Multiple sequence alignment - TraesCS4A01G133200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G133200 chr4A 100.000 6965 0 0 1 6965 179552614 179545650 0.000000e+00 12863.0
1 TraesCS4A01G133200 chr4B 95.501 2623 87 20 2511 5126 375392899 375395497 0.000000e+00 4161.0
2 TraesCS4A01G133200 chr4B 94.540 989 30 6 899 1881 375391651 375392621 0.000000e+00 1506.0
3 TraesCS4A01G133200 chr4B 93.323 659 15 5 5775 6408 375396245 375396899 0.000000e+00 946.0
4 TraesCS4A01G133200 chr4B 93.114 639 25 3 5156 5777 375395497 375396133 0.000000e+00 918.0
5 TraesCS4A01G133200 chr4B 96.383 553 16 3 6416 6965 375410703 375411254 0.000000e+00 907.0
6 TraesCS4A01G133200 chr4B 91.398 279 12 2 1984 2250 375392619 375392897 8.530000e-99 372.0
7 TraesCS4A01G133200 chr4B 100.000 28 0 0 646 673 662157783 662157756 1.300000e-02 52.8
8 TraesCS4A01G133200 chr4D 96.296 2241 72 10 2509 4742 301512451 301514687 0.000000e+00 3668.0
9 TraesCS4A01G133200 chr4D 95.166 2317 59 11 4695 6965 301514688 301516997 0.000000e+00 3609.0
10 TraesCS4A01G133200 chr4D 93.173 1084 37 12 817 1881 301511110 301512175 0.000000e+00 1557.0
11 TraesCS4A01G133200 chr4D 90.391 281 15 5 1984 2252 301512173 301512453 6.640000e-95 359.0
12 TraesCS4A01G133200 chr4D 96.581 117 3 1 1872 1988 131123841 131123726 7.130000e-45 193.0
13 TraesCS4A01G133200 chr4D 96.581 117 3 1 1872 1988 208443004 208442889 7.130000e-45 193.0
14 TraesCS4A01G133200 chr4D 96.581 117 3 1 1872 1988 508076180 508076065 7.130000e-45 193.0
15 TraesCS4A01G133200 chr2D 91.757 643 52 1 1 642 638336976 638336334 0.000000e+00 893.0
16 TraesCS4A01G133200 chr2D 84.544 647 95 4 1 642 582023275 582023921 2.740000e-178 636.0
17 TraesCS4A01G133200 chr1A 92.794 569 39 2 4 570 42250287 42250855 0.000000e+00 822.0
18 TraesCS4A01G133200 chr1A 89.252 642 60 5 2 642 124239243 124238610 0.000000e+00 795.0
19 TraesCS4A01G133200 chr1A 96.958 263 8 0 2251 2513 7548953 7548691 6.410000e-120 442.0
20 TraesCS4A01G133200 chr1A 96.255 267 9 1 2248 2514 505331966 505332231 2.980000e-118 436.0
21 TraesCS4A01G133200 chr1A 90.580 138 11 2 1880 2015 134973595 134973458 1.540000e-41 182.0
22 TraesCS4A01G133200 chr5D 86.781 643 84 1 1 642 97377029 97376387 0.000000e+00 715.0
23 TraesCS4A01G133200 chr3B 85.913 646 87 3 1 642 679519238 679519883 0.000000e+00 686.0
24 TraesCS4A01G133200 chr3B 93.798 129 7 1 1859 1986 693073874 693074002 7.130000e-45 193.0
25 TraesCS4A01G133200 chr3B 76.705 176 31 8 5162 5334 328706046 328705878 9.620000e-14 89.8
26 TraesCS4A01G133200 chr7A 85.226 643 92 3 2 642 41039129 41039770 0.000000e+00 658.0
27 TraesCS4A01G133200 chr7A 96.654 269 7 2 2247 2514 647915624 647915357 4.960000e-121 446.0
28 TraesCS4A01G133200 chr7A 96.591 264 9 0 2251 2514 167177810 167177547 8.290000e-119 438.0
29 TraesCS4A01G133200 chr6D 84.235 647 95 6 1 642 162273051 162273695 2.130000e-174 623.0
30 TraesCS4A01G133200 chr6D 95.833 120 4 1 1869 1988 75829175 75829293 7.130000e-45 193.0
31 TraesCS4A01G133200 chr6D 100.000 29 0 0 642 670 158228542 158228514 4.000000e-03 54.7
32 TraesCS4A01G133200 chr6D 96.875 32 0 1 642 672 469022570 469022539 1.300000e-02 52.8
33 TraesCS4A01G133200 chr5B 83.801 642 103 1 2 642 527080537 527079896 5.970000e-170 608.0
34 TraesCS4A01G133200 chr2B 84.380 621 89 6 28 642 5789052 5788434 2.780000e-168 603.0
35 TraesCS4A01G133200 chr2B 100.000 30 0 0 646 675 103550459 103550488 1.000000e-03 56.5
36 TraesCS4A01G133200 chr2B 94.444 36 1 1 643 677 366822935 366822900 4.000000e-03 54.7
37 TraesCS4A01G133200 chr6A 97.328 262 7 0 2250 2511 538045820 538046081 4.960000e-121 446.0
38 TraesCS4A01G133200 chr6A 96.241 266 10 0 2249 2514 578932400 578932665 2.980000e-118 436.0
39 TraesCS4A01G133200 chr6A 94.286 35 0 2 643 676 504352242 504352209 1.300000e-02 52.8
40 TraesCS4A01G133200 chr3A 96.629 267 9 0 2245 2511 726454075 726454341 1.780000e-120 444.0
41 TraesCS4A01G133200 chr3A 96.610 118 3 1 1875 1992 296504287 296504171 1.980000e-45 195.0
42 TraesCS4A01G133200 chr3A 76.923 169 31 6 5159 5326 310720651 310720812 9.620000e-14 89.8
43 TraesCS4A01G133200 chr2A 96.958 263 8 0 2249 2511 120914410 120914148 6.410000e-120 442.0
44 TraesCS4A01G133200 chr2A 96.947 262 8 0 2250 2511 653300491 653300230 2.310000e-119 440.0
45 TraesCS4A01G133200 chr2A 96.639 119 3 1 1872 1990 676458902 676459019 5.510000e-46 196.0
46 TraesCS4A01G133200 chr1D 96.581 117 3 1 1872 1988 157307102 157306987 7.130000e-45 193.0
47 TraesCS4A01G133200 chr7B 94.118 68 4 0 1 68 79336732 79336665 3.440000e-18 104.0
48 TraesCS4A01G133200 chr7B 100.000 28 0 0 642 669 4820508 4820481 1.300000e-02 52.8
49 TraesCS4A01G133200 chr7B 100.000 28 0 0 643 670 33570278 33570305 1.300000e-02 52.8
50 TraesCS4A01G133200 chr7D 100.000 28 0 0 643 670 148136423 148136450 1.300000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G133200 chr4A 179545650 179552614 6964 True 12863.00 12863 100.0000 1 6965 1 chr4A.!!$R1 6964
1 TraesCS4A01G133200 chr4B 375391651 375396899 5248 False 1580.60 4161 93.5752 899 6408 5 chr4B.!!$F2 5509
2 TraesCS4A01G133200 chr4B 375410703 375411254 551 False 907.00 907 96.3830 6416 6965 1 chr4B.!!$F1 549
3 TraesCS4A01G133200 chr4D 301511110 301516997 5887 False 2298.25 3668 93.7565 817 6965 4 chr4D.!!$F1 6148
4 TraesCS4A01G133200 chr2D 638336334 638336976 642 True 893.00 893 91.7570 1 642 1 chr2D.!!$R1 641
5 TraesCS4A01G133200 chr2D 582023275 582023921 646 False 636.00 636 84.5440 1 642 1 chr2D.!!$F1 641
6 TraesCS4A01G133200 chr1A 42250287 42250855 568 False 822.00 822 92.7940 4 570 1 chr1A.!!$F1 566
7 TraesCS4A01G133200 chr1A 124238610 124239243 633 True 795.00 795 89.2520 2 642 1 chr1A.!!$R2 640
8 TraesCS4A01G133200 chr5D 97376387 97377029 642 True 715.00 715 86.7810 1 642 1 chr5D.!!$R1 641
9 TraesCS4A01G133200 chr3B 679519238 679519883 645 False 686.00 686 85.9130 1 642 1 chr3B.!!$F1 641
10 TraesCS4A01G133200 chr7A 41039129 41039770 641 False 658.00 658 85.2260 2 642 1 chr7A.!!$F1 640
11 TraesCS4A01G133200 chr6D 162273051 162273695 644 False 623.00 623 84.2350 1 642 1 chr6D.!!$F2 641
12 TraesCS4A01G133200 chr5B 527079896 527080537 641 True 608.00 608 83.8010 2 642 1 chr5B.!!$R1 640
13 TraesCS4A01G133200 chr2B 5788434 5789052 618 True 603.00 603 84.3800 28 642 1 chr2B.!!$R1 614

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
703 710 0.179056 AATGATGTAGAACCGCGGGG 60.179 55.000 31.76 18.33 40.11 5.73 F
1895 1931 0.033796 ATGTACTCCCTCCGTTCGGA 60.034 55.000 13.34 13.34 0.00 4.55 F
2265 2313 0.115745 TTTGTACTCCCTCCGGTCCT 59.884 55.000 0.00 0.00 0.00 3.85 F
2267 2315 0.115745 TGTACTCCCTCCGGTCCTTT 59.884 55.000 0.00 0.00 0.00 3.11 F
2651 2700 0.178970 TAGGACCTCGGGCTATCACC 60.179 60.000 0.00 0.00 0.00 4.02 F
3213 3263 0.475632 ACCTGTGGAGATCAACCCCA 60.476 55.000 0.00 0.00 0.00 4.96 F
3498 3550 0.907486 TTGACATGGAGCCAGAGGAG 59.093 55.000 0.00 0.00 0.00 3.69 F
3612 3664 1.202394 CGCAGAGAGAAGGATGGTCTG 60.202 57.143 0.00 0.00 38.14 3.51 F
5533 5653 0.776810 TTGGACCCAGAATTGGCTGA 59.223 50.000 0.00 0.00 43.58 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1968 2004 0.251297 TGTACTCCCTCCGTTCGGAA 60.251 55.000 14.79 0.04 33.41 4.30 R
2716 2765 0.675633 GCAGCAACAGGGAACATTGT 59.324 50.000 0.00 0.00 32.81 2.71 R
3612 3664 1.075659 AAGAGGTCCCAAAGCTGGC 59.924 57.895 0.00 0.00 41.99 4.85 R
4077 4129 1.884235 ACTGTCAGCAACTACTTGGC 58.116 50.000 0.00 0.00 0.00 4.52 R
4525 4579 1.214175 TGGAGACACAAAAAGGCTGGA 59.786 47.619 0.00 0.00 33.40 3.86 R
4972 5075 2.538861 CACTGCATGAGCTACATCTTCG 59.461 50.000 0.00 0.00 42.74 3.79 R
5312 5415 0.100503 GCTGAGTTTGCGGTTGTTGT 59.899 50.000 0.00 0.00 0.00 3.32 R
5580 5700 1.202891 AGGTTAGGCCACACAAGTTCC 60.203 52.381 5.01 0.00 40.61 3.62 R
6587 6848 1.130054 AGTGGCACATGGGTCAGAGT 61.130 55.000 21.41 0.00 44.52 3.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
114 115 2.355986 CCGACGATGAGAACCCCCA 61.356 63.158 0.00 0.00 0.00 4.96
198 202 2.345244 CAGCGGTTGCAGAGAGGT 59.655 61.111 0.00 0.00 46.23 3.85
278 283 0.820891 CAACACTGGGCTTCACAGCT 60.821 55.000 0.00 0.00 46.44 4.24
316 322 4.532834 ACCTTAGAAACTTTGGCAGTGAA 58.467 39.130 0.00 0.00 35.12 3.18
363 369 4.729868 TCTCCATCTTCAGTCGATCCATA 58.270 43.478 0.00 0.00 0.00 2.74
390 396 3.972133 TCCGACTACAAGGAGGTGATAA 58.028 45.455 0.00 0.00 31.95 1.75
412 418 5.853572 AACAGTATTAAGGGGAAGACCAA 57.146 39.130 0.00 0.00 42.91 3.67
576 583 1.459921 TGTGGTTAGGTCACCCCGT 60.460 57.895 0.00 0.00 38.74 5.28
599 606 1.203075 ACCTCTCTTTCGTCCTGGTCT 60.203 52.381 0.00 0.00 0.00 3.85
628 635 3.741856 TGACGACGTAATAAAGCTTTGCA 59.258 39.130 22.02 2.70 0.00 4.08
642 649 6.930667 AAGCTTTGCAAATTGTCTCAAAAT 57.069 29.167 13.23 0.00 0.00 1.82
643 650 6.930667 AGCTTTGCAAATTGTCTCAAAATT 57.069 29.167 13.23 0.00 0.00 1.82
644 651 8.436046 AAGCTTTGCAAATTGTCTCAAAATTA 57.564 26.923 13.23 0.00 0.00 1.40
645 652 8.611654 AGCTTTGCAAATTGTCTCAAAATTAT 57.388 26.923 13.23 0.00 0.00 1.28
646 653 9.059260 AGCTTTGCAAATTGTCTCAAAATTATT 57.941 25.926 13.23 0.00 0.00 1.40
678 685 7.989826 AGGTAAAGATAAAGATTGACATGTGC 58.010 34.615 1.15 0.00 0.00 4.57
679 686 7.611467 AGGTAAAGATAAAGATTGACATGTGCA 59.389 33.333 1.15 0.00 0.00 4.57
680 687 8.408601 GGTAAAGATAAAGATTGACATGTGCAT 58.591 33.333 1.15 0.00 0.00 3.96
681 688 9.443283 GTAAAGATAAAGATTGACATGTGCATC 57.557 33.333 1.15 4.30 0.00 3.91
682 689 7.634671 AAGATAAAGATTGACATGTGCATCA 57.365 32.000 1.15 0.00 0.00 3.07
683 690 7.024340 AGATAAAGATTGACATGTGCATCAC 57.976 36.000 1.15 0.00 34.56 3.06
699 706 4.201208 CATCACAATGATGTAGAACCGC 57.799 45.455 10.11 0.00 46.80 5.68
700 707 2.267426 TCACAATGATGTAGAACCGCG 58.733 47.619 0.00 0.00 37.82 6.46
701 708 1.327460 CACAATGATGTAGAACCGCGG 59.673 52.381 26.86 26.86 37.82 6.46
702 709 0.937304 CAATGATGTAGAACCGCGGG 59.063 55.000 31.76 11.88 0.00 6.13
703 710 0.179056 AATGATGTAGAACCGCGGGG 60.179 55.000 31.76 18.33 40.11 5.73
727 734 8.725405 GGTTTCAACCTCCTTTTCAATAAAAA 57.275 30.769 1.08 0.00 45.75 1.94
759 766 3.997319 GGTGTACCGGAATAACGAAAC 57.003 47.619 9.46 0.00 35.47 2.78
760 767 2.345341 GGTGTACCGGAATAACGAAACG 59.655 50.000 9.46 0.00 35.47 3.60
761 768 1.991965 TGTACCGGAATAACGAAACGC 59.008 47.619 9.46 0.00 35.47 4.84
763 770 0.388391 ACCGGAATAACGAAACGCGA 60.388 50.000 15.93 0.00 44.57 5.87
764 771 0.925466 CCGGAATAACGAAACGCGAT 59.075 50.000 15.93 0.00 44.57 4.58
765 772 1.071698 CCGGAATAACGAAACGCGATC 60.072 52.381 15.93 10.08 44.57 3.69
766 773 1.584761 CGGAATAACGAAACGCGATCA 59.415 47.619 15.93 0.00 44.57 2.92
767 774 2.346376 CGGAATAACGAAACGCGATCAG 60.346 50.000 15.93 9.65 44.57 2.90
768 775 2.855963 GGAATAACGAAACGCGATCAGA 59.144 45.455 15.93 0.00 44.57 3.27
769 776 3.305094 GGAATAACGAAACGCGATCAGAA 59.695 43.478 15.93 0.00 44.57 3.02
770 777 4.025979 GGAATAACGAAACGCGATCAGAAT 60.026 41.667 15.93 1.27 44.57 2.40
771 778 4.694012 ATAACGAAACGCGATCAGAATC 57.306 40.909 15.93 0.00 44.57 2.52
772 779 1.990799 ACGAAACGCGATCAGAATCA 58.009 45.000 15.93 0.00 44.57 2.57
773 780 1.654105 ACGAAACGCGATCAGAATCAC 59.346 47.619 15.93 0.00 44.57 3.06
774 781 1.920574 CGAAACGCGATCAGAATCACT 59.079 47.619 15.93 0.00 44.57 3.41
775 782 2.345641 CGAAACGCGATCAGAATCACTT 59.654 45.455 15.93 0.00 44.57 3.16
776 783 3.181530 CGAAACGCGATCAGAATCACTTT 60.182 43.478 15.93 0.00 44.57 2.66
777 784 4.666655 CGAAACGCGATCAGAATCACTTTT 60.667 41.667 15.93 0.00 44.57 2.27
778 785 4.749245 AACGCGATCAGAATCACTTTTT 57.251 36.364 15.93 0.00 31.76 1.94
803 810 6.425577 TTTTTAGGGAATCACGTAATTCGG 57.574 37.500 5.35 0.00 44.69 4.30
804 811 2.614829 AGGGAATCACGTAATTCGGG 57.385 50.000 5.35 0.00 45.33 5.14
805 812 1.835531 AGGGAATCACGTAATTCGGGT 59.164 47.619 5.35 0.00 44.19 5.28
806 813 2.237893 AGGGAATCACGTAATTCGGGTT 59.762 45.455 5.35 0.00 44.19 4.11
807 814 3.011818 GGGAATCACGTAATTCGGGTTT 58.988 45.455 5.35 0.00 44.19 3.27
808 815 3.181504 GGGAATCACGTAATTCGGGTTTG 60.182 47.826 5.35 0.00 44.19 2.93
809 816 3.437741 GGAATCACGTAATTCGGGTTTGT 59.562 43.478 5.35 0.00 44.19 2.83
810 817 4.630940 GGAATCACGTAATTCGGGTTTGTA 59.369 41.667 5.35 0.00 44.19 2.41
811 818 5.446340 GGAATCACGTAATTCGGGTTTGTAC 60.446 44.000 5.35 0.00 44.19 2.90
812 819 3.324993 TCACGTAATTCGGGTTTGTACC 58.675 45.455 0.00 0.00 44.19 3.34
840 847 2.123897 AACAGGCCGGCACAAAGT 60.124 55.556 30.85 15.44 0.00 2.66
850 857 3.294493 CACAAAGTGGCCCGTGGG 61.294 66.667 0.00 0.00 38.57 4.61
863 870 1.971357 CCCGTGGGATAATAGCACTCT 59.029 52.381 0.00 0.00 37.50 3.24
865 872 3.056749 CCCGTGGGATAATAGCACTCTAC 60.057 52.174 0.00 0.00 37.50 2.59
874 881 1.906990 TAGCACTCTACCCCGATAGC 58.093 55.000 0.00 0.00 0.00 2.97
1056 1063 1.653918 TCCTCCTCATCCCCTCTCTTT 59.346 52.381 0.00 0.00 0.00 2.52
1065 1072 1.437149 TCCCCTCTCTTTTCCTCCTCA 59.563 52.381 0.00 0.00 0.00 3.86
1306 1337 1.080093 CTAGCGGCTCGTTTGGTGA 60.080 57.895 5.39 0.00 0.00 4.02
1473 1504 7.955864 GTCCAAATTTGTCTCGATTGTTACTAC 59.044 37.037 16.73 0.00 0.00 2.73
1552 1583 5.028802 TCTGAGAAATGGAGATCAAGAGGT 58.971 41.667 0.00 0.00 0.00 3.85
1553 1584 5.095145 TGAGAAATGGAGATCAAGAGGTG 57.905 43.478 0.00 0.00 0.00 4.00
1554 1585 4.080695 TGAGAAATGGAGATCAAGAGGTGG 60.081 45.833 0.00 0.00 0.00 4.61
1555 1586 4.107072 AGAAATGGAGATCAAGAGGTGGA 58.893 43.478 0.00 0.00 0.00 4.02
1556 1587 4.163839 AGAAATGGAGATCAAGAGGTGGAG 59.836 45.833 0.00 0.00 0.00 3.86
1558 1589 2.744760 TGGAGATCAAGAGGTGGAGAG 58.255 52.381 0.00 0.00 0.00 3.20
1559 1590 2.038659 GGAGATCAAGAGGTGGAGAGG 58.961 57.143 0.00 0.00 0.00 3.69
1560 1591 2.358721 GGAGATCAAGAGGTGGAGAGGA 60.359 54.545 0.00 0.00 0.00 3.71
1561 1592 3.575805 GAGATCAAGAGGTGGAGAGGAT 58.424 50.000 0.00 0.00 0.00 3.24
1563 1594 1.769026 TCAAGAGGTGGAGAGGATCG 58.231 55.000 0.00 0.00 42.67 3.69
1564 1595 1.285078 TCAAGAGGTGGAGAGGATCGA 59.715 52.381 0.00 0.00 42.67 3.59
1565 1596 2.103373 CAAGAGGTGGAGAGGATCGAA 58.897 52.381 0.00 0.00 42.67 3.71
1566 1597 2.497675 CAAGAGGTGGAGAGGATCGAAA 59.502 50.000 0.00 0.00 42.67 3.46
1567 1598 3.039252 AGAGGTGGAGAGGATCGAAAT 57.961 47.619 0.00 0.00 42.67 2.17
1568 1599 2.697751 AGAGGTGGAGAGGATCGAAATG 59.302 50.000 0.00 0.00 42.67 2.32
1569 1600 2.695666 GAGGTGGAGAGGATCGAAATGA 59.304 50.000 0.00 0.00 42.67 2.57
1593 1624 9.734620 TGACAAAATCAAGAGTTCAATTTAGTG 57.265 29.630 0.00 0.00 33.02 2.74
1678 1714 3.353557 ACACGTGCCTTCTCTAGTATGA 58.646 45.455 17.22 0.00 0.00 2.15
1706 1742 6.879458 ACTGTGATTGGAATCTTAGGTGTTAC 59.121 38.462 1.26 0.00 36.39 2.50
1754 1790 8.543293 AAAATGGTGAATGATCCATACAATCT 57.457 30.769 0.00 0.00 42.73 2.40
1762 1798 7.933577 TGAATGATCCATACAATCTTAGGTCAC 59.066 37.037 0.00 0.00 0.00 3.67
1763 1799 7.623999 ATGATCCATACAATCTTAGGTCACT 57.376 36.000 0.00 0.00 0.00 3.41
1764 1800 7.437713 TGATCCATACAATCTTAGGTCACTT 57.562 36.000 0.00 0.00 0.00 3.16
1765 1801 7.275183 TGATCCATACAATCTTAGGTCACTTG 58.725 38.462 0.00 0.00 0.00 3.16
1804 1840 2.734755 TGGATTTAGCCCATCACCAG 57.265 50.000 0.00 0.00 0.00 4.00
1846 1882 4.630069 AGTACGAAATGAAGAATTGGGTCG 59.370 41.667 0.00 0.00 33.94 4.79
1888 1924 5.329399 ATCATCTAGTGATGTACTCCCTCC 58.671 45.833 6.92 0.00 45.76 4.30
1889 1925 3.210232 TCTAGTGATGTACTCCCTCCG 57.790 52.381 0.00 0.00 40.89 4.63
1890 1926 2.508716 TCTAGTGATGTACTCCCTCCGT 59.491 50.000 0.00 0.00 40.89 4.69
1891 1927 2.233305 AGTGATGTACTCCCTCCGTT 57.767 50.000 0.00 0.00 33.17 4.44
1892 1928 2.100989 AGTGATGTACTCCCTCCGTTC 58.899 52.381 0.00 0.00 33.17 3.95
1893 1929 1.100510 TGATGTACTCCCTCCGTTCG 58.899 55.000 0.00 0.00 0.00 3.95
1894 1930 0.384669 GATGTACTCCCTCCGTTCGG 59.615 60.000 4.74 4.74 0.00 4.30
1895 1931 0.033796 ATGTACTCCCTCCGTTCGGA 60.034 55.000 13.34 13.34 0.00 4.55
1896 1932 0.251297 TGTACTCCCTCCGTTCGGAA 60.251 55.000 14.79 0.04 33.41 4.30
1897 1933 1.109609 GTACTCCCTCCGTTCGGAAT 58.890 55.000 14.79 2.09 33.41 3.01
1898 1934 1.479730 GTACTCCCTCCGTTCGGAATT 59.520 52.381 14.79 0.00 33.41 2.17
1899 1935 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
1900 1936 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
1901 1937 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
1902 1938 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
1903 1939 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
1904 1940 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
1905 1941 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
1906 1942 3.368116 CCTCCGTTCGGAATTACTTGTCT 60.368 47.826 14.79 0.00 33.41 3.41
1907 1943 3.841643 TCCGTTCGGAATTACTTGTCTC 58.158 45.455 11.66 0.00 0.00 3.36
1908 1944 2.597305 CCGTTCGGAATTACTTGTCTCG 59.403 50.000 5.19 0.00 0.00 4.04
1909 1945 2.597305 CGTTCGGAATTACTTGTCTCGG 59.403 50.000 0.00 0.00 0.00 4.63
1910 1946 3.671433 CGTTCGGAATTACTTGTCTCGGA 60.671 47.826 0.00 0.00 0.00 4.55
1911 1947 4.430908 GTTCGGAATTACTTGTCTCGGAT 58.569 43.478 0.00 0.00 0.00 4.18
1912 1948 5.585390 GTTCGGAATTACTTGTCTCGGATA 58.415 41.667 0.00 0.00 0.00 2.59
1913 1949 6.214399 GTTCGGAATTACTTGTCTCGGATAT 58.786 40.000 0.00 0.00 0.00 1.63
1914 1950 5.769367 TCGGAATTACTTGTCTCGGATATG 58.231 41.667 0.00 0.00 0.00 1.78
1915 1951 4.923871 CGGAATTACTTGTCTCGGATATGG 59.076 45.833 0.00 0.00 0.00 2.74
1916 1952 5.278808 CGGAATTACTTGTCTCGGATATGGA 60.279 44.000 0.00 0.00 0.00 3.41
1917 1953 6.572509 CGGAATTACTTGTCTCGGATATGGAT 60.573 42.308 0.00 0.00 0.00 3.41
1918 1954 6.591834 GGAATTACTTGTCTCGGATATGGATG 59.408 42.308 0.00 0.00 0.00 3.51
1919 1955 6.672266 ATTACTTGTCTCGGATATGGATGT 57.328 37.500 0.00 0.00 0.00 3.06
1920 1956 7.776618 ATTACTTGTCTCGGATATGGATGTA 57.223 36.000 0.00 0.00 0.00 2.29
1921 1957 7.776618 TTACTTGTCTCGGATATGGATGTAT 57.223 36.000 0.00 0.00 0.00 2.29
1922 1958 6.274157 ACTTGTCTCGGATATGGATGTATC 57.726 41.667 0.00 0.00 0.00 2.24
1923 1959 6.013379 ACTTGTCTCGGATATGGATGTATCT 58.987 40.000 0.00 0.00 32.78 1.98
1924 1960 7.175797 ACTTGTCTCGGATATGGATGTATCTA 58.824 38.462 0.00 0.00 32.78 1.98
1925 1961 7.338196 ACTTGTCTCGGATATGGATGTATCTAG 59.662 40.741 0.00 0.00 32.78 2.43
1926 1962 6.958767 TGTCTCGGATATGGATGTATCTAGA 58.041 40.000 0.00 0.00 32.78 2.43
1927 1963 7.402862 TGTCTCGGATATGGATGTATCTAGAA 58.597 38.462 0.00 0.00 31.35 2.10
1928 1964 7.337184 TGTCTCGGATATGGATGTATCTAGAAC 59.663 40.741 0.00 0.00 31.35 3.01
1929 1965 7.554835 GTCTCGGATATGGATGTATCTAGAACT 59.445 40.741 0.00 0.00 31.35 3.01
1930 1966 8.769359 TCTCGGATATGGATGTATCTAGAACTA 58.231 37.037 0.00 0.00 32.78 2.24
1931 1967 9.397280 CTCGGATATGGATGTATCTAGAACTAA 57.603 37.037 0.00 0.00 32.78 2.24
1932 1968 9.749340 TCGGATATGGATGTATCTAGAACTAAA 57.251 33.333 0.00 0.00 32.78 1.85
1959 1995 9.755804 ATACATCTATATACATCCATTTCTGCG 57.244 33.333 0.00 0.00 0.00 5.18
1960 1996 7.840931 ACATCTATATACATCCATTTCTGCGA 58.159 34.615 0.00 0.00 0.00 5.10
1961 1997 7.761704 ACATCTATATACATCCATTTCTGCGAC 59.238 37.037 0.00 0.00 0.00 5.19
1962 1998 7.227049 TCTATATACATCCATTTCTGCGACA 57.773 36.000 0.00 0.00 0.00 4.35
1963 1999 7.666623 TCTATATACATCCATTTCTGCGACAA 58.333 34.615 0.00 0.00 0.00 3.18
1964 2000 6.791887 ATATACATCCATTTCTGCGACAAG 57.208 37.500 0.00 0.00 0.00 3.16
1965 2001 2.783135 ACATCCATTTCTGCGACAAGT 58.217 42.857 0.00 0.00 0.00 3.16
1966 2002 3.937814 ACATCCATTTCTGCGACAAGTA 58.062 40.909 0.00 0.00 0.00 2.24
1967 2003 4.323417 ACATCCATTTCTGCGACAAGTAA 58.677 39.130 0.00 0.00 0.00 2.24
1968 2004 4.943705 ACATCCATTTCTGCGACAAGTAAT 59.056 37.500 0.00 0.00 0.00 1.89
1969 2005 5.415701 ACATCCATTTCTGCGACAAGTAATT 59.584 36.000 0.00 0.00 0.00 1.40
1970 2006 5.545658 TCCATTTCTGCGACAAGTAATTC 57.454 39.130 0.00 0.00 0.00 2.17
1971 2007 4.394920 TCCATTTCTGCGACAAGTAATTCC 59.605 41.667 0.00 0.00 0.00 3.01
1972 2008 4.334443 CATTTCTGCGACAAGTAATTCCG 58.666 43.478 0.00 0.00 0.00 4.30
1973 2009 3.306917 TTCTGCGACAAGTAATTCCGA 57.693 42.857 0.00 0.00 0.00 4.55
1974 2010 3.306917 TCTGCGACAAGTAATTCCGAA 57.693 42.857 0.00 0.00 0.00 4.30
1975 2011 2.991190 TCTGCGACAAGTAATTCCGAAC 59.009 45.455 0.00 0.00 0.00 3.95
1976 2012 1.722464 TGCGACAAGTAATTCCGAACG 59.278 47.619 0.00 0.00 0.00 3.95
1977 2013 1.060122 GCGACAAGTAATTCCGAACGG 59.940 52.381 6.94 6.94 0.00 4.44
1978 2014 2.598589 CGACAAGTAATTCCGAACGGA 58.401 47.619 12.04 12.04 43.52 4.69
1979 2015 2.597305 CGACAAGTAATTCCGAACGGAG 59.403 50.000 15.34 5.60 46.06 4.63
1980 2016 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
1981 2017 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
1982 2018 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
1983 2019 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
1984 2020 1.479730 GTAATTCCGAACGGAGGGAGT 59.520 52.381 15.34 4.12 46.06 3.85
1985 2021 1.856629 AATTCCGAACGGAGGGAGTA 58.143 50.000 15.34 1.05 46.06 2.59
1986 2022 1.109609 ATTCCGAACGGAGGGAGTAC 58.890 55.000 15.34 0.00 46.06 2.73
2013 2049 3.065786 CCATGATGGACGAGGTGATTTTG 59.934 47.826 5.27 0.00 40.96 2.44
2018 2054 1.068541 GGACGAGGTGATTTTGTTGCC 60.069 52.381 0.00 0.00 0.00 4.52
2053 2089 7.661040 CCTTTTATGTCTCTTGTTTGGATGTT 58.339 34.615 0.00 0.00 0.00 2.71
2073 2109 2.916702 TGGTGCATACATGAGCCTAG 57.083 50.000 0.00 0.00 0.00 3.02
2086 2122 0.605589 AGCCTAGTTTCGTGCAACCC 60.606 55.000 0.00 0.00 0.00 4.11
2128 2164 7.398024 TGAAGAAATTAAGGCTAGAAAGAGCT 58.602 34.615 0.00 0.00 42.43 4.09
2152 2188 3.617263 GGTATTCCAGTTAACAGTGAGCG 59.383 47.826 8.61 0.00 0.00 5.03
2193 2241 4.023193 CACCAATCACTTGAAGTAACACCC 60.023 45.833 0.00 0.00 34.04 4.61
2200 2248 3.393278 ACTTGAAGTAACACCCCTGCTAA 59.607 43.478 0.00 0.00 0.00 3.09
2260 2308 3.121738 ACAAAGTTTGTACTCCCTCCG 57.878 47.619 19.59 0.00 43.27 4.63
2261 2309 2.224450 ACAAAGTTTGTACTCCCTCCGG 60.224 50.000 19.59 0.00 43.27 5.14
2262 2310 1.725803 AAGTTTGTACTCCCTCCGGT 58.274 50.000 0.00 0.00 31.99 5.28
2263 2311 1.264295 AGTTTGTACTCCCTCCGGTC 58.736 55.000 0.00 0.00 0.00 4.79
2264 2312 0.248565 GTTTGTACTCCCTCCGGTCC 59.751 60.000 0.00 0.00 0.00 4.46
2265 2313 0.115745 TTTGTACTCCCTCCGGTCCT 59.884 55.000 0.00 0.00 0.00 3.85
2266 2314 0.115745 TTGTACTCCCTCCGGTCCTT 59.884 55.000 0.00 0.00 0.00 3.36
2267 2315 0.115745 TGTACTCCCTCCGGTCCTTT 59.884 55.000 0.00 0.00 0.00 3.11
2268 2316 1.273759 GTACTCCCTCCGGTCCTTTT 58.726 55.000 0.00 0.00 0.00 2.27
2269 2317 1.627329 GTACTCCCTCCGGTCCTTTTT 59.373 52.381 0.00 0.00 0.00 1.94
2270 2318 2.034436 ACTCCCTCCGGTCCTTTTTA 57.966 50.000 0.00 0.00 0.00 1.52
2271 2319 1.627329 ACTCCCTCCGGTCCTTTTTAC 59.373 52.381 0.00 0.00 0.00 2.01
2272 2320 1.907255 CTCCCTCCGGTCCTTTTTACT 59.093 52.381 0.00 0.00 0.00 2.24
2273 2321 1.904537 TCCCTCCGGTCCTTTTTACTC 59.095 52.381 0.00 0.00 0.00 2.59
2274 2322 1.907255 CCCTCCGGTCCTTTTTACTCT 59.093 52.381 0.00 0.00 0.00 3.24
2275 2323 2.354805 CCCTCCGGTCCTTTTTACTCTG 60.355 54.545 0.00 0.00 0.00 3.35
2276 2324 2.347731 CTCCGGTCCTTTTTACTCTGC 58.652 52.381 0.00 0.00 0.00 4.26
2277 2325 1.695242 TCCGGTCCTTTTTACTCTGCA 59.305 47.619 0.00 0.00 0.00 4.41
2278 2326 2.304761 TCCGGTCCTTTTTACTCTGCAT 59.695 45.455 0.00 0.00 0.00 3.96
2279 2327 3.516300 TCCGGTCCTTTTTACTCTGCATA 59.484 43.478 0.00 0.00 0.00 3.14
2280 2328 4.163458 TCCGGTCCTTTTTACTCTGCATAT 59.837 41.667 0.00 0.00 0.00 1.78
2281 2329 4.881850 CCGGTCCTTTTTACTCTGCATATT 59.118 41.667 0.00 0.00 0.00 1.28
2282 2330 6.053005 CCGGTCCTTTTTACTCTGCATATTA 58.947 40.000 0.00 0.00 0.00 0.98
2283 2331 6.202954 CCGGTCCTTTTTACTCTGCATATTAG 59.797 42.308 0.00 0.00 0.00 1.73
2284 2332 6.984474 CGGTCCTTTTTACTCTGCATATTAGA 59.016 38.462 0.00 0.00 0.00 2.10
2285 2333 7.494625 CGGTCCTTTTTACTCTGCATATTAGAA 59.505 37.037 0.00 0.00 0.00 2.10
2286 2334 9.343539 GGTCCTTTTTACTCTGCATATTAGAAT 57.656 33.333 0.00 0.00 0.00 2.40
2296 2344 8.703743 ACTCTGCATATTAGAATTCTCTGAAGT 58.296 33.333 12.24 7.56 32.70 3.01
2297 2345 9.195411 CTCTGCATATTAGAATTCTCTGAAGTC 57.805 37.037 12.24 0.25 32.70 3.01
2298 2346 8.699130 TCTGCATATTAGAATTCTCTGAAGTCA 58.301 33.333 12.24 3.02 32.70 3.41
2299 2347 9.322773 CTGCATATTAGAATTCTCTGAAGTCAA 57.677 33.333 12.24 0.00 32.70 3.18
2300 2348 9.671279 TGCATATTAGAATTCTCTGAAGTCAAA 57.329 29.630 12.24 0.00 32.70 2.69
2301 2349 9.928236 GCATATTAGAATTCTCTGAAGTCAAAC 57.072 33.333 12.24 0.00 32.70 2.93
2323 2371 6.445357 ACTTCACAAAGTTTGACCGTATTT 57.555 33.333 22.23 0.00 43.28 1.40
2324 2372 7.556733 ACTTCACAAAGTTTGACCGTATTTA 57.443 32.000 22.23 0.00 43.28 1.40
2325 2373 8.161699 ACTTCACAAAGTTTGACCGTATTTAT 57.838 30.769 22.23 0.00 43.28 1.40
2326 2374 9.275398 ACTTCACAAAGTTTGACCGTATTTATA 57.725 29.630 22.23 0.00 43.28 0.98
2329 2377 9.438228 TCACAAAGTTTGACCGTATTTATATGA 57.562 29.630 22.23 7.49 0.00 2.15
2352 2400 8.692110 TGAAAAATAATCAACATCTGTCATGC 57.308 30.769 0.00 0.00 0.00 4.06
2353 2401 8.525316 TGAAAAATAATCAACATCTGTCATGCT 58.475 29.630 0.00 0.00 0.00 3.79
2358 2406 8.743085 ATAATCAACATCTGTCATGCTAAAGT 57.257 30.769 0.00 0.00 0.00 2.66
2359 2407 7.458409 AATCAACATCTGTCATGCTAAAGTT 57.542 32.000 0.00 0.00 0.00 2.66
2360 2408 8.565896 AATCAACATCTGTCATGCTAAAGTTA 57.434 30.769 0.00 0.00 0.00 2.24
2361 2409 8.743085 ATCAACATCTGTCATGCTAAAGTTAT 57.257 30.769 0.00 0.00 0.00 1.89
2362 2410 9.836864 ATCAACATCTGTCATGCTAAAGTTATA 57.163 29.630 0.00 0.00 0.00 0.98
2363 2411 9.098355 TCAACATCTGTCATGCTAAAGTTATAC 57.902 33.333 0.00 0.00 0.00 1.47
2364 2412 8.882736 CAACATCTGTCATGCTAAAGTTATACA 58.117 33.333 0.00 0.00 0.00 2.29
2365 2413 9.448438 AACATCTGTCATGCTAAAGTTATACAA 57.552 29.630 0.00 0.00 0.00 2.41
2366 2414 9.618890 ACATCTGTCATGCTAAAGTTATACAAT 57.381 29.630 0.00 0.00 0.00 2.71
2392 2440 8.627208 ATGAAACTTTAAGTCATGACACATCT 57.373 30.769 27.02 3.53 30.84 2.90
2393 2441 9.725019 ATGAAACTTTAAGTCATGACACATCTA 57.275 29.630 27.02 7.86 30.84 1.98
2394 2442 9.725019 TGAAACTTTAAGTCATGACACATCTAT 57.275 29.630 27.02 7.36 0.00 1.98
2397 2445 9.725019 AACTTTAAGTCATGACACATCTATTGA 57.275 29.630 27.02 5.47 0.00 2.57
2398 2446 9.896645 ACTTTAAGTCATGACACATCTATTGAT 57.103 29.630 27.02 0.00 0.00 2.57
2423 2471 9.811995 ATATTGATTTCAGATTGTGAATGTTGG 57.188 29.630 0.00 0.00 44.89 3.77
2424 2472 6.653526 TGATTTCAGATTGTGAATGTTGGT 57.346 33.333 0.00 0.00 44.89 3.67
2425 2473 7.757941 TGATTTCAGATTGTGAATGTTGGTA 57.242 32.000 0.00 0.00 44.89 3.25
2426 2474 7.592938 TGATTTCAGATTGTGAATGTTGGTAC 58.407 34.615 0.00 0.00 44.89 3.34
2427 2475 7.448161 TGATTTCAGATTGTGAATGTTGGTACT 59.552 33.333 0.00 0.00 44.89 2.73
2428 2476 7.581213 TTTCAGATTGTGAATGTTGGTACTT 57.419 32.000 0.00 0.00 44.89 2.24
2429 2477 7.581213 TTCAGATTGTGAATGTTGGTACTTT 57.419 32.000 0.00 0.00 40.45 2.66
2430 2478 7.581213 TCAGATTGTGAATGTTGGTACTTTT 57.419 32.000 0.00 0.00 29.64 2.27
2431 2479 8.006298 TCAGATTGTGAATGTTGGTACTTTTT 57.994 30.769 0.00 0.00 29.64 1.94
2460 2508 3.263602 GTTGGTCAAACTTTACGAGGC 57.736 47.619 0.00 0.00 35.75 4.70
2461 2509 2.876550 GTTGGTCAAACTTTACGAGGCT 59.123 45.455 0.00 0.00 35.75 4.58
2462 2510 2.762745 TGGTCAAACTTTACGAGGCTC 58.237 47.619 3.87 3.87 0.00 4.70
2463 2511 1.725164 GGTCAAACTTTACGAGGCTCG 59.275 52.381 33.42 33.42 46.93 5.03
2464 2512 2.608752 GGTCAAACTTTACGAGGCTCGA 60.609 50.000 40.35 22.26 43.74 4.04
2465 2513 2.407696 GTCAAACTTTACGAGGCTCGAC 59.592 50.000 40.35 21.71 43.74 4.20
2466 2514 2.295349 TCAAACTTTACGAGGCTCGACT 59.705 45.455 40.35 23.18 43.74 4.18
2467 2515 3.057734 CAAACTTTACGAGGCTCGACTT 58.942 45.455 40.35 22.44 43.74 3.01
2468 2516 2.633199 ACTTTACGAGGCTCGACTTC 57.367 50.000 40.35 0.80 43.74 3.01
2469 2517 1.884579 ACTTTACGAGGCTCGACTTCA 59.115 47.619 40.35 18.73 43.74 3.02
2470 2518 2.095161 ACTTTACGAGGCTCGACTTCAG 60.095 50.000 40.35 27.05 43.74 3.02
2471 2519 1.531423 TTACGAGGCTCGACTTCAGT 58.469 50.000 40.35 20.23 43.74 3.41
2472 2520 1.085091 TACGAGGCTCGACTTCAGTC 58.915 55.000 40.35 0.00 43.74 3.51
2473 2521 0.889638 ACGAGGCTCGACTTCAGTCA 60.890 55.000 40.35 0.00 43.74 3.41
2474 2522 0.241213 CGAGGCTCGACTTCAGTCAA 59.759 55.000 32.07 0.00 43.74 3.18
2475 2523 1.335964 CGAGGCTCGACTTCAGTCAAA 60.336 52.381 32.07 0.00 43.74 2.69
2476 2524 2.672478 CGAGGCTCGACTTCAGTCAAAT 60.672 50.000 32.07 0.00 43.74 2.32
2477 2525 2.926838 GAGGCTCGACTTCAGTCAAATC 59.073 50.000 0.00 0.00 44.99 2.17
2478 2526 2.564947 AGGCTCGACTTCAGTCAAATCT 59.435 45.455 7.71 0.00 44.99 2.40
2479 2527 3.007398 AGGCTCGACTTCAGTCAAATCTT 59.993 43.478 7.71 0.00 44.99 2.40
2480 2528 4.220821 AGGCTCGACTTCAGTCAAATCTTA 59.779 41.667 7.71 0.00 44.99 2.10
2481 2529 5.105146 AGGCTCGACTTCAGTCAAATCTTAT 60.105 40.000 7.71 0.00 44.99 1.73
2482 2530 6.096987 AGGCTCGACTTCAGTCAAATCTTATA 59.903 38.462 7.71 0.00 44.99 0.98
2483 2531 6.926272 GGCTCGACTTCAGTCAAATCTTATAT 59.074 38.462 7.71 0.00 44.99 0.86
2484 2532 7.095857 GGCTCGACTTCAGTCAAATCTTATATG 60.096 40.741 7.71 0.00 44.99 1.78
2485 2533 7.568497 GCTCGACTTCAGTCAAATCTTATATGC 60.568 40.741 7.71 0.00 44.99 3.14
2486 2534 6.417930 TCGACTTCAGTCAAATCTTATATGCG 59.582 38.462 7.71 0.00 44.99 4.73
2487 2535 6.417930 CGACTTCAGTCAAATCTTATATGCGA 59.582 38.462 7.71 0.00 44.99 5.10
2488 2536 7.043391 CGACTTCAGTCAAATCTTATATGCGAA 60.043 37.037 7.71 0.00 44.99 4.70
2489 2537 7.910304 ACTTCAGTCAAATCTTATATGCGAAC 58.090 34.615 0.00 0.00 0.00 3.95
2490 2538 7.766278 ACTTCAGTCAAATCTTATATGCGAACT 59.234 33.333 0.00 0.00 0.00 3.01
2491 2539 9.249457 CTTCAGTCAAATCTTATATGCGAACTA 57.751 33.333 0.00 0.00 0.00 2.24
2492 2540 9.594478 TTCAGTCAAATCTTATATGCGAACTAA 57.406 29.630 0.00 0.00 0.00 2.24
2493 2541 9.594478 TCAGTCAAATCTTATATGCGAACTAAA 57.406 29.630 0.00 0.00 0.00 1.85
2500 2548 7.781548 TCTTATATGCGAACTAAAAAGGACC 57.218 36.000 0.00 0.00 0.00 4.46
2501 2549 6.477688 TCTTATATGCGAACTAAAAAGGACCG 59.522 38.462 0.00 0.00 0.00 4.79
2502 2550 1.515081 TGCGAACTAAAAAGGACCGG 58.485 50.000 0.00 0.00 0.00 5.28
2503 2551 1.070445 TGCGAACTAAAAAGGACCGGA 59.930 47.619 9.46 0.00 0.00 5.14
2504 2552 1.730612 GCGAACTAAAAAGGACCGGAG 59.269 52.381 9.46 0.00 0.00 4.63
2542 2590 9.539825 GATCATCTTAAATTCTTACAGAGAGCA 57.460 33.333 0.00 0.00 35.37 4.26
2640 2689 7.255035 GGTTAACTTGTTTTCTGTTAGGACCTC 60.255 40.741 0.00 0.00 30.46 3.85
2651 2700 0.178970 TAGGACCTCGGGCTATCACC 60.179 60.000 0.00 0.00 0.00 4.02
2659 2708 2.366916 CTCGGGCTATCACCTGATTCTT 59.633 50.000 0.00 0.00 44.21 2.52
2681 2730 2.257409 GACCGCCATGTCCACCATCT 62.257 60.000 0.00 0.00 0.00 2.90
2716 2765 4.232091 ACAGTCTAACTCCCTTCCTTCAA 58.768 43.478 0.00 0.00 0.00 2.69
2741 2790 1.000938 GTTCCCTGTTGCTGCAAAGAG 60.001 52.381 17.80 15.04 0.00 2.85
2784 2833 3.067180 CCAGCAAGATGTCACAACAACTT 59.933 43.478 0.00 0.00 46.05 2.66
2909 2958 5.221048 GCAGTTCAAAGCTTCCTTCAAACTA 60.221 40.000 0.00 0.00 35.59 2.24
3081 3131 7.384932 GTGCTCATTTTGTTGCTAAAATAACCT 59.615 33.333 6.58 0.00 37.97 3.50
3099 3149 3.026694 ACCTACCGGATGTACCACTTAC 58.973 50.000 9.46 0.00 38.90 2.34
3130 3180 9.112725 GAAGTTTTGAAGTACCCTTGTAAGTTA 57.887 33.333 0.00 0.00 0.00 2.24
3137 3187 1.003928 ACCCTTGTAAGTTAAGGCCCG 59.996 52.381 0.00 0.00 42.68 6.13
3213 3263 0.475632 ACCTGTGGAGATCAACCCCA 60.476 55.000 0.00 0.00 0.00 4.96
3230 3280 2.316792 CCCATAAGTATTCGACGAGCG 58.683 52.381 0.00 0.00 42.69 5.03
3264 3314 1.394572 CGAGCATTGCGAATTCTGTGA 59.605 47.619 3.52 0.00 0.00 3.58
3277 3327 3.777106 TTCTGTGAGAAGTTCAGCCAT 57.223 42.857 5.50 0.00 36.21 4.40
3329 3380 3.490348 CCTTGTTTCATCTCCAAGGTGT 58.510 45.455 9.04 0.00 46.56 4.16
3342 3393 3.396276 TCCAAGGTGTCCTGATTAAACCA 59.604 43.478 0.00 0.00 32.13 3.67
3405 3457 4.631377 TCAGTTGAGTGTTCTGTCTGTTTG 59.369 41.667 0.00 0.00 0.00 2.93
3498 3550 0.907486 TTGACATGGAGCCAGAGGAG 59.093 55.000 0.00 0.00 0.00 3.69
3612 3664 1.202394 CGCAGAGAGAAGGATGGTCTG 60.202 57.143 0.00 0.00 38.14 3.51
3748 3800 9.569167 TTTCTATGATAAGTACAAACTCTGACG 57.431 33.333 0.00 0.00 33.75 4.35
3759 3811 7.817962 AGTACAAACTCTGACGTATATTTTGCT 59.182 33.333 0.00 0.00 0.00 3.91
3866 3918 4.576330 AGGATTTAGTGGTGGAGAAAGG 57.424 45.455 0.00 0.00 0.00 3.11
3986 4038 5.992217 CACCTATTAGATACTGCAGGTTTCC 59.008 44.000 19.93 2.25 34.18 3.13
4105 4157 9.382244 CAAGTAGTTGCTGACAGTTAATAAAAC 57.618 33.333 3.99 0.00 0.00 2.43
4213 4265 5.703130 GCAAATTAGAGAGTTCAACCAGTCT 59.297 40.000 0.00 0.00 0.00 3.24
4248 4300 4.754114 GGATCATGAATAGCAGTTCCTGTC 59.246 45.833 0.00 0.00 33.43 3.51
4279 4331 6.430925 TGCTGGACTGATTATAATGCCAATAC 59.569 38.462 1.78 0.00 0.00 1.89
4280 4332 6.430925 GCTGGACTGATTATAATGCCAATACA 59.569 38.462 1.78 0.00 0.00 2.29
4282 4334 6.430925 TGGACTGATTATAATGCCAATACAGC 59.569 38.462 1.78 0.00 0.00 4.40
4487 4541 6.980593 TGAACCATTGAGTTAAACTTCCATG 58.019 36.000 0.00 0.00 0.00 3.66
4489 4543 6.976934 ACCATTGAGTTAAACTTCCATGTT 57.023 33.333 0.00 0.00 0.00 2.71
4495 4549 5.894393 TGAGTTAAACTTCCATGTTTTCCCA 59.106 36.000 0.00 0.00 40.23 4.37
4503 4557 5.422012 ACTTCCATGTTTTCCCATATCCAAC 59.578 40.000 0.00 0.00 0.00 3.77
4517 4571 6.372659 CCCATATCCAACGAATTCATTCTAGG 59.627 42.308 6.22 0.00 34.69 3.02
4525 4579 8.082242 CCAACGAATTCATTCTAGGTTTCTTTT 58.918 33.333 6.22 0.00 34.69 2.27
4742 4844 4.161189 TGCCAATCTCCTTGTTTTGTTGAA 59.839 37.500 0.00 0.00 32.61 2.69
4843 4945 5.628193 CACAGAGAATGCTTGTTGAACATTC 59.372 40.000 0.00 0.00 46.43 2.67
4851 4953 4.278170 TGCTTGTTGAACATTCTTACCAGG 59.722 41.667 0.00 0.00 0.00 4.45
4972 5075 5.363101 TCTGGATTAGATGTTGATGCACTC 58.637 41.667 0.00 0.00 0.00 3.51
5035 5138 5.445939 CCAAAACTCCGTTCTGATGATTACG 60.446 44.000 0.00 0.00 0.00 3.18
5263 5366 4.332268 GTGACAAAATTTTGCCTGCTTTCA 59.668 37.500 26.94 18.69 41.79 2.69
5298 5401 7.769044 TCCCACAGCAGATTATAAAGTAAGTTC 59.231 37.037 0.00 0.00 0.00 3.01
5328 5431 3.408288 TTGTACAACAACCGCAAACTC 57.592 42.857 3.59 0.00 32.34 3.01
5374 5477 6.857956 TGTTTCAAGAAAGATTTCGTTTGGA 58.142 32.000 0.00 0.00 41.92 3.53
5376 5479 6.693315 TTCAAGAAAGATTTCGTTTGGACT 57.307 33.333 0.00 0.00 41.92 3.85
5447 5550 3.293311 CTGTTTTCCCACAGCTGATTG 57.707 47.619 23.35 9.25 37.96 2.67
5533 5653 0.776810 TTGGACCCAGAATTGGCTGA 59.223 50.000 0.00 0.00 43.58 4.26
5535 5655 2.204463 TGGACCCAGAATTGGCTGATA 58.796 47.619 0.00 0.00 43.58 2.15
5549 5669 7.910441 ATTGGCTGATAATTTTCTGTTTTGG 57.090 32.000 5.06 0.00 0.00 3.28
5580 5700 1.000955 AGTACTGCCAAAGAGGTGACG 59.999 52.381 0.00 0.00 40.61 4.35
5599 5719 1.244816 GGAACTTGTGTGGCCTAACC 58.755 55.000 3.32 0.00 39.84 2.85
5608 5728 5.244189 TGTGTGGCCTAACCTTTTATGTA 57.756 39.130 3.32 0.00 40.22 2.29
5663 5783 3.326747 GTCTCACCAGGTTGTACACATC 58.673 50.000 0.00 0.00 0.00 3.06
5737 5857 9.990360 TGCTGATAATCAAAATATCATTTGCAT 57.010 25.926 0.00 0.00 38.66 3.96
5752 5872 7.646446 TCATTTGCATCTTTGTCAATCTTTG 57.354 32.000 0.00 0.00 0.00 2.77
5754 5874 8.358895 TCATTTGCATCTTTGTCAATCTTTGTA 58.641 29.630 0.00 0.00 0.00 2.41
5803 6037 5.538118 TGTAGGAACAGTGTTGTGAGTATG 58.462 41.667 14.57 0.00 37.67 2.39
5845 6079 0.038599 TGAAGGGCATGTGCTGTCAT 59.961 50.000 4.84 0.00 41.70 3.06
6125 6362 2.094854 GCAAAGATGGACCAGCTTCTTG 60.095 50.000 24.60 20.08 39.25 3.02
6249 6486 1.444836 TTCTTATGCCCGGTGAAACG 58.555 50.000 0.00 0.00 38.12 3.60
6298 6559 4.703382 CCCATTTGGCCAGGCATA 57.297 55.556 15.19 0.00 0.00 3.14
6299 6560 3.152662 CCCATTTGGCCAGGCATAT 57.847 52.632 15.19 2.59 0.00 1.78
6300 6561 0.971386 CCCATTTGGCCAGGCATATC 59.029 55.000 15.19 0.00 0.00 1.63
6340 6601 1.272147 ACTGGAGTTCTGAATTGCCCC 60.272 52.381 2.21 0.00 0.00 5.80
6381 6642 5.046591 TCTCGTCCTGTAAGATTTGTTGGAT 60.047 40.000 0.00 0.00 34.07 3.41
6587 6848 8.141298 TGTTTATTCAGGACAGGTATTGTAGA 57.859 34.615 0.00 0.00 41.05 2.59
6675 6936 6.098409 TGCTCGGAGGAAGAATACTATTTTCT 59.902 38.462 7.20 0.00 34.95 2.52
6695 6956 2.922740 TTCACTAGTTGGGTGTGGTC 57.077 50.000 0.00 0.00 36.25 4.02
6722 6984 4.305989 TGCAAAAGTTTCTTAGGTGCAG 57.694 40.909 6.34 0.00 35.72 4.41
6737 6999 1.180456 TGCAGTCCAGGCAAATGGTG 61.180 55.000 2.22 0.00 41.43 4.17
6741 7003 1.004745 AGTCCAGGCAAATGGTGTAGG 59.995 52.381 2.22 0.00 41.43 3.18
6790 7052 1.618837 TGGTGAGTGGCTACTGACTTC 59.381 52.381 18.47 4.65 40.39 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
114 115 2.353208 GCTTCGGTCTCTGTGTCTGATT 60.353 50.000 0.00 0.00 0.00 2.57
198 202 0.623723 GCAATGGTTCCTACTCCCCA 59.376 55.000 0.00 0.00 0.00 4.96
278 283 5.343715 TCTAAGGTTGTAGGGTTGGTGATA 58.656 41.667 0.00 0.00 0.00 2.15
316 322 3.537206 GACAGTGCCAACGCCTCCT 62.537 63.158 0.00 0.00 0.00 3.69
363 369 2.588620 CTCCTTGTAGTCGGAGGCTAT 58.411 52.381 0.00 0.00 46.45 2.97
390 396 5.853572 TTGGTCTTCCCCTTAATACTGTT 57.146 39.130 0.00 0.00 0.00 3.16
412 418 1.600663 CGATCGCTCCGTATTCTGCTT 60.601 52.381 0.26 0.00 0.00 3.91
465 471 9.755064 AAACTCACGAACGAAATTATAAGAATG 57.245 29.630 0.14 0.00 0.00 2.67
484 490 3.686726 CACATTGGAGCTCCTAAACTCAC 59.313 47.826 32.28 4.07 36.82 3.51
576 583 3.236896 ACCAGGACGAAAGAGAGGTTTA 58.763 45.455 0.00 0.00 0.00 2.01
599 606 4.858692 GCTTTATTACGTCGTCACCAGTTA 59.141 41.667 0.00 0.00 0.00 2.24
652 659 9.109393 GCACATGTCAATCTTTATCTTTACCTA 57.891 33.333 0.00 0.00 0.00 3.08
653 660 7.611467 TGCACATGTCAATCTTTATCTTTACCT 59.389 33.333 0.00 0.00 0.00 3.08
654 661 7.761409 TGCACATGTCAATCTTTATCTTTACC 58.239 34.615 0.00 0.00 0.00 2.85
655 662 9.443283 GATGCACATGTCAATCTTTATCTTTAC 57.557 33.333 0.00 0.00 0.00 2.01
656 663 9.176460 TGATGCACATGTCAATCTTTATCTTTA 57.824 29.630 15.10 0.00 0.00 1.85
657 664 7.972277 GTGATGCACATGTCAATCTTTATCTTT 59.028 33.333 15.10 0.00 34.08 2.52
658 665 7.121611 TGTGATGCACATGTCAATCTTTATCTT 59.878 33.333 15.10 0.00 39.62 2.40
659 666 6.600427 TGTGATGCACATGTCAATCTTTATCT 59.400 34.615 15.10 0.00 39.62 1.98
660 667 6.788243 TGTGATGCACATGTCAATCTTTATC 58.212 36.000 15.10 4.47 39.62 1.75
661 668 6.762702 TGTGATGCACATGTCAATCTTTAT 57.237 33.333 15.10 0.00 39.62 1.40
662 669 6.572167 TTGTGATGCACATGTCAATCTTTA 57.428 33.333 15.10 3.27 44.16 1.85
663 670 5.456548 TTGTGATGCACATGTCAATCTTT 57.543 34.783 15.10 0.00 44.16 2.52
664 671 5.184287 TCATTGTGATGCACATGTCAATCTT 59.816 36.000 15.10 0.00 44.16 2.40
665 672 4.703093 TCATTGTGATGCACATGTCAATCT 59.297 37.500 15.10 0.00 44.16 2.40
666 673 4.989044 TCATTGTGATGCACATGTCAATC 58.011 39.130 0.00 2.71 44.16 2.67
667 674 5.348164 CATCATTGTGATGCACATGTCAAT 58.652 37.500 6.97 0.00 46.37 2.57
668 675 4.739195 CATCATTGTGATGCACATGTCAA 58.261 39.130 6.97 0.00 46.37 3.18
669 676 4.364415 CATCATTGTGATGCACATGTCA 57.636 40.909 6.97 0.00 46.37 3.58
679 686 2.866156 CGCGGTTCTACATCATTGTGAT 59.134 45.455 0.00 0.00 37.65 3.06
680 687 2.267426 CGCGGTTCTACATCATTGTGA 58.733 47.619 0.00 0.00 36.53 3.58
681 688 1.327460 CCGCGGTTCTACATCATTGTG 59.673 52.381 19.50 0.00 36.53 3.33
682 689 1.651987 CCGCGGTTCTACATCATTGT 58.348 50.000 19.50 0.00 39.98 2.71
683 690 0.937304 CCCGCGGTTCTACATCATTG 59.063 55.000 26.12 0.00 0.00 2.82
684 691 0.179056 CCCCGCGGTTCTACATCATT 60.179 55.000 26.12 0.00 0.00 2.57
685 692 1.335132 ACCCCGCGGTTCTACATCAT 61.335 55.000 26.12 0.00 40.58 2.45
686 693 1.985662 ACCCCGCGGTTCTACATCA 60.986 57.895 26.12 0.00 40.58 3.07
687 694 2.897972 ACCCCGCGGTTCTACATC 59.102 61.111 26.12 0.00 40.58 3.06
700 707 7.636192 TTTTATTGAAAAGGAGGTTGAAACCCC 60.636 37.037 8.62 9.56 38.57 4.95
701 708 7.276658 TTTTATTGAAAAGGAGGTTGAAACCC 58.723 34.615 8.62 0.96 38.57 4.11
702 709 8.725405 TTTTTATTGAAAAGGAGGTTGAAACC 57.275 30.769 3.91 3.91 41.19 3.27
739 746 2.345341 CGTTTCGTTATTCCGGTACACC 59.655 50.000 0.00 0.00 0.00 4.16
740 747 2.222574 GCGTTTCGTTATTCCGGTACAC 60.223 50.000 0.00 0.00 0.00 2.90
741 748 1.991965 GCGTTTCGTTATTCCGGTACA 59.008 47.619 0.00 0.00 0.00 2.90
742 749 1.007114 CGCGTTTCGTTATTCCGGTAC 60.007 52.381 0.00 0.00 0.00 3.34
743 750 1.135546 TCGCGTTTCGTTATTCCGGTA 60.136 47.619 5.77 0.00 39.67 4.02
744 751 0.388391 TCGCGTTTCGTTATTCCGGT 60.388 50.000 5.77 0.00 39.67 5.28
745 752 0.925466 ATCGCGTTTCGTTATTCCGG 59.075 50.000 5.77 0.00 39.67 5.14
746 753 1.584761 TGATCGCGTTTCGTTATTCCG 59.415 47.619 5.77 0.00 39.67 4.30
747 754 2.855963 TCTGATCGCGTTTCGTTATTCC 59.144 45.455 5.77 0.00 39.67 3.01
748 755 4.494597 TTCTGATCGCGTTTCGTTATTC 57.505 40.909 5.77 0.00 39.67 1.75
749 756 4.565166 TGATTCTGATCGCGTTTCGTTATT 59.435 37.500 5.77 0.00 39.67 1.40
750 757 4.026804 GTGATTCTGATCGCGTTTCGTTAT 60.027 41.667 5.77 0.00 39.67 1.89
751 758 3.302434 GTGATTCTGATCGCGTTTCGTTA 59.698 43.478 5.77 0.00 39.67 3.18
752 759 2.092211 GTGATTCTGATCGCGTTTCGTT 59.908 45.455 5.77 0.00 39.67 3.85
753 760 1.654105 GTGATTCTGATCGCGTTTCGT 59.346 47.619 5.77 0.00 39.67 3.85
754 761 1.920574 AGTGATTCTGATCGCGTTTCG 59.079 47.619 5.77 2.13 45.36 3.46
755 762 3.999229 AAGTGATTCTGATCGCGTTTC 57.001 42.857 5.77 5.37 45.36 2.78
756 763 4.749245 AAAAGTGATTCTGATCGCGTTT 57.251 36.364 5.77 7.65 44.19 3.60
757 764 4.749245 AAAAAGTGATTCTGATCGCGTT 57.251 36.364 5.77 0.00 45.36 4.84
780 787 5.354792 CCCGAATTACGTGATTCCCTAAAAA 59.645 40.000 22.84 0.00 40.78 1.94
781 788 4.877251 CCCGAATTACGTGATTCCCTAAAA 59.123 41.667 22.84 0.00 40.78 1.52
782 789 4.080975 ACCCGAATTACGTGATTCCCTAAA 60.081 41.667 22.84 0.00 40.78 1.85
783 790 3.451902 ACCCGAATTACGTGATTCCCTAA 59.548 43.478 22.84 0.00 40.78 2.69
784 791 3.033184 ACCCGAATTACGTGATTCCCTA 58.967 45.455 22.84 0.00 40.78 3.53
785 792 1.835531 ACCCGAATTACGTGATTCCCT 59.164 47.619 22.84 6.70 40.78 4.20
786 793 2.320745 ACCCGAATTACGTGATTCCC 57.679 50.000 22.84 4.87 40.78 3.97
787 794 3.437741 ACAAACCCGAATTACGTGATTCC 59.562 43.478 22.84 9.17 40.78 3.01
788 795 4.673534 ACAAACCCGAATTACGTGATTC 57.326 40.909 20.01 20.01 40.78 2.52
789 796 4.392754 GGTACAAACCCGAATTACGTGATT 59.607 41.667 5.09 5.09 40.21 2.57
790 797 3.934579 GGTACAAACCCGAATTACGTGAT 59.065 43.478 0.00 0.00 40.21 3.06
791 798 3.324993 GGTACAAACCCGAATTACGTGA 58.675 45.455 0.00 0.00 40.21 4.35
792 799 3.727780 GGTACAAACCCGAATTACGTG 57.272 47.619 0.00 0.00 40.21 4.49
802 809 1.601477 CACCCCACGGTACAAACCC 60.601 63.158 0.00 0.00 42.04 4.11
803 810 2.263021 GCACCCCACGGTACAAACC 61.263 63.158 0.00 0.00 42.04 3.27
804 811 2.609759 CGCACCCCACGGTACAAAC 61.610 63.158 0.00 0.00 42.04 2.93
805 812 2.280933 CGCACCCCACGGTACAAA 60.281 61.111 0.00 0.00 42.04 2.83
806 813 2.804912 TTCGCACCCCACGGTACAA 61.805 57.895 0.00 0.00 42.04 2.41
807 814 3.232483 TTCGCACCCCACGGTACA 61.232 61.111 0.00 0.00 42.04 2.90
808 815 2.739671 GTTCGCACCCCACGGTAC 60.740 66.667 0.00 0.00 42.04 3.34
809 816 3.229156 CTGTTCGCACCCCACGGTA 62.229 63.158 0.00 0.00 42.04 4.02
810 817 4.619227 CTGTTCGCACCCCACGGT 62.619 66.667 0.00 0.00 46.31 4.83
821 828 3.254014 CTTTGTGCCGGCCTGTTCG 62.254 63.158 26.77 3.96 0.00 3.95
834 841 1.493854 TATCCCACGGGCCACTTTGT 61.494 55.000 4.39 0.00 34.68 2.83
840 847 1.057275 TGCTATTATCCCACGGGCCA 61.057 55.000 4.39 0.00 34.68 5.36
850 857 5.221087 GCTATCGGGGTAGAGTGCTATTATC 60.221 48.000 0.00 0.00 0.00 1.75
874 881 1.355796 TTGCGTATTTGCCGTCCTCG 61.356 55.000 0.00 0.00 0.00 4.63
985 992 1.918253 CCATGGGAAGGTCAGGGAG 59.082 63.158 2.85 0.00 38.23 4.30
1027 1034 3.682292 ATGAGGAGGAAACGGCGGC 62.682 63.158 13.24 0.00 0.00 6.53
1028 1035 1.521681 GATGAGGAGGAAACGGCGG 60.522 63.158 13.24 0.00 0.00 6.13
1029 1036 1.521681 GGATGAGGAGGAAACGGCG 60.522 63.158 4.80 4.80 0.00 6.46
1030 1037 1.153147 GGGATGAGGAGGAAACGGC 60.153 63.158 0.00 0.00 0.00 5.68
1031 1038 0.983378 AGGGGATGAGGAGGAAACGG 60.983 60.000 0.00 0.00 0.00 4.44
1032 1039 0.466124 GAGGGGATGAGGAGGAAACG 59.534 60.000 0.00 0.00 0.00 3.60
1056 1063 1.410850 GGCGGGATGATGAGGAGGAA 61.411 60.000 0.00 0.00 0.00 3.36
1065 1072 2.121781 AGGATGGGGCGGGATGAT 60.122 61.111 0.00 0.00 0.00 2.45
1097 1128 0.179137 CACGGAGATAGAACGCAGCA 60.179 55.000 0.00 0.00 0.00 4.41
1102 1133 1.944676 GCCGCACGGAGATAGAACG 60.945 63.158 14.43 0.00 37.50 3.95
1106 1137 2.279517 GTGGCCGCACGGAGATAG 60.280 66.667 14.43 0.00 37.50 2.08
1217 1248 2.423947 CCTTTTAGGATCTGCTGCCCAT 60.424 50.000 0.00 0.00 37.67 4.00
1306 1337 1.251251 GCAGACCCAATCAAGCACTT 58.749 50.000 0.00 0.00 32.52 3.16
1473 1504 4.207019 GCAACAATTTCTCAGTGGTTTTCG 59.793 41.667 0.00 0.00 0.00 3.46
1552 1583 4.551702 TTTGTCATTTCGATCCTCTCCA 57.448 40.909 0.00 0.00 0.00 3.86
1553 1584 5.586243 TGATTTTGTCATTTCGATCCTCTCC 59.414 40.000 0.00 0.00 0.00 3.71
1554 1585 6.668541 TGATTTTGTCATTTCGATCCTCTC 57.331 37.500 0.00 0.00 0.00 3.20
1555 1586 6.881065 TCTTGATTTTGTCATTTCGATCCTCT 59.119 34.615 0.00 0.00 36.54 3.69
1556 1587 7.076842 TCTTGATTTTGTCATTTCGATCCTC 57.923 36.000 0.00 0.00 36.54 3.71
1558 1589 6.846350 ACTCTTGATTTTGTCATTTCGATCC 58.154 36.000 0.00 0.00 36.54 3.36
1559 1590 8.017373 TGAACTCTTGATTTTGTCATTTCGATC 58.983 33.333 0.00 0.00 36.54 3.69
1560 1591 7.874940 TGAACTCTTGATTTTGTCATTTCGAT 58.125 30.769 0.00 0.00 36.54 3.59
1561 1592 7.258022 TGAACTCTTGATTTTGTCATTTCGA 57.742 32.000 0.00 0.00 36.54 3.71
1567 1598 9.734620 CACTAAATTGAACTCTTGATTTTGTCA 57.265 29.630 0.00 0.00 29.49 3.58
1568 1599 9.736023 ACACTAAATTGAACTCTTGATTTTGTC 57.264 29.630 0.00 0.00 29.49 3.18
1569 1600 9.736023 GACACTAAATTGAACTCTTGATTTTGT 57.264 29.630 0.00 0.00 31.14 2.83
1633 1669 7.554835 TGTAACTTAAATGGCATCGAAATAGGT 59.445 33.333 0.00 0.00 0.00 3.08
1678 1714 5.707298 CACCTAAGATTCCAATCACAGTTGT 59.293 40.000 2.21 0.00 37.89 3.32
1754 1790 6.065374 TCATTAAACCAAGCAAGTGACCTAA 58.935 36.000 0.00 0.00 0.00 2.69
1762 1798 6.254157 CCATTCGATTCATTAAACCAAGCAAG 59.746 38.462 0.00 0.00 0.00 4.01
1763 1799 6.071672 TCCATTCGATTCATTAAACCAAGCAA 60.072 34.615 0.00 0.00 0.00 3.91
1764 1800 5.417266 TCCATTCGATTCATTAAACCAAGCA 59.583 36.000 0.00 0.00 0.00 3.91
1765 1801 5.890334 TCCATTCGATTCATTAAACCAAGC 58.110 37.500 0.00 0.00 0.00 4.01
1804 1840 1.936547 CTTGGCTTATGAAGGACGAGC 59.063 52.381 0.00 0.00 0.00 5.03
1846 1882 7.325694 AGATGATCCATCAAATTTGGTTGAAC 58.674 34.615 17.90 11.37 42.72 3.18
1881 1917 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
1882 1918 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
1883 1919 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
1884 1920 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
1885 1921 3.846360 AGACAAGTAATTCCGAACGGAG 58.154 45.455 15.34 5.60 46.06 4.63
1886 1922 3.671433 CGAGACAAGTAATTCCGAACGGA 60.671 47.826 12.04 12.04 43.52 4.69
1887 1923 2.597305 CGAGACAAGTAATTCCGAACGG 59.403 50.000 6.94 6.94 0.00 4.44
1888 1924 2.597305 CCGAGACAAGTAATTCCGAACG 59.403 50.000 0.00 0.00 0.00 3.95
1889 1925 3.841643 TCCGAGACAAGTAATTCCGAAC 58.158 45.455 0.00 0.00 0.00 3.95
1890 1926 4.730949 ATCCGAGACAAGTAATTCCGAA 57.269 40.909 0.00 0.00 0.00 4.30
1891 1927 5.278808 CCATATCCGAGACAAGTAATTCCGA 60.279 44.000 0.00 0.00 0.00 4.55
1892 1928 4.923871 CCATATCCGAGACAAGTAATTCCG 59.076 45.833 0.00 0.00 0.00 4.30
1893 1929 6.097915 TCCATATCCGAGACAAGTAATTCC 57.902 41.667 0.00 0.00 0.00 3.01
1894 1930 7.155328 ACATCCATATCCGAGACAAGTAATTC 58.845 38.462 0.00 0.00 0.00 2.17
1895 1931 7.067496 ACATCCATATCCGAGACAAGTAATT 57.933 36.000 0.00 0.00 0.00 1.40
1896 1932 6.672266 ACATCCATATCCGAGACAAGTAAT 57.328 37.500 0.00 0.00 0.00 1.89
1897 1933 7.670140 AGATACATCCATATCCGAGACAAGTAA 59.330 37.037 0.00 0.00 32.76 2.24
1898 1934 7.175797 AGATACATCCATATCCGAGACAAGTA 58.824 38.462 0.00 0.00 32.76 2.24
1899 1935 6.013379 AGATACATCCATATCCGAGACAAGT 58.987 40.000 0.00 0.00 32.76 3.16
1900 1936 6.522625 AGATACATCCATATCCGAGACAAG 57.477 41.667 0.00 0.00 32.76 3.16
1901 1937 7.402862 TCTAGATACATCCATATCCGAGACAA 58.597 38.462 0.00 0.00 32.76 3.18
1902 1938 6.958767 TCTAGATACATCCATATCCGAGACA 58.041 40.000 0.00 0.00 32.76 3.41
1903 1939 7.554835 AGTTCTAGATACATCCATATCCGAGAC 59.445 40.741 0.00 0.00 32.76 3.36
1904 1940 7.634718 AGTTCTAGATACATCCATATCCGAGA 58.365 38.462 0.00 0.00 32.76 4.04
1905 1941 7.873719 AGTTCTAGATACATCCATATCCGAG 57.126 40.000 0.00 0.00 32.76 4.63
1906 1942 9.749340 TTTAGTTCTAGATACATCCATATCCGA 57.251 33.333 0.00 0.00 32.76 4.55
1933 1969 9.755804 CGCAGAAATGGATGTATATAGATGTAT 57.244 33.333 0.00 0.00 0.00 2.29
1934 1970 8.966868 TCGCAGAAATGGATGTATATAGATGTA 58.033 33.333 0.00 0.00 0.00 2.29
1935 1971 7.761704 GTCGCAGAAATGGATGTATATAGATGT 59.238 37.037 0.00 0.00 39.69 3.06
1936 1972 7.761249 TGTCGCAGAAATGGATGTATATAGATG 59.239 37.037 0.00 0.00 39.69 2.90
1937 1973 7.840931 TGTCGCAGAAATGGATGTATATAGAT 58.159 34.615 0.00 0.00 39.69 1.98
1938 1974 7.227049 TGTCGCAGAAATGGATGTATATAGA 57.773 36.000 0.00 0.00 39.69 1.98
1939 1975 7.600375 ACTTGTCGCAGAAATGGATGTATATAG 59.400 37.037 0.00 0.00 39.69 1.31
1940 1976 7.441836 ACTTGTCGCAGAAATGGATGTATATA 58.558 34.615 0.00 0.00 39.69 0.86
1941 1977 6.291377 ACTTGTCGCAGAAATGGATGTATAT 58.709 36.000 0.00 0.00 39.69 0.86
1942 1978 5.670485 ACTTGTCGCAGAAATGGATGTATA 58.330 37.500 0.00 0.00 39.69 1.47
1943 1979 4.517285 ACTTGTCGCAGAAATGGATGTAT 58.483 39.130 0.00 0.00 39.69 2.29
1944 1980 3.937814 ACTTGTCGCAGAAATGGATGTA 58.062 40.909 0.00 0.00 39.69 2.29
1945 1981 2.783135 ACTTGTCGCAGAAATGGATGT 58.217 42.857 0.00 0.00 39.69 3.06
1946 1982 4.944962 TTACTTGTCGCAGAAATGGATG 57.055 40.909 0.00 0.00 39.69 3.51
1947 1983 5.066505 GGAATTACTTGTCGCAGAAATGGAT 59.933 40.000 0.00 0.00 39.69 3.41
1948 1984 4.394920 GGAATTACTTGTCGCAGAAATGGA 59.605 41.667 0.00 0.00 39.69 3.41
1949 1985 4.662145 GGAATTACTTGTCGCAGAAATGG 58.338 43.478 0.00 0.00 39.69 3.16
1950 1986 4.092821 TCGGAATTACTTGTCGCAGAAATG 59.907 41.667 0.00 0.00 39.69 2.32
1951 1987 4.250464 TCGGAATTACTTGTCGCAGAAAT 58.750 39.130 0.00 0.00 39.69 2.17
1952 1988 3.655486 TCGGAATTACTTGTCGCAGAAA 58.345 40.909 0.00 0.00 39.69 2.52
1953 1989 3.306917 TCGGAATTACTTGTCGCAGAA 57.693 42.857 0.00 0.00 39.69 3.02
1954 1990 2.991190 GTTCGGAATTACTTGTCGCAGA 59.009 45.455 0.00 0.00 0.00 4.26
1955 1991 2.222508 CGTTCGGAATTACTTGTCGCAG 60.223 50.000 0.00 0.00 0.00 5.18
1956 1992 1.722464 CGTTCGGAATTACTTGTCGCA 59.278 47.619 0.00 0.00 0.00 5.10
1957 1993 1.060122 CCGTTCGGAATTACTTGTCGC 59.940 52.381 5.19 0.00 0.00 5.19
1958 1994 2.597305 CTCCGTTCGGAATTACTTGTCG 59.403 50.000 14.79 0.00 33.41 4.35
1959 1995 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
1960 1996 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
1961 1997 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
1962 1998 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
1963 1999 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
1964 2000 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
1965 2001 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
1966 2002 1.479730 GTACTCCCTCCGTTCGGAATT 59.520 52.381 14.79 0.00 33.41 2.17
1967 2003 1.109609 GTACTCCCTCCGTTCGGAAT 58.890 55.000 14.79 2.09 33.41 3.01
1968 2004 0.251297 TGTACTCCCTCCGTTCGGAA 60.251 55.000 14.79 0.04 33.41 4.30
1969 2005 0.251297 TTGTACTCCCTCCGTTCGGA 60.251 55.000 13.34 13.34 0.00 4.55
1970 2006 0.604578 TTTGTACTCCCTCCGTTCGG 59.395 55.000 4.74 4.74 0.00 4.30
1971 2007 2.064014 GTTTTGTACTCCCTCCGTTCG 58.936 52.381 0.00 0.00 0.00 3.95
1972 2008 2.224354 TGGTTTTGTACTCCCTCCGTTC 60.224 50.000 0.00 0.00 0.00 3.95
1973 2009 1.770061 TGGTTTTGTACTCCCTCCGTT 59.230 47.619 0.00 0.00 0.00 4.44
1974 2010 1.426751 TGGTTTTGTACTCCCTCCGT 58.573 50.000 0.00 0.00 0.00 4.69
1975 2011 2.027561 TCATGGTTTTGTACTCCCTCCG 60.028 50.000 0.00 0.00 0.00 4.63
1976 2012 3.713826 TCATGGTTTTGTACTCCCTCC 57.286 47.619 0.00 0.00 0.00 4.30
1977 2013 3.947834 CCATCATGGTTTTGTACTCCCTC 59.052 47.826 0.00 0.00 31.35 4.30
1978 2014 3.591527 TCCATCATGGTTTTGTACTCCCT 59.408 43.478 2.79 0.00 39.03 4.20
1979 2015 3.694566 GTCCATCATGGTTTTGTACTCCC 59.305 47.826 2.79 0.00 39.03 4.30
1980 2016 3.374058 CGTCCATCATGGTTTTGTACTCC 59.626 47.826 2.79 0.00 39.03 3.85
1981 2017 4.250464 TCGTCCATCATGGTTTTGTACTC 58.750 43.478 2.79 0.00 39.03 2.59
1982 2018 4.253685 CTCGTCCATCATGGTTTTGTACT 58.746 43.478 2.79 0.00 39.03 2.73
1983 2019 3.374058 CCTCGTCCATCATGGTTTTGTAC 59.626 47.826 2.79 0.00 39.03 2.90
1984 2020 3.008594 ACCTCGTCCATCATGGTTTTGTA 59.991 43.478 2.79 0.00 39.03 2.41
1985 2021 2.224769 ACCTCGTCCATCATGGTTTTGT 60.225 45.455 2.79 0.00 39.03 2.83
1986 2022 2.162208 CACCTCGTCCATCATGGTTTTG 59.838 50.000 2.79 0.00 39.03 2.44
2013 2049 3.942130 AAAAGGCATAACTCTGGCAAC 57.058 42.857 0.40 0.00 43.73 4.17
2018 2054 7.335422 ACAAGAGACATAAAAGGCATAACTCTG 59.665 37.037 0.00 0.00 33.46 3.35
2053 2089 2.505407 ACTAGGCTCATGTATGCACCAA 59.495 45.455 0.00 0.00 0.00 3.67
2073 2109 0.879090 CCTAAGGGGTTGCACGAAAC 59.121 55.000 0.00 0.00 0.00 2.78
2103 2139 7.335422 CAGCTCTTTCTAGCCTTAATTTCTTCA 59.665 37.037 0.00 0.00 43.86 3.02
2128 2164 4.564821 GCTCACTGTTAACTGGAATACCCA 60.565 45.833 15.84 0.00 44.25 4.51
2152 2188 6.449635 TTGGTGGATGCTGTTTTATATGTC 57.550 37.500 0.00 0.00 0.00 3.06
2233 2281 6.779860 AGGGAGTACAAACTTTGTATGTCAT 58.220 36.000 15.76 7.47 46.73 3.06
2256 2304 2.289444 TGCAGAGTAAAAAGGACCGGAG 60.289 50.000 9.46 0.00 0.00 4.63
2257 2305 1.695242 TGCAGAGTAAAAAGGACCGGA 59.305 47.619 9.46 0.00 0.00 5.14
2258 2306 2.178912 TGCAGAGTAAAAAGGACCGG 57.821 50.000 0.00 0.00 0.00 5.28
2259 2307 6.984474 TCTAATATGCAGAGTAAAAAGGACCG 59.016 38.462 0.00 0.00 0.00 4.79
2260 2308 8.732746 TTCTAATATGCAGAGTAAAAAGGACC 57.267 34.615 0.00 0.00 0.00 4.46
2270 2318 8.703743 ACTTCAGAGAATTCTAATATGCAGAGT 58.296 33.333 8.25 7.29 30.73 3.24
2271 2319 9.195411 GACTTCAGAGAATTCTAATATGCAGAG 57.805 37.037 8.25 6.79 30.73 3.35
2272 2320 8.699130 TGACTTCAGAGAATTCTAATATGCAGA 58.301 33.333 8.25 0.00 30.73 4.26
2273 2321 8.883954 TGACTTCAGAGAATTCTAATATGCAG 57.116 34.615 8.25 7.58 30.73 4.41
2274 2322 9.671279 TTTGACTTCAGAGAATTCTAATATGCA 57.329 29.630 8.25 0.00 30.73 3.96
2275 2323 9.928236 GTTTGACTTCAGAGAATTCTAATATGC 57.072 33.333 8.25 0.00 30.73 3.14
2303 2351 9.438228 TCATATAAATACGGTCAAACTTTGTGA 57.562 29.630 1.44 0.00 0.00 3.58
2326 2374 9.309516 GCATGACAGATGTTGATTATTTTTCAT 57.690 29.630 0.00 0.00 0.00 2.57
2327 2375 8.525316 AGCATGACAGATGTTGATTATTTTTCA 58.475 29.630 0.00 0.00 0.00 2.69
2328 2376 8.922058 AGCATGACAGATGTTGATTATTTTTC 57.078 30.769 0.00 0.00 0.00 2.29
2332 2380 9.182214 ACTTTAGCATGACAGATGTTGATTATT 57.818 29.630 0.00 0.00 0.00 1.40
2333 2381 8.743085 ACTTTAGCATGACAGATGTTGATTAT 57.257 30.769 0.00 0.00 0.00 1.28
2334 2382 8.565896 AACTTTAGCATGACAGATGTTGATTA 57.434 30.769 0.00 0.00 0.00 1.75
2335 2383 7.458409 AACTTTAGCATGACAGATGTTGATT 57.542 32.000 0.00 0.00 0.00 2.57
2336 2384 8.743085 ATAACTTTAGCATGACAGATGTTGAT 57.257 30.769 0.00 0.00 0.00 2.57
2337 2385 9.098355 GTATAACTTTAGCATGACAGATGTTGA 57.902 33.333 0.00 0.00 0.00 3.18
2338 2386 8.882736 TGTATAACTTTAGCATGACAGATGTTG 58.117 33.333 0.00 0.00 0.00 3.33
2339 2387 9.448438 TTGTATAACTTTAGCATGACAGATGTT 57.552 29.630 0.00 0.00 0.00 2.71
2340 2388 9.618890 ATTGTATAACTTTAGCATGACAGATGT 57.381 29.630 0.00 0.00 0.00 3.06
2366 2414 9.725019 AGATGTGTCATGACTTAAAGTTTCATA 57.275 29.630 25.55 1.27 0.00 2.15
2367 2415 8.627208 AGATGTGTCATGACTTAAAGTTTCAT 57.373 30.769 25.55 14.42 0.00 2.57
2368 2416 9.725019 ATAGATGTGTCATGACTTAAAGTTTCA 57.275 29.630 25.55 11.05 0.00 2.69
2371 2419 9.725019 TCAATAGATGTGTCATGACTTAAAGTT 57.275 29.630 25.55 10.34 0.00 2.66
2372 2420 9.896645 ATCAATAGATGTGTCATGACTTAAAGT 57.103 29.630 25.55 9.39 31.91 2.66
2397 2445 9.811995 CCAACATTCACAATCTGAAATCAATAT 57.188 29.630 0.00 0.00 42.37 1.28
2398 2446 8.805175 ACCAACATTCACAATCTGAAATCAATA 58.195 29.630 0.00 0.00 42.37 1.90
2399 2447 7.673180 ACCAACATTCACAATCTGAAATCAAT 58.327 30.769 0.00 0.00 42.37 2.57
2400 2448 7.053316 ACCAACATTCACAATCTGAAATCAA 57.947 32.000 0.00 0.00 42.37 2.57
2401 2449 6.653526 ACCAACATTCACAATCTGAAATCA 57.346 33.333 0.00 0.00 42.37 2.57
2402 2450 7.820648 AGTACCAACATTCACAATCTGAAATC 58.179 34.615 0.00 0.00 42.37 2.17
2403 2451 7.765695 AGTACCAACATTCACAATCTGAAAT 57.234 32.000 0.00 0.00 42.37 2.17
2404 2452 7.581213 AAGTACCAACATTCACAATCTGAAA 57.419 32.000 0.00 0.00 42.37 2.69
2405 2453 7.581213 AAAGTACCAACATTCACAATCTGAA 57.419 32.000 0.00 0.00 43.28 3.02
2406 2454 7.581213 AAAAGTACCAACATTCACAATCTGA 57.419 32.000 0.00 0.00 0.00 3.27
2440 2488 2.876550 AGCCTCGTAAAGTTTGACCAAC 59.123 45.455 0.00 0.00 35.32 3.77
2441 2489 3.135994 GAGCCTCGTAAAGTTTGACCAA 58.864 45.455 0.00 0.00 0.00 3.67
2442 2490 2.762745 GAGCCTCGTAAAGTTTGACCA 58.237 47.619 0.00 0.00 0.00 4.02
2443 2491 1.725164 CGAGCCTCGTAAAGTTTGACC 59.275 52.381 5.82 0.00 34.72 4.02
2444 2492 2.407696 GTCGAGCCTCGTAAAGTTTGAC 59.592 50.000 14.64 0.00 41.35 3.18
2445 2493 2.295349 AGTCGAGCCTCGTAAAGTTTGA 59.705 45.455 14.64 0.00 41.35 2.69
2446 2494 2.673833 AGTCGAGCCTCGTAAAGTTTG 58.326 47.619 14.64 0.00 41.35 2.93
2447 2495 3.243636 TGAAGTCGAGCCTCGTAAAGTTT 60.244 43.478 14.64 1.19 41.35 2.66
2448 2496 2.295349 TGAAGTCGAGCCTCGTAAAGTT 59.705 45.455 14.64 4.03 41.35 2.66
2449 2497 1.884579 TGAAGTCGAGCCTCGTAAAGT 59.115 47.619 14.64 0.00 41.35 2.66
2450 2498 2.095161 ACTGAAGTCGAGCCTCGTAAAG 60.095 50.000 14.64 8.44 41.35 1.85
2451 2499 1.884579 ACTGAAGTCGAGCCTCGTAAA 59.115 47.619 14.64 0.00 41.35 2.01
2452 2500 1.467734 GACTGAAGTCGAGCCTCGTAA 59.532 52.381 14.64 0.00 41.35 3.18
2453 2501 1.085091 GACTGAAGTCGAGCCTCGTA 58.915 55.000 14.64 0.00 41.35 3.43
2454 2502 1.877367 GACTGAAGTCGAGCCTCGT 59.123 57.895 14.64 0.00 41.35 4.18
2455 2503 4.775746 GACTGAAGTCGAGCCTCG 57.224 61.111 8.05 8.05 42.10 4.63
2463 2511 7.700322 TCGCATATAAGATTTGACTGAAGTC 57.300 36.000 3.41 3.41 44.97 3.01
2464 2512 7.766278 AGTTCGCATATAAGATTTGACTGAAGT 59.234 33.333 0.00 0.00 0.00 3.01
2465 2513 8.136057 AGTTCGCATATAAGATTTGACTGAAG 57.864 34.615 0.00 0.00 0.00 3.02
2466 2514 9.594478 TTAGTTCGCATATAAGATTTGACTGAA 57.406 29.630 0.00 0.00 0.00 3.02
2467 2515 9.594478 TTTAGTTCGCATATAAGATTTGACTGA 57.406 29.630 0.00 0.00 0.00 3.41
2474 2522 8.837389 GGTCCTTTTTAGTTCGCATATAAGATT 58.163 33.333 0.00 0.00 0.00 2.40
2475 2523 7.170998 CGGTCCTTTTTAGTTCGCATATAAGAT 59.829 37.037 0.00 0.00 0.00 2.40
2476 2524 6.477688 CGGTCCTTTTTAGTTCGCATATAAGA 59.522 38.462 0.00 0.00 0.00 2.10
2477 2525 6.292703 CCGGTCCTTTTTAGTTCGCATATAAG 60.293 42.308 0.00 0.00 0.00 1.73
2478 2526 5.524646 CCGGTCCTTTTTAGTTCGCATATAA 59.475 40.000 0.00 0.00 0.00 0.98
2479 2527 5.051816 CCGGTCCTTTTTAGTTCGCATATA 58.948 41.667 0.00 0.00 0.00 0.86
2480 2528 3.875134 CCGGTCCTTTTTAGTTCGCATAT 59.125 43.478 0.00 0.00 0.00 1.78
2481 2529 3.055963 TCCGGTCCTTTTTAGTTCGCATA 60.056 43.478 0.00 0.00 0.00 3.14
2482 2530 2.081462 CCGGTCCTTTTTAGTTCGCAT 58.919 47.619 0.00 0.00 0.00 4.73
2483 2531 1.070445 TCCGGTCCTTTTTAGTTCGCA 59.930 47.619 0.00 0.00 0.00 5.10
2484 2532 1.730612 CTCCGGTCCTTTTTAGTTCGC 59.269 52.381 0.00 0.00 0.00 4.70
2485 2533 2.344025 CCTCCGGTCCTTTTTAGTTCG 58.656 52.381 0.00 0.00 0.00 3.95
2486 2534 2.303890 TCCCTCCGGTCCTTTTTAGTTC 59.696 50.000 0.00 0.00 0.00 3.01
2487 2535 2.305052 CTCCCTCCGGTCCTTTTTAGTT 59.695 50.000 0.00 0.00 0.00 2.24
2488 2536 1.907255 CTCCCTCCGGTCCTTTTTAGT 59.093 52.381 0.00 0.00 0.00 2.24
2489 2537 1.907255 ACTCCCTCCGGTCCTTTTTAG 59.093 52.381 0.00 0.00 0.00 1.85
2490 2538 2.034436 ACTCCCTCCGGTCCTTTTTA 57.966 50.000 0.00 0.00 0.00 1.52
2491 2539 2.034436 TACTCCCTCCGGTCCTTTTT 57.966 50.000 0.00 0.00 0.00 1.94
2492 2540 2.265526 ATACTCCCTCCGGTCCTTTT 57.734 50.000 0.00 0.00 0.00 2.27
2493 2541 3.036819 GTTATACTCCCTCCGGTCCTTT 58.963 50.000 0.00 0.00 0.00 3.11
2494 2542 2.023695 TGTTATACTCCCTCCGGTCCTT 60.024 50.000 0.00 0.00 0.00 3.36
2495 2543 1.572415 TGTTATACTCCCTCCGGTCCT 59.428 52.381 0.00 0.00 0.00 3.85
2496 2544 1.962100 CTGTTATACTCCCTCCGGTCC 59.038 57.143 0.00 0.00 0.00 4.46
2497 2545 2.941480 TCTGTTATACTCCCTCCGGTC 58.059 52.381 0.00 0.00 0.00 4.79
2498 2546 3.117246 TGATCTGTTATACTCCCTCCGGT 60.117 47.826 0.00 0.00 0.00 5.28
2499 2547 3.497332 TGATCTGTTATACTCCCTCCGG 58.503 50.000 0.00 0.00 0.00 5.14
2500 2548 5.013547 AGATGATCTGTTATACTCCCTCCG 58.986 45.833 0.00 0.00 0.00 4.63
2501 2549 6.926630 AAGATGATCTGTTATACTCCCTCC 57.073 41.667 0.00 0.00 0.00 4.30
2603 2652 6.361768 AAACAAGTTAACCAAAAGGAACCA 57.638 33.333 0.88 0.00 0.00 3.67
2640 2689 2.366916 AGAAGAATCAGGTGATAGCCCG 59.633 50.000 0.00 0.00 33.73 6.13
2651 2700 1.938577 CATGGCGGTCAGAAGAATCAG 59.061 52.381 0.00 0.00 0.00 2.90
2659 2708 2.662596 GTGGACATGGCGGTCAGA 59.337 61.111 10.66 0.00 39.59 3.27
2681 2730 1.729586 AGACTGTTAGGGGAGCAACA 58.270 50.000 0.00 0.00 33.76 3.33
2698 2747 5.073144 ACATTGTTGAAGGAAGGGAGTTAGA 59.927 40.000 0.00 0.00 0.00 2.10
2716 2765 0.675633 GCAGCAACAGGGAACATTGT 59.324 50.000 0.00 0.00 32.81 2.71
2741 2790 7.598493 TGCTGGTGCTTTCTACAAATAATTTTC 59.402 33.333 0.00 0.00 40.48 2.29
2784 2833 2.912956 AGCAAGATGGTCACTTAAGGGA 59.087 45.455 2.41 2.41 0.00 4.20
2986 3035 5.923204 ACTTGGTTGCATGGTTCATTAAAA 58.077 33.333 0.00 0.00 0.00 1.52
3081 3131 3.429492 TGTGTAAGTGGTACATCCGGTA 58.571 45.455 0.00 0.00 44.52 4.02
3099 3149 6.127730 ACAAGGGTACTTCAAAACTTCTTGTG 60.128 38.462 0.00 0.00 37.96 3.33
3158 3208 9.649167 TTAAGACCACAAGCTTAACTATACTTC 57.351 33.333 0.00 0.00 33.12 3.01
3168 3218 6.708949 CCTACAAGTTTAAGACCACAAGCTTA 59.291 38.462 0.00 0.00 0.00 3.09
3213 3263 4.548991 AGAACGCTCGTCGAATACTTAT 57.451 40.909 0.00 0.00 41.67 1.73
3230 3280 4.672413 GCAATGCTCGCATTACATAAGAAC 59.328 41.667 15.94 0.00 43.92 3.01
3264 3314 5.163581 GCACAATTATGATGGCTGAACTTCT 60.164 40.000 0.00 0.00 0.00 2.85
3277 3327 9.624697 GAGTTGAATTAAGTTGCACAATTATGA 57.375 29.630 0.00 0.00 0.00 2.15
3302 3352 2.108075 TGGAGATGAAACAAGGCAAGGA 59.892 45.455 0.00 0.00 0.00 3.36
3329 3380 5.883115 TCAATTACGCATGGTTTAATCAGGA 59.117 36.000 0.00 0.00 0.00 3.86
3342 3393 3.440173 CCAGAACAAGGTCAATTACGCAT 59.560 43.478 0.00 0.00 0.00 4.73
3405 3457 2.303175 TGGCCAACAAGAACCTGTAAC 58.697 47.619 0.61 0.00 0.00 2.50
3498 3550 1.122227 AGAGGCCTGCAAGAGATCTC 58.878 55.000 12.00 15.29 34.07 2.75
3606 3658 2.115910 CCCAAAGCTGGCAGACCA 59.884 61.111 20.86 0.00 46.51 4.02
3612 3664 1.075659 AAGAGGTCCCAAAGCTGGC 59.924 57.895 0.00 0.00 41.99 4.85
3687 3739 9.524106 CAACATACAACACCGTATTATTCTCTA 57.476 33.333 0.00 0.00 29.45 2.43
3743 3795 8.069574 TGCATGATAAAGCAAAATATACGTCAG 58.930 33.333 0.00 0.00 37.90 3.51
3744 3796 7.924940 TGCATGATAAAGCAAAATATACGTCA 58.075 30.769 0.00 0.00 37.90 4.35
3748 3800 9.956720 AGAACTGCATGATAAAGCAAAATATAC 57.043 29.630 0.00 0.00 40.73 1.47
3759 3811 8.565896 ACAACAGAATAGAACTGCATGATAAA 57.434 30.769 0.00 0.00 38.74 1.40
3866 3918 1.935873 TGCAGTATCTCATTGCGCTTC 59.064 47.619 9.73 0.00 42.56 3.86
4065 4117 5.548406 CAACTACTTGGCCTAACAGTTACT 58.452 41.667 3.32 0.00 0.00 2.24
4077 4129 1.884235 ACTGTCAGCAACTACTTGGC 58.116 50.000 0.00 0.00 0.00 4.52
4213 4265 9.484806 TGCTATTCATGATCCTCTTATCAGATA 57.515 33.333 0.00 0.00 39.18 1.98
4248 4300 7.082602 GCATTATAATCAGTCCAGCAAATCAG 58.917 38.462 0.00 0.00 0.00 2.90
4279 4331 6.939730 TGGTATTATGGTGGTATAACATGCTG 59.060 38.462 0.00 0.00 0.00 4.41
4280 4332 7.085476 TGGTATTATGGTGGTATAACATGCT 57.915 36.000 0.00 0.00 0.00 3.79
4282 4334 8.918202 AACTGGTATTATGGTGGTATAACATG 57.082 34.615 0.00 0.00 0.00 3.21
4407 4459 8.462016 CAACAGATTTATTTTCCGAAGATCCTT 58.538 33.333 0.00 0.00 0.00 3.36
4417 4469 7.035612 CAGGTAAGCCAACAGATTTATTTTCC 58.964 38.462 0.00 0.00 37.19 3.13
4463 4515 6.549364 ACATGGAAGTTTAACTCAATGGTTCA 59.451 34.615 14.64 0.00 0.00 3.18
4487 4541 6.202516 TGAATTCGTTGGATATGGGAAAAC 57.797 37.500 0.04 0.00 0.00 2.43
4489 4543 6.833416 AGAATGAATTCGTTGGATATGGGAAA 59.167 34.615 17.54 0.00 41.56 3.13
4495 4549 8.980481 AAACCTAGAATGAATTCGTTGGATAT 57.020 30.769 17.54 3.31 41.56 1.63
4503 4557 7.816640 TGGAAAAGAAACCTAGAATGAATTCG 58.183 34.615 0.04 0.00 41.56 3.34
4517 4571 4.935205 ACACAAAAAGGCTGGAAAAGAAAC 59.065 37.500 0.00 0.00 0.00 2.78
4525 4579 1.214175 TGGAGACACAAAAAGGCTGGA 59.786 47.619 0.00 0.00 33.40 3.86
4572 4626 3.562973 CGGCATCAGATTAAGCTTCATGT 59.437 43.478 0.00 0.00 0.00 3.21
4573 4627 3.811497 TCGGCATCAGATTAAGCTTCATG 59.189 43.478 0.00 0.00 0.00 3.07
4787 4889 8.469309 AATGTATGCTTTAGACCTATGCAATT 57.531 30.769 0.00 3.83 37.20 2.32
4843 4945 9.627123 TGTGGATAAATAAAGATTCCTGGTAAG 57.373 33.333 0.00 0.00 0.00 2.34
4866 4968 7.395190 TCAGAGGTGGAAATTTATTGATGTG 57.605 36.000 0.00 0.00 0.00 3.21
4885 4988 9.388506 ACCTAATTCACAAACTATGAATCAGAG 57.611 33.333 3.00 3.00 44.24 3.35
4972 5075 2.538861 CACTGCATGAGCTACATCTTCG 59.461 50.000 0.00 0.00 42.74 3.79
5035 5138 3.907894 TCCAAAAGACGTTGGTAATGC 57.092 42.857 4.00 0.00 46.93 3.56
5298 5401 4.290155 GGTTGTTGTACAATGTTCTGCTG 58.710 43.478 12.26 0.00 40.59 4.41
5306 5409 3.701241 AGTTTGCGGTTGTTGTACAATG 58.299 40.909 12.26 1.42 40.59 2.82
5312 5415 0.100503 GCTGAGTTTGCGGTTGTTGT 59.899 50.000 0.00 0.00 0.00 3.32
5328 5431 4.888326 AGATAGAGGAATGCTAAGGCTG 57.112 45.455 0.00 0.00 39.59 4.85
5374 5477 6.894339 AACAGAAAAATACCAATTCCGAGT 57.106 33.333 0.00 0.00 0.00 4.18
5376 5479 6.041069 ACCAAACAGAAAAATACCAATTCCGA 59.959 34.615 0.00 0.00 0.00 4.55
5533 5653 9.657419 CTAAAGATGCCCAAAACAGAAAATTAT 57.343 29.630 0.00 0.00 0.00 1.28
5535 5655 7.734942 TCTAAAGATGCCCAAAACAGAAAATT 58.265 30.769 0.00 0.00 0.00 1.82
5549 5669 3.543680 TGGCAGTACTCTAAAGATGCC 57.456 47.619 13.17 13.17 43.83 4.40
5580 5700 1.202891 AGGTTAGGCCACACAAGTTCC 60.203 52.381 5.01 0.00 40.61 3.62
5608 5728 6.891388 TCACCACCGGATTAAATAACACTAT 58.109 36.000 9.46 0.00 0.00 2.12
5624 5744 0.902531 ACCATAGGTCTTCACCACCG 59.097 55.000 0.00 0.00 46.68 4.94
5663 5783 8.439286 GCTAGATTGAGAAACAGTTACTTTCAG 58.561 37.037 0.00 0.00 31.12 3.02
5731 5851 7.715657 AGTACAAAGATTGACAAAGATGCAAA 58.284 30.769 0.00 0.00 0.00 3.68
5737 5857 7.913297 CGGAAAAAGTACAAAGATTGACAAAGA 59.087 33.333 0.00 0.00 0.00 2.52
5752 5872 8.031277 TCTACAAGATTAGGACGGAAAAAGTAC 58.969 37.037 0.00 0.00 0.00 2.73
5754 5874 7.001099 TCTACAAGATTAGGACGGAAAAAGT 57.999 36.000 0.00 0.00 0.00 2.66
5827 6061 1.135199 CAATGACAGCACATGCCCTTC 60.135 52.381 0.00 0.00 43.38 3.46
5845 6079 8.579850 AAGTTACCAATCAGAAGCATTATCAA 57.420 30.769 0.00 0.00 0.00 2.57
6125 6362 5.045872 GCATCTAAAATCAGCCAAATCCAC 58.954 41.667 0.00 0.00 0.00 4.02
6249 6486 7.905493 GCTCTACAATTTCACATAAGTTAGCAC 59.095 37.037 0.00 0.00 0.00 4.40
6340 6601 2.802816 CGAGAAAGAGAAATATGGCCGG 59.197 50.000 0.00 0.00 0.00 6.13
6443 6704 2.296752 TCGGATACAACTTTGTCGGTCA 59.703 45.455 0.00 0.00 42.35 4.02
6587 6848 1.130054 AGTGGCACATGGGTCAGAGT 61.130 55.000 21.41 0.00 44.52 3.24
6675 6936 2.484065 CGACCACACCCAACTAGTGAAA 60.484 50.000 0.00 0.00 38.63 2.69
6695 6956 6.307155 CACCTAAGAAACTTTTGCATAGTCG 58.693 40.000 2.81 0.00 0.00 4.18
6722 6984 1.463674 CCTACACCATTTGCCTGGAC 58.536 55.000 0.00 0.00 39.73 4.02
6737 6999 5.105064 TGGCGGATAAAGGATAATAGCCTAC 60.105 44.000 0.00 0.00 42.25 3.18
6741 7003 3.623510 GCTGGCGGATAAAGGATAATAGC 59.376 47.826 0.00 0.00 0.00 2.97
6790 7052 2.051345 GTTGCAACAGGAACGGCG 60.051 61.111 24.52 4.80 0.00 6.46
6838 7102 6.148811 TCAGAAAGATTCGGTTGTTATTGGAC 59.851 38.462 0.00 0.00 34.02 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.