Multiple sequence alignment - TraesCS4A01G135200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G135200 chr4A 100.000 5027 0 0 1 5027 185986338 185991364 0.000000e+00 9284.0
1 TraesCS4A01G135200 chr4A 97.727 44 1 0 4748 4791 734289188 734289145 5.400000e-10 76.8
2 TraesCS4A01G135200 chr4D 94.564 4470 163 32 6 4431 299174830 299170397 0.000000e+00 6835.0
3 TraesCS4A01G135200 chr4D 91.667 324 19 4 4431 4753 299136133 299135817 4.620000e-120 442.0
4 TraesCS4A01G135200 chr4D 97.561 41 1 0 4750 4790 477107840 477107880 2.510000e-08 71.3
5 TraesCS4A01G135200 chr4B 93.673 4599 194 40 1 4541 371382763 371378204 0.000000e+00 6791.0
6 TraesCS4A01G135200 chr4B 91.121 214 9 3 4587 4791 371378206 371377994 1.070000e-71 281.0
7 TraesCS4A01G135200 chr7A 95.028 181 6 1 4818 4995 54941718 54941898 1.070000e-71 281.0
8 TraesCS4A01G135200 chr7A 94.022 184 8 1 4815 4995 12804695 12804878 4.960000e-70 276.0
9 TraesCS4A01G135200 chr7A 92.513 187 11 1 4812 4995 113360266 113360452 1.070000e-66 265.0
10 TraesCS4A01G135200 chr7A 92.896 183 10 1 4816 4995 713223750 713223568 3.860000e-66 263.0
11 TraesCS4A01G135200 chr7A 92.021 188 12 1 4811 4995 463678685 463678498 1.390000e-65 261.0
12 TraesCS4A01G135200 chr2A 94.086 186 8 1 4815 4997 52271285 52271470 3.830000e-71 279.0
13 TraesCS4A01G135200 chr1A 93.989 183 8 1 4816 4995 497347998 497347816 1.780000e-69 274.0
14 TraesCS4A01G135200 chr1A 97.727 44 1 0 4747 4790 474384745 474384788 5.400000e-10 76.8
15 TraesCS4A01G135200 chr5A 93.923 181 8 1 4818 4995 708804184 708804004 2.310000e-68 270.0
16 TraesCS4A01G135200 chr5A 92.308 39 3 0 4780 4818 559091977 559092015 7.030000e-04 56.5
17 TraesCS4A01G135200 chr3A 91.623 191 10 3 4818 5005 7575526 7575339 4.990000e-65 259.0
18 TraesCS4A01G135200 chr5D 97.619 42 1 0 4749 4790 554366993 554366952 6.980000e-09 73.1
19 TraesCS4A01G135200 chrUn 97.561 41 1 0 4750 4790 42479324 42479284 2.510000e-08 71.3
20 TraesCS4A01G135200 chrUn 100.000 31 0 0 4789 4819 230305063 230305033 1.950000e-04 58.4
21 TraesCS4A01G135200 chrUn 100.000 31 0 0 4789 4819 347349735 347349705 1.950000e-04 58.4
22 TraesCS4A01G135200 chr7D 97.561 41 1 0 4750 4790 102542911 102542951 2.510000e-08 71.3
23 TraesCS4A01G135200 chr3D 97.561 41 1 0 4750 4790 147821508 147821548 2.510000e-08 71.3
24 TraesCS4A01G135200 chr3D 100.000 33 0 0 4787 4819 165857751 165857783 1.510000e-05 62.1
25 TraesCS4A01G135200 chr3B 93.617 47 1 2 4745 4790 199529294 199529339 9.030000e-08 69.4
26 TraesCS4A01G135200 chr6B 100.000 31 0 0 4789 4819 36470617 36470647 1.950000e-04 58.4
27 TraesCS4A01G135200 chr1B 100.000 31 0 0 4789 4819 59996061 59996091 1.950000e-04 58.4
28 TraesCS4A01G135200 chr1B 100.000 30 0 0 4789 4818 433102878 433102849 7.030000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G135200 chr4A 185986338 185991364 5026 False 9284 9284 100.000 1 5027 1 chr4A.!!$F1 5026
1 TraesCS4A01G135200 chr4D 299170397 299174830 4433 True 6835 6835 94.564 6 4431 1 chr4D.!!$R2 4425
2 TraesCS4A01G135200 chr4B 371377994 371382763 4769 True 3536 6791 92.397 1 4791 2 chr4B.!!$R1 4790

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
513 528 0.179134 CCGTCCGATCACTTCTGTCC 60.179 60.0 0.0 0.0 0.0 4.02 F
796 838 0.328548 ATTTGTAGGGGAGGGGAGGG 60.329 60.0 0.0 0.0 0.0 4.30 F
965 1015 0.381801 CTTCTTGTTGCCGTGCTGTT 59.618 50.0 0.0 0.0 0.0 3.16 F
2443 2493 0.179062 GATCGGTGATTGCTCTGCCT 60.179 55.0 0.0 0.0 0.0 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2409 2459 0.179018 CGATCTGGGGTGGGATTTCC 60.179 60.0 0.00 0.0 0.00 3.13 R
2427 2477 0.674581 TCAAGGCAGAGCAATCACCG 60.675 55.0 0.00 0.0 0.00 4.94 R
2733 2793 1.290134 AAAAGCTACCAGGAGGGAGG 58.710 55.0 0.00 0.0 46.95 4.30 R
4046 4115 0.035458 AACAAGGCCTGACGAGAAGG 59.965 55.0 5.69 0.0 37.91 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 5.391523 CGGTCATGTTTGTATGAAATTCGGT 60.392 40.000 0.00 0.00 38.69 4.69
33 34 4.655440 TTGTATGAAATTCGGTCGTGTG 57.345 40.909 0.00 0.00 0.00 3.82
104 105 2.658593 CGTTAGATGGCGGCCTCG 60.659 66.667 21.46 10.94 39.81 4.63
114 115 2.499205 CGGCCTCGTGCATCCTTA 59.501 61.111 0.00 0.00 43.89 2.69
117 118 0.394565 GGCCTCGTGCATCCTTATCT 59.605 55.000 0.00 0.00 43.89 1.98
161 166 2.043980 GCGGGAGGAAATTTGCGGA 61.044 57.895 3.87 0.00 0.00 5.54
162 167 1.800681 CGGGAGGAAATTTGCGGAC 59.199 57.895 3.87 0.73 0.00 4.79
163 168 1.800681 GGGAGGAAATTTGCGGACG 59.199 57.895 3.87 0.00 0.00 4.79
164 172 0.675522 GGGAGGAAATTTGCGGACGA 60.676 55.000 3.87 0.00 0.00 4.20
170 178 1.460359 GAAATTTGCGGACGACGGTTA 59.540 47.619 0.00 0.00 44.51 2.85
178 186 0.248949 GGACGACGGTTAGAGATGCC 60.249 60.000 0.00 0.00 0.00 4.40
449 464 2.032185 CTAACTTTTAGCCCGCGCGG 62.032 60.000 41.00 41.00 41.18 6.46
507 522 1.153369 CATGGCCGTCCGATCACTT 60.153 57.895 0.00 0.00 34.14 3.16
511 526 1.215647 GCCGTCCGATCACTTCTGT 59.784 57.895 0.00 0.00 0.00 3.41
512 527 0.802607 GCCGTCCGATCACTTCTGTC 60.803 60.000 0.00 0.00 0.00 3.51
513 528 0.179134 CCGTCCGATCACTTCTGTCC 60.179 60.000 0.00 0.00 0.00 4.02
514 529 0.811915 CGTCCGATCACTTCTGTCCT 59.188 55.000 0.00 0.00 0.00 3.85
515 530 1.468224 CGTCCGATCACTTCTGTCCTG 60.468 57.143 0.00 0.00 0.00 3.86
591 618 3.103911 CACGGTTCGCTCGACACC 61.104 66.667 11.11 11.11 0.00 4.16
595 622 2.029964 GTTCGCTCGACACCCCAA 59.970 61.111 0.00 0.00 0.00 4.12
596 623 2.029964 TTCGCTCGACACCCCAAC 59.970 61.111 0.00 0.00 0.00 3.77
599 626 4.717313 GCTCGACACCCCAACCCC 62.717 72.222 0.00 0.00 0.00 4.95
600 627 2.928396 CTCGACACCCCAACCCCT 60.928 66.667 0.00 0.00 0.00 4.79
603 630 2.033602 GACACCCCAACCCCTTCG 59.966 66.667 0.00 0.00 0.00 3.79
605 632 3.966543 CACCCCAACCCCTTCGCT 61.967 66.667 0.00 0.00 0.00 4.93
608 635 3.330720 CCCAACCCCTTCGCTCCT 61.331 66.667 0.00 0.00 0.00 3.69
609 636 2.269241 CCAACCCCTTCGCTCCTC 59.731 66.667 0.00 0.00 0.00 3.71
610 637 2.294078 CCAACCCCTTCGCTCCTCT 61.294 63.158 0.00 0.00 0.00 3.69
681 713 3.530527 CTACAAGTAGACGGCGGAGGC 62.531 61.905 13.24 0.00 42.14 4.70
721 753 2.128507 CCCACCTCGGCTACTCCTC 61.129 68.421 0.00 0.00 0.00 3.71
794 836 2.205342 TGAATTTGTAGGGGAGGGGAG 58.795 52.381 0.00 0.00 0.00 4.30
795 837 1.495148 GAATTTGTAGGGGAGGGGAGG 59.505 57.143 0.00 0.00 0.00 4.30
796 838 0.328548 ATTTGTAGGGGAGGGGAGGG 60.329 60.000 0.00 0.00 0.00 4.30
797 839 2.501943 TTTGTAGGGGAGGGGAGGGG 62.502 65.000 0.00 0.00 0.00 4.79
798 840 3.040814 GTAGGGGAGGGGAGGGGA 61.041 72.222 0.00 0.00 0.00 4.81
799 841 2.708132 TAGGGGAGGGGAGGGGAG 60.708 72.222 0.00 0.00 0.00 4.30
877 927 1.686052 CTCTCCTAGCTCATCCGCTTT 59.314 52.381 0.00 0.00 41.30 3.51
878 928 2.887783 CTCTCCTAGCTCATCCGCTTTA 59.112 50.000 0.00 0.00 41.30 1.85
933 983 2.496817 CTCCTTCTTCCGAGCCCG 59.503 66.667 0.00 0.00 0.00 6.13
953 1003 3.139077 CGTAAAAGCCCTCACTTCTTGT 58.861 45.455 0.00 0.00 0.00 3.16
965 1015 0.381801 CTTCTTGTTGCCGTGCTGTT 59.618 50.000 0.00 0.00 0.00 3.16
966 1016 0.814457 TTCTTGTTGCCGTGCTGTTT 59.186 45.000 0.00 0.00 0.00 2.83
1533 1583 1.444553 CGCGTCTCTCAACCTGTCC 60.445 63.158 0.00 0.00 0.00 4.02
1593 1643 2.099062 CTGAATGCGCTGCGAACC 59.901 61.111 28.07 11.78 0.00 3.62
1908 1958 1.420430 TGTCGGGGAACAAGTTCTCT 58.580 50.000 12.18 0.00 39.92 3.10
1992 2042 4.966787 TTCACCGGTGGCTTGCCC 62.967 66.667 33.40 0.60 0.00 5.36
2082 2132 2.092375 GCCTACCTGGGTATTTGCTTCT 60.092 50.000 0.00 0.00 36.00 2.85
2187 2237 2.229792 GTGGACCTGTCAAGCAATTCA 58.770 47.619 0.00 0.00 0.00 2.57
2427 2477 3.829577 GGAAATCCCACCCCAGATC 57.170 57.895 0.00 0.00 34.14 2.75
2430 2480 0.919289 AAATCCCACCCCAGATCGGT 60.919 55.000 3.47 0.00 0.00 4.69
2443 2493 0.179062 GATCGGTGATTGCTCTGCCT 60.179 55.000 0.00 0.00 0.00 4.75
2445 2495 0.674581 TCGGTGATTGCTCTGCCTTG 60.675 55.000 0.00 0.00 0.00 3.61
2448 2498 1.527034 GTGATTGCTCTGCCTTGACA 58.473 50.000 0.00 0.00 0.00 3.58
2497 2549 3.802948 ATTCAACTCGATTCGCTAGGT 57.197 42.857 0.00 0.00 0.00 3.08
2498 2550 2.846039 TCAACTCGATTCGCTAGGTC 57.154 50.000 0.00 0.00 0.00 3.85
2506 2560 4.720090 TCGATTCGCTAGGTCGATATTTC 58.280 43.478 0.00 0.00 39.22 2.17
2527 2581 3.814842 TCGAGTTGTTCATGCAATTCTGT 59.185 39.130 0.00 0.00 34.34 3.41
2575 2635 2.571202 TGCAGGGATCTATCACACAACA 59.429 45.455 0.00 0.00 30.91 3.33
2578 2638 4.437239 CAGGGATCTATCACACAACAGTC 58.563 47.826 0.00 0.00 30.91 3.51
2695 2755 2.067932 CTCCAACCTTGCCCACCTCA 62.068 60.000 0.00 0.00 0.00 3.86
2698 2758 1.341080 CAACCTTGCCCACCTCATTT 58.659 50.000 0.00 0.00 0.00 2.32
2733 2793 1.049289 ATAACCAGCTCTCCGGGGAC 61.049 60.000 0.00 0.00 32.45 4.46
2833 2893 4.532126 TCAACTCATCTTGTCCTGGTGTAT 59.468 41.667 0.00 0.00 0.00 2.29
2880 2940 2.093764 AGACTCTTCTTCCAATCCGCTG 60.094 50.000 0.00 0.00 0.00 5.18
2881 2941 1.902508 ACTCTTCTTCCAATCCGCTGA 59.097 47.619 0.00 0.00 0.00 4.26
3018 3078 5.425630 ACAGTTCTTAACCTTCAAGTTCGT 58.574 37.500 0.00 0.00 0.00 3.85
3066 3135 2.817396 GCTGCGCTGGAACTCTCC 60.817 66.667 16.47 0.00 42.81 3.71
3540 3609 5.766670 CAGGCATGACATTATCCACTACAAT 59.233 40.000 0.00 0.00 0.00 2.71
3543 3612 6.148480 GGCATGACATTATCCACTACAATCTC 59.852 42.308 0.00 0.00 0.00 2.75
3546 3615 9.112725 CATGACATTATCCACTACAATCTCAAA 57.887 33.333 0.00 0.00 0.00 2.69
3766 3835 0.325671 GGAGGTCATGACAGGGAGGA 60.326 60.000 26.47 0.00 0.00 3.71
3894 3963 3.068881 TTCCCACTGGAAGAGGCG 58.931 61.111 0.00 0.00 45.88 5.52
4011 4080 2.667418 CCACAGGACAGCCCAGAG 59.333 66.667 0.00 0.00 37.41 3.35
4028 4097 1.481363 AGAGGCCGAGTTAGGTTAAGC 59.519 52.381 0.00 0.00 0.00 3.09
4036 4105 5.563280 GCCGAGTTAGGTTAAGCTCTATCTC 60.563 48.000 11.11 12.63 32.84 2.75
4046 4115 0.109532 GCTCTATCTCCTTTGGCCCC 59.890 60.000 0.00 0.00 0.00 5.80
4055 4124 1.377333 CTTTGGCCCCCTTCTCGTC 60.377 63.158 0.00 0.00 0.00 4.20
4056 4125 2.124507 CTTTGGCCCCCTTCTCGTCA 62.125 60.000 0.00 0.00 0.00 4.35
4059 4128 4.475135 GCCCCCTTCTCGTCAGGC 62.475 72.222 0.00 0.00 0.00 4.85
4095 4164 4.200092 GGGTATCCTTCTTTGCTTGGTAG 58.800 47.826 0.00 0.00 0.00 3.18
4096 4165 4.324331 GGGTATCCTTCTTTGCTTGGTAGT 60.324 45.833 0.00 0.00 0.00 2.73
4141 4227 3.954904 TGCTTTAGGTAGTAGGAGCAGAG 59.045 47.826 0.00 0.00 35.43 3.35
4144 4230 1.770294 AGGTAGTAGGAGCAGAGTGC 58.230 55.000 0.00 0.00 45.46 4.40
4164 4251 2.427506 CCAAGTGCCAACCTAGTCTTC 58.572 52.381 0.00 0.00 0.00 2.87
4185 4275 8.488764 GTCTTCGATAGGCAAGAAATTATGTAC 58.511 37.037 0.00 0.00 30.38 2.90
4188 4278 7.497595 TCGATAGGCAAGAAATTATGTACTGT 58.502 34.615 0.00 0.00 0.00 3.55
4189 4279 8.635328 TCGATAGGCAAGAAATTATGTACTGTA 58.365 33.333 0.00 0.00 0.00 2.74
4190 4280 9.256477 CGATAGGCAAGAAATTATGTACTGTAA 57.744 33.333 0.00 0.00 0.00 2.41
4193 4283 7.707104 AGGCAAGAAATTATGTACTGTAATGC 58.293 34.615 0.00 1.01 0.00 3.56
4543 4635 9.463443 AAAATTCTTGTGTATTTGTAGTGCTTC 57.537 29.630 0.00 0.00 0.00 3.86
4544 4636 7.744087 ATTCTTGTGTATTTGTAGTGCTTCA 57.256 32.000 0.00 0.00 0.00 3.02
4545 4637 6.539649 TCTTGTGTATTTGTAGTGCTTCAC 57.460 37.500 0.00 0.00 34.10 3.18
4546 4638 5.468746 TCTTGTGTATTTGTAGTGCTTCACC 59.531 40.000 0.00 0.00 34.49 4.02
4547 4639 4.968259 TGTGTATTTGTAGTGCTTCACCT 58.032 39.130 0.00 0.00 34.49 4.00
4548 4640 4.754618 TGTGTATTTGTAGTGCTTCACCTG 59.245 41.667 0.00 0.00 34.49 4.00
4549 4641 4.994852 GTGTATTTGTAGTGCTTCACCTGA 59.005 41.667 0.00 0.00 34.49 3.86
4550 4642 5.468746 GTGTATTTGTAGTGCTTCACCTGAA 59.531 40.000 0.00 0.00 34.49 3.02
4551 4643 6.017440 GTGTATTTGTAGTGCTTCACCTGAAA 60.017 38.462 0.00 0.00 34.49 2.69
4552 4644 6.714810 TGTATTTGTAGTGCTTCACCTGAAAT 59.285 34.615 0.00 0.00 34.49 2.17
4553 4645 5.437289 TTTGTAGTGCTTCACCTGAAATG 57.563 39.130 0.00 0.00 34.49 2.32
4554 4646 2.813754 TGTAGTGCTTCACCTGAAATGC 59.186 45.455 0.00 0.00 34.49 3.56
4555 4647 1.985473 AGTGCTTCACCTGAAATGCA 58.015 45.000 0.00 0.00 34.30 3.96
4556 4648 2.309613 AGTGCTTCACCTGAAATGCAA 58.690 42.857 0.00 0.00 37.10 4.08
4557 4649 2.895404 AGTGCTTCACCTGAAATGCAAT 59.105 40.909 0.00 1.24 37.10 3.56
4558 4650 2.991190 GTGCTTCACCTGAAATGCAATG 59.009 45.455 0.00 0.00 37.10 2.82
4559 4651 1.997606 GCTTCACCTGAAATGCAATGC 59.002 47.619 0.00 0.00 33.07 3.56
4560 4652 2.353406 GCTTCACCTGAAATGCAATGCT 60.353 45.455 6.82 0.00 33.07 3.79
4561 4653 3.863400 GCTTCACCTGAAATGCAATGCTT 60.863 43.478 6.82 0.00 33.07 3.91
4562 4654 4.312443 CTTCACCTGAAATGCAATGCTTT 58.688 39.130 6.82 3.26 33.07 3.51
4563 4655 4.339872 TCACCTGAAATGCAATGCTTTT 57.660 36.364 17.21 17.21 38.33 2.27
4564 4656 4.059511 TCACCTGAAATGCAATGCTTTTG 58.940 39.130 21.20 11.10 36.34 2.44
4565 4657 8.681866 CTTCACCTGAAATGCAATGCTTTTGC 62.682 42.308 21.20 15.34 36.34 3.68
4579 4671 2.995939 GCTTTTGCATTTCAGGTAAGCC 59.004 45.455 0.00 0.00 46.58 4.35
4580 4672 3.306294 GCTTTTGCATTTCAGGTAAGCCT 60.306 43.478 0.00 0.00 45.84 4.58
4581 4673 4.800582 GCTTTTGCATTTCAGGTAAGCCTT 60.801 41.667 0.00 0.00 43.82 4.35
4582 4674 3.940209 TTGCATTTCAGGTAAGCCTTG 57.060 42.857 0.00 0.00 44.18 3.61
4583 4675 2.875296 TGCATTTCAGGTAAGCCTTGT 58.125 42.857 0.00 0.00 44.18 3.16
4584 4676 4.027674 TGCATTTCAGGTAAGCCTTGTA 57.972 40.909 0.00 0.00 44.18 2.41
4585 4677 4.599041 TGCATTTCAGGTAAGCCTTGTAT 58.401 39.130 0.00 0.00 44.18 2.29
4658 4750 2.030363 TCATTTCATGTGTTCCGGCAAC 60.030 45.455 0.00 2.95 35.28 4.17
4661 4753 1.686355 TCATGTGTTCCGGCAACTTT 58.314 45.000 14.95 1.65 35.79 2.66
4662 4754 1.336440 TCATGTGTTCCGGCAACTTTG 59.664 47.619 14.95 10.68 35.79 2.77
4699 4791 4.219288 GTCATCTGGTTCAGAAATGCCTTT 59.781 41.667 1.53 0.00 44.04 3.11
4700 4792 4.460382 TCATCTGGTTCAGAAATGCCTTTC 59.540 41.667 6.37 6.37 44.04 2.62
4747 4842 4.134563 GTTGTACTTGAACCAGTCCACAT 58.865 43.478 0.00 0.00 0.00 3.21
4751 4846 3.740115 ACTTGAACCAGTCCACATGTAC 58.260 45.455 0.00 0.00 0.00 2.90
4762 4857 1.482593 CCACATGTACTCCCTCTGTCC 59.517 57.143 0.00 0.00 0.00 4.02
4784 4884 6.849305 GTCCCATAATATAAGACGTTTTTGCG 59.151 38.462 0.00 0.00 37.94 4.85
4791 4891 2.150397 AGACGTTTTTGCGAGCTACT 57.850 45.000 0.00 0.00 35.59 2.57
4792 4892 2.059541 AGACGTTTTTGCGAGCTACTC 58.940 47.619 0.00 0.00 35.59 2.59
4793 4893 1.126296 GACGTTTTTGCGAGCTACTCC 59.874 52.381 0.00 0.00 35.59 3.85
4794 4894 1.270147 ACGTTTTTGCGAGCTACTCCT 60.270 47.619 0.00 0.00 35.59 3.69
4795 4895 1.798813 CGTTTTTGCGAGCTACTCCTT 59.201 47.619 0.00 0.00 0.00 3.36
4796 4896 2.159827 CGTTTTTGCGAGCTACTCCTTC 60.160 50.000 0.00 0.00 0.00 3.46
4797 4897 2.094762 TTTTGCGAGCTACTCCTTCC 57.905 50.000 0.00 0.00 0.00 3.46
4798 4898 0.108804 TTTGCGAGCTACTCCTTCCG 60.109 55.000 0.00 0.00 0.00 4.30
4799 4899 1.248785 TTGCGAGCTACTCCTTCCGT 61.249 55.000 0.00 0.00 0.00 4.69
4800 4900 1.064458 GCGAGCTACTCCTTCCGTC 59.936 63.158 0.00 0.00 0.00 4.79
4801 4901 1.728672 CGAGCTACTCCTTCCGTCC 59.271 63.158 0.00 0.00 0.00 4.79
4802 4902 1.726533 CGAGCTACTCCTTCCGTCCC 61.727 65.000 0.00 0.00 0.00 4.46
4803 4903 0.683504 GAGCTACTCCTTCCGTCCCA 60.684 60.000 0.00 0.00 0.00 4.37
4804 4904 0.252103 AGCTACTCCTTCCGTCCCAA 60.252 55.000 0.00 0.00 0.00 4.12
4805 4905 0.611714 GCTACTCCTTCCGTCCCAAA 59.388 55.000 0.00 0.00 0.00 3.28
4806 4906 1.002773 GCTACTCCTTCCGTCCCAAAA 59.997 52.381 0.00 0.00 0.00 2.44
4807 4907 2.355818 GCTACTCCTTCCGTCCCAAAAT 60.356 50.000 0.00 0.00 0.00 1.82
4808 4908 2.971901 ACTCCTTCCGTCCCAAAATT 57.028 45.000 0.00 0.00 0.00 1.82
4809 4909 3.238788 ACTCCTTCCGTCCCAAAATTT 57.761 42.857 0.00 0.00 0.00 1.82
4810 4910 3.572642 ACTCCTTCCGTCCCAAAATTTT 58.427 40.909 0.00 0.00 0.00 1.82
4811 4911 3.964688 ACTCCTTCCGTCCCAAAATTTTT 59.035 39.130 0.00 0.00 0.00 1.94
4812 4912 4.202212 ACTCCTTCCGTCCCAAAATTTTTG 60.202 41.667 13.76 13.76 0.00 2.44
4813 4913 3.707102 TCCTTCCGTCCCAAAATTTTTGT 59.293 39.130 18.05 0.00 0.00 2.83
4814 4914 4.055360 CCTTCCGTCCCAAAATTTTTGTC 58.945 43.478 18.05 9.04 0.00 3.18
4815 4915 4.202212 CCTTCCGTCCCAAAATTTTTGTCT 60.202 41.667 18.05 0.00 0.00 3.41
4816 4916 5.346181 TTCCGTCCCAAAATTTTTGTCTT 57.654 34.783 18.05 0.00 0.00 3.01
4817 4917 6.461788 CCTTCCGTCCCAAAATTTTTGTCTTA 60.462 38.462 18.05 1.26 0.00 2.10
4818 4918 6.079424 TCCGTCCCAAAATTTTTGTCTTAG 57.921 37.500 18.05 5.02 0.00 2.18
4819 4919 5.010213 TCCGTCCCAAAATTTTTGTCTTAGG 59.990 40.000 18.05 12.45 0.00 2.69
4820 4920 4.684242 CGTCCCAAAATTTTTGTCTTAGGC 59.316 41.667 18.05 8.72 0.00 3.93
4821 4921 5.508994 CGTCCCAAAATTTTTGTCTTAGGCT 60.509 40.000 18.05 0.00 0.00 4.58
4822 4922 5.696270 GTCCCAAAATTTTTGTCTTAGGCTG 59.304 40.000 18.05 2.64 0.00 4.85
4823 4923 4.996758 CCCAAAATTTTTGTCTTAGGCTGG 59.003 41.667 18.05 7.19 0.00 4.85
4824 4924 5.454613 CCCAAAATTTTTGTCTTAGGCTGGT 60.455 40.000 18.05 0.00 0.00 4.00
4825 4925 6.054941 CCAAAATTTTTGTCTTAGGCTGGTT 58.945 36.000 18.05 0.00 0.00 3.67
4826 4926 6.018016 CCAAAATTTTTGTCTTAGGCTGGTTG 60.018 38.462 18.05 0.00 0.00 3.77
4827 4927 5.869649 AATTTTTGTCTTAGGCTGGTTGT 57.130 34.783 0.00 0.00 0.00 3.32
4828 4928 6.969993 AATTTTTGTCTTAGGCTGGTTGTA 57.030 33.333 0.00 0.00 0.00 2.41
4829 4929 6.575162 ATTTTTGTCTTAGGCTGGTTGTAG 57.425 37.500 0.00 0.00 0.00 2.74
4830 4930 4.699925 TTTGTCTTAGGCTGGTTGTAGT 57.300 40.909 0.00 0.00 0.00 2.73
4831 4931 3.678056 TGTCTTAGGCTGGTTGTAGTG 57.322 47.619 0.00 0.00 0.00 2.74
4832 4932 2.301870 TGTCTTAGGCTGGTTGTAGTGG 59.698 50.000 0.00 0.00 0.00 4.00
4833 4933 1.906574 TCTTAGGCTGGTTGTAGTGGG 59.093 52.381 0.00 0.00 0.00 4.61
4834 4934 1.906574 CTTAGGCTGGTTGTAGTGGGA 59.093 52.381 0.00 0.00 0.00 4.37
4835 4935 1.568504 TAGGCTGGTTGTAGTGGGAG 58.431 55.000 0.00 0.00 0.00 4.30
4836 4936 0.473886 AGGCTGGTTGTAGTGGGAGT 60.474 55.000 0.00 0.00 0.00 3.85
4837 4937 1.203262 AGGCTGGTTGTAGTGGGAGTA 60.203 52.381 0.00 0.00 0.00 2.59
4838 4938 1.838077 GGCTGGTTGTAGTGGGAGTAT 59.162 52.381 0.00 0.00 0.00 2.12
4839 4939 2.158943 GGCTGGTTGTAGTGGGAGTATC 60.159 54.545 0.00 0.00 0.00 2.24
4840 4940 2.500098 GCTGGTTGTAGTGGGAGTATCA 59.500 50.000 0.00 0.00 36.25 2.15
4841 4941 3.134804 GCTGGTTGTAGTGGGAGTATCAT 59.865 47.826 0.00 0.00 36.25 2.45
4842 4942 4.344102 GCTGGTTGTAGTGGGAGTATCATA 59.656 45.833 0.00 0.00 36.25 2.15
4843 4943 5.163343 GCTGGTTGTAGTGGGAGTATCATAA 60.163 44.000 0.00 0.00 36.25 1.90
4844 4944 6.479972 TGGTTGTAGTGGGAGTATCATAAG 57.520 41.667 0.00 0.00 36.25 1.73
4845 4945 5.962031 TGGTTGTAGTGGGAGTATCATAAGT 59.038 40.000 0.00 0.00 36.25 2.24
4846 4946 7.127405 TGGTTGTAGTGGGAGTATCATAAGTA 58.873 38.462 0.00 0.00 36.25 2.24
4847 4947 7.287005 TGGTTGTAGTGGGAGTATCATAAGTAG 59.713 40.741 0.00 0.00 36.25 2.57
4848 4948 7.287235 GGTTGTAGTGGGAGTATCATAAGTAGT 59.713 40.741 0.00 0.00 36.25 2.73
4849 4949 9.347240 GTTGTAGTGGGAGTATCATAAGTAGTA 57.653 37.037 0.00 0.00 36.25 1.82
4851 4951 9.736414 TGTAGTGGGAGTATCATAAGTAGTATC 57.264 37.037 0.00 0.00 36.25 2.24
4852 4952 9.736414 GTAGTGGGAGTATCATAAGTAGTATCA 57.264 37.037 0.00 0.00 36.25 2.15
4854 4954 9.249053 AGTGGGAGTATCATAAGTAGTATCATG 57.751 37.037 0.00 0.00 36.25 3.07
4855 4955 7.976734 GTGGGAGTATCATAAGTAGTATCATGC 59.023 40.741 0.00 0.00 36.25 4.06
4856 4956 7.673926 TGGGAGTATCATAAGTAGTATCATGCA 59.326 37.037 0.00 0.00 36.25 3.96
4857 4957 8.700051 GGGAGTATCATAAGTAGTATCATGCAT 58.300 37.037 0.00 0.00 36.25 3.96
4858 4958 9.526713 GGAGTATCATAAGTAGTATCATGCATG 57.473 37.037 21.07 21.07 36.25 4.06
4859 4959 8.939201 AGTATCATAAGTAGTATCATGCATGC 57.061 34.615 22.25 11.82 0.00 4.06
4860 4960 7.984050 AGTATCATAAGTAGTATCATGCATGCC 59.016 37.037 22.25 11.72 0.00 4.40
4861 4961 6.112927 TCATAAGTAGTATCATGCATGCCA 57.887 37.500 22.25 8.84 0.00 4.92
4862 4962 6.532826 TCATAAGTAGTATCATGCATGCCAA 58.467 36.000 22.25 5.34 0.00 4.52
4863 4963 6.427853 TCATAAGTAGTATCATGCATGCCAAC 59.572 38.462 22.25 17.59 0.00 3.77
4864 4964 4.428294 AGTAGTATCATGCATGCCAACT 57.572 40.909 22.25 22.78 0.00 3.16
4865 4965 5.551305 AGTAGTATCATGCATGCCAACTA 57.449 39.130 22.25 21.88 0.00 2.24
4866 4966 5.545588 AGTAGTATCATGCATGCCAACTAG 58.454 41.667 22.25 0.00 0.00 2.57
4867 4967 4.694760 AGTATCATGCATGCCAACTAGA 57.305 40.909 22.25 2.12 0.00 2.43
4868 4968 4.384056 AGTATCATGCATGCCAACTAGAC 58.616 43.478 22.25 10.78 0.00 2.59
4869 4969 3.572632 ATCATGCATGCCAACTAGACT 57.427 42.857 22.25 0.00 0.00 3.24
4870 4970 3.354948 TCATGCATGCCAACTAGACTT 57.645 42.857 22.25 0.00 0.00 3.01
4871 4971 3.273434 TCATGCATGCCAACTAGACTTC 58.727 45.455 22.25 0.00 0.00 3.01
4872 4972 3.054875 TCATGCATGCCAACTAGACTTCT 60.055 43.478 22.25 0.00 0.00 2.85
4873 4973 3.423539 TGCATGCCAACTAGACTTCTT 57.576 42.857 16.68 0.00 0.00 2.52
4874 4974 3.076621 TGCATGCCAACTAGACTTCTTG 58.923 45.455 16.68 0.00 0.00 3.02
4875 4975 3.244526 TGCATGCCAACTAGACTTCTTGA 60.245 43.478 16.68 0.00 0.00 3.02
4876 4976 3.753272 GCATGCCAACTAGACTTCTTGAA 59.247 43.478 6.36 0.00 0.00 2.69
4877 4977 4.397417 GCATGCCAACTAGACTTCTTGAAT 59.603 41.667 6.36 0.00 0.00 2.57
4878 4978 5.586243 GCATGCCAACTAGACTTCTTGAATA 59.414 40.000 6.36 0.00 0.00 1.75
4879 4979 6.094048 GCATGCCAACTAGACTTCTTGAATAA 59.906 38.462 6.36 0.00 0.00 1.40
4880 4980 7.201767 GCATGCCAACTAGACTTCTTGAATAAT 60.202 37.037 6.36 0.00 0.00 1.28
4881 4981 7.615582 TGCCAACTAGACTTCTTGAATAATG 57.384 36.000 0.00 0.00 0.00 1.90
4882 4982 7.168219 TGCCAACTAGACTTCTTGAATAATGT 58.832 34.615 0.00 0.00 0.00 2.71
4883 4983 7.119699 TGCCAACTAGACTTCTTGAATAATGTG 59.880 37.037 0.00 0.00 0.00 3.21
4884 4984 7.414540 GCCAACTAGACTTCTTGAATAATGTGG 60.415 40.741 0.00 0.00 0.00 4.17
4885 4985 7.414540 CCAACTAGACTTCTTGAATAATGTGGC 60.415 40.741 0.00 0.00 0.00 5.01
4886 4986 6.711277 ACTAGACTTCTTGAATAATGTGGCA 58.289 36.000 0.00 0.00 0.00 4.92
4887 4987 5.886960 AGACTTCTTGAATAATGTGGCAC 57.113 39.130 11.55 11.55 0.00 5.01
4888 4988 5.316167 AGACTTCTTGAATAATGTGGCACA 58.684 37.500 24.36 24.36 0.00 4.57
4904 5004 5.798125 TGGCACACAATTAAATGAGGAAA 57.202 34.783 0.00 0.00 0.00 3.13
4905 5005 5.782047 TGGCACACAATTAAATGAGGAAAG 58.218 37.500 0.00 0.00 0.00 2.62
4906 5006 5.538053 TGGCACACAATTAAATGAGGAAAGA 59.462 36.000 0.00 0.00 0.00 2.52
4907 5007 6.095377 GGCACACAATTAAATGAGGAAAGAG 58.905 40.000 0.00 0.00 0.00 2.85
4908 5008 6.071952 GGCACACAATTAAATGAGGAAAGAGA 60.072 38.462 0.00 0.00 0.00 3.10
4909 5009 7.025963 GCACACAATTAAATGAGGAAAGAGAG 58.974 38.462 0.00 0.00 0.00 3.20
4910 5010 7.533426 CACACAATTAAATGAGGAAAGAGAGG 58.467 38.462 0.00 0.00 0.00 3.69
4911 5011 7.391554 CACACAATTAAATGAGGAAAGAGAGGA 59.608 37.037 0.00 0.00 0.00 3.71
4912 5012 8.112183 ACACAATTAAATGAGGAAAGAGAGGAT 58.888 33.333 0.00 0.00 0.00 3.24
4913 5013 8.404000 CACAATTAAATGAGGAAAGAGAGGATG 58.596 37.037 0.00 0.00 0.00 3.51
4914 5014 8.112183 ACAATTAAATGAGGAAAGAGAGGATGT 58.888 33.333 0.00 0.00 0.00 3.06
4915 5015 9.618890 CAATTAAATGAGGAAAGAGAGGATGTA 57.381 33.333 0.00 0.00 0.00 2.29
4916 5016 9.844257 AATTAAATGAGGAAAGAGAGGATGTAG 57.156 33.333 0.00 0.00 0.00 2.74
4917 5017 6.882768 AAATGAGGAAAGAGAGGATGTAGT 57.117 37.500 0.00 0.00 0.00 2.73
4918 5018 5.867903 ATGAGGAAAGAGAGGATGTAGTG 57.132 43.478 0.00 0.00 0.00 2.74
4919 5019 4.678256 TGAGGAAAGAGAGGATGTAGTGT 58.322 43.478 0.00 0.00 0.00 3.55
4920 5020 5.827756 TGAGGAAAGAGAGGATGTAGTGTA 58.172 41.667 0.00 0.00 0.00 2.90
4921 5021 6.436027 TGAGGAAAGAGAGGATGTAGTGTAT 58.564 40.000 0.00 0.00 0.00 2.29
4922 5022 6.547880 TGAGGAAAGAGAGGATGTAGTGTATC 59.452 42.308 0.00 0.00 0.00 2.24
4923 5023 6.436027 AGGAAAGAGAGGATGTAGTGTATCA 58.564 40.000 0.00 0.00 0.00 2.15
4924 5024 7.072562 AGGAAAGAGAGGATGTAGTGTATCAT 58.927 38.462 0.00 0.00 0.00 2.45
4925 5025 7.015098 AGGAAAGAGAGGATGTAGTGTATCATG 59.985 40.741 0.00 0.00 0.00 3.07
4926 5026 7.014711 GGAAAGAGAGGATGTAGTGTATCATGA 59.985 40.741 0.00 0.00 0.00 3.07
4927 5027 8.489676 AAAGAGAGGATGTAGTGTATCATGAT 57.510 34.615 13.81 13.81 0.00 2.45
4928 5028 9.593565 AAAGAGAGGATGTAGTGTATCATGATA 57.406 33.333 11.49 11.49 0.00 2.15
4929 5029 8.574251 AGAGAGGATGTAGTGTATCATGATAC 57.426 38.462 30.80 30.80 42.95 2.24
4930 5030 7.613801 AGAGAGGATGTAGTGTATCATGATACC 59.386 40.741 32.93 25.51 42.19 2.73
4931 5031 6.375736 AGAGGATGTAGTGTATCATGATACCG 59.624 42.308 32.93 0.00 42.19 4.02
4932 5032 6.010850 AGGATGTAGTGTATCATGATACCGT 58.989 40.000 32.93 24.60 42.19 4.83
4933 5033 7.173032 AGGATGTAGTGTATCATGATACCGTA 58.827 38.462 32.93 23.77 42.19 4.02
4934 5034 7.834681 AGGATGTAGTGTATCATGATACCGTAT 59.165 37.037 32.93 22.32 42.19 3.06
4935 5035 8.129840 GGATGTAGTGTATCATGATACCGTATC 58.870 40.741 32.93 26.46 42.19 2.24
4966 5066 7.545362 AATGATCTACTAGTTTGTGTCATGC 57.455 36.000 0.00 0.00 0.00 4.06
4967 5067 6.036577 TGATCTACTAGTTTGTGTCATGCA 57.963 37.500 0.00 0.00 0.00 3.96
4968 5068 6.643388 TGATCTACTAGTTTGTGTCATGCAT 58.357 36.000 0.00 0.00 0.00 3.96
4969 5069 6.536224 TGATCTACTAGTTTGTGTCATGCATG 59.464 38.462 21.07 21.07 0.00 4.06
4970 5070 5.178061 TCTACTAGTTTGTGTCATGCATGG 58.822 41.667 25.97 8.61 0.00 3.66
4971 5071 2.489329 ACTAGTTTGTGTCATGCATGGC 59.511 45.455 24.40 24.40 0.00 4.40
4972 5072 1.330234 AGTTTGTGTCATGCATGGCA 58.670 45.000 29.45 29.45 44.86 4.92
4973 5073 1.687660 AGTTTGTGTCATGCATGGCAA 59.312 42.857 34.01 25.74 44.94 4.52
4974 5074 2.300723 AGTTTGTGTCATGCATGGCAAT 59.699 40.909 34.01 15.54 44.94 3.56
4975 5075 3.068560 GTTTGTGTCATGCATGGCAATT 58.931 40.909 34.01 0.00 44.94 2.32
4976 5076 4.021280 AGTTTGTGTCATGCATGGCAATTA 60.021 37.500 34.01 20.55 44.94 1.40
4977 5077 4.532314 TTGTGTCATGCATGGCAATTAA 57.468 36.364 34.01 24.54 44.94 1.40
4978 5078 4.739587 TGTGTCATGCATGGCAATTAAT 57.260 36.364 34.01 0.00 44.94 1.40
4979 5079 5.848833 TGTGTCATGCATGGCAATTAATA 57.151 34.783 34.01 14.13 44.94 0.98
4980 5080 6.218108 TGTGTCATGCATGGCAATTAATAA 57.782 33.333 34.01 7.61 44.94 1.40
4981 5081 6.274579 TGTGTCATGCATGGCAATTAATAAG 58.725 36.000 34.01 0.13 44.94 1.73
4982 5082 5.693104 GTGTCATGCATGGCAATTAATAAGG 59.307 40.000 34.01 0.00 44.94 2.69
4983 5083 4.687483 GTCATGCATGGCAATTAATAAGGC 59.313 41.667 26.04 7.25 43.62 4.35
4984 5084 4.344390 TCATGCATGGCAATTAATAAGGCA 59.656 37.500 25.97 16.08 43.62 4.75
4985 5085 4.750021 TGCATGGCAATTAATAAGGCAA 57.250 36.364 17.20 4.23 41.29 4.52
4986 5086 5.293319 TGCATGGCAATTAATAAGGCAAT 57.707 34.783 17.20 6.09 41.29 3.56
4987 5087 5.299148 TGCATGGCAATTAATAAGGCAATC 58.701 37.500 17.20 13.06 41.29 2.67
4988 5088 5.070714 TGCATGGCAATTAATAAGGCAATCT 59.929 36.000 17.20 3.25 41.29 2.40
4989 5089 6.267242 TGCATGGCAATTAATAAGGCAATCTA 59.733 34.615 17.20 5.88 41.29 1.98
4990 5090 7.153985 GCATGGCAATTAATAAGGCAATCTAA 58.846 34.615 17.20 0.00 41.29 2.10
4991 5091 7.330208 GCATGGCAATTAATAAGGCAATCTAAG 59.670 37.037 17.20 7.83 41.29 2.18
4992 5092 8.579006 CATGGCAATTAATAAGGCAATCTAAGA 58.421 33.333 17.20 0.00 41.29 2.10
4993 5093 8.710749 TGGCAATTAATAAGGCAATCTAAGAT 57.289 30.769 12.71 0.00 34.72 2.40
4994 5094 9.806448 TGGCAATTAATAAGGCAATCTAAGATA 57.194 29.630 12.71 0.00 34.72 1.98
5002 5102 9.746457 AATAAGGCAATCTAAGATATTTCCTCC 57.254 33.333 0.00 0.00 30.02 4.30
5003 5103 5.799213 AGGCAATCTAAGATATTTCCTCCG 58.201 41.667 0.00 0.00 25.19 4.63
5004 5104 5.308237 AGGCAATCTAAGATATTTCCTCCGT 59.692 40.000 0.00 0.00 25.19 4.69
5005 5105 5.639931 GGCAATCTAAGATATTTCCTCCGTC 59.360 44.000 0.00 0.00 0.00 4.79
5006 5106 6.223852 GCAATCTAAGATATTTCCTCCGTCA 58.776 40.000 0.00 0.00 0.00 4.35
5007 5107 6.146347 GCAATCTAAGATATTTCCTCCGTCAC 59.854 42.308 0.00 0.00 0.00 3.67
5008 5108 6.978674 ATCTAAGATATTTCCTCCGTCACA 57.021 37.500 0.00 0.00 0.00 3.58
5009 5109 6.392625 TCTAAGATATTTCCTCCGTCACAG 57.607 41.667 0.00 0.00 0.00 3.66
5010 5110 5.892119 TCTAAGATATTTCCTCCGTCACAGT 59.108 40.000 0.00 0.00 0.00 3.55
5011 5111 5.422214 AAGATATTTCCTCCGTCACAGTT 57.578 39.130 0.00 0.00 0.00 3.16
5012 5112 5.422214 AGATATTTCCTCCGTCACAGTTT 57.578 39.130 0.00 0.00 0.00 2.66
5013 5113 6.540438 AGATATTTCCTCCGTCACAGTTTA 57.460 37.500 0.00 0.00 0.00 2.01
5014 5114 6.574350 AGATATTTCCTCCGTCACAGTTTAG 58.426 40.000 0.00 0.00 0.00 1.85
5015 5115 4.884668 ATTTCCTCCGTCACAGTTTAGA 57.115 40.909 0.00 0.00 0.00 2.10
5016 5116 3.936372 TTCCTCCGTCACAGTTTAGAG 57.064 47.619 0.00 0.00 0.00 2.43
5017 5117 2.168496 TCCTCCGTCACAGTTTAGAGG 58.832 52.381 0.00 0.00 41.88 3.69
5018 5118 1.404315 CCTCCGTCACAGTTTAGAGGC 60.404 57.143 0.00 0.00 34.92 4.70
5019 5119 1.272490 CTCCGTCACAGTTTAGAGGCA 59.728 52.381 0.00 0.00 0.00 4.75
5020 5120 1.000506 TCCGTCACAGTTTAGAGGCAC 59.999 52.381 0.00 0.00 0.00 5.01
5021 5121 1.270094 CCGTCACAGTTTAGAGGCACA 60.270 52.381 0.00 0.00 0.00 4.57
5022 5122 2.061773 CGTCACAGTTTAGAGGCACAG 58.938 52.381 0.00 0.00 0.00 3.66
5023 5123 2.545952 CGTCACAGTTTAGAGGCACAGT 60.546 50.000 0.00 0.00 0.00 3.55
5024 5124 3.467803 GTCACAGTTTAGAGGCACAGTT 58.532 45.455 0.00 0.00 0.00 3.16
5025 5125 4.628074 GTCACAGTTTAGAGGCACAGTTA 58.372 43.478 0.00 0.00 0.00 2.24
5026 5126 5.054477 GTCACAGTTTAGAGGCACAGTTAA 58.946 41.667 0.00 0.00 0.00 2.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 5.949735 ACCGAATTTCATACAAACATGACC 58.050 37.500 0.00 0.00 34.69 4.02
23 24 0.320334 ATTCATGCACACACGACCGA 60.320 50.000 0.00 0.00 0.00 4.69
27 28 4.502171 AATGAAATTCATGCACACACGA 57.498 36.364 9.47 0.00 37.15 4.35
76 77 1.797046 CCATCTAACGCTAGCAGCATG 59.203 52.381 16.45 8.57 42.58 4.06
80 81 0.941463 CCGCCATCTAACGCTAGCAG 60.941 60.000 16.45 10.16 0.00 4.24
81 82 1.067416 CCGCCATCTAACGCTAGCA 59.933 57.895 16.45 0.00 0.00 3.49
104 105 6.541641 GGATCAATCCATAGATAAGGATGCAC 59.458 42.308 4.09 0.00 43.67 4.57
147 152 0.094730 CGTCGTCCGCAAATTTCCTC 59.905 55.000 0.00 0.00 0.00 3.71
161 166 1.028330 TCGGCATCTCTAACCGTCGT 61.028 55.000 0.00 0.00 46.92 4.34
162 167 0.311165 ATCGGCATCTCTAACCGTCG 59.689 55.000 0.00 0.00 46.92 5.12
163 168 2.510768 AATCGGCATCTCTAACCGTC 57.489 50.000 0.00 0.00 46.92 4.79
164 172 2.981859 AAATCGGCATCTCTAACCGT 57.018 45.000 0.00 0.00 46.92 4.83
170 178 3.742433 AGATCGAAAATCGGCATCTCT 57.258 42.857 0.00 0.00 40.88 3.10
178 186 5.621422 TCTTTGCTTCAAGATCGAAAATCG 58.379 37.500 0.00 0.00 42.10 3.34
185 193 5.282310 CGTTTTCATCTTTGCTTCAAGATCG 59.718 40.000 0.00 2.27 0.00 3.69
336 345 0.458669 AATAGGCTCGGTGTACGTGG 59.541 55.000 0.00 0.00 44.69 4.94
431 445 2.101835 CCGCGCGGGCTAAAAGTTA 61.102 57.895 40.50 0.00 36.88 2.24
514 529 1.299316 GAAAAGCTGCTGCAACGCA 60.299 52.632 18.42 0.27 42.74 5.24
515 530 2.018324 GGAAAAGCTGCTGCAACGC 61.018 57.895 18.42 4.61 42.74 4.84
582 609 4.717313 GGGGTTGGGGTGTCGAGC 62.717 72.222 0.00 0.00 0.00 5.03
591 618 3.330720 AGGAGCGAAGGGGTTGGG 61.331 66.667 0.00 0.00 0.00 4.12
595 622 2.364448 GGAGAGGAGCGAAGGGGT 60.364 66.667 0.00 0.00 0.00 4.95
596 623 2.042435 AGGAGAGGAGCGAAGGGG 60.042 66.667 0.00 0.00 0.00 4.79
599 626 0.106719 AGAGGAGGAGAGGAGCGAAG 60.107 60.000 0.00 0.00 0.00 3.79
600 627 0.106918 GAGAGGAGGAGAGGAGCGAA 60.107 60.000 0.00 0.00 0.00 4.70
603 630 1.528309 CGGAGAGGAGGAGAGGAGC 60.528 68.421 0.00 0.00 0.00 4.70
605 632 1.637724 GGTCGGAGAGGAGGAGAGGA 61.638 65.000 0.00 0.00 36.95 3.71
608 635 1.610327 CAGGTCGGAGAGGAGGAGA 59.390 63.158 0.00 0.00 36.95 3.71
609 636 2.124693 GCAGGTCGGAGAGGAGGAG 61.125 68.421 0.00 0.00 36.95 3.69
610 637 2.043852 GCAGGTCGGAGAGGAGGA 60.044 66.667 0.00 0.00 36.95 3.71
721 753 1.002366 CTGCGGAAATTCGGACTCTG 58.998 55.000 4.67 0.00 0.00 3.35
817 859 3.775654 CCAGAGGACCTCACGGCC 61.776 72.222 23.60 0.00 32.06 6.13
821 863 1.188219 TCTGCACCAGAGGACCTCAC 61.188 60.000 23.60 7.75 35.39 3.51
822 864 0.252421 ATCTGCACCAGAGGACCTCA 60.252 55.000 23.60 1.08 44.08 3.86
834 877 3.084039 TGGGATTCAGTCAAATCTGCAC 58.916 45.455 0.00 0.00 36.19 4.57
877 927 0.461339 GCAAGAAGGCGATTCCGGTA 60.461 55.000 0.00 0.00 38.84 4.02
878 928 1.745489 GCAAGAAGGCGATTCCGGT 60.745 57.895 0.00 0.00 38.84 5.28
899 949 0.544697 GAGGAGACGCCCCCAAAATA 59.455 55.000 0.00 0.00 37.37 1.40
933 983 4.793028 GCAACAAGAAGTGAGGGCTTTTAC 60.793 45.833 0.00 0.00 0.00 2.01
953 1003 3.910490 GCCCAAACAGCACGGCAA 61.910 61.111 0.00 0.00 41.25 4.52
972 1022 2.167075 GAGTTGGATCCCAAATGGCAAG 59.833 50.000 9.90 0.00 45.73 4.01
980 1030 1.377202 GCTGCGAGTTGGATCCCAA 60.377 57.895 9.90 0.58 41.69 4.12
1449 1499 3.319198 TTGGCCAGGGAGACGTCC 61.319 66.667 13.01 3.55 43.05 4.79
1593 1643 2.370445 ATTGCCGGAGAGGTCCAGG 61.370 63.158 5.05 0.00 44.18 4.45
1908 1958 2.366435 GACCCCGGAATCTCCCCA 60.366 66.667 0.73 0.00 31.13 4.96
2082 2132 1.896183 CGACACCCATTGCACACCA 60.896 57.895 0.00 0.00 0.00 4.17
2127 2177 1.830279 CATTCACAGGCACCATCACT 58.170 50.000 0.00 0.00 0.00 3.41
2207 2257 4.361253 GCAGTTGCGAGAGTTCCA 57.639 55.556 0.00 0.00 0.00 3.53
2409 2459 0.179018 CGATCTGGGGTGGGATTTCC 60.179 60.000 0.00 0.00 0.00 3.13
2427 2477 0.674581 TCAAGGCAGAGCAATCACCG 60.675 55.000 0.00 0.00 0.00 4.94
2430 2480 2.290450 TGATGTCAAGGCAGAGCAATCA 60.290 45.455 0.00 0.00 0.00 2.57
2443 2493 7.661437 AGATGCTTAAACTTACAGTGATGTCAA 59.339 33.333 0.00 0.00 0.00 3.18
2445 2495 7.547370 AGAGATGCTTAAACTTACAGTGATGTC 59.453 37.037 0.00 0.00 0.00 3.06
2448 2498 8.854614 AAAGAGATGCTTAAACTTACAGTGAT 57.145 30.769 0.00 0.00 35.24 3.06
2466 2516 7.043059 GCGAATCGAGTTGAATAAGAAAGAGAT 60.043 37.037 6.91 0.00 0.00 2.75
2467 2517 6.253727 GCGAATCGAGTTGAATAAGAAAGAGA 59.746 38.462 6.91 0.00 0.00 3.10
2481 2533 1.376543 TCGACCTAGCGAATCGAGTT 58.623 50.000 6.91 0.00 39.80 3.01
2498 2550 6.194463 ATTGCATGAACAACTCGAAATATCG 58.806 36.000 0.00 0.00 40.41 2.92
2506 2560 4.083643 AGACAGAATTGCATGAACAACTCG 60.084 41.667 0.00 0.00 31.31 4.18
2599 2659 2.099756 GGTTGGTGAGATTGGCTATTGC 59.900 50.000 0.00 0.00 38.76 3.56
2695 2755 7.215789 TGGTTATGTGAAATGTTGAAGCAAAT 58.784 30.769 0.00 0.00 0.00 2.32
2698 2758 5.771469 CTGGTTATGTGAAATGTTGAAGCA 58.229 37.500 0.00 0.00 0.00 3.91
2733 2793 1.290134 AAAAGCTACCAGGAGGGAGG 58.710 55.000 0.00 0.00 46.95 4.30
2833 2893 8.164733 TGGATTCAGTACAATTGGTTTAGGTAA 58.835 33.333 10.83 0.00 0.00 2.85
2838 2898 7.458397 AGTCTGGATTCAGTACAATTGGTTTA 58.542 34.615 10.83 0.00 41.59 2.01
3018 3078 0.329261 CAGAATGAGAACCTGGGGCA 59.671 55.000 0.00 0.00 39.69 5.36
3066 3135 4.155826 GGAGACTGACTGAGATATCCATCG 59.844 50.000 0.00 0.00 36.20 3.84
3619 3688 4.873827 GCTTAGAACATACCGATCCAACAA 59.126 41.667 0.00 0.00 0.00 2.83
3766 3835 2.024176 TCCATGTACTCCACTGGTGT 57.976 50.000 7.88 7.88 33.75 4.16
3894 3963 4.273318 AGCCAAGTTTCATGATAGGAACC 58.727 43.478 0.00 0.00 0.00 3.62
3900 3969 7.759489 ACAAACTAAGCCAAGTTTCATGATA 57.241 32.000 10.28 0.00 45.59 2.15
4011 4080 1.481363 AGAGCTTAACCTAACTCGGCC 59.519 52.381 0.00 0.00 34.31 6.13
4017 4086 6.987404 CCAAAGGAGATAGAGCTTAACCTAAC 59.013 42.308 0.00 0.00 0.00 2.34
4028 4097 0.767998 GGGGGCCAAAGGAGATAGAG 59.232 60.000 4.39 0.00 0.00 2.43
4036 4105 2.044946 CGAGAAGGGGGCCAAAGG 60.045 66.667 4.39 0.00 0.00 3.11
4046 4115 0.035458 AACAAGGCCTGACGAGAAGG 59.965 55.000 5.69 0.00 37.91 3.46
4055 4124 2.104622 ACCCAAAATGAAACAAGGCCTG 59.895 45.455 5.69 2.82 0.00 4.85
4056 4125 2.407562 ACCCAAAATGAAACAAGGCCT 58.592 42.857 0.00 0.00 0.00 5.19
4059 4128 6.211384 AGAAGGATACCCAAAATGAAACAAGG 59.789 38.462 0.00 0.00 33.88 3.61
4095 4164 8.279103 GCACACTAGATAGAATGCTTAAATGAC 58.721 37.037 0.00 0.00 35.95 3.06
4096 4165 8.206867 AGCACACTAGATAGAATGCTTAAATGA 58.793 33.333 13.35 0.00 41.63 2.57
4106 4175 8.770010 ACTACCTAAAGCACACTAGATAGAAT 57.230 34.615 0.00 0.00 0.00 2.40
4144 4230 2.427506 GAAGACTAGGTTGGCACTTGG 58.572 52.381 0.00 0.00 0.00 3.61
4164 4251 7.715265 ACAGTACATAATTTCTTGCCTATCG 57.285 36.000 0.00 0.00 0.00 2.92
4185 4275 3.009723 AGACCGTTGGAATGCATTACAG 58.990 45.455 23.11 14.96 31.11 2.74
4188 4278 3.342377 TGAGACCGTTGGAATGCATTA 57.658 42.857 12.97 0.00 0.00 1.90
4189 4279 2.198827 TGAGACCGTTGGAATGCATT 57.801 45.000 12.83 12.83 0.00 3.56
4190 4280 2.019249 CATGAGACCGTTGGAATGCAT 58.981 47.619 0.00 0.00 0.00 3.96
4191 4281 1.452110 CATGAGACCGTTGGAATGCA 58.548 50.000 0.00 0.00 0.00 3.96
4192 4282 0.734889 CCATGAGACCGTTGGAATGC 59.265 55.000 0.00 0.00 31.94 3.56
4193 4283 0.734889 GCCATGAGACCGTTGGAATG 59.265 55.000 0.00 0.00 31.94 2.67
4316 4406 4.950475 TGGACAAGACACCACAAAAATACA 59.050 37.500 0.00 0.00 0.00 2.29
4342 4433 6.537660 ACTGAAACTAACAACTACAGACAACC 59.462 38.462 0.00 0.00 0.00 3.77
4489 4580 8.567285 AGTAGCTCAAGTGCATATAAAGTTTT 57.433 30.769 0.00 0.00 34.99 2.43
4536 4628 1.985473 TGCATTTCAGGTGAAGCACT 58.015 45.000 3.25 0.00 32.56 4.40
4538 4630 2.610976 GCATTGCATTTCAGGTGAAGCA 60.611 45.455 3.15 3.25 34.69 3.91
4539 4631 1.997606 GCATTGCATTTCAGGTGAAGC 59.002 47.619 3.15 0.00 35.21 3.86
4540 4632 3.587797 AGCATTGCATTTCAGGTGAAG 57.412 42.857 11.91 0.00 35.21 3.02
4541 4633 4.339872 AAAGCATTGCATTTCAGGTGAA 57.660 36.364 11.91 0.00 0.00 3.18
4542 4634 4.059511 CAAAAGCATTGCATTTCAGGTGA 58.940 39.130 11.91 0.00 26.68 4.02
4543 4635 3.364565 GCAAAAGCATTGCATTTCAGGTG 60.365 43.478 18.87 1.41 44.34 4.00
4544 4636 2.809696 GCAAAAGCATTGCATTTCAGGT 59.190 40.909 18.87 0.00 44.34 4.00
4545 4637 3.465122 GCAAAAGCATTGCATTTCAGG 57.535 42.857 18.87 1.50 44.34 3.86
4553 4645 2.809696 ACCTGAAATGCAAAAGCATTGC 59.190 40.909 15.48 17.45 45.11 3.56
4554 4646 5.390145 GCTTACCTGAAATGCAAAAGCATTG 60.390 40.000 15.48 6.58 39.90 2.82
4555 4647 4.692155 GCTTACCTGAAATGCAAAAGCATT 59.308 37.500 9.68 9.68 41.51 3.56
4556 4648 4.248058 GCTTACCTGAAATGCAAAAGCAT 58.752 39.130 0.00 0.00 37.06 3.79
4557 4649 3.554752 GGCTTACCTGAAATGCAAAAGCA 60.555 43.478 0.00 0.00 38.00 3.91
4558 4650 2.995939 GGCTTACCTGAAATGCAAAAGC 59.004 45.455 0.00 0.00 36.68 3.51
4572 4664 1.021968 CCGGCAATACAAGGCTTACC 58.978 55.000 0.00 0.00 0.00 2.85
4573 4665 1.940613 CTCCGGCAATACAAGGCTTAC 59.059 52.381 0.00 0.00 0.00 2.34
4574 4666 1.834896 TCTCCGGCAATACAAGGCTTA 59.165 47.619 0.00 0.00 0.00 3.09
4575 4667 0.618458 TCTCCGGCAATACAAGGCTT 59.382 50.000 0.00 0.00 0.00 4.35
4576 4668 0.618458 TTCTCCGGCAATACAAGGCT 59.382 50.000 0.00 0.00 0.00 4.58
4577 4669 1.132453 GTTTCTCCGGCAATACAAGGC 59.868 52.381 0.00 0.00 0.00 4.35
4578 4670 2.678336 GAGTTTCTCCGGCAATACAAGG 59.322 50.000 0.00 0.00 0.00 3.61
4579 4671 2.678336 GGAGTTTCTCCGGCAATACAAG 59.322 50.000 0.00 0.00 41.08 3.16
4580 4672 2.706890 GGAGTTTCTCCGGCAATACAA 58.293 47.619 0.00 0.00 41.08 2.41
4581 4673 2.396590 GGAGTTTCTCCGGCAATACA 57.603 50.000 0.00 0.00 41.08 2.29
4762 4857 6.573725 GCTCGCAAAAACGTCTTATATTATGG 59.426 38.462 0.00 0.00 0.00 2.74
4784 4884 0.683504 TGGGACGGAAGGAGTAGCTC 60.684 60.000 0.00 0.00 0.00 4.09
4791 4891 3.707102 ACAAAAATTTTGGGACGGAAGGA 59.293 39.130 20.79 0.00 0.00 3.36
4792 4892 4.055360 GACAAAAATTTTGGGACGGAAGG 58.945 43.478 20.79 0.00 0.00 3.46
4793 4893 4.944048 AGACAAAAATTTTGGGACGGAAG 58.056 39.130 20.79 0.00 0.00 3.46
4794 4894 5.346181 AAGACAAAAATTTTGGGACGGAA 57.654 34.783 20.79 0.00 0.00 4.30
4795 4895 5.010213 CCTAAGACAAAAATTTTGGGACGGA 59.990 40.000 20.79 2.59 0.00 4.69
4796 4896 5.227152 CCTAAGACAAAAATTTTGGGACGG 58.773 41.667 20.79 11.10 0.00 4.79
4797 4897 4.684242 GCCTAAGACAAAAATTTTGGGACG 59.316 41.667 20.79 6.70 0.00 4.79
4798 4898 5.696270 CAGCCTAAGACAAAAATTTTGGGAC 59.304 40.000 20.79 12.19 0.00 4.46
4799 4899 5.221621 CCAGCCTAAGACAAAAATTTTGGGA 60.222 40.000 20.79 4.12 0.00 4.37
4800 4900 4.996758 CCAGCCTAAGACAAAAATTTTGGG 59.003 41.667 20.79 13.17 0.00 4.12
4801 4901 5.610398 ACCAGCCTAAGACAAAAATTTTGG 58.390 37.500 20.79 3.67 0.00 3.28
4802 4902 6.538381 ACAACCAGCCTAAGACAAAAATTTTG 59.462 34.615 16.06 16.06 0.00 2.44
4803 4903 6.649155 ACAACCAGCCTAAGACAAAAATTTT 58.351 32.000 0.00 0.00 0.00 1.82
4804 4904 6.233905 ACAACCAGCCTAAGACAAAAATTT 57.766 33.333 0.00 0.00 0.00 1.82
4805 4905 5.869649 ACAACCAGCCTAAGACAAAAATT 57.130 34.783 0.00 0.00 0.00 1.82
4806 4906 6.016276 CACTACAACCAGCCTAAGACAAAAAT 60.016 38.462 0.00 0.00 0.00 1.82
4807 4907 5.298276 CACTACAACCAGCCTAAGACAAAAA 59.702 40.000 0.00 0.00 0.00 1.94
4808 4908 4.819630 CACTACAACCAGCCTAAGACAAAA 59.180 41.667 0.00 0.00 0.00 2.44
4809 4909 4.385825 CACTACAACCAGCCTAAGACAAA 58.614 43.478 0.00 0.00 0.00 2.83
4810 4910 3.244422 CCACTACAACCAGCCTAAGACAA 60.244 47.826 0.00 0.00 0.00 3.18
4811 4911 2.301870 CCACTACAACCAGCCTAAGACA 59.698 50.000 0.00 0.00 0.00 3.41
4812 4912 2.354805 CCCACTACAACCAGCCTAAGAC 60.355 54.545 0.00 0.00 0.00 3.01
4813 4913 1.906574 CCCACTACAACCAGCCTAAGA 59.093 52.381 0.00 0.00 0.00 2.10
4814 4914 1.906574 TCCCACTACAACCAGCCTAAG 59.093 52.381 0.00 0.00 0.00 2.18
4815 4915 1.906574 CTCCCACTACAACCAGCCTAA 59.093 52.381 0.00 0.00 0.00 2.69
4816 4916 1.203262 ACTCCCACTACAACCAGCCTA 60.203 52.381 0.00 0.00 0.00 3.93
4817 4917 0.473886 ACTCCCACTACAACCAGCCT 60.474 55.000 0.00 0.00 0.00 4.58
4818 4918 1.272807 TACTCCCACTACAACCAGCC 58.727 55.000 0.00 0.00 0.00 4.85
4819 4919 2.500098 TGATACTCCCACTACAACCAGC 59.500 50.000 0.00 0.00 0.00 4.85
4820 4920 6.098409 ACTTATGATACTCCCACTACAACCAG 59.902 42.308 0.00 0.00 0.00 4.00
4821 4921 5.962031 ACTTATGATACTCCCACTACAACCA 59.038 40.000 0.00 0.00 0.00 3.67
4822 4922 6.481434 ACTTATGATACTCCCACTACAACC 57.519 41.667 0.00 0.00 0.00 3.77
4823 4923 8.235359 ACTACTTATGATACTCCCACTACAAC 57.765 38.462 0.00 0.00 0.00 3.32
4825 4925 9.736414 GATACTACTTATGATACTCCCACTACA 57.264 37.037 0.00 0.00 0.00 2.74
4826 4926 9.736414 TGATACTACTTATGATACTCCCACTAC 57.264 37.037 0.00 0.00 0.00 2.73
4828 4928 9.249053 CATGATACTACTTATGATACTCCCACT 57.751 37.037 0.00 0.00 0.00 4.00
4829 4929 7.976734 GCATGATACTACTTATGATACTCCCAC 59.023 40.741 0.00 0.00 0.00 4.61
4830 4930 7.673926 TGCATGATACTACTTATGATACTCCCA 59.326 37.037 0.00 0.00 0.00 4.37
4831 4931 8.067751 TGCATGATACTACTTATGATACTCCC 57.932 38.462 0.00 0.00 0.00 4.30
4832 4932 9.526713 CATGCATGATACTACTTATGATACTCC 57.473 37.037 22.59 0.00 0.00 3.85
4833 4933 9.029243 GCATGCATGATACTACTTATGATACTC 57.971 37.037 30.64 1.38 0.00 2.59
4834 4934 7.984050 GGCATGCATGATACTACTTATGATACT 59.016 37.037 30.64 0.00 0.00 2.12
4835 4935 7.765819 TGGCATGCATGATACTACTTATGATAC 59.234 37.037 30.64 5.71 0.00 2.24
4836 4936 7.850193 TGGCATGCATGATACTACTTATGATA 58.150 34.615 30.64 0.00 0.00 2.15
4837 4937 6.714278 TGGCATGCATGATACTACTTATGAT 58.286 36.000 30.64 0.00 0.00 2.45
4838 4938 6.112927 TGGCATGCATGATACTACTTATGA 57.887 37.500 30.64 0.00 0.00 2.15
4839 4939 6.429078 AGTTGGCATGCATGATACTACTTATG 59.571 38.462 30.64 0.23 0.00 1.90
4840 4940 6.537355 AGTTGGCATGCATGATACTACTTAT 58.463 36.000 30.64 7.86 0.00 1.73
4841 4941 5.928976 AGTTGGCATGCATGATACTACTTA 58.071 37.500 30.64 2.53 0.00 2.24
4842 4942 4.785301 AGTTGGCATGCATGATACTACTT 58.215 39.130 30.64 11.99 0.00 2.24
4843 4943 4.428294 AGTTGGCATGCATGATACTACT 57.572 40.909 30.64 23.73 0.00 2.57
4844 4944 5.406780 GTCTAGTTGGCATGCATGATACTAC 59.593 44.000 30.64 22.16 0.00 2.73
4845 4945 5.305386 AGTCTAGTTGGCATGCATGATACTA 59.695 40.000 30.64 25.87 0.00 1.82
4846 4946 4.102210 AGTCTAGTTGGCATGCATGATACT 59.898 41.667 30.64 26.11 0.00 2.12
4847 4947 4.384056 AGTCTAGTTGGCATGCATGATAC 58.616 43.478 30.64 21.28 0.00 2.24
4848 4948 4.694760 AGTCTAGTTGGCATGCATGATA 57.305 40.909 30.64 14.66 0.00 2.15
4849 4949 3.572632 AGTCTAGTTGGCATGCATGAT 57.427 42.857 30.64 11.73 0.00 2.45
4850 4950 3.054875 AGAAGTCTAGTTGGCATGCATGA 60.055 43.478 30.64 7.50 0.00 3.07
4851 4951 3.276857 AGAAGTCTAGTTGGCATGCATG 58.723 45.455 22.70 22.70 0.00 4.06
4852 4952 3.641434 AGAAGTCTAGTTGGCATGCAT 57.359 42.857 21.36 4.57 0.00 3.96
4853 4953 3.076621 CAAGAAGTCTAGTTGGCATGCA 58.923 45.455 21.36 2.54 0.00 3.96
4854 4954 3.338249 TCAAGAAGTCTAGTTGGCATGC 58.662 45.455 9.90 9.90 0.00 4.06
4855 4955 7.615582 TTATTCAAGAAGTCTAGTTGGCATG 57.384 36.000 0.00 0.00 0.00 4.06
4856 4956 7.831193 ACATTATTCAAGAAGTCTAGTTGGCAT 59.169 33.333 0.00 0.00 0.00 4.40
4857 4957 7.119699 CACATTATTCAAGAAGTCTAGTTGGCA 59.880 37.037 0.00 0.00 0.00 4.92
4858 4958 7.414540 CCACATTATTCAAGAAGTCTAGTTGGC 60.415 40.741 0.00 0.00 0.00 4.52
4859 4959 7.414540 GCCACATTATTCAAGAAGTCTAGTTGG 60.415 40.741 0.00 0.00 0.00 3.77
4860 4960 7.119699 TGCCACATTATTCAAGAAGTCTAGTTG 59.880 37.037 0.00 0.00 0.00 3.16
4861 4961 7.119846 GTGCCACATTATTCAAGAAGTCTAGTT 59.880 37.037 0.00 0.00 0.00 2.24
4862 4962 6.595716 GTGCCACATTATTCAAGAAGTCTAGT 59.404 38.462 0.00 0.00 0.00 2.57
4863 4963 6.595326 TGTGCCACATTATTCAAGAAGTCTAG 59.405 38.462 0.00 0.00 0.00 2.43
4864 4964 6.371548 GTGTGCCACATTATTCAAGAAGTCTA 59.628 38.462 0.00 0.00 34.08 2.59
4865 4965 5.182001 GTGTGCCACATTATTCAAGAAGTCT 59.818 40.000 0.00 0.00 34.08 3.24
4866 4966 5.048782 TGTGTGCCACATTATTCAAGAAGTC 60.049 40.000 0.00 0.00 39.62 3.01
4867 4967 4.826733 TGTGTGCCACATTATTCAAGAAGT 59.173 37.500 0.00 0.00 39.62 3.01
4868 4968 5.375417 TGTGTGCCACATTATTCAAGAAG 57.625 39.130 0.00 0.00 39.62 2.85
4869 4969 5.781210 TTGTGTGCCACATTATTCAAGAA 57.219 34.783 0.00 0.00 44.16 2.52
4870 4970 5.981088 ATTGTGTGCCACATTATTCAAGA 57.019 34.783 0.00 0.00 44.16 3.02
4871 4971 8.531622 TTTAATTGTGTGCCACATTATTCAAG 57.468 30.769 0.00 0.00 44.16 3.02
4872 4972 8.933807 CATTTAATTGTGTGCCACATTATTCAA 58.066 29.630 0.00 0.05 44.16 2.69
4873 4973 8.309656 TCATTTAATTGTGTGCCACATTATTCA 58.690 29.630 0.00 0.00 44.16 2.57
4874 4974 8.700722 TCATTTAATTGTGTGCCACATTATTC 57.299 30.769 0.00 0.00 44.16 1.75
4875 4975 7.765360 CCTCATTTAATTGTGTGCCACATTATT 59.235 33.333 0.00 6.70 44.16 1.40
4876 4976 7.123997 TCCTCATTTAATTGTGTGCCACATTAT 59.876 33.333 0.00 0.00 44.16 1.28
4877 4977 6.435591 TCCTCATTTAATTGTGTGCCACATTA 59.564 34.615 0.00 0.00 44.16 1.90
4878 4978 5.245751 TCCTCATTTAATTGTGTGCCACATT 59.754 36.000 0.00 0.00 44.16 2.71
4879 4979 4.771577 TCCTCATTTAATTGTGTGCCACAT 59.228 37.500 0.00 0.00 44.16 3.21
4880 4980 4.148079 TCCTCATTTAATTGTGTGCCACA 58.852 39.130 0.00 0.00 43.02 4.17
4881 4981 4.782019 TCCTCATTTAATTGTGTGCCAC 57.218 40.909 0.00 0.00 34.56 5.01
4882 4982 5.538053 TCTTTCCTCATTTAATTGTGTGCCA 59.462 36.000 0.00 0.00 0.00 4.92
4883 4983 6.024552 TCTTTCCTCATTTAATTGTGTGCC 57.975 37.500 0.00 0.00 0.00 5.01
4884 4984 6.913170 TCTCTTTCCTCATTTAATTGTGTGC 58.087 36.000 0.00 0.00 0.00 4.57
4885 4985 7.391554 TCCTCTCTTTCCTCATTTAATTGTGTG 59.608 37.037 0.00 0.00 0.00 3.82
4886 4986 7.461749 TCCTCTCTTTCCTCATTTAATTGTGT 58.538 34.615 0.00 0.00 0.00 3.72
4887 4987 7.928307 TCCTCTCTTTCCTCATTTAATTGTG 57.072 36.000 0.00 0.00 0.00 3.33
4888 4988 8.112183 ACATCCTCTCTTTCCTCATTTAATTGT 58.888 33.333 0.00 0.00 0.00 2.71
4889 4989 8.517062 ACATCCTCTCTTTCCTCATTTAATTG 57.483 34.615 0.00 0.00 0.00 2.32
4890 4990 9.844257 CTACATCCTCTCTTTCCTCATTTAATT 57.156 33.333 0.00 0.00 0.00 1.40
4891 4991 8.997734 ACTACATCCTCTCTTTCCTCATTTAAT 58.002 33.333 0.00 0.00 0.00 1.40
4892 4992 8.260818 CACTACATCCTCTCTTTCCTCATTTAA 58.739 37.037 0.00 0.00 0.00 1.52
4893 4993 7.400339 ACACTACATCCTCTCTTTCCTCATTTA 59.600 37.037 0.00 0.00 0.00 1.40
4894 4994 6.214412 ACACTACATCCTCTCTTTCCTCATTT 59.786 38.462 0.00 0.00 0.00 2.32
4895 4995 5.723887 ACACTACATCCTCTCTTTCCTCATT 59.276 40.000 0.00 0.00 0.00 2.57
4896 4996 5.276440 ACACTACATCCTCTCTTTCCTCAT 58.724 41.667 0.00 0.00 0.00 2.90
4897 4997 4.678256 ACACTACATCCTCTCTTTCCTCA 58.322 43.478 0.00 0.00 0.00 3.86
4898 4998 6.547880 TGATACACTACATCCTCTCTTTCCTC 59.452 42.308 0.00 0.00 0.00 3.71
4899 4999 6.436027 TGATACACTACATCCTCTCTTTCCT 58.564 40.000 0.00 0.00 0.00 3.36
4900 5000 6.716934 TGATACACTACATCCTCTCTTTCC 57.283 41.667 0.00 0.00 0.00 3.13
4901 5001 7.946207 TCATGATACACTACATCCTCTCTTTC 58.054 38.462 0.00 0.00 0.00 2.62
4902 5002 7.904558 TCATGATACACTACATCCTCTCTTT 57.095 36.000 0.00 0.00 0.00 2.52
4903 5003 9.019656 GTATCATGATACACTACATCCTCTCTT 57.980 37.037 31.92 0.00 42.37 2.85
4904 5004 7.613801 GGTATCATGATACACTACATCCTCTCT 59.386 40.741 35.28 3.48 44.09 3.10
4905 5005 7.414651 CGGTATCATGATACACTACATCCTCTC 60.415 44.444 35.28 18.62 44.09 3.20
4906 5006 6.375736 CGGTATCATGATACACTACATCCTCT 59.624 42.308 35.28 4.16 44.09 3.69
4907 5007 6.151312 ACGGTATCATGATACACTACATCCTC 59.849 42.308 35.28 19.17 44.09 3.71
4908 5008 6.010850 ACGGTATCATGATACACTACATCCT 58.989 40.000 35.28 12.52 44.09 3.24
4909 5009 6.268825 ACGGTATCATGATACACTACATCC 57.731 41.667 35.28 20.75 44.09 3.51
4910 5010 8.674607 TGATACGGTATCATGATACACTACATC 58.325 37.037 35.28 27.87 44.09 3.06
4911 5011 8.575649 TGATACGGTATCATGATACACTACAT 57.424 34.615 35.28 23.57 44.09 2.29
4912 5012 7.989416 TGATACGGTATCATGATACACTACA 57.011 36.000 35.28 26.08 44.09 2.74
4940 5040 9.098355 GCATGACACAAACTAGTAGATCATTTA 57.902 33.333 3.59 0.00 0.00 1.40
4941 5041 7.607607 TGCATGACACAAACTAGTAGATCATTT 59.392 33.333 3.59 0.00 0.00 2.32
4942 5042 7.105588 TGCATGACACAAACTAGTAGATCATT 58.894 34.615 3.59 0.00 0.00 2.57
4943 5043 6.643388 TGCATGACACAAACTAGTAGATCAT 58.357 36.000 3.59 5.15 0.00 2.45
4944 5044 6.036577 TGCATGACACAAACTAGTAGATCA 57.963 37.500 3.59 3.08 0.00 2.92
4945 5045 6.018425 CCATGCATGACACAAACTAGTAGATC 60.018 42.308 28.31 0.00 0.00 2.75
4946 5046 5.819379 CCATGCATGACACAAACTAGTAGAT 59.181 40.000 28.31 0.00 0.00 1.98
4947 5047 5.178061 CCATGCATGACACAAACTAGTAGA 58.822 41.667 28.31 0.00 0.00 2.59
4948 5048 4.201851 GCCATGCATGACACAAACTAGTAG 60.202 45.833 28.31 6.84 0.00 2.57
4949 5049 3.689161 GCCATGCATGACACAAACTAGTA 59.311 43.478 28.31 0.00 0.00 1.82
4950 5050 2.489329 GCCATGCATGACACAAACTAGT 59.511 45.455 28.31 0.00 0.00 2.57
4951 5051 2.488937 TGCCATGCATGACACAAACTAG 59.511 45.455 28.31 8.01 31.71 2.57
4952 5052 2.512705 TGCCATGCATGACACAAACTA 58.487 42.857 28.31 0.00 31.71 2.24
4953 5053 1.330234 TGCCATGCATGACACAAACT 58.670 45.000 28.31 0.00 31.71 2.66
4954 5054 2.151881 TTGCCATGCATGACACAAAC 57.848 45.000 28.31 8.36 38.76 2.93
4955 5055 3.404224 AATTGCCATGCATGACACAAA 57.596 38.095 28.31 8.33 38.76 2.83
4956 5056 4.532314 TTAATTGCCATGCATGACACAA 57.468 36.364 28.31 25.14 38.76 3.33
4957 5057 4.739587 ATTAATTGCCATGCATGACACA 57.260 36.364 28.31 18.81 38.76 3.72
4958 5058 5.693104 CCTTATTAATTGCCATGCATGACAC 59.307 40.000 28.31 16.49 38.76 3.67
4959 5059 5.739647 GCCTTATTAATTGCCATGCATGACA 60.740 40.000 28.31 20.53 38.76 3.58
4960 5060 4.687483 GCCTTATTAATTGCCATGCATGAC 59.313 41.667 28.31 17.77 38.76 3.06
4961 5061 4.344390 TGCCTTATTAATTGCCATGCATGA 59.656 37.500 28.31 8.76 38.76 3.07
4962 5062 4.633175 TGCCTTATTAATTGCCATGCATG 58.367 39.130 20.19 20.19 38.76 4.06
4963 5063 4.959560 TGCCTTATTAATTGCCATGCAT 57.040 36.364 0.00 0.00 38.76 3.96
4964 5064 4.750021 TTGCCTTATTAATTGCCATGCA 57.250 36.364 0.00 0.00 36.47 3.96
4965 5065 5.544650 AGATTGCCTTATTAATTGCCATGC 58.455 37.500 0.00 0.00 0.00 4.06
4966 5066 8.579006 TCTTAGATTGCCTTATTAATTGCCATG 58.421 33.333 0.00 0.00 0.00 3.66
4967 5067 8.710749 TCTTAGATTGCCTTATTAATTGCCAT 57.289 30.769 0.00 0.00 0.00 4.40
4968 5068 8.710749 ATCTTAGATTGCCTTATTAATTGCCA 57.289 30.769 0.00 0.00 0.00 4.92
4976 5076 9.746457 GGAGGAAATATCTTAGATTGCCTTATT 57.254 33.333 0.00 0.00 41.73 1.40
4977 5077 8.043710 CGGAGGAAATATCTTAGATTGCCTTAT 58.956 37.037 0.00 0.00 41.73 1.73
4978 5078 7.016268 ACGGAGGAAATATCTTAGATTGCCTTA 59.984 37.037 0.00 0.00 41.73 2.69
4979 5079 6.183361 ACGGAGGAAATATCTTAGATTGCCTT 60.183 38.462 0.00 0.00 41.73 4.35
4980 5080 5.308237 ACGGAGGAAATATCTTAGATTGCCT 59.692 40.000 0.00 0.00 43.99 4.75
4981 5081 5.552178 ACGGAGGAAATATCTTAGATTGCC 58.448 41.667 0.00 0.00 32.63 4.52
4982 5082 6.146347 GTGACGGAGGAAATATCTTAGATTGC 59.854 42.308 0.00 0.00 0.00 3.56
4983 5083 7.210174 TGTGACGGAGGAAATATCTTAGATTG 58.790 38.462 0.00 0.00 0.00 2.67
4984 5084 7.070074 ACTGTGACGGAGGAAATATCTTAGATT 59.930 37.037 0.00 0.00 0.00 2.40
4985 5085 6.551601 ACTGTGACGGAGGAAATATCTTAGAT 59.448 38.462 0.00 0.00 0.00 1.98
4986 5086 5.892119 ACTGTGACGGAGGAAATATCTTAGA 59.108 40.000 0.00 0.00 0.00 2.10
4987 5087 6.150396 ACTGTGACGGAGGAAATATCTTAG 57.850 41.667 0.00 0.00 0.00 2.18
4988 5088 6.540438 AACTGTGACGGAGGAAATATCTTA 57.460 37.500 0.00 0.00 0.00 2.10
4989 5089 5.422214 AACTGTGACGGAGGAAATATCTT 57.578 39.130 0.00 0.00 0.00 2.40
4990 5090 5.422214 AAACTGTGACGGAGGAAATATCT 57.578 39.130 0.00 0.00 0.00 1.98
4991 5091 6.570692 TCTAAACTGTGACGGAGGAAATATC 58.429 40.000 0.00 0.00 0.00 1.63
4992 5092 6.407074 CCTCTAAACTGTGACGGAGGAAATAT 60.407 42.308 0.00 0.00 41.83 1.28
4993 5093 5.105473 CCTCTAAACTGTGACGGAGGAAATA 60.105 44.000 0.00 0.00 41.83 1.40
4994 5094 4.322801 CCTCTAAACTGTGACGGAGGAAAT 60.323 45.833 0.00 0.00 41.83 2.17
4995 5095 3.006537 CCTCTAAACTGTGACGGAGGAAA 59.993 47.826 0.00 0.00 41.83 3.13
4996 5096 2.561419 CCTCTAAACTGTGACGGAGGAA 59.439 50.000 0.00 0.00 41.83 3.36
4997 5097 2.168496 CCTCTAAACTGTGACGGAGGA 58.832 52.381 0.00 0.00 41.83 3.71
4998 5098 1.404315 GCCTCTAAACTGTGACGGAGG 60.404 57.143 0.00 12.11 42.08 4.30
4999 5099 1.272490 TGCCTCTAAACTGTGACGGAG 59.728 52.381 0.00 0.00 0.00 4.63
5000 5100 1.000506 GTGCCTCTAAACTGTGACGGA 59.999 52.381 0.00 0.00 0.00 4.69
5001 5101 1.270094 TGTGCCTCTAAACTGTGACGG 60.270 52.381 0.00 0.00 0.00 4.79
5002 5102 2.061773 CTGTGCCTCTAAACTGTGACG 58.938 52.381 0.00 0.00 0.00 4.35
5003 5103 3.113260 ACTGTGCCTCTAAACTGTGAC 57.887 47.619 0.00 0.00 0.00 3.67
5004 5104 3.838244 AACTGTGCCTCTAAACTGTGA 57.162 42.857 0.00 0.00 0.00 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.