52.632 0.00 0.00 0.00 3.16
453 454 3.211963 GGCCACACCGGATGCATC 61.212 66.667 18.81 18.81 36.56 3.91
523 550 0.618981 GTTCGGGGGTCTTCCTTCAT 59.381 55.000 0.00 0.00 35.33 2.57
524 551 1.486145 GGTTCGGGGGTCTTCCTTCA 61.486 60.000 0.00 0.00 35.33 3.02
525 552 1.298993 GGTTCGGGGGTCTTCCTTC 59.701 63.158 0.00 0.00 35.33 3.46
564 614 2.428085 GCGGAAGGGGTCTCTCCTC 61.428 68.421 0.00 0.00 36.82 3.71
565 615 2.364448 GCGGAAGGGGTCTCTCCT 60.364 66.667 0.00 0.00 35.88 3.69
566 616 3.471806 GGCGGAAGGGGTCTCTCC 61.472 72.222 0.00 0.00 0.00 3.71
567 617 2.683933 TGGCGGAAGGGGTCTCTC 60.684 66.667 0.00 0.00 0.00 3.20
568 618 3.003763 GTGGCGGAAGGGGTCTCT 61.004 66.667 0.00 0.00 0.00 3.10
569 619 4.452733 CGTGGCGGAAGGGGTCTC 62.453 72.222 0.00 0.00 0.00 3.36
598 648 2.294449 AGGAAGAAAGGAAAGCCACC 57.706 50.000 0.00 0.00 36.29 4.61
600 650 2.490902 GGGAAGGAAGAAAGGAAAGCCA 60.491 50.000 0.00 0.00 36.29 4.75
601 651 2.171840 GGGAAGGAAGAAAGGAAAGCC 58.828 52.381 0.00 0.00 0.00 4.35
603 653 3.425659 CAGGGGAAGGAAGAAAGGAAAG 58.574 50.000 0.00 0.00 0.00 2.62
607 660 0.678048 CGCAGGGGAAGGAAGAAAGG 60.678 60.000 0.00 0.00 0.00 3.11
806 871 0.558220 AGTCTCCATCCATCTCCGGA 59.442 55.000 2.93 2.93 40.07 5.14
902 973 4.720902 TGGTGGCGATGCTGGTGG 62.721 66.667 0.00 0.00 0.00 4.61
903 974 3.434319 GTGGTGGCGATGCTGGTG 61.434 66.667 0.00 0.00 0.00 4.17
904 975 2.697147 AAAGTGGTGGCGATGCTGGT 62.697 55.000 0.00 0.00 0.00 4.00
905 976 1.926511 GAAAGTGGTGGCGATGCTGG 61.927 60.000 0.00 0.00 0.00 4.85
906 977 1.503542 GAAAGTGGTGGCGATGCTG 59.496 57.895 0.00 0.00 0.00 4.41
907 978 1.675641 GGAAAGTGGTGGCGATGCT 60.676 57.895 0.00 0.00 0.00 3.79
908 979 2.700773 GGGAAAGTGGTGGCGATGC 61.701 63.158 0.00 0.00 0.00 3.91
909 980 2.046285 GGGGAAAGTGGTGGCGATG 61.046 63.158 0.00 0.00 0.00 3.84
910 981 2.198304 GAGGGGAAAGTGGTGGCGAT 62.198 60.000 0.00 0.00 0.00 4.58
1263 1340 4.988716 ACAGGCTCCCCGACGACA 62.989 66.667 0.00 0.00 35.76 4.35
1350 1427 4.643334 ACAAAGAGGTAAAACCAACTGACC 59.357 41.667 0.00 0.00 41.95 4.02
1380 1508 1.217585 CGAGCCACACACACACAGAG 61.218 60.000 0.00 0.00 0.00 3.35
1382 1510 2.885676 GCGAGCCACACACACACAG 61.886 63.158 0.00 0.00 0.00 3.66
1412 1783 3.691118 ACATGTATCACCAACATCAGCAC 59.309 43.478 0.00 0.00 35.39 4.40
1413 1784 3.940852 GACATGTATCACCAACATCAGCA 59.059 43.478 0.00 0.00 35.39 4.41
1414 1785 3.001634 CGACATGTATCACCAACATCAGC 59.998 47.826 0.00 0.00 35.39 4.26
1415 1786 4.432712 TCGACATGTATCACCAACATCAG 58.567 43.478 0.00 0.00 35.39 2.90
1416 1787 4.464069 TCGACATGTATCACCAACATCA 57.536 40.909 0.00 0.00 35.39 3.07
1417 1788 5.049828 TCATCGACATGTATCACCAACATC 58.950 41.667 0.00 0.00 35.39 3.06
1418 1789 4.811024 GTCATCGACATGTATCACCAACAT 59.189 41.667 0.00 0.00 38.08 2.71
1419 1790 4.180817 GTCATCGACATGTATCACCAACA 58.819 43.478 0.00 0.00 32.09 3.33
1437 1811 1.729470 CGACTAGCTCCTGCCGTCAT 61.729 60.000 0.00 0.00 38.93 3.06
1488 1862 1.009389 GGCAACTCGTCTTCACCTCG 61.009 60.000 0.00 0.00 0.00 4.63
1529 1903 1.946267 CTGGTACACCAAACGGCAC 59.054 57.895 2.14 0.00 46.97 5.01
1711 2089 2.771943 CCAACAGGAATGCCCTAGAGTA 59.228 50.000 0.00 0.00 45.60 2.59
1712 2090 1.561542 CCAACAGGAATGCCCTAGAGT 59.438 52.381 0.00 0.00 45.60 3.24
1713 2091 1.839994 TCCAACAGGAATGCCCTAGAG 59.160 52.381 0.00 0.00 45.60 2.43
1715 2093 2.290896 TGTTCCAACAGGAATGCCCTAG 60.291 50.000 0.00 0.00 45.60 3.02
1716 2094 1.707989 TGTTCCAACAGGAATGCCCTA 59.292 47.619 0.00 0.00 45.60 3.53
1718 2096 1.205417 CATGTTCCAACAGGAATGCCC 59.795 52.381 0.00 0.00 42.86 5.36
1726 2135 3.635331 CTTCAGCAACATGTTCCAACAG 58.365 45.455 8.48 0.00 43.04 3.16
1892 2303 0.247736 CTTGAGAAGGGACCGTCAGG 59.752 60.000 7.03 0.00 45.13 3.86
1918 2330 8.821686 TCTCTTTTCAATTAGGCCATATTGAA 57.178 30.769 27.85 27.85 44.59 2.69
2035 2447 1.073125 TCGCCATCCCAGTTCTTTGAA 59.927 47.619 0.00 0.00 0.00 2.69
2077 2489 6.207810 GTGGAGTTCATAAATTGTGTTACCCA 59.792 38.462 0.00 0.00 0.00 4.51
2131 2543 1.179152 CCATTGCATGCTCCACTTCA 58.821 50.000 20.33 0.00 0.00 3.02
2147 2559 1.106351 TTTCCAACGTGCACAGCCAT 61.106 50.000 18.64 0.00 0.00 4.40
2159 2571 5.515797 AGTCCTTAGCAACTTTTTCCAAC 57.484 39.130 0.00 0.00 0.00 3.77
2307 2719 5.533154 TGTTATTGTTAAGACCCAACACAGG 59.467 40.000 0.00 0.00 35.70 4.00
2334 2746 2.762535 AAACATGGACGGAGGTAGTG 57.237 50.000 0.00 0.00 0.00 2.74
2349 2762 7.343357 CAAAATATGAGGGGGACTAGTAAACA 58.657 38.462 0.00 0.00 0.00 2.83
2389 2802 1.540267 GTCAGTGGCTCGACAGAACTA 59.460 52.381 0.00 0.00 32.24 2.24
2575 2988 5.542251 ACCAATAGCCACAAAAATAAGGTGT 59.458 36.000 0.00 0.00 0.00 4.16
2582 2995 6.298441 AGCATAACCAATAGCCACAAAAAT 57.702 33.333 0.00 0.00 0.00 1.82
2688 3101 8.677300 GGAAAAGCAATAATGAGTCTGTAATCA 58.323 33.333 0.00 0.00 0.00 2.57
2830 3243 8.349983 CAAACATGCCCTACATACCTTAATTAC 58.650 37.037 0.00 0.00 36.64 1.89
2878 3291 8.705048 TTTTGTAAAAGCAACCGTAAGAATTT 57.295 26.923 0.00 0.00 43.02 1.82
2904 3317 1.745653 GGTTTAGCATCAAGAGGGCAC 59.254 52.381 0.00 0.00 0.00 5.01
3119 3539 7.469456 GCCAGATGTTGAAACACCTAAGTTAAA 60.469 37.037 0.00 0.00 42.51 1.52
3141 3561 3.102052 GCATATTTGGTTGGATGCCAG 57.898 47.619 0.00 0.00 39.00 4.85
3144 3564 2.431782 ACAGGCATATTTGGTTGGATGC 59.568 45.455 0.00 0.00 43.19 3.91
3423 3843 4.337836 TGCTGTTTGAAACATGCAGAGTTA 59.662 37.500 22.15 7.18 41.26 2.24
3424 3844 3.130869 TGCTGTTTGAAACATGCAGAGTT 59.869 39.130 22.15 1.76 41.26 3.01
3425 3845 2.689471 TGCTGTTTGAAACATGCAGAGT 59.311 40.909 22.15 0.00 41.26 3.24
3619 4039 5.273944 CAAAAGTCACTGCAGAAAGGTAAC 58.726 41.667 23.35 7.17 0.00 2.50
3718 4138 4.141937 ACATTTGTCTGAGAGCGCCTAATA 60.142 41.667 2.29 0.00 0.00 0.98
3860 4280 6.457934 CCAATATCATTTGCATCTATCGGCTC 60.458 42.308 0.00 0.00 0.00 4.70
3915 4335 2.218953 GATGCTGCCATCATTGTTGG 57.781 50.000 9.08 9.08 45.75 3.77
4091 4511 4.047822 GAGTCCAATCTTCTGCTATCGTG 58.952 47.826 0.00 0.00 0.00 4.35
4312 4732 1.027357 CCTGGATTCCTCGCCAAATG 58.973 55.000 3.95 0.00 32.95 2.32
4363 4783 4.508662 AGCAGTCCACAGCTTTAACTATC 58.491 43.478 0.00 0.00 35.00 2.08
4484 4904 5.808030 GCCACTTCAGAGTCTATAAACAGAC 59.192 44.000 0.00 0.00 44.44 3.51
4604 5024 6.018262 TGTTTGAGAAATCCTCGTACAAACAG 60.018 38.462 15.21 0.00 43.49 3.16
4614 5034 6.039829 GGGGTAATGATGTTTGAGAAATCCTC 59.960 42.308 0.00 0.00 42.30 3.71
4695 5115 9.742144 TTTTAGGATAGCCATAGTACACAAAAA 57.258 29.630 0.00 0.00 36.29 1.94
4824 5244 4.158394 GGCCAATCTTTCAGTTTCAGCATA 59.842 41.667 0.00 0.00 0.00 3.14
5167 5588 6.214191 TCAAAAGGTAAGTTGCAACATCAA 57.786 33.333 30.11 10.36 0.00 2.57
5174 5595 6.321181 AGAAACAGATCAAAAGGTAAGTTGCA 59.679 34.615 0.00 0.00 0.00 4.08
5351 5773 0.104120 CATGCACTGCCATCCCATTG 59.896 55.000 0.00 0.00 0.00 2.82
5396 5818 4.141181 TGTTCCCCCATATCCAGATTCAAG 60.141 45.833 0.00 0.00 0.00 3.02
5477 5899 6.511444 GCTCTGAATGTGATGAACTTGATAGC 60.511 42.308 0.00 0.00 0.00 2.97
5483 5905 4.082895 GCTTGCTCTGAATGTGATGAACTT 60.083 41.667 0.00 0.00 0.00 2.66
5505 5927 8.515414 AGATCTTTCTACACCATTAGTTTTTGC 58.485 33.333 0.00 0.00 0.00 3.68
5677 6099 8.647143 AAACATATTTGACAAAAGTGGTTCAG 57.353 30.769 4.41 0.00 0.00 3.02
5831 6258 4.503741 TTGCATCTACCAACTTCAAAGC 57.496 40.909 0.00 0.00 0.00 3.51
5850 6277 6.090898 CAGTGAAAGGAAGTCGGTAACTATTG 59.909 42.308 0.00 0.00 37.17 1.90
5893 6320 6.978080 TGAGAAGTTGGCAAAGTAAATGAAAC 59.022 34.615 0.00 0.00 0.00 2.78
6015 6442 3.069016 CCGTCCCATAATGCACTAGTGTA 59.931 47.826 23.44 20.06 0.00 2.90
6016 6443 2.158957 CCGTCCCATAATGCACTAGTGT 60.159 50.000 23.44 7.20 0.00 3.55
6017 6444 2.102420 TCCGTCCCATAATGCACTAGTG 59.898 50.000 18.93 18.93 0.00 2.74
6042 6469 9.594038 CATTTATTGATTCGGTAGGAATTTACG 57.406 33.333 0.00 0.00 45.33 3.18
6090 6518 3.499918 AGACATTTGGTTGCTCTCTTTCG 59.500 43.478 0.00 0.00 0.00 3.46
6133 6561 4.510167 AGTATCAGGTTGGGATTTCCTG 57.490 45.455 4.30 4.30 46.94 3.86
6134 6562 4.790790 AGAAGTATCAGGTTGGGATTTCCT 59.209 41.667 0.00 0.00 36.20 3.36
6177 6605 6.119536 AGTAGTGGCGAAAAATCATATTCCA 58.880 36.000 0.00 0.00 0.00 3.53
6284 6714 8.876275 TCGTAACTACTATTGTTTTTGACTGT 57.124 30.769 0.00 0.00 0.00 3.55
6330 6763 4.048504 GGTATTGTTGTCCACTGTTTTGC 58.951 43.478 0.00 0.00 0.00 3.68
6424 6857 2.262915 CGCCGGCAGAGAGAACTT 59.737 61.111 28.98 0.00 0.00 2.66
6961 7394 5.084519 AGATTGATTATTCCATGGCAGCAT 58.915 37.500 6.96 0.00 0.00 3.79
6992 8240 1.081892 CGGTGAGCAATCCACAGAAG 58.918 55.000 0.00 0.00 36.31 2.85
6993 8241 0.321564 CCGGTGAGCAATCCACAGAA 60.322 55.000 0.00 0.00 36.31 3.02
6995 8243 2.401766 GCCGGTGAGCAATCCACAG 61.402 63.158 1.90 0.00 36.31 3.66
7105 8359 3.918253 GAGTTGGCGGCCATGGTCA 62.918 63.158 24.49 4.01 31.53 4.02
7234 8488 3.006728 TCTTACAGGTGGGGCCCG 61.007 66.667 19.83 5.76 38.26 6.13
7305 8559 1.135575 CCTTCGACAATTTGCCTCTGC 60.136 52.381 0.00 0.00 38.26 4.26
7396 8650 7.776107 TGCCTCATATGAGATATTACTAGCAC 58.224 38.462 30.40 6.87 44.74 4.40
7415 8669 5.363101 CAGCTAAATCATTAGTCTGCCTCA 58.637 41.667 0.00 0.00 40.59 3.86
7607 8861 6.286758 AGGTTCAGTATAGCAATCTGTGATG 58.713 40.000 0.00 0.00 0.00 3.07
7611 8865 7.268586 CAGTAAGGTTCAGTATAGCAATCTGT 58.731 38.462 0.00 0.00 0.00 3.41
7696 8950 7.548075 ACCGTAGACTGAACCATATTTTAACAG 59.452 37.037 0.00 0.00 0.00 3.16
7705 8959 4.084287 ACTGAACCGTAGACTGAACCATA 58.916 43.478 0.00 0.00 0.00 2.74
7779 9033 0.531532 CAGGCAGCGTATCTCTTGGG 60.532 60.000 0.00 0.00 0.00 4.12
7843 9097 0.389166 CTCGGTGACCAGCTCAGTTC 60.389 60.000 1.11 0.00 0.00 3.01
7946 9200 6.293626 CGGAACTTGCTGCATATAAAGCTATT 60.294 38.462 1.84 2.89 40.21 1.73
8023 9277 3.057174 AGTTCTACGCTCAAGGAGACAAG 60.057 47.826 0.00 0.00 0.00 3.16
8026 9280 2.229302 ACAGTTCTACGCTCAAGGAGAC 59.771 50.000 0.00 0.00 0.00 3.36
8235 9493 0.809241 CGCATCTCCTGAGGACTTGC 60.809 60.000 16.95 16.95 33.64 4.01
8277 9535 9.276590 CAATTTGCTATATCTACTTCACATGGA 57.723 33.333 0.00 0.00 0.00 3.41
8331 9589 5.647658 TCTGACAAGAGTTGTGAATGTGTTT 59.352 36.000 0.00 0.00 45.52 2.83
8366 9624 5.727279 TCCTAACCCACAATATACAGGTGAA 59.273 40.000 0.00 0.00 34.52 3.18
8391 9649 0.721718 GACATGAGCACAGCCGTTAC 59.278 55.000 0.00 0.00 0.00 2.50
8470 9728 3.140325 TCTTCAAAATGGCGGAAGAGT 57.860 42.857 0.00 0.00 41.38 3.24
8541 9799 9.515020 TTTTGTTTTTGTGAATGTAAGCTAGAG 57.485 29.630 0.00 0.00 0.00 2.43
8559 9909 9.110502 TCTAACCTGTTTGTTTTGTTTTGTTTT 57.889 25.926 0.00 0.00 0.00 2.43
8667 10017 7.856145 TGAATTGCAGTTTATTTTGGTTTGT 57.144 28.000 0.00 0.00 0.00 2.83
8683 10033 2.429971 TCTTGGCTTGTGTTGAATTGCA 59.570 40.909 0.00 0.00 0.00 4.08
8709 10059 5.680619 TGGCCTGTGTATGAATAGGTAAAG 58.319 41.667 3.32 0.00 32.85 1.85
8716 10066 8.601546 TCATTATGTATGGCCTGTGTATGAATA 58.398 33.333 3.32 0.00 34.85 1.75
8728 10078 9.410556 GTGTATTTTGATTCATTATGTATGGCC 57.589 33.333 0.00 0.00 34.85 5.36
8748 10098 3.211045 ACGAGCACAACAAAGGTGTATT 58.789 40.909 0.00 0.00 36.80 1.89
8749 10099 2.846193 ACGAGCACAACAAAGGTGTAT 58.154 42.857 0.00 0.00 36.80 2.29
8750 10100 2.319136 ACGAGCACAACAAAGGTGTA 57.681 45.000 0.00 0.00 36.80 2.90
8751 10101 1.132262 CAACGAGCACAACAAAGGTGT 59.868 47.619 0.00 0.00 40.75 4.16
8768 10118 3.128242 CCAACAAGCAGATGGAGATCAAC 59.872 47.826 0.00 0.00 42.49 3.18
8790 10140 3.186613 GGATGACGAAAGAAGTGGTTCAC 59.813 47.826 0.00 0.00 34.82 3.18
8827 10177 6.231211 GGACACTAGTTTCTTGGATGAAGAA 58.769 40.000 8.85 0.00 46.93 2.52
8852 10202 1.202348 AGAGTCGAGGATCATGTTGCG 60.202 52.381 0.00 0.00 33.17 4.85
8869 10219 3.759086 GGCTTTTCTTTTACCAGGGAGAG 59.241 47.826 0.00 0.00 0.00 3.20
8870 10220 3.139397 TGGCTTTTCTTTTACCAGGGAGA 59.861 43.478 0.00 0.00 0.00 3.71
8893 10245 1.546029 TGGTCACAGAGTCAAGGATCG 59.454 52.381 0.00 0.00 0.00 3.69
8982 10335 7.393234 ACGGATATGGAGAAGTGAAATGAAAAA 59.607 33.333 0.00 0.00 0.00 1.94
9003 10356 4.899502 ACATTGAAAGTCAGAGAACGGAT 58.100 39.130 0.00 0.00 0.00 4.18
9006 10359 5.435557 GTGAACATTGAAAGTCAGAGAACG 58.564 41.667 0.00 0.00 0.00 3.95
9007 10360 5.529060 AGGTGAACATTGAAAGTCAGAGAAC 59.471 40.000 0.00 0.00 0.00 3.01
9009 10362 5.296151 AGGTGAACATTGAAAGTCAGAGA 57.704 39.130 0.00 0.00 0.00 3.10
9015 10368 3.756117 GAGGGAGGTGAACATTGAAAGT 58.244 45.455 0.00 0.00 0.00 2.66
9018 10371 1.610624 GCGAGGGAGGTGAACATTGAA 60.611 52.381 0.00 0.00 0.00 2.69
9033 10386 0.539051 AATTGAGAGAGGGTGCGAGG 59.461 55.000 0.00 0.00 0.00 4.63
9049 10402 6.294955 GCAAAAAGAGAGGATGGAGTTCAATT 60.295 38.462 0.00 0.00 0.00 2.32
9110 10463 4.879197 AAATGCAAAAGAAAGGGAGGAG 57.121 40.909 0.00 0.00 0.00 3.69
9111 10464 4.653341 TGAAAATGCAAAAGAAAGGGAGGA 59.347 37.500 0.00 0.00 0.00 3.71
9113 10466 6.225318 TGATGAAAATGCAAAAGAAAGGGAG 58.775 36.000 0.00 0.00 0.00 4.30
9114 10467 6.172136 TGATGAAAATGCAAAAGAAAGGGA 57.828 33.333 0.00 0.00 0.00 4.20
9115 10468 6.864360 TTGATGAAAATGCAAAAGAAAGGG 57.136 33.333 0.00 0.00 0.00 3.95
9117 10470 7.738609 CGACATTGATGAAAATGCAAAAGAAAG 59.261 33.333 0.00 0.00 40.54 2.62
9167 10520 2.431782 GCAAATTGCCTACCACATGGAT 59.568 45.455 6.72 0.00 37.42 3.41
9204 10557 1.407575 GGGAGAAGGAAAGGCTAGTGC 60.408 57.143 0.00 0.00 38.76 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.