Multiple sequence alignment - TraesCS4A01G134300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G134300 chr4A 100.000 4117 0 0 1 4117 182220331 182216215 0.000000e+00 7603.0
1 TraesCS4A01G134300 chr4A 92.913 127 7 1 3281 3407 182216737 182216613 2.530000e-42 183.0
2 TraesCS4A01G134300 chr4A 92.913 127 7 1 3595 3719 182217051 182216925 2.530000e-42 183.0
3 TraesCS4A01G134300 chr4A 97.030 101 3 0 3184 3284 182216917 182216817 1.970000e-38 171.0
4 TraesCS4A01G134300 chr4A 97.030 101 3 0 3415 3515 182217148 182217048 1.970000e-38 171.0
5 TraesCS4A01G134300 chr4A 91.209 91 7 1 3512 3602 222555815 222555904 5.590000e-24 122.0
6 TraesCS4A01G134300 chr4D 95.206 3421 111 34 1 3396 300782345 300785737 0.000000e+00 5360.0
7 TraesCS4A01G134300 chr4D 86.636 434 25 6 3693 4097 300785752 300786181 2.260000e-122 449.0
8 TraesCS4A01G134300 chr4D 93.204 103 5 2 3415 3515 300785523 300785625 2.560000e-32 150.0
9 TraesCS4A01G134300 chr4B 94.928 2642 87 31 598 3213 373981348 373983968 0.000000e+00 4093.0
10 TraesCS4A01G134300 chr4B 93.548 589 21 9 1 580 373980779 373981359 0.000000e+00 861.0
11 TraesCS4A01G134300 chr4B 82.596 339 15 11 3761 4097 373992773 373993069 4.080000e-65 259.0
12 TraesCS4A01G134300 chr4B 91.525 118 10 0 3623 3740 373987689 373987806 3.290000e-36 163.0
13 TraesCS4A01G134300 chr4B 92.381 105 8 0 3303 3407 373987681 373987785 2.560000e-32 150.0
14 TraesCS4A01G134300 chr4B 95.506 89 2 2 3213 3299 373987499 373987587 1.540000e-29 141.0
15 TraesCS4A01G134300 chr4B 94.382 89 5 0 3509 3597 592354521 592354433 2.000000e-28 137.0
16 TraesCS4A01G134300 chr4B 91.667 96 8 0 3512 3607 30369978 30370073 2.580000e-27 134.0
17 TraesCS4A01G134300 chr4B 94.595 74 2 2 3444 3515 373987499 373987572 3.360000e-21 113.0
18 TraesCS4A01G134300 chr1A 94.737 95 4 1 3503 3596 281357502 281357596 3.320000e-31 147.0
19 TraesCS4A01G134300 chr1A 96.512 86 3 0 3512 3597 99920929 99921014 4.290000e-30 143.0
20 TraesCS4A01G134300 chr6A 96.471 85 3 0 3512 3596 579019574 579019658 1.540000e-29 141.0
21 TraesCS4A01G134300 chr3A 92.857 98 6 1 3500 3596 215966990 215966893 1.540000e-29 141.0
22 TraesCS4A01G134300 chr3A 100.000 28 0 0 3977 4004 452940802 452940775 7.000000e-03 52.8
23 TraesCS4A01G134300 chr2A 92.553 94 6 1 3512 3604 69386039 69385946 2.580000e-27 134.0
24 TraesCS4A01G134300 chr7B 91.667 96 7 1 3509 3603 100745927 100745832 9.290000e-27 132.0
25 TraesCS4A01G134300 chr3D 91.579 95 8 0 3509 3603 31774487 31774581 9.290000e-27 132.0
26 TraesCS4A01G134300 chr7A 88.785 107 9 3 3505 3608 80068826 80068932 1.200000e-25 128.0
27 TraesCS4A01G134300 chr3B 90.526 95 9 0 3509 3603 54302539 54302633 4.320000e-25 126.0
28 TraesCS4A01G134300 chr3B 93.750 80 5 0 3517 3596 52751850 52751929 2.010000e-23 121.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G134300 chr4A 182216215 182220331 4116 True 1662.200000 7603 95.977200 1 4117 5 chr4A.!!$R1 4116
1 TraesCS4A01G134300 chr4D 300782345 300786181 3836 False 1986.333333 5360 91.682000 1 4097 3 chr4D.!!$F1 4096
2 TraesCS4A01G134300 chr4B 373980779 373987806 7027 False 920.166667 4093 93.747167 1 3740 6 chr4B.!!$F3 3739

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
780 790 1.999346 CCTTCACCCGGGATTCCTT 59.001 57.895 32.02 0.0 0.0 3.36 F
1669 1679 0.108138 CTCCTTTCAGGTAGGCCGTG 60.108 60.000 0.00 0.0 40.5 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2699 2743 1.055040 GAGACATCCAGGGATCAGGG 58.945 60.0 0.00 0.0 31.62 4.45 R
3581 7248 0.033306 AAGAGTACTCCCTCCGTCCC 60.033 60.0 19.38 0.0 31.53 4.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
86 87 6.708949 GGTAATTGTGTCCTTCTGAGTGTAAA 59.291 38.462 0.00 0.00 0.00 2.01
88 89 7.823745 AATTGTGTCCTTCTGAGTGTAAATT 57.176 32.000 0.00 0.00 0.00 1.82
89 90 6.861065 TTGTGTCCTTCTGAGTGTAAATTC 57.139 37.500 0.00 0.00 0.00 2.17
91 92 4.389077 GTGTCCTTCTGAGTGTAAATTCGG 59.611 45.833 0.00 0.00 0.00 4.30
92 93 4.039973 TGTCCTTCTGAGTGTAAATTCGGT 59.960 41.667 0.00 0.00 0.00 4.69
93 94 4.389077 GTCCTTCTGAGTGTAAATTCGGTG 59.611 45.833 0.00 0.00 0.00 4.94
94 95 3.125316 CCTTCTGAGTGTAAATTCGGTGC 59.875 47.826 0.00 0.00 0.00 5.01
136 145 9.536510 AAAGTATGGCTTTGTAGGGTTAATTTA 57.463 29.630 0.00 0.00 45.00 1.40
208 217 5.508994 CCAATAAGTTTGCTTCCCGTTCTTT 60.509 40.000 0.00 0.00 36.22 2.52
272 281 6.442112 GCAGATAGGAATGCCAATTTTAGTC 58.558 40.000 0.00 0.00 36.41 2.59
340 349 5.163703 CGTTTCATCAATCGGGGTTATTTCA 60.164 40.000 0.00 0.00 0.00 2.69
469 478 8.347035 AGCAAATTACTTTTAGAACACGCTTTA 58.653 29.630 0.00 0.00 0.00 1.85
495 505 5.220381 TGTCTTTACGTTTAGTCTCTGCTG 58.780 41.667 0.00 0.00 0.00 4.41
766 776 2.361737 GCTTCCCACCCTGCCTTC 60.362 66.667 0.00 0.00 0.00 3.46
767 777 3.170362 CTTCCCACCCTGCCTTCA 58.830 61.111 0.00 0.00 0.00 3.02
780 790 1.999346 CCTTCACCCGGGATTCCTT 59.001 57.895 32.02 0.00 0.00 3.36
1515 1525 5.930837 AAGTCTATCAGGTGAGAAGGAAG 57.069 43.478 0.00 0.00 0.00 3.46
1645 1655 1.300388 CCTTTTGTGGTGCAGCTGC 60.300 57.895 31.89 31.89 42.50 5.25
1669 1679 0.108138 CTCCTTTCAGGTAGGCCGTG 60.108 60.000 0.00 0.00 40.50 4.94
1670 1680 1.745489 CCTTTCAGGTAGGCCGTGC 60.745 63.158 0.00 0.00 40.50 5.34
1782 1796 6.825213 TGCAGACTAAGTACCGACTTTATCTA 59.175 38.462 0.00 0.00 43.70 1.98
1806 1820 1.931635 TGGACTTTGTAAATGGGGGC 58.068 50.000 0.00 0.00 0.00 5.80
1918 1932 8.500773 TGACAACCTTTTTATTAAGCTTCTACG 58.499 33.333 0.00 0.00 0.00 3.51
1940 1954 0.909610 TGTGGTAGGGAGGAGCTTGG 60.910 60.000 0.00 0.00 0.00 3.61
1941 1955 0.617820 GTGGTAGGGAGGAGCTTGGA 60.618 60.000 0.00 0.00 0.00 3.53
2062 2076 3.152341 CATGGCCATGTAAGGATCCTTC 58.848 50.000 33.68 20.63 37.47 3.46
2069 2094 5.645497 GCCATGTAAGGATCCTTCATATGTC 59.355 44.000 30.35 17.78 37.47 3.06
2078 2103 7.637511 AGGATCCTTCATATGTCACTTTTTCT 58.362 34.615 9.02 0.00 0.00 2.52
2083 2108 8.593679 TCCTTCATATGTCACTTTTTCTGTCTA 58.406 33.333 1.90 0.00 0.00 2.59
2084 2109 9.388506 CCTTCATATGTCACTTTTTCTGTCTAT 57.611 33.333 1.90 0.00 0.00 1.98
2121 2146 3.146847 GAGGGGAAATTTCTTGACGTGT 58.853 45.455 17.42 0.00 0.00 4.49
2186 2211 5.413309 AGGAGTTTGATGAGAACACTAGG 57.587 43.478 0.00 0.00 0.00 3.02
2255 2280 3.114606 TCAGGGCAGAGGTCATGATAAA 58.885 45.455 0.00 0.00 34.01 1.40
2312 2337 1.544246 GAAATGCTTACGGGCAAGGTT 59.456 47.619 4.29 0.64 45.68 3.50
2313 2338 0.887933 AATGCTTACGGGCAAGGTTG 59.112 50.000 4.29 0.00 45.68 3.77
2342 2367 6.891306 TTGAGGGGAAATCTTCTGATTAGA 57.109 37.500 0.00 0.00 41.62 2.10
2394 2419 6.919662 CGCCTGATATATTTTTCTTTGCACAT 59.080 34.615 0.00 0.00 0.00 3.21
2459 2484 3.009916 ACAGGGACAAGATTCAGCAGAAT 59.990 43.478 3.70 3.70 46.85 2.40
2486 2511 2.977772 AGGAGAAGATGAAGCTTCCG 57.022 50.000 23.42 0.00 44.14 4.30
2537 2562 2.029918 GCTGAAAGGGGTAAGTTTGCTG 60.030 50.000 0.00 0.00 0.00 4.41
2559 2584 0.749818 TTCACCTTGACCTTGCGCAA 60.750 50.000 23.48 23.48 0.00 4.85
2560 2585 0.537143 TCACCTTGACCTTGCGCAAT 60.537 50.000 25.26 10.11 0.00 3.56
2563 2588 1.298157 CCTTGACCTTGCGCAATCGA 61.298 55.000 25.26 17.54 38.10 3.59
2574 2615 0.238289 CGCAATCGACCTTTGCTTGT 59.762 50.000 17.46 0.00 45.67 3.16
2604 2645 3.442273 GTCAACCCAGTTTGAGTTTGTGA 59.558 43.478 0.00 0.00 36.15 3.58
2605 2646 4.097892 GTCAACCCAGTTTGAGTTTGTGAT 59.902 41.667 0.00 0.00 36.15 3.06
2606 2647 4.338118 TCAACCCAGTTTGAGTTTGTGATC 59.662 41.667 0.00 0.00 31.68 2.92
2607 2648 3.897239 ACCCAGTTTGAGTTTGTGATCA 58.103 40.909 0.00 0.00 0.00 2.92
2608 2649 4.277476 ACCCAGTTTGAGTTTGTGATCAA 58.723 39.130 0.00 0.00 33.73 2.57
2609 2650 4.709397 ACCCAGTTTGAGTTTGTGATCAAA 59.291 37.500 0.00 0.00 41.76 2.69
2677 2719 7.444183 TGCCTTGGTCCTAGATAAATAAAATCG 59.556 37.037 1.39 0.00 0.00 3.34
2699 2743 4.669197 CGCACCTTATTGCTTGTAGTGAAC 60.669 45.833 0.00 0.00 40.62 3.18
2729 2773 2.692557 CTGGATGTCTCTTGTCGGAGAT 59.307 50.000 0.00 0.00 43.15 2.75
2764 2808 7.084486 GCCTTGTTAGTTGGAAGTTAAATCTG 58.916 38.462 0.00 0.00 0.00 2.90
2769 2813 5.904362 AGTTGGAAGTTAAATCTGGATGC 57.096 39.130 0.00 0.00 0.00 3.91
2785 2829 2.159057 GGATGCCTTGGTGCTAATTTGG 60.159 50.000 0.00 0.00 0.00 3.28
2803 2847 3.520290 TGGCCTTACTATCTCAACACG 57.480 47.619 3.32 0.00 0.00 4.49
2804 2848 2.167693 TGGCCTTACTATCTCAACACGG 59.832 50.000 3.32 0.00 0.00 4.94
3008 3052 1.878522 GTGCTGGACGAGTATGCCG 60.879 63.158 0.00 0.00 0.00 5.69
3020 3064 1.685765 TATGCCGGTGCTGGACTCT 60.686 57.895 1.90 0.00 38.71 3.24
3174 3218 7.124901 TCCAGTATCTTATCTTTGCTCAAGACT 59.875 37.037 1.49 0.00 44.70 3.24
3266 6841 2.104451 TGGCAATGACTTTGTGGCAATT 59.896 40.909 0.00 0.00 43.91 2.32
3270 6845 4.050553 CAATGACTTTGTGGCAATTCGTT 58.949 39.130 0.00 0.00 37.17 3.85
3272 6847 3.443037 TGACTTTGTGGCAATTCGTTTG 58.557 40.909 0.00 0.00 38.43 2.93
3273 6848 3.119316 TGACTTTGTGGCAATTCGTTTGT 60.119 39.130 0.00 0.00 37.65 2.83
3276 6851 4.328712 ACTTTGTGGCAATTCGTTTGTTTC 59.671 37.500 0.00 0.00 37.65 2.78
3277 6852 3.791973 TGTGGCAATTCGTTTGTTTCT 57.208 38.095 0.00 0.00 37.65 2.52
3346 7013 2.206815 TGTGCATGAACACTGTTTGC 57.793 45.000 1.03 10.47 41.30 3.68
3348 7015 2.948315 TGTGCATGAACACTGTTTGCTA 59.052 40.909 16.09 6.24 41.30 3.49
3388 7055 4.322567 GCAGAAGTTCATGGAAGAAGAGT 58.677 43.478 5.50 0.00 0.00 3.24
3389 7056 4.153835 GCAGAAGTTCATGGAAGAAGAGTG 59.846 45.833 5.50 0.00 0.00 3.51
3396 7063 0.397941 TGGAAGAAGAGTGGTGGCTG 59.602 55.000 0.00 0.00 0.00 4.85
3399 7066 2.147150 GAAGAAGAGTGGTGGCTGTTC 58.853 52.381 0.00 0.00 38.55 3.18
3401 7068 1.071385 AGAAGAGTGGTGGCTGTTCTG 59.929 52.381 4.97 0.00 44.20 3.02
3402 7069 0.536006 AAGAGTGGTGGCTGTTCTGC 60.536 55.000 0.00 0.00 0.00 4.26
3403 7070 1.227943 GAGTGGTGGCTGTTCTGCA 60.228 57.895 4.30 0.00 34.04 4.41
3404 7071 0.819259 GAGTGGTGGCTGTTCTGCAA 60.819 55.000 4.30 0.00 34.04 4.08
3405 7072 1.103398 AGTGGTGGCTGTTCTGCAAC 61.103 55.000 4.30 2.84 36.21 4.17
3408 7075 2.594303 TGGCTGTTCTGCAACCGG 60.594 61.111 0.00 0.00 36.14 5.28
3410 7077 1.675641 GGCTGTTCTGCAACCGGAT 60.676 57.895 9.46 0.00 34.04 4.18
3411 7078 1.503542 GCTGTTCTGCAACCGGATG 59.496 57.895 9.46 8.33 0.00 3.51
3412 7079 1.237285 GCTGTTCTGCAACCGGATGT 61.237 55.000 9.46 0.00 0.00 3.06
3413 7080 1.943968 GCTGTTCTGCAACCGGATGTA 60.944 52.381 9.46 5.05 0.00 2.29
3414 7081 2.422597 CTGTTCTGCAACCGGATGTAA 58.577 47.619 9.46 0.00 0.00 2.41
3415 7082 2.811431 CTGTTCTGCAACCGGATGTAAA 59.189 45.455 9.46 0.75 0.00 2.01
3416 7083 2.550606 TGTTCTGCAACCGGATGTAAAC 59.449 45.455 9.46 13.56 0.00 2.01
3417 7084 1.816074 TCTGCAACCGGATGTAAACC 58.184 50.000 9.46 0.00 0.00 3.27
3418 7085 1.349688 TCTGCAACCGGATGTAAACCT 59.650 47.619 9.46 0.00 0.00 3.50
3419 7086 1.468520 CTGCAACCGGATGTAAACCTG 59.531 52.381 9.46 0.00 0.00 4.00
3420 7087 0.170339 GCAACCGGATGTAAACCTGC 59.830 55.000 9.46 0.00 0.00 4.85
3421 7088 1.821216 CAACCGGATGTAAACCTGCT 58.179 50.000 9.46 0.00 0.00 4.24
3422 7089 1.468520 CAACCGGATGTAAACCTGCTG 59.531 52.381 9.46 0.00 0.00 4.41
3423 7090 0.690762 ACCGGATGTAAACCTGCTGT 59.309 50.000 9.46 0.00 0.00 4.40
3424 7091 1.073284 ACCGGATGTAAACCTGCTGTT 59.927 47.619 9.46 0.00 39.43 3.16
3425 7092 1.468520 CCGGATGTAAACCTGCTGTTG 59.531 52.381 0.00 0.00 37.23 3.33
3426 7093 2.151202 CGGATGTAAACCTGCTGTTGT 58.849 47.619 0.00 0.00 37.23 3.32
3427 7094 2.095768 CGGATGTAAACCTGCTGTTGTG 60.096 50.000 0.00 0.00 37.23 3.33
3428 7095 2.351738 GGATGTAAACCTGCTGTTGTGC 60.352 50.000 0.00 0.00 37.23 4.57
3429 7096 2.051334 TGTAAACCTGCTGTTGTGCT 57.949 45.000 0.00 0.00 37.23 4.40
3430 7097 2.374184 TGTAAACCTGCTGTTGTGCTT 58.626 42.857 0.00 0.00 37.23 3.91
3431 7098 2.098934 TGTAAACCTGCTGTTGTGCTTG 59.901 45.455 0.00 0.00 37.23 4.01
3432 7099 1.185315 AAACCTGCTGTTGTGCTTGT 58.815 45.000 0.00 0.00 37.23 3.16
3433 7100 1.185315 AACCTGCTGTTGTGCTTGTT 58.815 45.000 0.00 0.00 35.31 2.83
3434 7101 1.185315 ACCTGCTGTTGTGCTTGTTT 58.815 45.000 0.00 0.00 0.00 2.83
3435 7102 1.550072 ACCTGCTGTTGTGCTTGTTTT 59.450 42.857 0.00 0.00 0.00 2.43
3436 7103 2.757868 ACCTGCTGTTGTGCTTGTTTTA 59.242 40.909 0.00 0.00 0.00 1.52
3437 7104 3.384467 ACCTGCTGTTGTGCTTGTTTTAT 59.616 39.130 0.00 0.00 0.00 1.40
3438 7105 4.582656 ACCTGCTGTTGTGCTTGTTTTATA 59.417 37.500 0.00 0.00 0.00 0.98
3439 7106 4.917415 CCTGCTGTTGTGCTTGTTTTATAC 59.083 41.667 0.00 0.00 0.00 1.47
3440 7107 5.278463 CCTGCTGTTGTGCTTGTTTTATACT 60.278 40.000 0.00 0.00 0.00 2.12
3441 7108 6.142818 TGCTGTTGTGCTTGTTTTATACTT 57.857 33.333 0.00 0.00 0.00 2.24
3442 7109 6.205784 TGCTGTTGTGCTTGTTTTATACTTC 58.794 36.000 0.00 0.00 0.00 3.01
3443 7110 6.183360 TGCTGTTGTGCTTGTTTTATACTTCA 60.183 34.615 0.00 0.00 0.00 3.02
3444 7111 6.863126 GCTGTTGTGCTTGTTTTATACTTCAT 59.137 34.615 0.00 0.00 0.00 2.57
3445 7112 7.382218 GCTGTTGTGCTTGTTTTATACTTCATT 59.618 33.333 0.00 0.00 0.00 2.57
3446 7113 9.248291 CTGTTGTGCTTGTTTTATACTTCATTT 57.752 29.630 0.00 0.00 0.00 2.32
3447 7114 9.029243 TGTTGTGCTTGTTTTATACTTCATTTG 57.971 29.630 0.00 0.00 0.00 2.32
3448 7115 9.030301 GTTGTGCTTGTTTTATACTTCATTTGT 57.970 29.630 0.00 0.00 0.00 2.83
3449 7116 8.795786 TGTGCTTGTTTTATACTTCATTTGTC 57.204 30.769 0.00 0.00 0.00 3.18
3450 7117 8.629158 TGTGCTTGTTTTATACTTCATTTGTCT 58.371 29.630 0.00 0.00 0.00 3.41
3458 7125 9.967451 TTTTATACTTCATTTGTCTATCACCCA 57.033 29.630 0.00 0.00 0.00 4.51
3459 7126 9.967451 TTTATACTTCATTTGTCTATCACCCAA 57.033 29.630 0.00 0.00 0.00 4.12
3460 7127 9.613428 TTATACTTCATTTGTCTATCACCCAAG 57.387 33.333 0.00 0.00 0.00 3.61
3461 7128 6.126863 ACTTCATTTGTCTATCACCCAAGA 57.873 37.500 0.00 0.00 0.00 3.02
3462 7129 6.176183 ACTTCATTTGTCTATCACCCAAGAG 58.824 40.000 0.00 0.00 0.00 2.85
3463 7130 5.102953 TCATTTGTCTATCACCCAAGAGG 57.897 43.478 0.00 0.00 43.78 3.69
3474 7141 2.356667 CAAGAGGGGGCTTGGGAC 59.643 66.667 0.00 0.00 41.15 4.46
3475 7142 2.211279 AAGAGGGGGCTTGGGACT 59.789 61.111 0.00 0.00 0.00 3.85
3476 7143 1.466186 AAGAGGGGGCTTGGGACTT 60.466 57.895 0.00 0.00 0.00 3.01
3477 7144 1.793820 AAGAGGGGGCTTGGGACTTG 61.794 60.000 0.00 0.00 0.00 3.16
3478 7145 3.268032 AGGGGGCTTGGGACTTGG 61.268 66.667 0.00 0.00 0.00 3.61
3480 7147 4.299796 GGGGCTTGGGACTTGGCA 62.300 66.667 0.00 0.00 0.00 4.92
3481 7148 2.203625 GGGCTTGGGACTTGGCAA 60.204 61.111 0.00 0.00 0.00 4.52
3482 7149 1.610379 GGGCTTGGGACTTGGCAAT 60.610 57.895 0.00 0.00 0.00 3.56
3483 7150 1.593265 GGCTTGGGACTTGGCAATG 59.407 57.895 0.00 0.00 0.00 2.82
3484 7151 0.899717 GGCTTGGGACTTGGCAATGA 60.900 55.000 0.00 0.00 0.00 2.57
3485 7152 0.244721 GCTTGGGACTTGGCAATGAC 59.755 55.000 0.00 0.00 0.00 3.06
3486 7153 1.915141 CTTGGGACTTGGCAATGACT 58.085 50.000 0.00 0.00 0.00 3.41
3487 7154 2.242043 CTTGGGACTTGGCAATGACTT 58.758 47.619 0.00 0.00 0.00 3.01
3488 7155 2.380064 TGGGACTTGGCAATGACTTT 57.620 45.000 0.00 0.00 0.00 2.66
3489 7156 1.962807 TGGGACTTGGCAATGACTTTG 59.037 47.619 0.00 0.00 38.43 2.77
3490 7157 1.963515 GGGACTTGGCAATGACTTTGT 59.036 47.619 0.00 0.00 37.65 2.83
3491 7158 2.288395 GGGACTTGGCAATGACTTTGTG 60.288 50.000 0.00 0.00 37.65 3.33
3492 7159 2.288395 GGACTTGGCAATGACTTTGTGG 60.288 50.000 0.00 0.00 37.65 4.17
3493 7160 1.069049 ACTTGGCAATGACTTTGTGGC 59.931 47.619 0.00 0.00 37.65 5.01
3494 7161 1.068895 CTTGGCAATGACTTTGTGGCA 59.931 47.619 0.00 0.00 45.02 4.92
3495 7162 1.117994 TGGCAATGACTTTGTGGCAA 58.882 45.000 0.00 0.00 43.91 4.52
3496 7163 1.693062 TGGCAATGACTTTGTGGCAAT 59.307 42.857 0.00 0.00 43.91 3.56
3497 7164 2.288948 TGGCAATGACTTTGTGGCAATC 60.289 45.455 0.00 0.00 43.91 2.67
3498 7165 2.028748 GGCAATGACTTTGTGGCAATCT 60.029 45.455 0.00 0.00 37.17 2.40
3499 7166 2.991190 GCAATGACTTTGTGGCAATCTG 59.009 45.455 0.00 0.00 37.17 2.90
3500 7167 3.553508 GCAATGACTTTGTGGCAATCTGT 60.554 43.478 0.00 0.00 37.17 3.41
3501 7168 4.624015 CAATGACTTTGTGGCAATCTGTT 58.376 39.130 0.00 0.00 37.17 3.16
3502 7169 4.942761 ATGACTTTGTGGCAATCTGTTT 57.057 36.364 0.00 0.00 37.17 2.83
3503 7170 4.044336 TGACTTTGTGGCAATCTGTTTG 57.956 40.909 0.00 0.00 38.43 2.93
3504 7171 3.446873 TGACTTTGTGGCAATCTGTTTGT 59.553 39.130 0.00 0.00 37.65 2.83
3505 7172 4.081752 TGACTTTGTGGCAATCTGTTTGTT 60.082 37.500 0.00 0.00 37.65 2.83
3506 7173 4.831107 ACTTTGTGGCAATCTGTTTGTTT 58.169 34.783 0.00 0.00 37.65 2.83
3507 7174 4.869861 ACTTTGTGGCAATCTGTTTGTTTC 59.130 37.500 0.00 0.00 37.65 2.78
3508 7175 4.734398 TTGTGGCAATCTGTTTGTTTCT 57.266 36.364 0.00 0.00 37.65 2.52
3509 7176 4.734398 TGTGGCAATCTGTTTGTTTCTT 57.266 36.364 0.00 0.00 37.65 2.52
3510 7177 5.083533 TGTGGCAATCTGTTTGTTTCTTT 57.916 34.783 0.00 0.00 37.65 2.52
3511 7178 5.486526 TGTGGCAATCTGTTTGTTTCTTTT 58.513 33.333 0.00 0.00 37.65 2.27
3512 7179 6.634805 TGTGGCAATCTGTTTGTTTCTTTTA 58.365 32.000 0.00 0.00 37.65 1.52
3513 7180 6.533367 TGTGGCAATCTGTTTGTTTCTTTTAC 59.467 34.615 0.00 0.00 37.65 2.01
3514 7181 6.756542 GTGGCAATCTGTTTGTTTCTTTTACT 59.243 34.615 0.00 0.00 37.65 2.24
3515 7182 7.277760 GTGGCAATCTGTTTGTTTCTTTTACTT 59.722 33.333 0.00 0.00 37.65 2.24
3516 7183 7.491048 TGGCAATCTGTTTGTTTCTTTTACTTC 59.509 33.333 0.00 0.00 37.65 3.01
3517 7184 7.042725 GGCAATCTGTTTGTTTCTTTTACTTCC 60.043 37.037 0.92 0.00 37.65 3.46
3518 7185 7.706607 GCAATCTGTTTGTTTCTTTTACTTCCT 59.293 33.333 0.92 0.00 37.65 3.36
3519 7186 9.237846 CAATCTGTTTGTTTCTTTTACTTCCTC 57.762 33.333 0.00 0.00 0.00 3.71
3520 7187 8.753497 ATCTGTTTGTTTCTTTTACTTCCTCT 57.247 30.769 0.00 0.00 0.00 3.69
3521 7188 7.985476 TCTGTTTGTTTCTTTTACTTCCTCTG 58.015 34.615 0.00 0.00 0.00 3.35
3522 7189 7.610305 TCTGTTTGTTTCTTTTACTTCCTCTGT 59.390 33.333 0.00 0.00 0.00 3.41
3523 7190 7.758495 TGTTTGTTTCTTTTACTTCCTCTGTC 58.242 34.615 0.00 0.00 0.00 3.51
3524 7191 6.937436 TTGTTTCTTTTACTTCCTCTGTCC 57.063 37.500 0.00 0.00 0.00 4.02
3525 7192 6.248569 TGTTTCTTTTACTTCCTCTGTCCT 57.751 37.500 0.00 0.00 0.00 3.85
3526 7193 7.369551 TGTTTCTTTTACTTCCTCTGTCCTA 57.630 36.000 0.00 0.00 0.00 2.94
3527 7194 7.442656 TGTTTCTTTTACTTCCTCTGTCCTAG 58.557 38.462 0.00 0.00 0.00 3.02
3528 7195 7.289317 TGTTTCTTTTACTTCCTCTGTCCTAGA 59.711 37.037 0.00 0.00 0.00 2.43
3529 7196 7.850935 TTCTTTTACTTCCTCTGTCCTAGAA 57.149 36.000 0.00 0.00 34.32 2.10
3530 7197 8.437274 TTCTTTTACTTCCTCTGTCCTAGAAT 57.563 34.615 0.00 0.00 34.32 2.40
3531 7198 9.543231 TTCTTTTACTTCCTCTGTCCTAGAATA 57.457 33.333 0.00 0.00 34.32 1.75
3532 7199 9.716556 TCTTTTACTTCCTCTGTCCTAGAATAT 57.283 33.333 0.00 0.00 34.32 1.28
3538 7205 9.138596 ACTTCCTCTGTCCTAGAATATAAGAAC 57.861 37.037 0.00 0.00 34.32 3.01
3539 7206 7.747155 TCCTCTGTCCTAGAATATAAGAACG 57.253 40.000 0.00 0.00 34.32 3.95
3540 7207 7.288560 TCCTCTGTCCTAGAATATAAGAACGT 58.711 38.462 0.00 0.00 34.32 3.99
3541 7208 7.778853 TCCTCTGTCCTAGAATATAAGAACGTT 59.221 37.037 0.00 0.00 34.32 3.99
3542 7209 8.077386 CCTCTGTCCTAGAATATAAGAACGTTC 58.923 40.741 20.71 20.71 34.32 3.95
3543 7210 8.749026 TCTGTCCTAGAATATAAGAACGTTCT 57.251 34.615 24.93 24.93 33.56 3.01
3544 7211 9.186837 TCTGTCCTAGAATATAAGAACGTTCTT 57.813 33.333 37.47 37.47 40.51 2.52
3545 7212 9.239002 CTGTCCTAGAATATAAGAACGTTCTTG 57.761 37.037 40.39 25.93 46.34 3.02
3546 7213 8.963725 TGTCCTAGAATATAAGAACGTTCTTGA 58.036 33.333 40.39 31.02 46.34 3.02
3547 7214 9.968870 GTCCTAGAATATAAGAACGTTCTTGAT 57.031 33.333 40.39 31.60 46.34 2.57
3557 7224 9.900710 ATAAGAACGTTCTTGATACTATGCTAG 57.099 33.333 40.39 0.00 46.34 3.42
3558 7225 7.336161 AGAACGTTCTTGATACTATGCTAGT 57.664 36.000 24.93 0.00 37.21 2.57
3559 7226 7.197017 AGAACGTTCTTGATACTATGCTAGTG 58.803 38.462 24.93 0.00 35.16 2.74
3560 7227 6.452494 ACGTTCTTGATACTATGCTAGTGT 57.548 37.500 6.21 0.61 39.81 3.55
3561 7228 6.864342 ACGTTCTTGATACTATGCTAGTGTT 58.136 36.000 6.21 0.00 39.81 3.32
3562 7229 7.993101 ACGTTCTTGATACTATGCTAGTGTTA 58.007 34.615 6.21 0.00 39.81 2.41
3563 7230 8.129840 ACGTTCTTGATACTATGCTAGTGTTAG 58.870 37.037 6.21 0.00 39.81 2.34
3564 7231 8.343366 CGTTCTTGATACTATGCTAGTGTTAGA 58.657 37.037 6.21 4.88 39.81 2.10
3568 7235 8.851960 TTGATACTATGCTAGTGTTAGAAACG 57.148 34.615 6.21 0.00 39.81 3.60
3569 7236 7.993101 TGATACTATGCTAGTGTTAGAAACGT 58.007 34.615 6.21 0.00 39.81 3.99
3570 7237 8.464404 TGATACTATGCTAGTGTTAGAAACGTT 58.536 33.333 0.00 0.00 39.81 3.99
3571 7238 8.853469 ATACTATGCTAGTGTTAGAAACGTTC 57.147 34.615 0.00 0.00 39.81 3.95
3572 7239 6.921914 ACTATGCTAGTGTTAGAAACGTTCT 58.078 36.000 0.00 3.32 39.60 3.01
3573 7240 7.376615 ACTATGCTAGTGTTAGAAACGTTCTT 58.623 34.615 0.00 0.00 38.20 2.52
3574 7241 8.517878 ACTATGCTAGTGTTAGAAACGTTCTTA 58.482 33.333 0.00 0.00 38.20 2.10
3575 7242 9.517609 CTATGCTAGTGTTAGAAACGTTCTTAT 57.482 33.333 0.00 0.00 41.14 1.73
3578 7245 9.865321 TGCTAGTGTTAGAAACGTTCTTATATT 57.135 29.630 0.00 0.00 41.14 1.28
3583 7250 9.550811 GTGTTAGAAACGTTCTTATATTTTGGG 57.449 33.333 0.00 0.00 41.14 4.12
3584 7251 9.504708 TGTTAGAAACGTTCTTATATTTTGGGA 57.495 29.630 0.00 0.00 41.14 4.37
3585 7252 9.764870 GTTAGAAACGTTCTTATATTTTGGGAC 57.235 33.333 0.00 0.00 41.14 4.46
3586 7253 7.068692 AGAAACGTTCTTATATTTTGGGACG 57.931 36.000 0.00 0.00 36.36 4.79
3587 7254 5.806366 AACGTTCTTATATTTTGGGACGG 57.194 39.130 0.00 0.00 0.00 4.79
3588 7255 5.088680 ACGTTCTTATATTTTGGGACGGA 57.911 39.130 0.00 0.00 0.00 4.69
3589 7256 5.114081 ACGTTCTTATATTTTGGGACGGAG 58.886 41.667 0.00 0.00 0.00 4.63
3590 7257 4.510340 CGTTCTTATATTTTGGGACGGAGG 59.490 45.833 0.00 0.00 0.00 4.30
3591 7258 4.699925 TCTTATATTTTGGGACGGAGGG 57.300 45.455 0.00 0.00 0.00 4.30
3592 7259 4.300345 TCTTATATTTTGGGACGGAGGGA 58.700 43.478 0.00 0.00 0.00 4.20
3593 7260 4.347000 TCTTATATTTTGGGACGGAGGGAG 59.653 45.833 0.00 0.00 0.00 4.30
3594 7261 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
3595 7262 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
3596 7263 0.978907 TTTTGGGACGGAGGGAGTAC 59.021 55.000 0.00 0.00 0.00 2.73
3597 7264 0.115745 TTTGGGACGGAGGGAGTACT 59.884 55.000 0.00 0.00 0.00 2.73
3598 7265 0.324091 TTGGGACGGAGGGAGTACTC 60.324 60.000 14.87 14.87 36.76 2.59
3599 7266 1.212934 TGGGACGGAGGGAGTACTCT 61.213 60.000 21.88 3.41 37.63 3.24
3600 7267 0.033306 GGGACGGAGGGAGTACTCTT 60.033 60.000 21.88 11.06 37.63 2.85
3601 7268 1.619160 GGGACGGAGGGAGTACTCTTT 60.619 57.143 21.88 10.70 37.63 2.52
3602 7269 2.357569 GGGACGGAGGGAGTACTCTTTA 60.358 54.545 21.88 0.00 37.63 1.85
3603 7270 2.950975 GGACGGAGGGAGTACTCTTTAG 59.049 54.545 21.88 12.23 37.63 1.85
3604 7271 3.619419 GACGGAGGGAGTACTCTTTAGT 58.381 50.000 21.88 14.98 39.91 2.24
3605 7272 4.015764 GACGGAGGGAGTACTCTTTAGTT 58.984 47.826 21.88 3.80 37.15 2.24
3606 7273 3.762823 ACGGAGGGAGTACTCTTTAGTTG 59.237 47.826 21.88 9.12 37.15 3.16
3607 7274 3.429135 CGGAGGGAGTACTCTTTAGTTGC 60.429 52.174 21.88 3.09 37.15 4.17
3608 7275 3.514309 GGAGGGAGTACTCTTTAGTTGCA 59.486 47.826 21.88 0.00 37.15 4.08
3609 7276 4.162509 GGAGGGAGTACTCTTTAGTTGCAT 59.837 45.833 21.88 0.66 37.15 3.96
3610 7277 5.346181 AGGGAGTACTCTTTAGTTGCATC 57.654 43.478 21.88 1.16 37.15 3.91
3611 7278 5.026790 AGGGAGTACTCTTTAGTTGCATCT 58.973 41.667 21.88 2.28 37.15 2.90
3612 7279 5.485708 AGGGAGTACTCTTTAGTTGCATCTT 59.514 40.000 21.88 0.00 37.15 2.40
3613 7280 6.668283 AGGGAGTACTCTTTAGTTGCATCTTA 59.332 38.462 21.88 0.00 37.15 2.10
3614 7281 7.180408 AGGGAGTACTCTTTAGTTGCATCTTAA 59.820 37.037 21.88 0.00 37.15 1.85
3615 7282 7.988028 GGGAGTACTCTTTAGTTGCATCTTAAT 59.012 37.037 21.88 0.00 37.15 1.40
3616 7283 9.384764 GGAGTACTCTTTAGTTGCATCTTAATT 57.615 33.333 21.88 0.00 37.15 1.40
3642 7309 8.489990 ACTAAATCAATCTCACTGAGAATGTG 57.510 34.615 19.35 14.36 42.27 3.21
3643 7310 5.814764 AATCAATCTCACTGAGAATGTGC 57.185 39.130 19.35 0.00 42.27 4.57
3644 7311 4.276058 TCAATCTCACTGAGAATGTGCA 57.724 40.909 19.35 2.88 42.27 4.57
3645 7312 4.840271 TCAATCTCACTGAGAATGTGCAT 58.160 39.130 19.35 0.00 42.27 3.96
3646 7313 4.634443 TCAATCTCACTGAGAATGTGCATG 59.366 41.667 19.35 8.62 42.27 4.06
3647 7314 3.967332 TCTCACTGAGAATGTGCATGA 57.033 42.857 6.26 0.00 35.59 3.07
3648 7315 4.276058 TCTCACTGAGAATGTGCATGAA 57.724 40.909 6.26 0.00 35.59 2.57
3649 7316 3.999001 TCTCACTGAGAATGTGCATGAAC 59.001 43.478 6.26 0.00 35.59 3.18
3650 7317 3.742385 TCACTGAGAATGTGCATGAACA 58.258 40.909 9.52 9.52 35.58 3.18
3651 7318 3.499537 TCACTGAGAATGTGCATGAACAC 59.500 43.478 9.24 2.25 41.10 3.32
3652 7319 3.501062 CACTGAGAATGTGCATGAACACT 59.499 43.478 9.24 0.00 41.30 3.55
3653 7320 3.501062 ACTGAGAATGTGCATGAACACTG 59.499 43.478 9.24 3.16 41.30 3.66
3654 7321 3.479489 TGAGAATGTGCATGAACACTGT 58.521 40.909 9.24 0.00 41.30 3.55
3655 7322 3.884693 TGAGAATGTGCATGAACACTGTT 59.115 39.130 9.24 0.00 41.30 3.16
3656 7323 4.338964 TGAGAATGTGCATGAACACTGTTT 59.661 37.500 9.24 0.00 41.30 2.83
3657 7324 4.613944 AGAATGTGCATGAACACTGTTTG 58.386 39.130 9.24 0.00 41.30 2.93
3658 7325 4.098349 AGAATGTGCATGAACACTGTTTGT 59.902 37.500 9.24 0.00 41.30 2.83
3673 7340 8.687824 ACACTGTTTGTTATTCAAGTTTTCTG 57.312 30.769 0.00 0.00 33.09 3.02
3674 7341 7.275560 ACACTGTTTGTTATTCAAGTTTTCTGC 59.724 33.333 0.00 0.00 33.09 4.26
3675 7342 6.756542 ACTGTTTGTTATTCAAGTTTTCTGCC 59.243 34.615 0.00 0.00 37.35 4.85
3676 7343 6.872920 TGTTTGTTATTCAAGTTTTCTGCCT 58.127 32.000 0.00 0.00 37.35 4.75
3677 7344 6.756074 TGTTTGTTATTCAAGTTTTCTGCCTG 59.244 34.615 0.00 0.00 37.35 4.85
3678 7345 5.452078 TGTTATTCAAGTTTTCTGCCTGG 57.548 39.130 0.00 0.00 0.00 4.45
3679 7346 4.237724 GTTATTCAAGTTTTCTGCCTGGC 58.762 43.478 12.87 12.87 0.00 4.85
3680 7347 1.774110 TTCAAGTTTTCTGCCTGGCA 58.226 45.000 21.96 21.96 36.92 4.92
3690 7357 2.951269 TGCCTGGCAGAAGTTCATG 58.049 52.632 19.30 0.00 33.32 3.07
3691 7358 0.609957 TGCCTGGCAGAAGTTCATGG 60.610 55.000 19.30 0.00 33.32 3.66
3696 7363 3.008330 CTGGCAGAAGTTCATGGAAGAG 58.992 50.000 9.42 0.00 0.00 2.85
3701 7368 2.093764 AGAAGTTCATGGAAGAGGAGCG 60.094 50.000 5.50 0.00 0.00 5.03
3723 7390 1.423541 TGGCTGTTCTACAACCATGGT 59.576 47.619 13.00 13.00 39.25 3.55
3745 7412 3.244181 TGCGATGCTGAAGCCTTATGATA 60.244 43.478 0.00 0.00 41.18 2.15
3802 7486 3.767673 TGTTAGCCCGACTAGTTTGAGAT 59.232 43.478 0.00 0.00 30.79 2.75
3849 7533 8.096621 TGGTGGATAGATTTGTATCCTTAACA 57.903 34.615 13.22 2.63 46.23 2.41
3850 7534 8.723365 TGGTGGATAGATTTGTATCCTTAACAT 58.277 33.333 13.22 0.00 46.23 2.71
3872 7556 2.664402 AGTGAAACAATGGCACTCCT 57.336 45.000 0.00 0.00 38.41 3.69
3876 7561 3.189287 GTGAAACAATGGCACTCCTACAG 59.811 47.826 0.00 0.00 36.32 2.74
3893 7578 0.865111 CAGCACACGATCCAAAACGA 59.135 50.000 0.00 0.00 0.00 3.85
3897 7582 2.030457 GCACACGATCCAAAACGATAGG 59.970 50.000 0.00 0.00 43.77 2.57
3927 7612 2.558359 GTTCTTGGCAATAACCACAGCT 59.442 45.455 15.38 0.00 40.19 4.24
3932 7617 2.091541 GGCAATAACCACAGCTGCTTA 58.908 47.619 15.27 7.57 33.49 3.09
3943 7628 2.035066 ACAGCTGCTTACCTGCAAAAAG 59.965 45.455 15.27 0.00 42.83 2.27
4016 7702 5.359860 TCTTCTATGGTGTACGTCATGTGAT 59.640 40.000 0.00 0.00 0.00 3.06
4038 7734 8.887717 GTGATAAGAAATGTGCATCTTCTAAGT 58.112 33.333 3.60 0.00 37.16 2.24
4051 7747 9.113838 TGCATCTTCTAAGTCCTTTGATAATTC 57.886 33.333 0.00 0.00 0.00 2.17
4097 7793 5.701224 AGGAGTGTTGACTTTGGGAAATTA 58.299 37.500 0.00 0.00 30.16 1.40
4098 7794 6.314917 AGGAGTGTTGACTTTGGGAAATTAT 58.685 36.000 0.00 0.00 30.16 1.28
4099 7795 7.466804 AGGAGTGTTGACTTTGGGAAATTATA 58.533 34.615 0.00 0.00 30.16 0.98
4100 7796 7.611855 AGGAGTGTTGACTTTGGGAAATTATAG 59.388 37.037 0.00 0.00 30.16 1.31
4101 7797 7.393515 GGAGTGTTGACTTTGGGAAATTATAGT 59.606 37.037 0.00 0.00 30.16 2.12
4102 7798 9.444600 GAGTGTTGACTTTGGGAAATTATAGTA 57.555 33.333 0.00 0.00 30.16 1.82
4103 7799 9.802039 AGTGTTGACTTTGGGAAATTATAGTAA 57.198 29.630 0.00 0.00 0.00 2.24
4104 7800 9.836076 GTGTTGACTTTGGGAAATTATAGTAAC 57.164 33.333 0.00 0.00 0.00 2.50
4105 7801 9.575868 TGTTGACTTTGGGAAATTATAGTAACA 57.424 29.630 0.00 0.00 0.00 2.41
4106 7802 9.836076 GTTGACTTTGGGAAATTATAGTAACAC 57.164 33.333 0.00 0.00 0.00 3.32
4107 7803 9.802039 TTGACTTTGGGAAATTATAGTAACACT 57.198 29.630 0.00 0.00 0.00 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
119 128 8.456471 GCTAACACCTAAATTAACCCTACAAAG 58.544 37.037 0.00 0.00 0.00 2.77
136 145 0.900647 ACCTCTCGCAGCTAACACCT 60.901 55.000 0.00 0.00 0.00 4.00
208 217 7.011857 GCATGTCAAAATAAACCCAGACAAAAA 59.988 33.333 0.00 0.00 39.17 1.94
272 281 2.009774 CCTATCCAAACACGAAGCCTG 58.990 52.381 0.00 0.00 0.00 4.85
340 349 3.666345 ACCAGGATACGTCTCTACCTT 57.334 47.619 0.00 0.00 46.39 3.50
438 447 8.287503 CGTGTTCTAAAAGTAATTTGCTACCTT 58.712 33.333 0.00 0.00 32.27 3.50
439 448 7.572539 GCGTGTTCTAAAAGTAATTTGCTACCT 60.573 37.037 0.00 0.00 32.27 3.08
440 449 6.522165 GCGTGTTCTAAAAGTAATTTGCTACC 59.478 38.462 0.00 0.00 32.27 3.18
469 478 5.690857 GCAGAGACTAAACGTAAAGACAGTT 59.309 40.000 4.23 0.00 0.00 3.16
647 657 5.352569 GCTGCACGCAGAAGGATATTATTAT 59.647 40.000 22.81 0.00 46.30 1.28
648 658 4.690748 GCTGCACGCAGAAGGATATTATTA 59.309 41.667 22.81 0.00 46.30 0.98
649 659 3.499918 GCTGCACGCAGAAGGATATTATT 59.500 43.478 22.81 0.00 46.30 1.40
766 776 0.258774 AATCCAAGGAATCCCGGGTG 59.741 55.000 22.86 10.26 37.58 4.61
767 777 1.007607 AAATCCAAGGAATCCCGGGT 58.992 50.000 22.86 0.14 37.58 5.28
780 790 1.697432 ACGGAGACAACAGGAAATCCA 59.303 47.619 1.67 0.00 38.89 3.41
1332 1342 6.316140 ACTCTAGCAGATCTAATGAGCTATCG 59.684 42.308 11.03 8.36 36.73 2.92
1335 1345 6.303054 ACACTCTAGCAGATCTAATGAGCTA 58.697 40.000 10.36 10.36 36.73 3.32
1449 1459 4.943705 ACAAGCTTCAAGAGTTCAAAGTCA 59.056 37.500 0.00 0.00 0.00 3.41
1515 1525 9.481340 TTCATTGCATAGATATCTGAAGTACAC 57.519 33.333 15.79 0.00 0.00 2.90
1530 1540 6.688637 TTCCTCATGACTTTCATTGCATAG 57.311 37.500 0.00 0.00 34.28 2.23
1669 1679 3.184094 GCACACACAGAAATGGTGC 57.816 52.632 0.00 0.00 46.53 5.01
1670 1680 2.124011 GTGCACACACAGAAATGGTG 57.876 50.000 13.17 0.00 46.61 4.17
1709 1722 6.349280 GGCAGATGCAAAACACTACAGATAAA 60.349 38.462 7.19 0.00 44.36 1.40
1782 1796 4.407365 CCCCATTTACAAAGTCCAAGACT 58.593 43.478 0.00 0.00 45.64 3.24
1806 1820 5.248640 TGGTAAAGCTGAAAGAAGAGATGG 58.751 41.667 0.00 0.00 34.07 3.51
1856 1870 5.938125 GTGTAAAGGGAAGACTGCAGAATTA 59.062 40.000 23.35 4.71 0.00 1.40
1857 1871 4.762251 GTGTAAAGGGAAGACTGCAGAATT 59.238 41.667 23.35 14.29 0.00 2.17
1858 1872 4.327680 GTGTAAAGGGAAGACTGCAGAAT 58.672 43.478 23.35 5.00 0.00 2.40
1860 1874 2.038557 GGTGTAAAGGGAAGACTGCAGA 59.961 50.000 23.35 0.00 0.00 4.26
1861 1875 2.039084 AGGTGTAAAGGGAAGACTGCAG 59.961 50.000 13.48 13.48 0.00 4.41
1863 1877 2.861147 AGGTGTAAAGGGAAGACTGC 57.139 50.000 0.00 0.00 0.00 4.40
1864 1878 4.469945 TGGATAGGTGTAAAGGGAAGACTG 59.530 45.833 0.00 0.00 0.00 3.51
1865 1879 4.695606 TGGATAGGTGTAAAGGGAAGACT 58.304 43.478 0.00 0.00 0.00 3.24
1866 1880 4.715297 TCTGGATAGGTGTAAAGGGAAGAC 59.285 45.833 0.00 0.00 0.00 3.01
1868 1882 5.131142 ACATCTGGATAGGTGTAAAGGGAAG 59.869 44.000 0.00 0.00 46.25 3.46
1869 1883 5.036916 ACATCTGGATAGGTGTAAAGGGAA 58.963 41.667 0.00 0.00 46.25 3.97
1870 1884 4.408921 CACATCTGGATAGGTGTAAAGGGA 59.591 45.833 0.00 0.00 46.37 4.20
1871 1885 4.408921 TCACATCTGGATAGGTGTAAAGGG 59.591 45.833 0.00 0.00 46.37 3.95
1872 1886 5.104941 TGTCACATCTGGATAGGTGTAAAGG 60.105 44.000 0.00 0.00 46.37 3.11
1918 1932 2.089600 AGCTCCTCCCTACCACATAC 57.910 55.000 0.00 0.00 0.00 2.39
2078 2103 6.127619 CCTCTGGCGATCATAACATATAGACA 60.128 42.308 0.00 0.00 0.00 3.41
2083 2108 3.198635 CCCCTCTGGCGATCATAACATAT 59.801 47.826 0.00 0.00 0.00 1.78
2084 2109 2.567169 CCCCTCTGGCGATCATAACATA 59.433 50.000 0.00 0.00 0.00 2.29
2085 2110 1.349026 CCCCTCTGGCGATCATAACAT 59.651 52.381 0.00 0.00 0.00 2.71
2121 2146 2.945440 GCATGGCCTACAATGGAAGACA 60.945 50.000 3.32 0.00 0.00 3.41
2186 2211 1.720852 GTGCCGCACATTGAATTTGAC 59.279 47.619 18.79 0.00 34.08 3.18
2255 2280 1.840650 ACTCCACCAGTCTGCAGCT 60.841 57.895 9.47 6.85 0.00 4.24
2312 2337 3.611025 AGATTTCCCCTCAAACAACCA 57.389 42.857 0.00 0.00 0.00 3.67
2313 2338 4.021981 CAGAAGATTTCCCCTCAAACAACC 60.022 45.833 0.00 0.00 0.00 3.77
2394 2419 8.413229 GGGCTGCAACATATAGAAAAATAAGAA 58.587 33.333 0.50 0.00 0.00 2.52
2399 2424 4.344968 GGGGGCTGCAACATATAGAAAAAT 59.655 41.667 0.50 0.00 0.00 1.82
2459 2484 7.201956 GGAAGCTTCATCTTCTCCTTCACTATA 60.202 40.741 27.02 0.00 41.55 1.31
2486 2511 5.572126 GTGAACCTCACTAGACAAATACGTC 59.428 44.000 0.00 0.00 43.73 4.34
2537 2562 1.282875 GCAAGGTCAAGGTGAACGC 59.717 57.895 0.00 0.00 39.55 4.84
2559 2584 4.647424 TTGAAAACAAGCAAAGGTCGAT 57.353 36.364 0.00 0.00 0.00 3.59
2560 2585 4.142271 ACATTGAAAACAAGCAAAGGTCGA 60.142 37.500 0.00 0.00 0.00 4.20
2563 2588 5.083533 TGACATTGAAAACAAGCAAAGGT 57.916 34.783 0.00 0.00 0.00 3.50
2574 2615 5.186797 ACTCAAACTGGGTTGACATTGAAAA 59.813 36.000 0.00 0.00 33.92 2.29
2656 2698 6.708949 GGTGCGATTTTATTTATCTAGGACCA 59.291 38.462 0.00 0.00 0.00 4.02
2677 2719 4.379499 GGTTCACTACAAGCAATAAGGTGC 60.379 45.833 0.00 0.00 45.28 5.01
2685 2729 3.559171 GGATCAGGGTTCACTACAAGCAA 60.559 47.826 0.00 0.00 0.00 3.91
2699 2743 1.055040 GAGACATCCAGGGATCAGGG 58.945 60.000 0.00 0.00 31.62 4.45
2729 2773 5.045942 TCCAACTAACAAGGCATCAGTCATA 60.046 40.000 0.00 0.00 0.00 2.15
2764 2808 2.159057 CCAAATTAGCACCAAGGCATCC 60.159 50.000 0.00 0.00 35.83 3.51
2769 2813 1.560505 AGGCCAAATTAGCACCAAGG 58.439 50.000 5.01 0.00 0.00 3.61
2785 2829 3.521947 ACCGTGTTGAGATAGTAAGGC 57.478 47.619 0.00 0.00 0.00 4.35
3008 3052 2.997897 ACGGGAGAGTCCAGCACC 60.998 66.667 0.00 0.00 38.64 5.01
3174 3218 3.814842 CACAACAGCAGGTTCATCTTACA 59.185 43.478 0.00 0.00 37.72 2.41
3266 6841 9.763465 CAACTAAAGAGTAAAAGAAACAAACGA 57.237 29.630 0.00 0.00 33.58 3.85
3270 6845 9.730420 GATGCAACTAAAGAGTAAAAGAAACAA 57.270 29.630 0.00 0.00 33.58 2.83
3272 6847 9.952188 AAGATGCAACTAAAGAGTAAAAGAAAC 57.048 29.630 0.00 0.00 33.58 2.78
3346 7013 3.507233 TGCCAGGCAGAAAACTTGAATAG 59.493 43.478 11.22 0.00 33.32 1.73
3348 7015 2.318908 TGCCAGGCAGAAAACTTGAAT 58.681 42.857 11.22 0.00 33.32 2.57
3388 7055 3.840437 GTTGCAGAACAGCCACCA 58.160 55.556 0.00 0.00 31.78 4.17
3396 7063 2.095415 GGTTTACATCCGGTTGCAGAAC 60.095 50.000 12.54 13.20 0.00 3.01
3399 7066 1.468520 CAGGTTTACATCCGGTTGCAG 59.531 52.381 12.54 0.00 0.00 4.41
3401 7068 0.170339 GCAGGTTTACATCCGGTTGC 59.830 55.000 12.54 0.00 0.00 4.17
3402 7069 1.468520 CAGCAGGTTTACATCCGGTTG 59.531 52.381 11.06 11.06 0.00 3.77
3403 7070 1.073284 ACAGCAGGTTTACATCCGGTT 59.927 47.619 0.00 0.00 0.00 4.44
3404 7071 0.690762 ACAGCAGGTTTACATCCGGT 59.309 50.000 0.00 0.00 0.00 5.28
3405 7072 1.468520 CAACAGCAGGTTTACATCCGG 59.531 52.381 0.00 0.00 37.72 5.14
3406 7073 2.095768 CACAACAGCAGGTTTACATCCG 60.096 50.000 0.00 0.00 37.72 4.18
3408 7075 2.554032 AGCACAACAGCAGGTTTACATC 59.446 45.455 0.00 0.00 37.72 3.06
3410 7077 2.051334 AGCACAACAGCAGGTTTACA 57.949 45.000 0.00 0.00 37.72 2.41
3411 7078 2.099098 ACAAGCACAACAGCAGGTTTAC 59.901 45.455 0.00 0.00 37.72 2.01
3412 7079 2.374184 ACAAGCACAACAGCAGGTTTA 58.626 42.857 0.00 0.00 37.72 2.01
3413 7080 1.185315 ACAAGCACAACAGCAGGTTT 58.815 45.000 0.00 0.00 37.72 3.27
3414 7081 1.185315 AACAAGCACAACAGCAGGTT 58.815 45.000 0.00 0.00 41.47 3.50
3415 7082 1.185315 AAACAAGCACAACAGCAGGT 58.815 45.000 0.00 0.00 36.85 4.00
3416 7083 2.298411 AAAACAAGCACAACAGCAGG 57.702 45.000 0.00 0.00 36.85 4.85
3417 7084 5.762045 AGTATAAAACAAGCACAACAGCAG 58.238 37.500 0.00 0.00 36.85 4.24
3418 7085 5.766150 AGTATAAAACAAGCACAACAGCA 57.234 34.783 0.00 0.00 36.85 4.41
3419 7086 6.205784 TGAAGTATAAAACAAGCACAACAGC 58.794 36.000 0.00 0.00 0.00 4.40
3420 7087 8.801715 AATGAAGTATAAAACAAGCACAACAG 57.198 30.769 0.00 0.00 0.00 3.16
3421 7088 9.029243 CAAATGAAGTATAAAACAAGCACAACA 57.971 29.630 0.00 0.00 0.00 3.33
3422 7089 9.030301 ACAAATGAAGTATAAAACAAGCACAAC 57.970 29.630 0.00 0.00 0.00 3.32
3423 7090 9.243637 GACAAATGAAGTATAAAACAAGCACAA 57.756 29.630 0.00 0.00 0.00 3.33
3424 7091 8.629158 AGACAAATGAAGTATAAAACAAGCACA 58.371 29.630 0.00 0.00 0.00 4.57
3432 7099 9.967451 TGGGTGATAGACAAATGAAGTATAAAA 57.033 29.630 0.00 0.00 0.00 1.52
3433 7100 9.967451 TTGGGTGATAGACAAATGAAGTATAAA 57.033 29.630 0.00 0.00 0.00 1.40
3434 7101 9.613428 CTTGGGTGATAGACAAATGAAGTATAA 57.387 33.333 0.00 0.00 0.00 0.98
3435 7102 8.988060 TCTTGGGTGATAGACAAATGAAGTATA 58.012 33.333 0.00 0.00 0.00 1.47
3436 7103 7.861629 TCTTGGGTGATAGACAAATGAAGTAT 58.138 34.615 0.00 0.00 0.00 2.12
3437 7104 7.252612 TCTTGGGTGATAGACAAATGAAGTA 57.747 36.000 0.00 0.00 0.00 2.24
3438 7105 6.126863 TCTTGGGTGATAGACAAATGAAGT 57.873 37.500 0.00 0.00 0.00 3.01
3439 7106 5.587844 CCTCTTGGGTGATAGACAAATGAAG 59.412 44.000 0.00 0.00 0.00 3.02
3440 7107 5.500234 CCTCTTGGGTGATAGACAAATGAA 58.500 41.667 0.00 0.00 0.00 2.57
3441 7108 5.102953 CCTCTTGGGTGATAGACAAATGA 57.897 43.478 0.00 0.00 0.00 2.57
3457 7124 1.793820 AAGTCCCAAGCCCCCTCTTG 61.794 60.000 0.00 0.00 42.23 3.02
3458 7125 1.466186 AAGTCCCAAGCCCCCTCTT 60.466 57.895 0.00 0.00 0.00 2.85
3459 7126 2.211279 AAGTCCCAAGCCCCCTCT 59.789 61.111 0.00 0.00 0.00 3.69
3460 7127 2.356667 CAAGTCCCAAGCCCCCTC 59.643 66.667 0.00 0.00 0.00 4.30
3461 7128 3.268032 CCAAGTCCCAAGCCCCCT 61.268 66.667 0.00 0.00 0.00 4.79
3463 7130 3.826265 TTGCCAAGTCCCAAGCCCC 62.826 63.158 0.00 0.00 0.00 5.80
3464 7131 1.610379 ATTGCCAAGTCCCAAGCCC 60.610 57.895 0.00 0.00 0.00 5.19
3465 7132 0.899717 TCATTGCCAAGTCCCAAGCC 60.900 55.000 0.00 0.00 0.00 4.35
3466 7133 0.244721 GTCATTGCCAAGTCCCAAGC 59.755 55.000 0.00 0.00 0.00 4.01
3467 7134 1.915141 AGTCATTGCCAAGTCCCAAG 58.085 50.000 0.00 0.00 0.00 3.61
3468 7135 2.364970 CAAAGTCATTGCCAAGTCCCAA 59.635 45.455 0.00 0.00 31.00 4.12
3469 7136 1.962807 CAAAGTCATTGCCAAGTCCCA 59.037 47.619 0.00 0.00 31.00 4.37
3470 7137 1.963515 ACAAAGTCATTGCCAAGTCCC 59.036 47.619 0.00 0.00 43.13 4.46
3471 7138 2.288395 CCACAAAGTCATTGCCAAGTCC 60.288 50.000 0.00 0.00 43.13 3.85
3472 7139 2.863704 GCCACAAAGTCATTGCCAAGTC 60.864 50.000 0.00 0.00 43.13 3.01
3473 7140 1.069049 GCCACAAAGTCATTGCCAAGT 59.931 47.619 0.00 0.00 43.13 3.16
3474 7141 1.068895 TGCCACAAAGTCATTGCCAAG 59.931 47.619 0.00 0.00 43.13 3.61
3475 7142 1.117994 TGCCACAAAGTCATTGCCAA 58.882 45.000 0.00 0.00 43.13 4.52
3476 7143 1.117994 TTGCCACAAAGTCATTGCCA 58.882 45.000 0.00 0.00 43.13 4.92
3477 7144 2.028748 AGATTGCCACAAAGTCATTGCC 60.029 45.455 0.00 0.00 43.13 4.52
3478 7145 2.991190 CAGATTGCCACAAAGTCATTGC 59.009 45.455 0.00 0.00 43.13 3.56
3479 7146 4.247267 ACAGATTGCCACAAAGTCATTG 57.753 40.909 0.00 0.00 44.95 2.82
3480 7147 4.942761 AACAGATTGCCACAAAGTCATT 57.057 36.364 0.00 0.00 0.00 2.57
3481 7148 4.099881 ACAAACAGATTGCCACAAAGTCAT 59.900 37.500 0.00 0.00 43.13 3.06
3482 7149 3.446873 ACAAACAGATTGCCACAAAGTCA 59.553 39.130 0.00 0.00 43.13 3.41
3483 7150 4.045636 ACAAACAGATTGCCACAAAGTC 57.954 40.909 0.00 0.00 43.13 3.01
3484 7151 4.470334 AACAAACAGATTGCCACAAAGT 57.530 36.364 0.00 0.00 43.13 2.66
3485 7152 5.111293 AGAAACAAACAGATTGCCACAAAG 58.889 37.500 0.00 0.00 43.13 2.77
3486 7153 5.083533 AGAAACAAACAGATTGCCACAAA 57.916 34.783 0.00 0.00 43.13 2.83
3487 7154 4.734398 AGAAACAAACAGATTGCCACAA 57.266 36.364 0.00 0.00 43.13 3.33
3488 7155 4.734398 AAGAAACAAACAGATTGCCACA 57.266 36.364 0.00 0.00 43.13 4.17
3489 7156 6.756542 AGTAAAAGAAACAAACAGATTGCCAC 59.243 34.615 0.00 0.00 43.13 5.01
3490 7157 6.872920 AGTAAAAGAAACAAACAGATTGCCA 58.127 32.000 0.00 0.00 43.13 4.92
3491 7158 7.042725 GGAAGTAAAAGAAACAAACAGATTGCC 60.043 37.037 0.00 0.00 43.13 4.52
3492 7159 7.706607 AGGAAGTAAAAGAAACAAACAGATTGC 59.293 33.333 0.00 0.00 43.13 3.56
3493 7160 9.237846 GAGGAAGTAAAAGAAACAAACAGATTG 57.762 33.333 0.00 0.00 44.95 2.67
3494 7161 9.190317 AGAGGAAGTAAAAGAAACAAACAGATT 57.810 29.630 0.00 0.00 0.00 2.40
3495 7162 8.624776 CAGAGGAAGTAAAAGAAACAAACAGAT 58.375 33.333 0.00 0.00 0.00 2.90
3496 7163 7.610305 ACAGAGGAAGTAAAAGAAACAAACAGA 59.390 33.333 0.00 0.00 0.00 3.41
3497 7164 7.762382 ACAGAGGAAGTAAAAGAAACAAACAG 58.238 34.615 0.00 0.00 0.00 3.16
3498 7165 7.148137 GGACAGAGGAAGTAAAAGAAACAAACA 60.148 37.037 0.00 0.00 0.00 2.83
3499 7166 7.067129 AGGACAGAGGAAGTAAAAGAAACAAAC 59.933 37.037 0.00 0.00 0.00 2.93
3500 7167 7.116736 AGGACAGAGGAAGTAAAAGAAACAAA 58.883 34.615 0.00 0.00 0.00 2.83
3501 7168 6.659824 AGGACAGAGGAAGTAAAAGAAACAA 58.340 36.000 0.00 0.00 0.00 2.83
3502 7169 6.248569 AGGACAGAGGAAGTAAAAGAAACA 57.751 37.500 0.00 0.00 0.00 2.83
3503 7170 7.668492 TCTAGGACAGAGGAAGTAAAAGAAAC 58.332 38.462 0.00 0.00 0.00 2.78
3504 7171 7.850935 TCTAGGACAGAGGAAGTAAAAGAAA 57.149 36.000 0.00 0.00 0.00 2.52
3505 7172 7.850935 TTCTAGGACAGAGGAAGTAAAAGAA 57.149 36.000 0.00 0.00 33.83 2.52
3506 7173 9.716556 ATATTCTAGGACAGAGGAAGTAAAAGA 57.283 33.333 0.00 0.00 33.83 2.52
3512 7179 9.138596 GTTCTTATATTCTAGGACAGAGGAAGT 57.861 37.037 0.00 0.00 33.83 3.01
3513 7180 8.293867 CGTTCTTATATTCTAGGACAGAGGAAG 58.706 40.741 0.00 0.00 33.83 3.46
3514 7181 7.778853 ACGTTCTTATATTCTAGGACAGAGGAA 59.221 37.037 0.00 0.00 33.83 3.36
3515 7182 7.288560 ACGTTCTTATATTCTAGGACAGAGGA 58.711 38.462 0.00 0.00 33.83 3.71
3516 7183 7.513371 ACGTTCTTATATTCTAGGACAGAGG 57.487 40.000 0.00 0.00 33.83 3.69
3517 7184 8.842280 AGAACGTTCTTATATTCTAGGACAGAG 58.158 37.037 24.93 0.00 32.55 3.35
3518 7185 8.749026 AGAACGTTCTTATATTCTAGGACAGA 57.251 34.615 24.93 0.00 32.55 3.41
3519 7186 9.239002 CAAGAACGTTCTTATATTCTAGGACAG 57.761 37.037 35.97 18.59 45.23 3.51
3520 7187 8.963725 TCAAGAACGTTCTTATATTCTAGGACA 58.036 33.333 35.97 9.19 45.23 4.02
3521 7188 9.968870 ATCAAGAACGTTCTTATATTCTAGGAC 57.031 33.333 35.97 3.93 45.23 3.85
3531 7198 9.900710 CTAGCATAGTATCAAGAACGTTCTTAT 57.099 33.333 35.97 28.71 38.49 1.73
3546 7213 8.684520 AGAACGTTTCTAACACTAGCATAGTAT 58.315 33.333 0.46 0.00 44.30 2.12
3547 7214 8.048534 AGAACGTTTCTAACACTAGCATAGTA 57.951 34.615 0.46 0.00 44.30 1.82
3548 7215 6.921914 AGAACGTTTCTAACACTAGCATAGT 58.078 36.000 0.46 0.00 46.01 2.12
3549 7216 7.813852 AAGAACGTTTCTAACACTAGCATAG 57.186 36.000 0.46 0.00 41.50 2.23
3552 7219 9.865321 AATATAAGAACGTTTCTAACACTAGCA 57.135 29.630 0.46 0.00 39.61 3.49
3557 7224 9.550811 CCCAAAATATAAGAACGTTTCTAACAC 57.449 33.333 0.46 0.00 39.61 3.32
3558 7225 9.504708 TCCCAAAATATAAGAACGTTTCTAACA 57.495 29.630 0.46 0.00 39.61 2.41
3559 7226 9.764870 GTCCCAAAATATAAGAACGTTTCTAAC 57.235 33.333 0.46 0.00 39.61 2.34
3560 7227 8.658609 CGTCCCAAAATATAAGAACGTTTCTAA 58.341 33.333 0.46 0.00 39.61 2.10
3561 7228 7.278424 CCGTCCCAAAATATAAGAACGTTTCTA 59.722 37.037 0.46 0.00 39.61 2.10
3562 7229 6.093082 CCGTCCCAAAATATAAGAACGTTTCT 59.907 38.462 0.46 0.00 43.15 2.52
3563 7230 6.092533 TCCGTCCCAAAATATAAGAACGTTTC 59.907 38.462 0.46 0.00 0.00 2.78
3564 7231 5.939296 TCCGTCCCAAAATATAAGAACGTTT 59.061 36.000 0.46 0.00 0.00 3.60
3565 7232 5.490159 TCCGTCCCAAAATATAAGAACGTT 58.510 37.500 0.00 0.00 0.00 3.99
3566 7233 5.088680 TCCGTCCCAAAATATAAGAACGT 57.911 39.130 0.00 0.00 0.00 3.99
3567 7234 4.510340 CCTCCGTCCCAAAATATAAGAACG 59.490 45.833 0.00 0.00 0.00 3.95
3568 7235 4.820173 CCCTCCGTCCCAAAATATAAGAAC 59.180 45.833 0.00 0.00 0.00 3.01
3569 7236 4.722781 TCCCTCCGTCCCAAAATATAAGAA 59.277 41.667 0.00 0.00 0.00 2.52
3570 7237 4.300345 TCCCTCCGTCCCAAAATATAAGA 58.700 43.478 0.00 0.00 0.00 2.10
3571 7238 4.102681 ACTCCCTCCGTCCCAAAATATAAG 59.897 45.833 0.00 0.00 0.00 1.73
3572 7239 4.042174 ACTCCCTCCGTCCCAAAATATAA 58.958 43.478 0.00 0.00 0.00 0.98
3573 7240 3.660959 ACTCCCTCCGTCCCAAAATATA 58.339 45.455 0.00 0.00 0.00 0.86
3574 7241 2.488836 ACTCCCTCCGTCCCAAAATAT 58.511 47.619 0.00 0.00 0.00 1.28
3575 7242 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
3576 7243 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
3577 7244 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
3578 7245 0.115745 AGTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28
3579 7246 0.324091 GAGTACTCCCTCCGTCCCAA 60.324 60.000 12.13 0.00 0.00 4.12
3580 7247 1.212934 AGAGTACTCCCTCCGTCCCA 61.213 60.000 19.38 0.00 31.53 4.37
3581 7248 0.033306 AAGAGTACTCCCTCCGTCCC 60.033 60.000 19.38 0.00 31.53 4.46
3582 7249 1.849977 AAAGAGTACTCCCTCCGTCC 58.150 55.000 19.38 0.00 31.53 4.79
3583 7250 3.619419 ACTAAAGAGTACTCCCTCCGTC 58.381 50.000 19.38 0.00 32.65 4.79
3584 7251 3.735720 ACTAAAGAGTACTCCCTCCGT 57.264 47.619 19.38 7.78 32.65 4.69
3585 7252 3.429135 GCAACTAAAGAGTACTCCCTCCG 60.429 52.174 19.38 7.18 33.58 4.63
3586 7253 3.514309 TGCAACTAAAGAGTACTCCCTCC 59.486 47.826 19.38 0.00 33.58 4.30
3587 7254 4.803098 TGCAACTAAAGAGTACTCCCTC 57.197 45.455 19.38 0.00 33.58 4.30
3588 7255 5.026790 AGATGCAACTAAAGAGTACTCCCT 58.973 41.667 19.38 9.23 33.58 4.20
3589 7256 5.346181 AGATGCAACTAAAGAGTACTCCC 57.654 43.478 19.38 0.00 33.58 4.30
3590 7257 8.950208 ATTAAGATGCAACTAAAGAGTACTCC 57.050 34.615 19.38 2.05 33.58 3.85
3616 7283 9.591792 CACATTCTCAGTGAGATTGATTTAGTA 57.408 33.333 35.10 16.14 40.40 1.82
3617 7284 7.065563 GCACATTCTCAGTGAGATTGATTTAGT 59.934 37.037 35.10 18.82 40.40 2.24
3618 7285 7.065443 TGCACATTCTCAGTGAGATTGATTTAG 59.935 37.037 35.10 23.60 40.40 1.85
3619 7286 6.880529 TGCACATTCTCAGTGAGATTGATTTA 59.119 34.615 35.10 21.66 40.40 1.40
3620 7287 5.708697 TGCACATTCTCAGTGAGATTGATTT 59.291 36.000 35.10 19.89 40.40 2.17
3621 7288 5.250982 TGCACATTCTCAGTGAGATTGATT 58.749 37.500 35.10 20.42 40.40 2.57
3622 7289 4.840271 TGCACATTCTCAGTGAGATTGAT 58.160 39.130 35.10 20.89 40.40 2.57
3623 7290 4.276058 TGCACATTCTCAGTGAGATTGA 57.724 40.909 35.10 19.78 40.40 2.57
3624 7291 4.634443 TCATGCACATTCTCAGTGAGATTG 59.366 41.667 30.23 30.23 42.32 2.67
3625 7292 4.840271 TCATGCACATTCTCAGTGAGATT 58.160 39.130 23.23 16.75 38.56 2.40
3626 7293 4.482952 TCATGCACATTCTCAGTGAGAT 57.517 40.909 23.23 10.86 38.56 2.75
3627 7294 3.967332 TCATGCACATTCTCAGTGAGA 57.033 42.857 19.10 19.10 39.30 3.27
3628 7295 3.749609 TGTTCATGCACATTCTCAGTGAG 59.250 43.478 14.36 14.36 39.30 3.51
3629 7296 3.499537 GTGTTCATGCACATTCTCAGTGA 59.500 43.478 0.43 0.00 39.30 3.41
3630 7297 3.501062 AGTGTTCATGCACATTCTCAGTG 59.499 43.478 0.43 0.00 41.52 3.66
3631 7298 3.501062 CAGTGTTCATGCACATTCTCAGT 59.499 43.478 0.43 0.00 41.52 3.41
3632 7299 3.501062 ACAGTGTTCATGCACATTCTCAG 59.499 43.478 0.43 0.00 41.52 3.35
3633 7300 3.479489 ACAGTGTTCATGCACATTCTCA 58.521 40.909 0.43 0.00 41.52 3.27
3634 7301 4.494350 AACAGTGTTCATGCACATTCTC 57.506 40.909 1.64 0.00 41.52 2.87
3635 7302 4.098349 ACAAACAGTGTTCATGCACATTCT 59.902 37.500 9.40 0.00 37.01 2.40
3636 7303 4.362279 ACAAACAGTGTTCATGCACATTC 58.638 39.130 9.40 0.00 37.01 2.67
3637 7304 4.389890 ACAAACAGTGTTCATGCACATT 57.610 36.364 9.40 0.00 37.01 2.71
3648 7315 7.275560 GCAGAAAACTTGAATAACAAACAGTGT 59.724 33.333 0.00 0.00 44.64 3.55
3649 7316 7.254084 GGCAGAAAACTTGAATAACAAACAGTG 60.254 37.037 0.00 0.00 38.08 3.66
3650 7317 6.756542 GGCAGAAAACTTGAATAACAAACAGT 59.243 34.615 0.00 0.00 38.08 3.55
3651 7318 6.980397 AGGCAGAAAACTTGAATAACAAACAG 59.020 34.615 0.00 0.00 38.08 3.16
3652 7319 6.756074 CAGGCAGAAAACTTGAATAACAAACA 59.244 34.615 0.00 0.00 38.08 2.83
3653 7320 6.200854 CCAGGCAGAAAACTTGAATAACAAAC 59.799 38.462 0.00 0.00 38.08 2.93
3654 7321 6.279882 CCAGGCAGAAAACTTGAATAACAAA 58.720 36.000 0.00 0.00 38.08 2.83
3655 7322 5.738783 GCCAGGCAGAAAACTTGAATAACAA 60.739 40.000 6.55 0.00 36.97 2.83
3656 7323 4.261994 GCCAGGCAGAAAACTTGAATAACA 60.262 41.667 6.55 0.00 0.00 2.41
3657 7324 4.237724 GCCAGGCAGAAAACTTGAATAAC 58.762 43.478 6.55 0.00 0.00 1.89
3658 7325 3.894427 TGCCAGGCAGAAAACTTGAATAA 59.106 39.130 11.22 0.00 33.32 1.40
3659 7326 3.495331 TGCCAGGCAGAAAACTTGAATA 58.505 40.909 11.22 0.00 33.32 1.75
3660 7327 2.318908 TGCCAGGCAGAAAACTTGAAT 58.681 42.857 11.22 0.00 33.32 2.57
3661 7328 1.774110 TGCCAGGCAGAAAACTTGAA 58.226 45.000 11.22 0.00 33.32 2.69
3662 7329 3.511362 TGCCAGGCAGAAAACTTGA 57.489 47.368 11.22 0.00 33.32 3.02
3672 7339 0.609957 CCATGAACTTCTGCCAGGCA 60.610 55.000 15.23 15.23 36.92 4.75
3673 7340 0.322816 TCCATGAACTTCTGCCAGGC 60.323 55.000 3.66 3.66 0.00 4.85
3674 7341 2.089980 CTTCCATGAACTTCTGCCAGG 58.910 52.381 0.00 0.00 0.00 4.45
3675 7342 3.008330 CTCTTCCATGAACTTCTGCCAG 58.992 50.000 0.00 0.00 0.00 4.85
3676 7343 2.290514 CCTCTTCCATGAACTTCTGCCA 60.291 50.000 0.00 0.00 0.00 4.92
3677 7344 2.026822 TCCTCTTCCATGAACTTCTGCC 60.027 50.000 0.00 0.00 0.00 4.85
3678 7345 3.269178 CTCCTCTTCCATGAACTTCTGC 58.731 50.000 0.00 0.00 0.00 4.26
3679 7346 3.269178 GCTCCTCTTCCATGAACTTCTG 58.731 50.000 0.00 0.00 0.00 3.02
3680 7347 2.093764 CGCTCCTCTTCCATGAACTTCT 60.094 50.000 0.00 0.00 0.00 2.85
3681 7348 2.275318 CGCTCCTCTTCCATGAACTTC 58.725 52.381 0.00 0.00 0.00 3.01
3682 7349 1.065854 CCGCTCCTCTTCCATGAACTT 60.066 52.381 0.00 0.00 0.00 2.66
3683 7350 0.539051 CCGCTCCTCTTCCATGAACT 59.461 55.000 0.00 0.00 0.00 3.01
3684 7351 0.250513 ACCGCTCCTCTTCCATGAAC 59.749 55.000 0.00 0.00 0.00 3.18
3685 7352 0.250234 CACCGCTCCTCTTCCATGAA 59.750 55.000 0.00 0.00 0.00 2.57
3686 7353 1.617018 CCACCGCTCCTCTTCCATGA 61.617 60.000 0.00 0.00 0.00 3.07
3687 7354 1.153289 CCACCGCTCCTCTTCCATG 60.153 63.158 0.00 0.00 0.00 3.66
3688 7355 3.036429 GCCACCGCTCCTCTTCCAT 62.036 63.158 0.00 0.00 0.00 3.41
3689 7356 3.706373 GCCACCGCTCCTCTTCCA 61.706 66.667 0.00 0.00 0.00 3.53
3690 7357 3.394836 AGCCACCGCTCCTCTTCC 61.395 66.667 0.00 0.00 43.95 3.46
3691 7358 2.125350 CAGCCACCGCTCCTCTTC 60.125 66.667 0.00 0.00 43.95 2.87
3696 7363 1.448013 GTAGAACAGCCACCGCTCC 60.448 63.158 0.00 0.00 43.95 4.70
3713 7380 1.303561 AGCATCGCACCATGGTTGT 60.304 52.632 16.84 0.00 30.03 3.32
3723 7390 1.134431 TCATAAGGCTTCAGCATCGCA 60.134 47.619 1.30 0.00 44.36 5.10
3745 7412 0.548510 GCCTTCAGGTTAGCCATCCT 59.451 55.000 0.00 0.00 37.57 3.24
3773 7457 1.153881 GTCGGGCTAACACGTCTCC 60.154 63.158 0.00 0.00 0.00 3.71
3802 7486 5.472137 CCATTACCTTCTCGAGTTTTCCAAA 59.528 40.000 13.13 0.00 0.00 3.28
3847 7531 5.590259 GGAGTGCCATTGTTTCACTATATGT 59.410 40.000 0.00 0.00 40.74 2.29
3849 7533 6.006275 AGGAGTGCCATTGTTTCACTATAT 57.994 37.500 0.00 0.00 40.74 0.86
3850 7534 5.435686 AGGAGTGCCATTGTTTCACTATA 57.564 39.130 0.00 0.00 40.74 1.31
3872 7556 1.795872 CGTTTTGGATCGTGTGCTGTA 59.204 47.619 0.00 0.00 0.00 2.74
3876 7561 2.030457 CCTATCGTTTTGGATCGTGTGC 59.970 50.000 0.00 0.00 0.00 4.57
3913 7598 2.159379 GGTAAGCAGCTGTGGTTATTGC 60.159 50.000 16.64 0.00 45.82 3.56
3927 7612 4.744795 TTTTCCTTTTTGCAGGTAAGCA 57.255 36.364 0.00 0.00 43.99 3.91
3932 7617 3.605634 GGTGTTTTTCCTTTTTGCAGGT 58.394 40.909 0.00 0.00 35.15 4.00
3943 7628 6.905544 TTTTTATTCAACGGGTGTTTTTCC 57.094 33.333 0.00 0.00 35.72 3.13
3983 7669 5.277490 CGTACACCATAGAAGATTGCAATGG 60.277 44.000 18.59 13.97 42.32 3.16
3987 7673 4.081917 TGACGTACACCATAGAAGATTGCA 60.082 41.667 0.00 0.00 0.00 4.08
4016 7702 7.624549 AGGACTTAGAAGATGCACATTTCTTA 58.375 34.615 12.66 5.29 32.46 2.10
4081 7777 9.802039 AGTGTTACTATAATTTCCCAAAGTCAA 57.198 29.630 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.