Multiple sequence alignment - TraesCS4A01G138300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G138300 chr4A 100.000 2768 0 0 1 2768 203470261 203473028 0.000000e+00 5112
1 TraesCS4A01G138300 chr4A 94.495 218 12 0 2435 2652 213628608 213628825 1.230000e-88 337
2 TraesCS4A01G138300 chr4A 92.857 126 9 0 2643 2768 213628780 213628905 1.690000e-42 183
3 TraesCS4A01G138300 chr2D 91.735 1597 112 11 506 2085 283963753 283965346 0.000000e+00 2200
4 TraesCS4A01G138300 chr5B 94.269 1047 54 5 1164 2204 691532682 691531636 0.000000e+00 1596
5 TraesCS4A01G138300 chr5B 90.736 421 23 7 4 408 10092543 10092123 5.210000e-152 547
6 TraesCS4A01G138300 chr5B 87.907 430 37 9 456 883 691533939 691533523 2.480000e-135 492
7 TraesCS4A01G138300 chr5B 87.923 414 36 8 466 877 499900254 499899853 2.490000e-130 475
8 TraesCS4A01G138300 chr5B 96.319 163 6 0 2422 2584 16247336 16247174 4.540000e-68 268
9 TraesCS4A01G138300 chr1A 93.893 1048 56 7 1164 2204 481248484 481249530 0.000000e+00 1574
10 TraesCS4A01G138300 chr1A 92.462 1048 72 6 1164 2204 406349912 406350959 0.000000e+00 1491
11 TraesCS4A01G138300 chr1A 88.409 880 66 17 1 860 481247177 481248040 0.000000e+00 1027
12 TraesCS4A01G138300 chr1A 93.578 218 14 0 2435 2652 536834869 536834652 2.660000e-85 326
13 TraesCS4A01G138300 chr1A 94.444 126 7 0 2643 2768 536834697 536834572 7.820000e-46 195
14 TraesCS4A01G138300 chr4B 92.646 1047 71 5 1164 2204 609817926 609816880 0.000000e+00 1502
15 TraesCS4A01G138300 chr4B 84.055 947 118 19 1125 2041 667417399 667416456 0.000000e+00 881
16 TraesCS4A01G138300 chr4B 86.939 490 51 7 378 860 609819266 609818783 3.140000e-149 538
17 TraesCS4A01G138300 chr4B 84.035 570 54 23 144 697 668536899 668536351 5.290000e-142 514
18 TraesCS4A01G138300 chr4B 83.831 569 56 20 144 697 669495970 669495423 2.460000e-140 508
19 TraesCS4A01G138300 chr4B 83.511 564 58 21 144 691 668917700 668917156 6.890000e-136 494
20 TraesCS4A01G138300 chr4B 93.304 224 14 1 2435 2657 604277180 604277403 2.060000e-86 329
21 TraesCS4A01G138300 chr4B 87.692 260 24 5 603 860 668536354 668536101 2.080000e-76 296
22 TraesCS4A01G138300 chr4B 87.308 260 25 5 603 860 669495426 669495173 9.700000e-75 291
23 TraesCS4A01G138300 chr4B 96.933 163 5 0 2422 2584 569776794 569776632 9.770000e-70 274
24 TraesCS4A01G138300 chr4B 97.500 160 4 0 2422 2581 618096679 618096838 9.770000e-70 274
25 TraesCS4A01G138300 chr4B 92.857 126 9 0 2643 2768 592718185 592718060 1.690000e-42 183
26 TraesCS4A01G138300 chr4B 92.857 126 9 0 2643 2768 604277352 604277477 1.690000e-42 183
27 TraesCS4A01G138300 chr3B 92.995 985 63 5 1164 2142 811657939 811656955 0.000000e+00 1432
28 TraesCS4A01G138300 chr3B 84.593 688 64 26 147 816 811659488 811658825 0.000000e+00 645
29 TraesCS4A01G138300 chr3B 90.736 421 23 6 4 408 164257056 164256636 5.210000e-152 547
30 TraesCS4A01G138300 chr3B 90.670 418 28 6 1 408 19680559 19680143 1.870000e-151 545
31 TraesCS4A01G138300 chr3B 92.857 126 9 0 2643 2768 805914770 805914645 1.690000e-42 183
32 TraesCS4A01G138300 chr5D 89.969 977 89 8 589 1558 392944369 392945343 0.000000e+00 1253
33 TraesCS4A01G138300 chr5D 94.565 184 10 0 2422 2605 392945773 392945956 4.510000e-73 285
34 TraesCS4A01G138300 chrUn 86.628 860 87 17 1204 2041 30108379 30109232 0.000000e+00 926
35 TraesCS4A01G138300 chr6A 94.455 523 27 2 1683 2204 44076433 44076954 0.000000e+00 804
36 TraesCS4A01G138300 chr6A 90.736 421 23 11 4 408 57135346 57134926 5.210000e-152 547
37 TraesCS4A01G138300 chr6A 89.930 427 29 7 1 414 128941403 128940978 3.140000e-149 538
38 TraesCS4A01G138300 chr6A 94.954 218 11 0 2435 2652 99868813 99868596 2.640000e-90 342
39 TraesCS4A01G138300 chr6A 94.444 126 7 0 2643 2768 99868641 99868516 7.820000e-46 195
40 TraesCS4A01G138300 chr7A 91.607 417 23 6 1 405 399448988 399449404 1.440000e-157 566
41 TraesCS4A01G138300 chr3D 91.489 423 19 7 1 408 494415851 494416271 1.440000e-157 566
42 TraesCS4A01G138300 chr3D 92.857 224 15 1 2435 2657 30774037 30774260 9.560000e-85 324
43 TraesCS4A01G138300 chr3D 92.800 125 9 0 2643 2767 30774209 30774333 6.090000e-42 182
44 TraesCS4A01G138300 chr3D 91.262 103 9 0 2105 2207 529248523 529248421 1.030000e-29 141
45 TraesCS4A01G138300 chr6B 90.952 420 24 8 1 406 686466618 686467037 1.120000e-153 553
46 TraesCS4A01G138300 chr7B 90.521 422 23 6 1 405 469016272 469016693 2.420000e-150 542
47 TraesCS4A01G138300 chr7B 96.319 163 6 0 2422 2584 277068181 277068019 4.540000e-68 268
48 TraesCS4A01G138300 chr5A 93.694 222 14 0 2435 2656 499095894 499096115 1.590000e-87 333
49 TraesCS4A01G138300 chr5A 92.857 126 9 0 2643 2768 499096066 499096191 1.690000e-42 183
50 TraesCS4A01G138300 chr2B 95.652 184 8 0 2422 2605 67123787 67123970 2.080000e-76 296
51 TraesCS4A01G138300 chr2B 95.604 182 8 0 2424 2605 47108380 47108199 2.700000e-75 292
52 TraesCS4A01G138300 chr1B 96.933 163 5 0 2422 2584 683276343 683276181 9.770000e-70 274
53 TraesCS4A01G138300 chr4D 90.291 103 10 0 2105 2207 140009689 140009587 4.810000e-28 135
54 TraesCS4A01G138300 chr2A 86.154 130 8 2 2643 2768 668680060 668680183 6.220000e-27 132


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G138300 chr4A 203470261 203473028 2767 False 5112.0 5112 100.0000 1 2768 1 chr4A.!!$F1 2767
1 TraesCS4A01G138300 chr2D 283963753 283965346 1593 False 2200.0 2200 91.7350 506 2085 1 chr2D.!!$F1 1579
2 TraesCS4A01G138300 chr5B 691531636 691533939 2303 True 1044.0 1596 91.0880 456 2204 2 chr5B.!!$R4 1748
3 TraesCS4A01G138300 chr1A 406349912 406350959 1047 False 1491.0 1491 92.4620 1164 2204 1 chr1A.!!$F1 1040
4 TraesCS4A01G138300 chr1A 481247177 481249530 2353 False 1300.5 1574 91.1510 1 2204 2 chr1A.!!$F2 2203
5 TraesCS4A01G138300 chr4B 609816880 609819266 2386 True 1020.0 1502 89.7925 378 2204 2 chr4B.!!$R5 1826
6 TraesCS4A01G138300 chr4B 667416456 667417399 943 True 881.0 881 84.0550 1125 2041 1 chr4B.!!$R3 916
7 TraesCS4A01G138300 chr4B 668917156 668917700 544 True 494.0 494 83.5110 144 691 1 chr4B.!!$R4 547
8 TraesCS4A01G138300 chr4B 668536101 668536899 798 True 405.0 514 85.8635 144 860 2 chr4B.!!$R6 716
9 TraesCS4A01G138300 chr4B 669495173 669495970 797 True 399.5 508 85.5695 144 860 2 chr4B.!!$R7 716
10 TraesCS4A01G138300 chr3B 811656955 811659488 2533 True 1038.5 1432 88.7940 147 2142 2 chr3B.!!$R4 1995
11 TraesCS4A01G138300 chr5D 392944369 392945956 1587 False 769.0 1253 92.2670 589 2605 2 chr5D.!!$F1 2016
12 TraesCS4A01G138300 chrUn 30108379 30109232 853 False 926.0 926 86.6280 1204 2041 1 chrUn.!!$F1 837
13 TraesCS4A01G138300 chr6A 44076433 44076954 521 False 804.0 804 94.4550 1683 2204 1 chr6A.!!$F1 521

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
242 248 0.167908 GCGGATCATGCACGAAACAA 59.832 50.0 4.46 0.0 0.00 2.83 F
860 984 0.168348 ACAACGATGACGAGGACGAG 59.832 55.0 0.00 0.0 42.66 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1638 2469 0.179020 TGATGCCCGATTCACCATCC 60.179 55.0 0.00 0.00 34.61 3.51 R
2366 3201 0.249955 CAAGGGCGGCCATTTCAAAT 59.750 50.0 31.59 3.02 0.00 2.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
204 210 8.547894 GTCATAATGTTGTATTGCGTTCTGATA 58.452 33.333 0.00 0.00 0.00 2.15
242 248 0.167908 GCGGATCATGCACGAAACAA 59.832 50.000 4.46 0.00 0.00 2.83
259 265 1.916777 AACGTTGGATCCTCCCGGT 60.917 57.895 14.23 8.14 35.03 5.28
327 333 2.074576 GGCGAAACCCTAACTCTGTTC 58.925 52.381 0.00 0.00 0.00 3.18
332 338 3.277416 AACCCTAACTCTGTTCTCCCT 57.723 47.619 0.00 0.00 0.00 4.20
375 390 2.378886 TCCTTTCTTTCTTTCCCTCCCC 59.621 50.000 0.00 0.00 0.00 4.81
407 422 2.844839 CAGATCCCCCTCGTCCCC 60.845 72.222 0.00 0.00 0.00 4.81
408 423 3.036959 AGATCCCCCTCGTCCCCT 61.037 66.667 0.00 0.00 0.00 4.79
411 426 2.891307 GATCCCCCTCGTCCCCTTCA 62.891 65.000 0.00 0.00 0.00 3.02
414 429 2.444256 CCCCTCGTCCCCTTCATCC 61.444 68.421 0.00 0.00 0.00 3.51
415 430 2.444256 CCCTCGTCCCCTTCATCCC 61.444 68.421 0.00 0.00 0.00 3.85
416 431 1.383248 CCTCGTCCCCTTCATCCCT 60.383 63.158 0.00 0.00 0.00 4.20
420 440 1.689582 GTCCCCTTCATCCCTCGGT 60.690 63.158 0.00 0.00 0.00 4.69
497 517 4.148825 GGTCATCGCGCTGGAGGT 62.149 66.667 10.42 0.00 0.00 3.85
519 539 1.005630 ACTCCTGCTGCGTCTTCAC 60.006 57.895 0.00 0.00 0.00 3.18
539 559 0.518764 CGTCTTCTCCTTCGTCGTCG 60.519 60.000 0.00 0.00 38.55 5.12
591 611 2.577059 GGCGATGAGTTCCACCGA 59.423 61.111 0.00 0.00 0.00 4.69
665 686 2.764547 GGCCGGGCTCTAGTTCCT 60.765 66.667 22.87 0.00 0.00 3.36
669 690 1.321074 CCGGGCTCTAGTTCCTCGTT 61.321 60.000 0.00 0.00 0.00 3.85
674 695 0.895530 CTCTAGTTCCTCGTTGGCCA 59.104 55.000 0.00 0.00 35.26 5.36
697 808 4.451150 CGCGCTACCTCAAGGCCA 62.451 66.667 5.01 0.00 39.32 5.36
703 814 0.393537 CTACCTCAAGGCCAGCAAGG 60.394 60.000 5.01 8.80 39.32 3.61
747 858 3.077695 TCCTTGTCTCTACTTCCCCTTCT 59.922 47.826 0.00 0.00 0.00 2.85
789 900 6.158871 TCCTCTCTCTACTTCCTTGTCTGATA 59.841 42.308 0.00 0.00 0.00 2.15
860 984 0.168348 ACAACGATGACGAGGACGAG 59.832 55.000 0.00 0.00 42.66 4.18
861 985 0.523546 CAACGATGACGAGGACGAGG 60.524 60.000 0.00 0.00 42.66 4.63
862 986 0.675837 AACGATGACGAGGACGAGGA 60.676 55.000 0.00 0.00 42.66 3.71
863 987 1.352404 CGATGACGAGGACGAGGAC 59.648 63.158 0.00 0.00 42.66 3.85
864 988 1.366854 CGATGACGAGGACGAGGACA 61.367 60.000 0.00 0.00 42.66 4.02
865 989 0.809385 GATGACGAGGACGAGGACAA 59.191 55.000 0.00 0.00 42.66 3.18
877 1001 0.615331 GAGGACAACCAGGATCTGCA 59.385 55.000 0.00 0.00 38.94 4.41
903 1027 2.224066 CCCCTGAGAAAATCGACGCTAT 60.224 50.000 0.00 0.00 0.00 2.97
911 1071 7.827701 TGAGAAAATCGACGCTATATATCCTT 58.172 34.615 0.00 0.00 0.00 3.36
916 1076 6.694877 ATCGACGCTATATATCCTTTGCTA 57.305 37.500 0.00 0.00 0.00 3.49
935 1095 4.202357 TGCTACTGTTTGATTGACCTCTGT 60.202 41.667 0.00 0.00 0.00 3.41
990 1352 0.539986 GCTTGGGTTCCGTCCATCTA 59.460 55.000 0.00 0.00 33.82 1.98
1095 1763 5.324697 GTGAACTGCTGTTATTTCGATTCC 58.675 41.667 9.14 0.00 36.39 3.01
1102 1770 4.380444 GCTGTTATTTCGATTCCCTTGCAA 60.380 41.667 0.00 0.00 0.00 4.08
1168 1872 6.292811 GCAGATGATTCAGCTAGAAAAGTAGC 60.293 42.308 3.75 0.00 45.06 3.58
1199 1903 5.696270 CCAAGCAAATAGATCGTGTATGCTA 59.304 40.000 13.69 0.00 41.42 3.49
1246 1958 6.039047 GGATGTCTAGTATTACTGTCGGACAA 59.961 42.308 12.54 0.00 32.97 3.18
1265 1985 6.042143 GGACAACTGTTTGATGTGATTTTGT 58.958 36.000 0.00 0.00 36.48 2.83
1367 2098 1.504359 ACGACACCCACAACATTACG 58.496 50.000 0.00 0.00 0.00 3.18
1370 2101 1.458064 GACACCCACAACATTACGTCG 59.542 52.381 0.00 0.00 0.00 5.12
1518 2253 4.527427 GCCTCTAATAACCTCGGGTCTAAT 59.473 45.833 0.00 0.00 33.12 1.73
1638 2469 1.303236 TGATGGGGTTGGTGCTTCG 60.303 57.895 0.00 0.00 0.00 3.79
1655 2486 1.227943 CGGATGGTGAATCGGGCAT 60.228 57.895 0.00 0.00 35.99 4.40
1696 2527 0.537188 TCCGAAGCATGGAAGAGGAC 59.463 55.000 0.00 0.00 30.98 3.85
1805 2637 6.472163 GTGTATGTTTTGTTCAGTTTGACAGG 59.528 38.462 0.00 0.00 0.00 4.00
1830 2662 6.977213 AGTTTAGAATTGTTATGCGGTGTTT 58.023 32.000 0.00 0.00 0.00 2.83
1844 2676 2.157668 CGGTGTTTGCTAGCTGTTAGTG 59.842 50.000 17.23 0.00 0.00 2.74
1867 2699 6.907212 GTGTGATATTAATTCAGAAGCGTTGG 59.093 38.462 0.00 0.00 0.00 3.77
1893 2725 7.825331 TTTCCTTGGTATATGTTGTGTTCAA 57.175 32.000 0.00 0.00 0.00 2.69
1903 2735 3.023119 TGTTGTGTTCAATTCTGGCAGT 58.977 40.909 15.27 0.00 35.92 4.40
2109 2944 0.515127 TTGTGCCATGCTTCGTTACG 59.485 50.000 0.00 0.00 0.00 3.18
2116 2951 2.858344 CCATGCTTCGTTACGAACTAGG 59.142 50.000 16.56 11.67 41.05 3.02
2118 2953 2.937591 TGCTTCGTTACGAACTAGGTG 58.062 47.619 16.56 6.93 41.05 4.00
2127 2962 5.970023 CGTTACGAACTAGGTGGAGATAAAG 59.030 44.000 0.00 0.00 0.00 1.85
2208 3043 1.597742 GCCTGTTGCTGAACTGAAGA 58.402 50.000 0.00 0.00 36.87 2.87
2209 3044 2.157738 GCCTGTTGCTGAACTGAAGAT 58.842 47.619 0.00 0.00 36.87 2.40
2210 3045 2.095364 GCCTGTTGCTGAACTGAAGATG 60.095 50.000 0.00 0.00 36.87 2.90
2211 3046 3.144506 CCTGTTGCTGAACTGAAGATGT 58.855 45.455 0.00 0.00 33.90 3.06
2212 3047 3.567164 CCTGTTGCTGAACTGAAGATGTT 59.433 43.478 0.00 0.00 33.90 2.71
2213 3048 4.320057 CCTGTTGCTGAACTGAAGATGTTC 60.320 45.833 0.00 0.00 42.77 3.18
2214 3049 4.454678 TGTTGCTGAACTGAAGATGTTCT 58.545 39.130 4.03 0.00 42.86 3.01
2215 3050 4.274214 TGTTGCTGAACTGAAGATGTTCTG 59.726 41.667 7.79 7.79 42.86 3.02
2216 3051 4.341366 TGCTGAACTGAAGATGTTCTGA 57.659 40.909 15.12 0.00 42.21 3.27
2217 3052 4.903054 TGCTGAACTGAAGATGTTCTGAT 58.097 39.130 15.12 4.41 42.21 2.90
2218 3053 5.311265 TGCTGAACTGAAGATGTTCTGATT 58.689 37.500 15.12 6.72 42.21 2.57
2219 3054 5.410746 TGCTGAACTGAAGATGTTCTGATTC 59.589 40.000 15.12 13.76 42.21 2.52
2220 3055 5.410746 GCTGAACTGAAGATGTTCTGATTCA 59.589 40.000 15.12 16.52 42.21 2.57
2226 3061 6.602410 TGAAGATGTTCTGATTCAGAGACT 57.398 37.500 15.59 10.89 41.75 3.24
2227 3062 7.709149 TGAAGATGTTCTGATTCAGAGACTA 57.291 36.000 15.59 5.36 41.75 2.59
2228 3063 7.770201 TGAAGATGTTCTGATTCAGAGACTAG 58.230 38.462 15.59 0.00 41.75 2.57
2229 3064 6.713762 AGATGTTCTGATTCAGAGACTAGG 57.286 41.667 15.59 0.00 41.75 3.02
2230 3065 6.194235 AGATGTTCTGATTCAGAGACTAGGT 58.806 40.000 15.59 6.51 41.75 3.08
2231 3066 5.651387 TGTTCTGATTCAGAGACTAGGTG 57.349 43.478 15.59 0.00 41.75 4.00
2232 3067 5.325239 TGTTCTGATTCAGAGACTAGGTGA 58.675 41.667 15.59 0.00 41.75 4.02
2233 3068 5.184096 TGTTCTGATTCAGAGACTAGGTGAC 59.816 44.000 15.59 8.92 41.75 3.67
2234 3069 4.923415 TCTGATTCAGAGACTAGGTGACA 58.077 43.478 12.38 0.00 35.39 3.58
2235 3070 4.946772 TCTGATTCAGAGACTAGGTGACAG 59.053 45.833 12.38 0.00 35.39 3.51
2236 3071 4.667573 TGATTCAGAGACTAGGTGACAGT 58.332 43.478 0.00 0.00 0.00 3.55
2237 3072 4.460731 TGATTCAGAGACTAGGTGACAGTG 59.539 45.833 0.00 0.00 0.00 3.66
2238 3073 2.163509 TCAGAGACTAGGTGACAGTGC 58.836 52.381 0.00 0.00 0.00 4.40
2239 3074 2.166829 CAGAGACTAGGTGACAGTGCT 58.833 52.381 0.00 0.00 0.00 4.40
2240 3075 2.560542 CAGAGACTAGGTGACAGTGCTT 59.439 50.000 0.00 0.00 0.00 3.91
2241 3076 3.006323 CAGAGACTAGGTGACAGTGCTTT 59.994 47.826 0.00 0.00 0.00 3.51
2242 3077 3.643792 AGAGACTAGGTGACAGTGCTTTT 59.356 43.478 0.00 0.00 0.00 2.27
2243 3078 4.101741 AGAGACTAGGTGACAGTGCTTTTT 59.898 41.667 0.00 0.00 0.00 1.94
2244 3079 4.130118 AGACTAGGTGACAGTGCTTTTTG 58.870 43.478 0.00 0.00 0.00 2.44
2245 3080 4.127171 GACTAGGTGACAGTGCTTTTTGA 58.873 43.478 0.00 0.00 0.00 2.69
2246 3081 4.523083 ACTAGGTGACAGTGCTTTTTGAA 58.477 39.130 0.00 0.00 0.00 2.69
2247 3082 5.133221 ACTAGGTGACAGTGCTTTTTGAAT 58.867 37.500 0.00 0.00 0.00 2.57
2248 3083 5.594317 ACTAGGTGACAGTGCTTTTTGAATT 59.406 36.000 0.00 0.00 0.00 2.17
2249 3084 5.343307 AGGTGACAGTGCTTTTTGAATTT 57.657 34.783 0.00 0.00 0.00 1.82
2250 3085 5.733676 AGGTGACAGTGCTTTTTGAATTTT 58.266 33.333 0.00 0.00 0.00 1.82
2251 3086 6.172630 AGGTGACAGTGCTTTTTGAATTTTT 58.827 32.000 0.00 0.00 0.00 1.94
2252 3087 7.327214 AGGTGACAGTGCTTTTTGAATTTTTA 58.673 30.769 0.00 0.00 0.00 1.52
2253 3088 7.986889 AGGTGACAGTGCTTTTTGAATTTTTAT 59.013 29.630 0.00 0.00 0.00 1.40
2254 3089 8.275632 GGTGACAGTGCTTTTTGAATTTTTATC 58.724 33.333 0.00 0.00 0.00 1.75
2255 3090 9.034544 GTGACAGTGCTTTTTGAATTTTTATCT 57.965 29.630 0.00 0.00 0.00 1.98
2256 3091 9.248291 TGACAGTGCTTTTTGAATTTTTATCTC 57.752 29.630 0.00 0.00 0.00 2.75
2257 3092 9.248291 GACAGTGCTTTTTGAATTTTTATCTCA 57.752 29.630 0.00 0.00 0.00 3.27
2258 3093 9.598517 ACAGTGCTTTTTGAATTTTTATCTCAA 57.401 25.926 0.00 0.00 0.00 3.02
2281 3116 9.142515 TCAATTAACAATGATGAAACATCAAGC 57.857 29.630 16.42 0.00 0.00 4.01
2282 3117 8.927721 CAATTAACAATGATGAAACATCAAGCA 58.072 29.630 16.42 0.64 0.00 3.91
2283 3118 9.491675 AATTAACAATGATGAAACATCAAGCAA 57.508 25.926 16.42 10.81 0.00 3.91
2284 3119 9.661563 ATTAACAATGATGAAACATCAAGCAAT 57.338 25.926 16.42 12.07 0.00 3.56
2288 3123 9.961265 ACAATGATGAAACATCAAGCAATATAG 57.039 29.630 16.42 4.36 0.00 1.31
2325 3160 8.402798 ACATATTGTTCCACTTTATGTTGTGA 57.597 30.769 0.00 0.00 36.38 3.58
2326 3161 8.514594 ACATATTGTTCCACTTTATGTTGTGAG 58.485 33.333 0.00 0.00 36.38 3.51
2327 3162 5.766150 TTGTTCCACTTTATGTTGTGAGG 57.234 39.130 0.00 0.00 36.38 3.86
2328 3163 3.568007 TGTTCCACTTTATGTTGTGAGGC 59.432 43.478 0.00 0.00 36.38 4.70
2329 3164 2.790433 TCCACTTTATGTTGTGAGGCC 58.210 47.619 0.00 0.00 36.38 5.19
2330 3165 1.468520 CCACTTTATGTTGTGAGGCCG 59.531 52.381 0.00 0.00 36.38 6.13
2331 3166 2.151202 CACTTTATGTTGTGAGGCCGT 58.849 47.619 0.00 0.00 36.38 5.68
2332 3167 2.095768 CACTTTATGTTGTGAGGCCGTG 60.096 50.000 0.00 0.00 36.38 4.94
2333 3168 2.224426 ACTTTATGTTGTGAGGCCGTGA 60.224 45.455 0.00 0.00 0.00 4.35
2334 3169 2.093306 TTATGTTGTGAGGCCGTGAG 57.907 50.000 0.00 0.00 0.00 3.51
2335 3170 1.262417 TATGTTGTGAGGCCGTGAGA 58.738 50.000 0.00 0.00 0.00 3.27
2336 3171 0.615331 ATGTTGTGAGGCCGTGAGAT 59.385 50.000 0.00 0.00 0.00 2.75
2337 3172 0.320683 TGTTGTGAGGCCGTGAGATG 60.321 55.000 0.00 0.00 0.00 2.90
2338 3173 1.375908 TTGTGAGGCCGTGAGATGC 60.376 57.895 0.00 0.00 0.00 3.91
2339 3174 2.110757 TTGTGAGGCCGTGAGATGCA 62.111 55.000 0.00 0.00 0.00 3.96
2340 3175 2.103042 GTGAGGCCGTGAGATGCAC 61.103 63.158 0.00 0.00 44.21 4.57
2341 3176 2.285773 TGAGGCCGTGAGATGCACT 61.286 57.895 0.00 0.00 45.49 4.40
2342 3177 1.812922 GAGGCCGTGAGATGCACTG 60.813 63.158 0.00 0.00 45.49 3.66
2343 3178 2.230994 GAGGCCGTGAGATGCACTGA 62.231 60.000 0.00 0.00 45.49 3.41
2344 3179 1.153289 GGCCGTGAGATGCACTGAT 60.153 57.895 0.00 0.00 45.49 2.90
2345 3180 0.745845 GGCCGTGAGATGCACTGATT 60.746 55.000 0.00 0.00 45.49 2.57
2346 3181 1.089920 GCCGTGAGATGCACTGATTT 58.910 50.000 0.00 0.00 45.49 2.17
2347 3182 1.470098 GCCGTGAGATGCACTGATTTT 59.530 47.619 0.00 0.00 45.49 1.82
2348 3183 2.095059 GCCGTGAGATGCACTGATTTTT 60.095 45.455 0.00 0.00 45.49 1.94
2349 3184 3.126858 GCCGTGAGATGCACTGATTTTTA 59.873 43.478 0.00 0.00 45.49 1.52
2350 3185 4.201950 GCCGTGAGATGCACTGATTTTTAT 60.202 41.667 0.00 0.00 45.49 1.40
2351 3186 5.268544 CCGTGAGATGCACTGATTTTTATG 58.731 41.667 0.00 0.00 45.49 1.90
2352 3187 4.731961 CGTGAGATGCACTGATTTTTATGC 59.268 41.667 0.00 0.00 45.49 3.14
2357 3192 4.804868 TGCACTGATTTTTATGCACCAT 57.195 36.364 0.00 0.00 42.92 3.55
2358 3193 5.149973 TGCACTGATTTTTATGCACCATT 57.850 34.783 0.00 0.00 42.92 3.16
2359 3194 5.549347 TGCACTGATTTTTATGCACCATTT 58.451 33.333 0.00 0.00 42.92 2.32
2360 3195 5.638657 TGCACTGATTTTTATGCACCATTTC 59.361 36.000 0.00 0.00 42.92 2.17
2361 3196 5.870978 GCACTGATTTTTATGCACCATTTCT 59.129 36.000 0.00 0.00 38.00 2.52
2362 3197 6.369615 GCACTGATTTTTATGCACCATTTCTT 59.630 34.615 0.00 0.00 38.00 2.52
2363 3198 7.095102 GCACTGATTTTTATGCACCATTTCTTT 60.095 33.333 0.00 0.00 38.00 2.52
2364 3199 8.776470 CACTGATTTTTATGCACCATTTCTTTT 58.224 29.630 0.00 0.00 0.00 2.27
2365 3200 9.995003 ACTGATTTTTATGCACCATTTCTTTTA 57.005 25.926 0.00 0.00 0.00 1.52
2380 3215 5.854431 TTCTTTTAATTTGAAATGGCCGC 57.146 34.783 0.00 0.00 0.00 6.53
2381 3216 4.249661 TCTTTTAATTTGAAATGGCCGCC 58.750 39.130 1.04 1.04 0.00 6.13
2382 3217 2.682155 TTAATTTGAAATGGCCGCCC 57.318 45.000 7.03 0.00 0.00 6.13
2383 3218 1.859302 TAATTTGAAATGGCCGCCCT 58.141 45.000 7.03 0.00 0.00 5.19
2384 3219 0.983467 AATTTGAAATGGCCGCCCTT 59.017 45.000 7.03 0.00 0.00 3.95
2385 3220 0.249955 ATTTGAAATGGCCGCCCTTG 59.750 50.000 7.03 0.00 0.00 3.61
2386 3221 1.825281 TTTGAAATGGCCGCCCTTGG 61.825 55.000 7.03 0.00 0.00 3.61
2396 3231 3.783165 GCCCTTGGCTCTTGCTTT 58.217 55.556 0.00 0.00 46.69 3.51
2397 3232 2.052779 GCCCTTGGCTCTTGCTTTT 58.947 52.632 0.00 0.00 46.69 2.27
2398 3233 0.320160 GCCCTTGGCTCTTGCTTTTG 60.320 55.000 0.00 0.00 46.69 2.44
2399 3234 1.043022 CCCTTGGCTCTTGCTTTTGT 58.957 50.000 0.00 0.00 39.59 2.83
2400 3235 1.413812 CCCTTGGCTCTTGCTTTTGTT 59.586 47.619 0.00 0.00 39.59 2.83
2401 3236 2.546584 CCCTTGGCTCTTGCTTTTGTTC 60.547 50.000 0.00 0.00 39.59 3.18
2402 3237 2.101249 CCTTGGCTCTTGCTTTTGTTCA 59.899 45.455 0.00 0.00 39.59 3.18
2403 3238 3.430651 CCTTGGCTCTTGCTTTTGTTCAA 60.431 43.478 0.00 0.00 39.59 2.69
2404 3239 4.374399 CTTGGCTCTTGCTTTTGTTCAAT 58.626 39.130 0.00 0.00 39.59 2.57
2405 3240 3.719924 TGGCTCTTGCTTTTGTTCAATG 58.280 40.909 0.00 0.00 39.59 2.82
2406 3241 3.132646 TGGCTCTTGCTTTTGTTCAATGT 59.867 39.130 0.00 0.00 39.59 2.71
2407 3242 4.340666 TGGCTCTTGCTTTTGTTCAATGTA 59.659 37.500 0.00 0.00 39.59 2.29
2408 3243 5.010922 TGGCTCTTGCTTTTGTTCAATGTAT 59.989 36.000 0.00 0.00 39.59 2.29
2409 3244 6.208402 TGGCTCTTGCTTTTGTTCAATGTATA 59.792 34.615 0.00 0.00 39.59 1.47
2410 3245 7.093814 TGGCTCTTGCTTTTGTTCAATGTATAT 60.094 33.333 0.00 0.00 39.59 0.86
2411 3246 7.221452 GGCTCTTGCTTTTGTTCAATGTATATG 59.779 37.037 0.00 0.00 39.59 1.78
2412 3247 7.756722 GCTCTTGCTTTTGTTCAATGTATATGT 59.243 33.333 0.00 0.00 36.03 2.29
2413 3248 8.969121 TCTTGCTTTTGTTCAATGTATATGTG 57.031 30.769 0.00 0.00 0.00 3.21
2414 3249 7.541783 TCTTGCTTTTGTTCAATGTATATGTGC 59.458 33.333 0.00 0.00 0.00 4.57
2415 3250 6.923012 TGCTTTTGTTCAATGTATATGTGCT 58.077 32.000 0.00 0.00 0.00 4.40
2416 3251 7.028962 TGCTTTTGTTCAATGTATATGTGCTC 58.971 34.615 0.00 0.00 0.00 4.26
2417 3252 7.094248 TGCTTTTGTTCAATGTATATGTGCTCT 60.094 33.333 0.00 0.00 0.00 4.09
2418 3253 7.756722 GCTTTTGTTCAATGTATATGTGCTCTT 59.243 33.333 0.00 0.00 0.00 2.85
2419 3254 9.630098 CTTTTGTTCAATGTATATGTGCTCTTT 57.370 29.630 0.00 0.00 0.00 2.52
2420 3255 9.624697 TTTTGTTCAATGTATATGTGCTCTTTC 57.375 29.630 0.00 0.00 0.00 2.62
2421 3256 8.565896 TTGTTCAATGTATATGTGCTCTTTCT 57.434 30.769 0.00 0.00 0.00 2.52
2422 3257 7.977904 TGTTCAATGTATATGTGCTCTTTCTG 58.022 34.615 0.00 0.00 0.00 3.02
2427 3262 9.447040 CAATGTATATGTGCTCTTTCTGATTTG 57.553 33.333 0.00 0.00 0.00 2.32
2437 3272 6.317140 TGCTCTTTCTGATTTGTAAGCATAGG 59.683 38.462 0.00 0.00 33.88 2.57
2451 3286 5.968676 AAGCATAGGTGGTTATAGGTTGA 57.031 39.130 0.00 0.00 43.75 3.18
2530 3365 3.195610 TGTATGTGCTCAGTACCTTCCTG 59.804 47.826 0.00 0.00 0.00 3.86
2555 3390 7.171508 TGTTGTTCTAGTTGCTTACAGAATCTG 59.828 37.037 8.98 8.98 37.52 2.90
2558 3393 5.171476 TCTAGTTGCTTACAGAATCTGTGC 58.829 41.667 24.74 19.99 45.01 4.57
2589 3424 5.984926 CCTTGCAACTTAAATTCTTGCTTGA 59.015 36.000 0.00 0.00 40.81 3.02
2590 3425 6.074142 CCTTGCAACTTAAATTCTTGCTTGAC 60.074 38.462 0.00 0.00 40.81 3.18
2599 3434 8.579850 TTAAATTCTTGCTTGACCTCATGTAT 57.420 30.769 0.00 0.00 0.00 2.29
2605 3440 7.436933 TCTTGCTTGACCTCATGTATAGTATG 58.563 38.462 0.00 0.00 0.00 2.39
2606 3441 6.731292 TGCTTGACCTCATGTATAGTATGT 57.269 37.500 0.00 0.00 0.00 2.29
2607 3442 7.124573 TGCTTGACCTCATGTATAGTATGTT 57.875 36.000 0.00 0.00 0.00 2.71
2608 3443 7.564793 TGCTTGACCTCATGTATAGTATGTTT 58.435 34.615 0.00 0.00 0.00 2.83
2609 3444 7.495606 TGCTTGACCTCATGTATAGTATGTTTG 59.504 37.037 0.00 0.00 0.00 2.93
2610 3445 7.519008 GCTTGACCTCATGTATAGTATGTTTGC 60.519 40.741 0.00 0.00 0.00 3.68
2611 3446 7.124573 TGACCTCATGTATAGTATGTTTGCT 57.875 36.000 0.00 0.00 0.00 3.91
2612 3447 7.210174 TGACCTCATGTATAGTATGTTTGCTC 58.790 38.462 0.00 0.00 0.00 4.26
2613 3448 6.216569 ACCTCATGTATAGTATGTTTGCTCG 58.783 40.000 0.00 0.00 0.00 5.03
2614 3449 6.183360 ACCTCATGTATAGTATGTTTGCTCGT 60.183 38.462 0.00 0.00 0.00 4.18
2615 3450 7.013942 ACCTCATGTATAGTATGTTTGCTCGTA 59.986 37.037 0.00 0.00 0.00 3.43
2616 3451 7.865889 CCTCATGTATAGTATGTTTGCTCGTAA 59.134 37.037 0.00 0.00 0.00 3.18
2617 3452 8.797266 TCATGTATAGTATGTTTGCTCGTAAG 57.203 34.615 0.00 0.00 0.00 2.34
2636 3471 7.433873 CGTAAGAAGTAGTACTCCGAAATTG 57.566 40.000 2.58 0.00 43.02 2.32
2637 3472 7.025963 CGTAAGAAGTAGTACTCCGAAATTGT 58.974 38.462 2.58 0.00 43.02 2.71
2638 3473 8.177663 CGTAAGAAGTAGTACTCCGAAATTGTA 58.822 37.037 2.58 0.00 43.02 2.41
2639 3474 9.283420 GTAAGAAGTAGTACTCCGAAATTGTAC 57.717 37.037 2.58 0.00 37.42 2.90
2640 3475 7.458409 AGAAGTAGTACTCCGAAATTGTACA 57.542 36.000 2.58 0.00 39.02 2.90
2641 3476 7.889469 AGAAGTAGTACTCCGAAATTGTACAA 58.111 34.615 11.41 11.41 39.02 2.41
2642 3477 8.529476 AGAAGTAGTACTCCGAAATTGTACAAT 58.471 33.333 15.47 15.47 39.02 2.71
2643 3478 9.148104 GAAGTAGTACTCCGAAATTGTACAATT 57.852 33.333 24.88 24.88 42.35 2.32
2655 3490 7.856145 AAATTGTACAATTTGGTTGCAAGAA 57.144 28.000 34.67 0.73 45.99 2.52
2656 3491 7.481275 AATTGTACAATTTGGTTGCAAGAAG 57.519 32.000 24.88 0.00 41.69 2.85
2657 3492 5.590530 TGTACAATTTGGTTGCAAGAAGT 57.409 34.783 0.00 0.00 41.69 3.01
2658 3493 6.701145 TGTACAATTTGGTTGCAAGAAGTA 57.299 33.333 0.00 0.00 41.69 2.24
2659 3494 6.734137 TGTACAATTTGGTTGCAAGAAGTAG 58.266 36.000 0.00 0.00 41.69 2.57
2660 3495 5.852282 ACAATTTGGTTGCAAGAAGTAGT 57.148 34.783 0.00 0.00 41.69 2.73
2661 3496 6.952773 ACAATTTGGTTGCAAGAAGTAGTA 57.047 33.333 0.00 0.00 41.69 1.82
2662 3497 6.735130 ACAATTTGGTTGCAAGAAGTAGTAC 58.265 36.000 0.00 0.00 41.69 2.73
2663 3498 5.607119 ATTTGGTTGCAAGAAGTAGTACG 57.393 39.130 0.00 0.00 0.00 3.67
2664 3499 2.409975 TGGTTGCAAGAAGTAGTACGC 58.590 47.619 0.00 0.00 0.00 4.42
2665 3500 1.730612 GGTTGCAAGAAGTAGTACGCC 59.269 52.381 0.00 0.00 0.00 5.68
2666 3501 1.389106 GTTGCAAGAAGTAGTACGCCG 59.611 52.381 0.00 0.00 0.00 6.46
2667 3502 0.883153 TGCAAGAAGTAGTACGCCGA 59.117 50.000 0.00 0.00 0.00 5.54
2668 3503 1.270274 TGCAAGAAGTAGTACGCCGAA 59.730 47.619 0.00 0.00 0.00 4.30
2669 3504 2.288334 TGCAAGAAGTAGTACGCCGAAA 60.288 45.455 0.00 0.00 0.00 3.46
2670 3505 2.928116 GCAAGAAGTAGTACGCCGAAAT 59.072 45.455 0.00 0.00 0.00 2.17
2671 3506 3.370061 GCAAGAAGTAGTACGCCGAAATT 59.630 43.478 0.00 0.00 0.00 1.82
2672 3507 4.724036 GCAAGAAGTAGTACGCCGAAATTG 60.724 45.833 0.00 0.00 0.00 2.32
2673 3508 4.184079 AGAAGTAGTACGCCGAAATTGT 57.816 40.909 0.00 0.00 0.00 2.71
2674 3509 5.314923 AGAAGTAGTACGCCGAAATTGTA 57.685 39.130 0.00 0.00 0.00 2.41
2675 3510 5.098211 AGAAGTAGTACGCCGAAATTGTAC 58.902 41.667 0.00 0.00 38.94 2.90
2676 3511 4.439305 AGTAGTACGCCGAAATTGTACA 57.561 40.909 0.00 0.00 40.64 2.90
2677 3512 4.418392 AGTAGTACGCCGAAATTGTACAG 58.582 43.478 0.00 0.00 40.64 2.74
2678 3513 3.308438 AGTACGCCGAAATTGTACAGT 57.692 42.857 0.00 0.00 40.64 3.55
2679 3514 3.656559 AGTACGCCGAAATTGTACAGTT 58.343 40.909 0.00 0.00 40.64 3.16
2680 3515 4.060205 AGTACGCCGAAATTGTACAGTTT 58.940 39.130 15.40 15.40 40.64 2.66
2681 3516 3.262135 ACGCCGAAATTGTACAGTTTG 57.738 42.857 19.70 11.98 0.00 2.93
2682 3517 2.031508 ACGCCGAAATTGTACAGTTTGG 60.032 45.455 19.70 17.58 0.00 3.28
2683 3518 2.031508 CGCCGAAATTGTACAGTTTGGT 60.032 45.455 19.70 0.00 0.00 3.67
2684 3519 3.549221 CGCCGAAATTGTACAGTTTGGTT 60.549 43.478 19.70 0.00 0.00 3.67
2685 3520 3.733727 GCCGAAATTGTACAGTTTGGTTG 59.266 43.478 19.70 8.82 0.00 3.77
2686 3521 3.733727 CCGAAATTGTACAGTTTGGTTGC 59.266 43.478 19.70 5.45 0.00 4.17
2687 3522 4.355437 CGAAATTGTACAGTTTGGTTGCA 58.645 39.130 19.70 0.00 0.00 4.08
2688 3523 4.800993 CGAAATTGTACAGTTTGGTTGCAA 59.199 37.500 19.70 0.00 0.00 4.08
2689 3524 5.051774 CGAAATTGTACAGTTTGGTTGCAAG 60.052 40.000 19.70 0.00 0.00 4.01
2690 3525 2.861462 TGTACAGTTTGGTTGCAAGC 57.139 45.000 21.51 21.51 0.00 4.01
2691 3526 2.095461 TGTACAGTTTGGTTGCAAGCA 58.905 42.857 26.54 26.54 34.10 3.91
2692 3527 2.493675 TGTACAGTTTGGTTGCAAGCAA 59.506 40.909 33.76 33.76 43.83 3.91
2693 3528 2.298411 ACAGTTTGGTTGCAAGCAAG 57.702 45.000 34.56 27.45 45.75 4.01
2703 3538 1.925229 TGCAAGCAAGCAAACTGAAC 58.075 45.000 0.17 0.00 42.46 3.18
2704 3539 1.477700 TGCAAGCAAGCAAACTGAACT 59.522 42.857 0.17 0.00 42.46 3.01
2705 3540 2.122564 GCAAGCAAGCAAACTGAACTC 58.877 47.619 0.00 0.00 0.00 3.01
2706 3541 2.480073 GCAAGCAAGCAAACTGAACTCA 60.480 45.455 0.00 0.00 0.00 3.41
2707 3542 3.772932 CAAGCAAGCAAACTGAACTCAA 58.227 40.909 0.00 0.00 0.00 3.02
2708 3543 4.365723 CAAGCAAGCAAACTGAACTCAAT 58.634 39.130 0.00 0.00 0.00 2.57
2709 3544 4.660789 AGCAAGCAAACTGAACTCAATT 57.339 36.364 0.00 0.00 0.00 2.32
2710 3545 5.014808 AGCAAGCAAACTGAACTCAATTT 57.985 34.783 0.00 0.00 0.00 1.82
2711 3546 5.422145 AGCAAGCAAACTGAACTCAATTTT 58.578 33.333 0.00 0.00 0.00 1.82
2712 3547 5.521372 AGCAAGCAAACTGAACTCAATTTTC 59.479 36.000 0.00 0.00 0.00 2.29
2713 3548 5.521372 GCAAGCAAACTGAACTCAATTTTCT 59.479 36.000 0.00 0.00 0.00 2.52
2714 3549 6.036408 GCAAGCAAACTGAACTCAATTTTCTT 59.964 34.615 0.00 0.00 31.07 2.52
2715 3550 7.615790 CAAGCAAACTGAACTCAATTTTCTTC 58.384 34.615 0.00 0.00 29.17 2.87
2716 3551 6.276091 AGCAAACTGAACTCAATTTTCTTCC 58.724 36.000 0.00 0.00 0.00 3.46
2717 3552 6.097412 AGCAAACTGAACTCAATTTTCTTCCT 59.903 34.615 0.00 0.00 0.00 3.36
2718 3553 6.758416 GCAAACTGAACTCAATTTTCTTCCTT 59.242 34.615 0.00 0.00 0.00 3.36
2719 3554 7.254218 GCAAACTGAACTCAATTTTCTTCCTTG 60.254 37.037 0.00 0.00 0.00 3.61
2720 3555 5.836347 ACTGAACTCAATTTTCTTCCTTGC 58.164 37.500 0.00 0.00 0.00 4.01
2721 3556 5.360714 ACTGAACTCAATTTTCTTCCTTGCA 59.639 36.000 0.00 0.00 0.00 4.08
2722 3557 6.127366 ACTGAACTCAATTTTCTTCCTTGCAA 60.127 34.615 0.00 0.00 0.00 4.08
2723 3558 6.638610 TGAACTCAATTTTCTTCCTTGCAAA 58.361 32.000 0.00 0.00 0.00 3.68
2724 3559 7.274447 TGAACTCAATTTTCTTCCTTGCAAAT 58.726 30.769 0.00 0.00 0.00 2.32
2725 3560 7.769970 TGAACTCAATTTTCTTCCTTGCAAATT 59.230 29.630 0.00 0.00 30.56 1.82
2726 3561 7.486802 ACTCAATTTTCTTCCTTGCAAATTG 57.513 32.000 0.00 5.28 43.45 2.32
2727 3562 7.274447 ACTCAATTTTCTTCCTTGCAAATTGA 58.726 30.769 14.77 14.77 46.19 2.57
2728 3563 7.769970 ACTCAATTTTCTTCCTTGCAAATTGAA 59.230 29.630 15.81 11.09 46.93 2.69
2729 3564 7.918643 TCAATTTTCTTCCTTGCAAATTGAAC 58.081 30.769 13.71 0.00 45.76 3.18
2730 3565 7.769970 TCAATTTTCTTCCTTGCAAATTGAACT 59.230 29.630 13.71 0.63 45.76 3.01
2731 3566 8.400186 CAATTTTCTTCCTTGCAAATTGAACTT 58.600 29.630 9.57 3.05 44.24 2.66
2732 3567 9.612066 AATTTTCTTCCTTGCAAATTGAACTTA 57.388 25.926 0.00 0.00 29.61 2.24
2733 3568 9.612066 ATTTTCTTCCTTGCAAATTGAACTTAA 57.388 25.926 0.00 0.00 0.00 1.85
2734 3569 9.612066 TTTTCTTCCTTGCAAATTGAACTTAAT 57.388 25.926 0.00 0.00 0.00 1.40
2735 3570 9.612066 TTTCTTCCTTGCAAATTGAACTTAATT 57.388 25.926 0.00 0.00 31.87 1.40
2736 3571 9.612066 TTCTTCCTTGCAAATTGAACTTAATTT 57.388 25.926 0.00 0.00 40.00 1.82
2747 3582 9.476202 AAATTGAACTTAATTTGTACTCCTTGC 57.524 29.630 0.00 0.00 38.46 4.01
2748 3583 7.575414 TTGAACTTAATTTGTACTCCTTGCA 57.425 32.000 0.00 0.00 0.00 4.08
2749 3584 7.575414 TGAACTTAATTTGTACTCCTTGCAA 57.425 32.000 0.00 0.00 0.00 4.08
2750 3585 8.001881 TGAACTTAATTTGTACTCCTTGCAAA 57.998 30.769 0.00 0.00 43.07 3.68
2756 3591 5.759506 TTTGTACTCCTTGCAAATTTCGA 57.240 34.783 0.00 0.00 35.14 3.71
2757 3592 5.759506 TTGTACTCCTTGCAAATTTCGAA 57.240 34.783 0.00 0.00 0.00 3.71
2758 3593 5.759506 TGTACTCCTTGCAAATTTCGAAA 57.240 34.783 13.91 13.91 0.00 3.46
2759 3594 6.325919 TGTACTCCTTGCAAATTTCGAAAT 57.674 33.333 17.60 17.60 0.00 2.17
2760 3595 6.148948 TGTACTCCTTGCAAATTTCGAAATG 58.851 36.000 23.38 14.79 0.00 2.32
2761 3596 5.452078 ACTCCTTGCAAATTTCGAAATGA 57.548 34.783 23.38 13.12 0.00 2.57
2762 3597 5.464168 ACTCCTTGCAAATTTCGAAATGAG 58.536 37.500 23.38 22.15 0.00 2.90
2763 3598 5.241506 ACTCCTTGCAAATTTCGAAATGAGA 59.758 36.000 26.22 15.08 0.00 3.27
2764 3599 6.083098 TCCTTGCAAATTTCGAAATGAGAA 57.917 33.333 23.38 11.23 0.00 2.87
2765 3600 6.511416 TCCTTGCAAATTTCGAAATGAGAAA 58.489 32.000 23.38 17.23 41.17 2.52
2766 3601 7.153985 TCCTTGCAAATTTCGAAATGAGAAAT 58.846 30.769 23.38 4.44 46.59 2.17
2767 3602 7.329226 TCCTTGCAAATTTCGAAATGAGAAATC 59.671 33.333 23.38 9.55 44.65 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
143 144 8.428186 TGGTCGCGATACTTTAAAAATAAGAT 57.572 30.769 14.06 0.00 0.00 2.40
144 145 7.830940 TGGTCGCGATACTTTAAAAATAAGA 57.169 32.000 14.06 0.00 0.00 2.10
145 146 9.498307 AATTGGTCGCGATACTTTAAAAATAAG 57.502 29.630 14.06 0.00 0.00 1.73
154 158 5.864986 CAACTAAATTGGTCGCGATACTTT 58.135 37.500 14.06 13.54 34.34 2.66
223 229 0.167908 TTGTTTCGTGCATGATCCGC 59.832 50.000 9.96 1.40 0.00 5.54
259 265 3.565214 TGAGGGCTGCCGTTGGAA 61.565 61.111 15.88 0.00 0.00 3.53
327 333 1.679032 GGTGGATGGAAAACGAGGGAG 60.679 57.143 0.00 0.00 0.00 4.30
332 338 1.381076 GGGGGTGGATGGAAAACGA 59.619 57.895 0.00 0.00 0.00 3.85
375 390 3.554342 CTGCATCGGGGGAGAGGG 61.554 72.222 0.00 0.00 0.00 4.30
389 404 3.551407 GGGACGAGGGGGATCTGC 61.551 72.222 0.00 0.00 0.00 4.26
407 422 2.989639 TGCCACCGAGGGATGAAG 59.010 61.111 0.00 0.00 38.09 3.02
414 429 3.402681 ACCCAGATGCCACCGAGG 61.403 66.667 0.00 0.00 41.84 4.63
415 430 2.124983 CACCCAGATGCCACCGAG 60.125 66.667 0.00 0.00 0.00 4.63
416 431 2.606213 TCACCCAGATGCCACCGA 60.606 61.111 0.00 0.00 0.00 4.69
420 440 2.934932 TGGCTCACCCAGATGCCA 60.935 61.111 1.06 1.06 43.56 4.92
464 484 4.394712 CCGGCCGCTCCAAGAACT 62.395 66.667 22.85 0.00 34.01 3.01
469 489 4.467084 GATGACCGGCCGCTCCAA 62.467 66.667 22.85 0.31 34.01 3.53
497 517 4.687215 GACGCAGCAGGAGTGGCA 62.687 66.667 0.00 0.00 0.00 4.92
500 520 1.005748 TGAAGACGCAGCAGGAGTG 60.006 57.895 0.00 0.00 0.00 3.51
509 529 0.039437 GAGAAGACGGTGAAGACGCA 60.039 55.000 0.00 0.00 34.00 5.24
519 539 0.179194 GACGACGAAGGAGAAGACGG 60.179 60.000 0.00 0.00 0.00 4.79
665 686 3.047280 GCGTGATGTGGCCAACGA 61.047 61.111 27.40 7.33 0.00 3.85
669 690 4.075854 TAGCGCGTGATGTGGCCA 62.076 61.111 8.43 0.00 0.00 5.36
674 695 0.458543 CTTGAGGTAGCGCGTGATGT 60.459 55.000 8.43 0.00 0.00 3.06
848 972 1.521450 GGTTGTCCTCGTCCTCGTCA 61.521 60.000 0.00 0.00 38.33 4.35
851 975 1.213013 CTGGTTGTCCTCGTCCTCG 59.787 63.158 0.00 0.00 38.55 4.63
860 984 2.019984 GAATGCAGATCCTGGTTGTCC 58.980 52.381 0.00 0.00 31.21 4.02
861 985 2.019984 GGAATGCAGATCCTGGTTGTC 58.980 52.381 12.86 0.00 33.98 3.18
862 986 1.341383 GGGAATGCAGATCCTGGTTGT 60.341 52.381 18.02 0.00 37.14 3.32
863 987 1.396653 GGGAATGCAGATCCTGGTTG 58.603 55.000 18.02 0.00 37.14 3.77
864 988 0.259938 GGGGAATGCAGATCCTGGTT 59.740 55.000 18.02 0.00 37.14 3.67
865 989 1.649271 GGGGGAATGCAGATCCTGGT 61.649 60.000 18.02 0.00 37.14 4.00
903 1027 9.109393 GTCAATCAAACAGTAGCAAAGGATATA 57.891 33.333 0.00 0.00 0.00 0.86
911 1071 4.756642 CAGAGGTCAATCAAACAGTAGCAA 59.243 41.667 0.00 0.00 0.00 3.91
916 1076 3.393800 CGACAGAGGTCAATCAAACAGT 58.606 45.455 0.00 0.00 44.54 3.55
990 1352 1.267121 CGTCCCCCATAGGATCGAAT 58.733 55.000 0.00 0.00 38.48 3.34
1025 1388 1.302511 GCAACAGTGTCGGATGGGT 60.303 57.895 0.00 0.00 0.00 4.51
1070 1738 3.386486 TCGAAATAACAGCAGTTCACGT 58.614 40.909 0.00 0.00 39.15 4.49
1072 1740 5.324697 GGAATCGAAATAACAGCAGTTCAC 58.675 41.667 0.00 0.00 39.15 3.18
1073 1741 4.394920 GGGAATCGAAATAACAGCAGTTCA 59.605 41.667 0.00 0.00 39.15 3.18
1078 1746 3.128589 GCAAGGGAATCGAAATAACAGCA 59.871 43.478 0.00 0.00 0.00 4.41
1102 1770 6.493116 CAAGCTAATCAATCGAAGATGCTTT 58.507 36.000 18.14 7.33 45.12 3.51
1168 1872 4.100529 CGATCTATTTGCTTGGCTTTGTG 58.899 43.478 0.00 0.00 0.00 3.33
1199 1903 9.690913 CATCCAGATGTCCAAATGGTTATATAT 57.309 33.333 0.00 0.00 36.34 0.86
1246 1958 4.099881 AGGCACAAAATCACATCAAACAGT 59.900 37.500 0.00 0.00 0.00 3.55
1265 1985 8.232913 AGAAATCAGTTTAAGTTTTACAGGCA 57.767 30.769 0.00 0.00 0.00 4.75
1331 2061 1.605165 GTTGGTCCATCCGGCCAAA 60.605 57.895 11.51 0.00 44.71 3.28
1367 2098 4.899239 CGCCTCCATGGAGCCGAC 62.899 72.222 35.27 21.65 44.42 4.79
1370 2101 4.554036 GGACGCCTCCATGGAGCC 62.554 72.222 32.97 24.64 40.69 4.70
1501 2236 6.097412 ACGTTCTTATTAGACCCGAGGTTATT 59.903 38.462 6.91 0.00 35.25 1.40
1518 2253 2.263540 GGGCGAGGCACGTTCTTA 59.736 61.111 6.15 0.00 44.60 2.10
1638 2469 0.179020 TGATGCCCGATTCACCATCC 60.179 55.000 0.00 0.00 34.61 3.51
1655 2486 2.677836 GCCATCGCTTGAACTGTATTGA 59.322 45.455 0.00 0.00 0.00 2.57
1710 2541 5.336213 GGTTCTGTCAACAGGATTACGTCTA 60.336 44.000 10.13 0.00 43.91 2.59
1714 2545 3.926616 AGGTTCTGTCAACAGGATTACG 58.073 45.455 10.13 0.00 43.91 3.18
1716 2547 4.020218 CCTGAGGTTCTGTCAACAGGATTA 60.020 45.833 10.13 0.00 45.02 1.75
1805 2637 6.178239 ACACCGCATAACAATTCTAAACTC 57.822 37.500 0.00 0.00 0.00 3.01
1830 2662 9.261180 GAATTAATATCACACTAACAGCTAGCA 57.739 33.333 18.83 0.00 0.00 3.49
1844 2676 7.016361 ACCAACGCTTCTGAATTAATATCAC 57.984 36.000 0.00 0.00 0.00 3.06
1867 2699 7.653647 TGAACACAACATATACCAAGGAAAAC 58.346 34.615 0.00 0.00 0.00 2.43
1893 2725 4.040952 ACAGTTCTGAACTACTGCCAGAAT 59.959 41.667 21.65 0.00 45.20 2.40
1960 2794 7.285629 TGAACACAACATGTACCAAGGAAAATA 59.714 33.333 0.00 0.00 42.31 1.40
2109 2944 6.823689 TGAATTGCTTTATCTCCACCTAGTTC 59.176 38.462 0.00 0.00 0.00 3.01
2116 2951 5.521372 GCCAAATGAATTGCTTTATCTCCAC 59.479 40.000 0.00 0.00 37.73 4.02
2118 2953 5.910614 AGCCAAATGAATTGCTTTATCTCC 58.089 37.500 0.00 0.00 37.73 3.71
2127 2962 3.499157 TGAGCAAAAGCCAAATGAATTGC 59.501 39.130 0.00 0.00 42.48 3.56
2204 3039 7.147915 ACCTAGTCTCTGAATCAGAACATCTTC 60.148 40.741 14.44 0.81 40.18 2.87
2205 3040 6.667414 ACCTAGTCTCTGAATCAGAACATCTT 59.333 38.462 14.44 3.30 40.18 2.40
2206 3041 6.096705 CACCTAGTCTCTGAATCAGAACATCT 59.903 42.308 14.44 11.49 40.18 2.90
2207 3042 6.096141 TCACCTAGTCTCTGAATCAGAACATC 59.904 42.308 14.44 5.23 40.18 3.06
2208 3043 5.954752 TCACCTAGTCTCTGAATCAGAACAT 59.045 40.000 14.44 5.36 40.18 2.71
2209 3044 5.184096 GTCACCTAGTCTCTGAATCAGAACA 59.816 44.000 14.44 0.99 40.18 3.18
2210 3045 5.184096 TGTCACCTAGTCTCTGAATCAGAAC 59.816 44.000 14.44 14.03 40.18 3.01
2211 3046 5.325239 TGTCACCTAGTCTCTGAATCAGAA 58.675 41.667 14.44 3.04 40.18 3.02
2212 3047 4.923415 TGTCACCTAGTCTCTGAATCAGA 58.077 43.478 12.87 12.87 38.25 3.27
2213 3048 4.704540 ACTGTCACCTAGTCTCTGAATCAG 59.295 45.833 3.38 3.38 0.00 2.90
2214 3049 4.460731 CACTGTCACCTAGTCTCTGAATCA 59.539 45.833 0.00 0.00 0.00 2.57
2215 3050 4.676723 GCACTGTCACCTAGTCTCTGAATC 60.677 50.000 0.00 0.00 0.00 2.52
2216 3051 3.194542 GCACTGTCACCTAGTCTCTGAAT 59.805 47.826 0.00 0.00 0.00 2.57
2217 3052 2.558795 GCACTGTCACCTAGTCTCTGAA 59.441 50.000 0.00 0.00 0.00 3.02
2218 3053 2.163509 GCACTGTCACCTAGTCTCTGA 58.836 52.381 0.00 0.00 0.00 3.27
2219 3054 2.166829 AGCACTGTCACCTAGTCTCTG 58.833 52.381 0.00 0.00 0.00 3.35
2220 3055 2.595750 AGCACTGTCACCTAGTCTCT 57.404 50.000 0.00 0.00 0.00 3.10
2221 3056 3.669251 AAAGCACTGTCACCTAGTCTC 57.331 47.619 0.00 0.00 0.00 3.36
2222 3057 4.130118 CAAAAAGCACTGTCACCTAGTCT 58.870 43.478 0.00 0.00 0.00 3.24
2223 3058 4.127171 TCAAAAAGCACTGTCACCTAGTC 58.873 43.478 0.00 0.00 0.00 2.59
2224 3059 4.150897 TCAAAAAGCACTGTCACCTAGT 57.849 40.909 0.00 0.00 0.00 2.57
2225 3060 5.695851 ATTCAAAAAGCACTGTCACCTAG 57.304 39.130 0.00 0.00 0.00 3.02
2226 3061 6.463995 AAATTCAAAAAGCACTGTCACCTA 57.536 33.333 0.00 0.00 0.00 3.08
2227 3062 5.343307 AAATTCAAAAAGCACTGTCACCT 57.657 34.783 0.00 0.00 0.00 4.00
2228 3063 6.421377 AAAAATTCAAAAAGCACTGTCACC 57.579 33.333 0.00 0.00 0.00 4.02
2229 3064 9.034544 AGATAAAAATTCAAAAAGCACTGTCAC 57.965 29.630 0.00 0.00 0.00 3.67
2230 3065 9.248291 GAGATAAAAATTCAAAAAGCACTGTCA 57.752 29.630 0.00 0.00 0.00 3.58
2231 3066 9.248291 TGAGATAAAAATTCAAAAAGCACTGTC 57.752 29.630 0.00 0.00 0.00 3.51
2232 3067 9.598517 TTGAGATAAAAATTCAAAAAGCACTGT 57.401 25.926 0.00 0.00 0.00 3.55
2255 3090 9.142515 GCTTGATGTTTCATCATTGTTAATTGA 57.857 29.630 12.22 0.00 0.00 2.57
2256 3091 8.927721 TGCTTGATGTTTCATCATTGTTAATTG 58.072 29.630 12.22 0.00 0.00 2.32
2257 3092 9.491675 TTGCTTGATGTTTCATCATTGTTAATT 57.508 25.926 12.22 0.00 0.00 1.40
2258 3093 9.661563 ATTGCTTGATGTTTCATCATTGTTAAT 57.338 25.926 12.22 10.26 0.00 1.40
2262 3097 9.961265 CTATATTGCTTGATGTTTCATCATTGT 57.039 29.630 12.22 2.60 0.00 2.71
2300 3135 8.402798 TCACAACATAAAGTGGAACAATATGT 57.597 30.769 0.00 0.00 46.13 2.29
2301 3136 7.970061 CCTCACAACATAAAGTGGAACAATATG 59.030 37.037 0.00 0.00 44.16 1.78
2302 3137 7.362920 GCCTCACAACATAAAGTGGAACAATAT 60.363 37.037 0.00 0.00 44.16 1.28
2303 3138 6.072175 GCCTCACAACATAAAGTGGAACAATA 60.072 38.462 0.00 0.00 44.16 1.90
2304 3139 5.278957 GCCTCACAACATAAAGTGGAACAAT 60.279 40.000 0.00 0.00 44.16 2.71
2305 3140 4.037446 GCCTCACAACATAAAGTGGAACAA 59.963 41.667 0.00 0.00 44.16 2.83
2306 3141 3.568007 GCCTCACAACATAAAGTGGAACA 59.432 43.478 0.00 0.00 41.43 3.18
2307 3142 3.057526 GGCCTCACAACATAAAGTGGAAC 60.058 47.826 0.00 0.00 36.43 3.62
2308 3143 3.153919 GGCCTCACAACATAAAGTGGAA 58.846 45.455 0.00 0.00 36.43 3.53
2309 3144 2.790433 GGCCTCACAACATAAAGTGGA 58.210 47.619 0.00 0.00 36.43 4.02
2310 3145 1.468520 CGGCCTCACAACATAAAGTGG 59.531 52.381 0.00 0.00 36.43 4.00
2311 3146 2.095768 CACGGCCTCACAACATAAAGTG 60.096 50.000 0.00 0.00 37.10 3.16
2312 3147 2.151202 CACGGCCTCACAACATAAAGT 58.849 47.619 0.00 0.00 0.00 2.66
2313 3148 2.416547 CTCACGGCCTCACAACATAAAG 59.583 50.000 0.00 0.00 0.00 1.85
2314 3149 2.037902 TCTCACGGCCTCACAACATAAA 59.962 45.455 0.00 0.00 0.00 1.40
2315 3150 1.621317 TCTCACGGCCTCACAACATAA 59.379 47.619 0.00 0.00 0.00 1.90
2316 3151 1.262417 TCTCACGGCCTCACAACATA 58.738 50.000 0.00 0.00 0.00 2.29
2317 3152 0.615331 ATCTCACGGCCTCACAACAT 59.385 50.000 0.00 0.00 0.00 2.71
2318 3153 0.320683 CATCTCACGGCCTCACAACA 60.321 55.000 0.00 0.00 0.00 3.33
2319 3154 1.639298 GCATCTCACGGCCTCACAAC 61.639 60.000 0.00 0.00 0.00 3.32
2320 3155 1.375908 GCATCTCACGGCCTCACAA 60.376 57.895 0.00 0.00 0.00 3.33
2321 3156 2.265739 GCATCTCACGGCCTCACA 59.734 61.111 0.00 0.00 0.00 3.58
2322 3157 2.103042 GTGCATCTCACGGCCTCAC 61.103 63.158 0.00 0.00 35.76 3.51
2323 3158 2.265739 GTGCATCTCACGGCCTCA 59.734 61.111 0.00 0.00 35.76 3.86
2330 3165 5.643664 TGCATAAAAATCAGTGCATCTCAC 58.356 37.500 0.00 0.00 42.13 3.51
2331 3166 5.900865 TGCATAAAAATCAGTGCATCTCA 57.099 34.783 0.00 0.00 42.13 3.27
2336 3171 4.804868 ATGGTGCATAAAAATCAGTGCA 57.195 36.364 0.00 0.00 44.50 4.57
2337 3172 5.870978 AGAAATGGTGCATAAAAATCAGTGC 59.129 36.000 0.00 0.00 38.05 4.40
2338 3173 7.894376 AAGAAATGGTGCATAAAAATCAGTG 57.106 32.000 0.00 0.00 0.00 3.66
2339 3174 8.907222 AAAAGAAATGGTGCATAAAAATCAGT 57.093 26.923 0.00 0.00 0.00 3.41
2356 3191 6.128035 GGCGGCCATTTCAAATTAAAAGAAAT 60.128 34.615 15.62 7.09 41.28 2.17
2357 3192 5.180304 GGCGGCCATTTCAAATTAAAAGAAA 59.820 36.000 15.62 0.00 35.92 2.52
2358 3193 4.693095 GGCGGCCATTTCAAATTAAAAGAA 59.307 37.500 15.62 0.00 0.00 2.52
2359 3194 4.249661 GGCGGCCATTTCAAATTAAAAGA 58.750 39.130 15.62 0.00 0.00 2.52
2360 3195 3.373748 GGGCGGCCATTTCAAATTAAAAG 59.626 43.478 25.33 0.00 0.00 2.27
2361 3196 3.008485 AGGGCGGCCATTTCAAATTAAAA 59.992 39.130 31.59 0.00 0.00 1.52
2362 3197 2.569404 AGGGCGGCCATTTCAAATTAAA 59.431 40.909 31.59 0.00 0.00 1.52
2363 3198 2.183679 AGGGCGGCCATTTCAAATTAA 58.816 42.857 31.59 0.00 0.00 1.40
2364 3199 1.859302 AGGGCGGCCATTTCAAATTA 58.141 45.000 31.59 0.00 0.00 1.40
2365 3200 0.983467 AAGGGCGGCCATTTCAAATT 59.017 45.000 31.59 10.09 0.00 1.82
2366 3201 0.249955 CAAGGGCGGCCATTTCAAAT 59.750 50.000 31.59 3.02 0.00 2.32
2367 3202 1.670590 CAAGGGCGGCCATTTCAAA 59.329 52.632 31.59 0.00 0.00 2.69
2368 3203 2.282039 CCAAGGGCGGCCATTTCAA 61.282 57.895 31.59 0.00 0.00 2.69
2369 3204 2.679642 CCAAGGGCGGCCATTTCA 60.680 61.111 31.59 0.00 0.00 2.69
2380 3215 1.043022 ACAAAAGCAAGAGCCAAGGG 58.957 50.000 0.00 0.00 43.56 3.95
2381 3216 2.101249 TGAACAAAAGCAAGAGCCAAGG 59.899 45.455 0.00 0.00 43.56 3.61
2382 3217 3.441496 TGAACAAAAGCAAGAGCCAAG 57.559 42.857 0.00 0.00 43.56 3.61
2383 3218 3.883830 TTGAACAAAAGCAAGAGCCAA 57.116 38.095 0.00 0.00 43.56 4.52
2384 3219 3.132646 ACATTGAACAAAAGCAAGAGCCA 59.867 39.130 0.00 0.00 43.56 4.75
2385 3220 3.721035 ACATTGAACAAAAGCAAGAGCC 58.279 40.909 0.00 0.00 43.56 4.70
2386 3221 7.756722 ACATATACATTGAACAAAAGCAAGAGC 59.243 33.333 0.00 0.00 42.56 4.09
2387 3222 9.069078 CACATATACATTGAACAAAAGCAAGAG 57.931 33.333 0.00 0.00 0.00 2.85
2388 3223 7.541783 GCACATATACATTGAACAAAAGCAAGA 59.458 33.333 0.00 0.00 0.00 3.02
2389 3224 7.543172 AGCACATATACATTGAACAAAAGCAAG 59.457 33.333 0.00 0.00 0.00 4.01
2390 3225 7.377398 AGCACATATACATTGAACAAAAGCAA 58.623 30.769 0.00 0.00 0.00 3.91
2391 3226 6.923012 AGCACATATACATTGAACAAAAGCA 58.077 32.000 0.00 0.00 0.00 3.91
2392 3227 7.253422 AGAGCACATATACATTGAACAAAAGC 58.747 34.615 0.00 0.00 0.00 3.51
2393 3228 9.630098 AAAGAGCACATATACATTGAACAAAAG 57.370 29.630 0.00 0.00 0.00 2.27
2394 3229 9.624697 GAAAGAGCACATATACATTGAACAAAA 57.375 29.630 0.00 0.00 0.00 2.44
2395 3230 9.013229 AGAAAGAGCACATATACATTGAACAAA 57.987 29.630 0.00 0.00 0.00 2.83
2396 3231 8.453320 CAGAAAGAGCACATATACATTGAACAA 58.547 33.333 0.00 0.00 0.00 2.83
2397 3232 7.823799 TCAGAAAGAGCACATATACATTGAACA 59.176 33.333 0.00 0.00 0.00 3.18
2398 3233 8.201554 TCAGAAAGAGCACATATACATTGAAC 57.798 34.615 0.00 0.00 0.00 3.18
2399 3234 8.969260 ATCAGAAAGAGCACATATACATTGAA 57.031 30.769 0.00 0.00 0.00 2.69
2400 3235 8.969260 AATCAGAAAGAGCACATATACATTGA 57.031 30.769 0.00 0.00 0.00 2.57
2401 3236 9.447040 CAAATCAGAAAGAGCACATATACATTG 57.553 33.333 0.00 0.00 0.00 2.82
2402 3237 9.182214 ACAAATCAGAAAGAGCACATATACATT 57.818 29.630 0.00 0.00 0.00 2.71
2403 3238 8.743085 ACAAATCAGAAAGAGCACATATACAT 57.257 30.769 0.00 0.00 0.00 2.29
2404 3239 9.665719 TTACAAATCAGAAAGAGCACATATACA 57.334 29.630 0.00 0.00 0.00 2.29
2406 3241 8.830580 GCTTACAAATCAGAAAGAGCACATATA 58.169 33.333 0.00 0.00 0.00 0.86
2407 3242 7.337689 TGCTTACAAATCAGAAAGAGCACATAT 59.662 33.333 0.00 0.00 34.33 1.78
2408 3243 6.654582 TGCTTACAAATCAGAAAGAGCACATA 59.345 34.615 0.00 0.00 34.33 2.29
2409 3244 5.474532 TGCTTACAAATCAGAAAGAGCACAT 59.525 36.000 0.00 0.00 34.33 3.21
2410 3245 4.821260 TGCTTACAAATCAGAAAGAGCACA 59.179 37.500 0.00 0.00 34.33 4.57
2411 3246 5.362556 TGCTTACAAATCAGAAAGAGCAC 57.637 39.130 0.00 0.00 34.33 4.40
2412 3247 6.317140 CCTATGCTTACAAATCAGAAAGAGCA 59.683 38.462 0.00 0.00 42.30 4.26
2413 3248 6.317391 ACCTATGCTTACAAATCAGAAAGAGC 59.683 38.462 0.00 0.00 0.00 4.09
2414 3249 7.201679 CCACCTATGCTTACAAATCAGAAAGAG 60.202 40.741 0.00 0.00 0.00 2.85
2415 3250 6.599244 CCACCTATGCTTACAAATCAGAAAGA 59.401 38.462 0.00 0.00 0.00 2.52
2416 3251 6.375455 ACCACCTATGCTTACAAATCAGAAAG 59.625 38.462 0.00 0.00 0.00 2.62
2417 3252 6.245408 ACCACCTATGCTTACAAATCAGAAA 58.755 36.000 0.00 0.00 0.00 2.52
2418 3253 5.815581 ACCACCTATGCTTACAAATCAGAA 58.184 37.500 0.00 0.00 0.00 3.02
2419 3254 5.435686 ACCACCTATGCTTACAAATCAGA 57.564 39.130 0.00 0.00 0.00 3.27
2420 3255 7.807977 ATAACCACCTATGCTTACAAATCAG 57.192 36.000 0.00 0.00 0.00 2.90
2421 3256 7.936847 CCTATAACCACCTATGCTTACAAATCA 59.063 37.037 0.00 0.00 0.00 2.57
2422 3257 7.937394 ACCTATAACCACCTATGCTTACAAATC 59.063 37.037 0.00 0.00 0.00 2.17
2427 3262 6.823497 TCAACCTATAACCACCTATGCTTAC 58.177 40.000 0.00 0.00 0.00 2.34
2437 3272 7.807977 ATTCATCACATCAACCTATAACCAC 57.192 36.000 0.00 0.00 0.00 4.16
2489 3324 2.361438 ACAACTGGCTCTAGTATACCGC 59.639 50.000 0.00 0.00 0.00 5.68
2530 3365 7.171678 ACAGATTCTGTAAGCAACTAGAACAAC 59.828 37.037 17.63 0.00 43.46 3.32
2555 3390 2.464157 AGTTGCAAGGAGTAGAGCAC 57.536 50.000 0.00 0.00 36.62 4.40
2558 3393 7.913674 AGAATTTAAGTTGCAAGGAGTAGAG 57.086 36.000 0.00 0.00 0.00 2.43
2589 3424 6.183360 ACGAGCAAACATACTATACATGAGGT 60.183 38.462 0.00 0.00 0.00 3.85
2590 3425 6.216569 ACGAGCAAACATACTATACATGAGG 58.783 40.000 0.00 0.00 0.00 3.86
2599 3434 8.048534 ACTACTTCTTACGAGCAAACATACTA 57.951 34.615 0.00 0.00 0.00 1.82
2605 3440 5.799435 GGAGTACTACTTCTTACGAGCAAAC 59.201 44.000 0.00 0.00 0.00 2.93
2606 3441 5.391310 CGGAGTACTACTTCTTACGAGCAAA 60.391 44.000 2.99 0.00 0.00 3.68
2607 3442 4.093998 CGGAGTACTACTTCTTACGAGCAA 59.906 45.833 2.99 0.00 0.00 3.91
2608 3443 3.620374 CGGAGTACTACTTCTTACGAGCA 59.380 47.826 2.99 0.00 0.00 4.26
2609 3444 3.868077 TCGGAGTACTACTTCTTACGAGC 59.132 47.826 2.99 0.00 0.00 5.03
2610 3445 6.414408 TTTCGGAGTACTACTTCTTACGAG 57.586 41.667 2.99 0.00 0.00 4.18
2611 3446 6.992063 ATTTCGGAGTACTACTTCTTACGA 57.008 37.500 2.99 0.00 0.00 3.43
2612 3447 7.025963 ACAATTTCGGAGTACTACTTCTTACG 58.974 38.462 2.99 0.00 0.00 3.18
2613 3448 9.283420 GTACAATTTCGGAGTACTACTTCTTAC 57.717 37.037 2.99 0.00 36.18 2.34
2614 3449 9.013229 TGTACAATTTCGGAGTACTACTTCTTA 57.987 33.333 2.99 0.00 39.02 2.10
2615 3450 7.889469 TGTACAATTTCGGAGTACTACTTCTT 58.111 34.615 2.99 0.00 39.02 2.52
2616 3451 7.458409 TGTACAATTTCGGAGTACTACTTCT 57.542 36.000 2.99 0.00 39.02 2.85
2617 3452 8.699283 ATTGTACAATTTCGGAGTACTACTTC 57.301 34.615 15.47 0.00 39.02 3.01
2618 3453 9.498176 AAATTGTACAATTTCGGAGTACTACTT 57.502 29.630 31.61 12.13 44.98 2.24
2619 3454 8.932791 CAAATTGTACAATTTCGGAGTACTACT 58.067 33.333 33.49 13.59 46.01 2.57
2620 3455 8.173130 CCAAATTGTACAATTTCGGAGTACTAC 58.827 37.037 33.49 0.00 46.01 2.73
2621 3456 7.879160 ACCAAATTGTACAATTTCGGAGTACTA 59.121 33.333 36.82 11.27 46.01 1.82
2622 3457 6.713450 ACCAAATTGTACAATTTCGGAGTACT 59.287 34.615 36.82 25.04 46.01 2.73
2623 3458 6.905578 ACCAAATTGTACAATTTCGGAGTAC 58.094 36.000 36.82 0.00 46.01 2.73
2624 3459 7.364200 CAACCAAATTGTACAATTTCGGAGTA 58.636 34.615 36.82 12.17 46.01 2.59
2625 3460 6.212955 CAACCAAATTGTACAATTTCGGAGT 58.787 36.000 36.82 28.99 46.01 3.85
2626 3461 5.118510 GCAACCAAATTGTACAATTTCGGAG 59.881 40.000 36.82 31.49 46.01 4.63
2627 3462 4.985409 GCAACCAAATTGTACAATTTCGGA 59.015 37.500 36.82 13.88 46.01 4.55
2628 3463 4.747108 TGCAACCAAATTGTACAATTTCGG 59.253 37.500 33.14 33.14 46.01 4.30
2629 3464 5.896922 TGCAACCAAATTGTACAATTTCG 57.103 34.783 33.49 30.11 46.01 3.46
2630 3465 7.475771 TCTTGCAACCAAATTGTACAATTTC 57.524 32.000 33.49 24.59 46.01 2.17
2632 3467 7.047271 ACTTCTTGCAACCAAATTGTACAATT 58.953 30.769 24.88 24.88 42.35 2.32
2633 3468 6.581712 ACTTCTTGCAACCAAATTGTACAAT 58.418 32.000 15.47 15.47 40.77 2.71
2634 3469 5.971763 ACTTCTTGCAACCAAATTGTACAA 58.028 33.333 11.41 11.41 40.77 2.41
2635 3470 5.590530 ACTTCTTGCAACCAAATTGTACA 57.409 34.783 0.00 0.00 40.77 2.90
2636 3471 6.735130 ACTACTTCTTGCAACCAAATTGTAC 58.265 36.000 0.00 0.00 40.77 2.90
2637 3472 6.952773 ACTACTTCTTGCAACCAAATTGTA 57.047 33.333 0.00 0.00 40.77 2.41
2638 3473 5.852282 ACTACTTCTTGCAACCAAATTGT 57.148 34.783 0.00 0.00 40.77 2.71
2639 3474 5.851177 CGTACTACTTCTTGCAACCAAATTG 59.149 40.000 0.00 0.00 41.69 2.32
2640 3475 5.562113 GCGTACTACTTCTTGCAACCAAATT 60.562 40.000 0.00 0.00 0.00 1.82
2641 3476 4.083484 GCGTACTACTTCTTGCAACCAAAT 60.083 41.667 0.00 0.00 0.00 2.32
2642 3477 3.249080 GCGTACTACTTCTTGCAACCAAA 59.751 43.478 0.00 0.00 0.00 3.28
2643 3478 2.803956 GCGTACTACTTCTTGCAACCAA 59.196 45.455 0.00 0.00 0.00 3.67
2644 3479 2.409975 GCGTACTACTTCTTGCAACCA 58.590 47.619 0.00 0.00 0.00 3.67
2645 3480 1.730612 GGCGTACTACTTCTTGCAACC 59.269 52.381 0.00 0.00 0.00 3.77
2646 3481 1.389106 CGGCGTACTACTTCTTGCAAC 59.611 52.381 0.00 0.00 0.00 4.17
2647 3482 1.270274 TCGGCGTACTACTTCTTGCAA 59.730 47.619 6.85 0.00 0.00 4.08
2648 3483 0.883153 TCGGCGTACTACTTCTTGCA 59.117 50.000 6.85 0.00 0.00 4.08
2649 3484 1.986698 TTCGGCGTACTACTTCTTGC 58.013 50.000 6.85 0.00 0.00 4.01
2650 3485 4.387862 ACAATTTCGGCGTACTACTTCTTG 59.612 41.667 6.85 2.31 0.00 3.02
2651 3486 4.563061 ACAATTTCGGCGTACTACTTCTT 58.437 39.130 6.85 0.00 0.00 2.52
2652 3487 4.184079 ACAATTTCGGCGTACTACTTCT 57.816 40.909 6.85 0.00 0.00 2.85
2653 3488 4.858692 TGTACAATTTCGGCGTACTACTTC 59.141 41.667 6.85 0.00 37.11 3.01
2654 3489 4.808558 TGTACAATTTCGGCGTACTACTT 58.191 39.130 6.85 0.00 37.11 2.24
2655 3490 4.082571 ACTGTACAATTTCGGCGTACTACT 60.083 41.667 6.85 0.00 37.11 2.57
2656 3491 4.168760 ACTGTACAATTTCGGCGTACTAC 58.831 43.478 6.85 0.35 37.11 2.73
2657 3492 4.439305 ACTGTACAATTTCGGCGTACTA 57.561 40.909 6.85 0.00 37.11 1.82
2658 3493 3.308438 ACTGTACAATTTCGGCGTACT 57.692 42.857 6.85 0.00 37.11 2.73
2659 3494 4.145997 CAAACTGTACAATTTCGGCGTAC 58.854 43.478 6.85 1.04 36.79 3.67
2660 3495 3.186817 CCAAACTGTACAATTTCGGCGTA 59.813 43.478 6.85 0.00 0.00 4.42
2661 3496 2.031508 CCAAACTGTACAATTTCGGCGT 60.032 45.455 6.85 0.00 0.00 5.68
2662 3497 2.031508 ACCAAACTGTACAATTTCGGCG 60.032 45.455 14.21 0.00 0.00 6.46
2663 3498 3.636282 ACCAAACTGTACAATTTCGGC 57.364 42.857 14.21 0.00 0.00 5.54
2664 3499 3.733727 GCAACCAAACTGTACAATTTCGG 59.266 43.478 13.26 13.26 0.00 4.30
2665 3500 4.355437 TGCAACCAAACTGTACAATTTCG 58.645 39.130 0.00 0.00 0.00 3.46
2666 3501 5.276820 GCTTGCAACCAAACTGTACAATTTC 60.277 40.000 0.00 0.00 0.00 2.17
2667 3502 4.570369 GCTTGCAACCAAACTGTACAATTT 59.430 37.500 0.00 0.00 0.00 1.82
2668 3503 4.119136 GCTTGCAACCAAACTGTACAATT 58.881 39.130 0.00 0.00 0.00 2.32
2669 3504 3.131933 TGCTTGCAACCAAACTGTACAAT 59.868 39.130 0.00 0.00 0.00 2.71
2670 3505 2.493675 TGCTTGCAACCAAACTGTACAA 59.506 40.909 0.00 0.00 0.00 2.41
2671 3506 2.095461 TGCTTGCAACCAAACTGTACA 58.905 42.857 0.00 0.00 0.00 2.90
2672 3507 2.861462 TGCTTGCAACCAAACTGTAC 57.139 45.000 0.00 0.00 0.00 2.90
2673 3508 2.481104 GCTTGCTTGCAACCAAACTGTA 60.481 45.455 8.46 0.00 0.00 2.74
2674 3509 1.740043 GCTTGCTTGCAACCAAACTGT 60.740 47.619 8.46 0.00 0.00 3.55
2675 3510 0.932399 GCTTGCTTGCAACCAAACTG 59.068 50.000 8.46 0.00 0.00 3.16
2676 3511 0.536260 TGCTTGCTTGCAACCAAACT 59.464 45.000 8.46 0.00 40.29 2.66
2677 3512 1.367659 TTGCTTGCTTGCAACCAAAC 58.632 45.000 12.05 4.99 46.43 2.93
2678 3513 3.849002 TTGCTTGCTTGCAACCAAA 57.151 42.105 12.05 2.30 46.43 3.28
2684 3519 1.477700 AGTTCAGTTTGCTTGCTTGCA 59.522 42.857 0.27 0.27 41.65 4.08
2685 3520 2.122564 GAGTTCAGTTTGCTTGCTTGC 58.877 47.619 0.00 0.00 0.00 4.01
2686 3521 3.425577 TGAGTTCAGTTTGCTTGCTTG 57.574 42.857 0.00 0.00 0.00 4.01
2687 3522 4.660789 ATTGAGTTCAGTTTGCTTGCTT 57.339 36.364 0.00 0.00 0.00 3.91
2688 3523 4.660789 AATTGAGTTCAGTTTGCTTGCT 57.339 36.364 0.00 0.00 0.00 3.91
2689 3524 5.521372 AGAAAATTGAGTTCAGTTTGCTTGC 59.479 36.000 5.12 0.00 37.98 4.01
2690 3525 7.254218 GGAAGAAAATTGAGTTCAGTTTGCTTG 60.254 37.037 21.26 0.00 45.60 4.01
2692 3527 6.097412 AGGAAGAAAATTGAGTTCAGTTTGCT 59.903 34.615 5.12 5.12 41.47 3.91
2693 3528 6.276091 AGGAAGAAAATTGAGTTCAGTTTGC 58.724 36.000 3.78 2.37 36.20 3.68
2694 3529 7.254218 GCAAGGAAGAAAATTGAGTTCAGTTTG 60.254 37.037 3.78 0.00 36.20 2.93
2695 3530 6.758416 GCAAGGAAGAAAATTGAGTTCAGTTT 59.242 34.615 0.00 0.00 37.38 2.66
2696 3531 6.127366 TGCAAGGAAGAAAATTGAGTTCAGTT 60.127 34.615 0.00 0.00 0.00 3.16
2697 3532 5.360714 TGCAAGGAAGAAAATTGAGTTCAGT 59.639 36.000 0.00 0.00 0.00 3.41
2698 3533 5.835257 TGCAAGGAAGAAAATTGAGTTCAG 58.165 37.500 0.00 0.00 0.00 3.02
2699 3534 5.850557 TGCAAGGAAGAAAATTGAGTTCA 57.149 34.783 0.00 0.00 0.00 3.18
2700 3535 7.719778 ATTTGCAAGGAAGAAAATTGAGTTC 57.280 32.000 0.00 0.00 0.00 3.01
2701 3536 7.769970 TCAATTTGCAAGGAAGAAAATTGAGTT 59.230 29.630 15.35 0.00 46.32 3.01
2702 3537 7.274447 TCAATTTGCAAGGAAGAAAATTGAGT 58.726 30.769 15.35 0.00 46.32 3.41
2703 3538 7.718272 TCAATTTGCAAGGAAGAAAATTGAG 57.282 32.000 15.35 0.00 46.32 3.02
2705 3540 7.922837 AGTTCAATTTGCAAGGAAGAAAATTG 58.077 30.769 11.96 11.96 45.14 2.32
2706 3541 8.510243 AAGTTCAATTTGCAAGGAAGAAAATT 57.490 26.923 0.00 0.00 33.61 1.82
2707 3542 9.612066 TTAAGTTCAATTTGCAAGGAAGAAAAT 57.388 25.926 0.00 0.00 0.00 1.82
2708 3543 9.612066 ATTAAGTTCAATTTGCAAGGAAGAAAA 57.388 25.926 0.00 1.29 0.00 2.29
2709 3544 9.612066 AATTAAGTTCAATTTGCAAGGAAGAAA 57.388 25.926 0.00 1.60 0.00 2.52
2710 3545 9.612066 AAATTAAGTTCAATTTGCAAGGAAGAA 57.388 25.926 0.00 0.54 36.88 2.52
2711 3546 9.044150 CAAATTAAGTTCAATTTGCAAGGAAGA 57.956 29.630 0.00 0.00 44.47 2.87
2721 3556 9.476202 GCAAGGAGTACAAATTAAGTTCAATTT 57.524 29.630 0.00 0.00 38.37 1.82
2722 3557 8.637986 TGCAAGGAGTACAAATTAAGTTCAATT 58.362 29.630 0.00 0.00 0.00 2.32
2723 3558 8.177119 TGCAAGGAGTACAAATTAAGTTCAAT 57.823 30.769 0.00 0.00 0.00 2.57
2724 3559 7.575414 TGCAAGGAGTACAAATTAAGTTCAA 57.425 32.000 0.00 0.00 0.00 2.69
2725 3560 7.575414 TTGCAAGGAGTACAAATTAAGTTCA 57.425 32.000 0.00 0.00 0.00 3.18
2726 3561 9.476202 AATTTGCAAGGAGTACAAATTAAGTTC 57.524 29.630 10.31 0.00 46.62 3.01
2733 3568 6.325919 TCGAAATTTGCAAGGAGTACAAAT 57.674 33.333 0.00 0.00 43.84 2.32
2734 3569 5.759506 TCGAAATTTGCAAGGAGTACAAA 57.240 34.783 0.00 0.00 37.66 2.83
2735 3570 5.759506 TTCGAAATTTGCAAGGAGTACAA 57.240 34.783 0.00 0.00 0.00 2.41
2736 3571 5.759506 TTTCGAAATTTGCAAGGAGTACA 57.240 34.783 6.47 0.00 0.00 2.90
2737 3572 6.378582 TCATTTCGAAATTTGCAAGGAGTAC 58.621 36.000 20.56 0.00 0.00 2.73
2738 3573 6.429692 TCTCATTTCGAAATTTGCAAGGAGTA 59.570 34.615 20.56 9.40 0.00 2.59
2739 3574 5.241506 TCTCATTTCGAAATTTGCAAGGAGT 59.758 36.000 20.56 0.00 0.00 3.85
2740 3575 5.702865 TCTCATTTCGAAATTTGCAAGGAG 58.297 37.500 20.56 19.49 0.00 3.69
2741 3576 5.703978 TCTCATTTCGAAATTTGCAAGGA 57.296 34.783 20.56 11.74 0.00 3.36
2742 3577 6.768029 TTTCTCATTTCGAAATTTGCAAGG 57.232 33.333 20.56 8.07 0.00 3.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.