Multiple sequence alignment - TraesCS4A01G132500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G132500 chr4A 100.000 5943 0 0 1 5943 178379274 178373332 0.000000e+00 10975
1 TraesCS4A01G132500 chr4D 93.199 2735 102 35 3235 5943 301951486 301954162 0.000000e+00 3943
2 TraesCS4A01G132500 chr4D 92.602 1122 52 21 943 2046 301948949 301950057 0.000000e+00 1583
3 TraesCS4A01G132500 chr4D 87.633 752 22 26 2450 3152 301950713 301951442 0.000000e+00 808
4 TraesCS4A01G132500 chr4D 88.215 577 28 17 374 930 301948330 301948886 0.000000e+00 652
5 TraesCS4A01G132500 chr4D 88.739 222 17 4 2038 2252 301950213 301950433 1.270000e-66 265
6 TraesCS4A01G132500 chr4D 86.977 215 5 12 2254 2450 301950469 301950678 2.790000e-53 220
7 TraesCS4A01G132500 chr4B 91.235 1198 72 27 3671 4862 376423769 376424939 0.000000e+00 1600
8 TraesCS4A01G132500 chr4B 92.000 500 14 10 935 1409 376420035 376420533 0.000000e+00 678
9 TraesCS4A01G132500 chr4B 82.707 798 70 30 204 945 376419207 376419992 0.000000e+00 647
10 TraesCS4A01G132500 chr4B 86.667 555 28 16 1568 2092 376421040 376421578 1.860000e-159 573
11 TraesCS4A01G132500 chr4B 91.014 434 22 6 5524 5943 376425325 376425755 2.400000e-158 569
12 TraesCS4A01G132500 chr4B 89.451 455 25 11 3235 3672 376423157 376423605 2.420000e-153 553
13 TraesCS4A01G132500 chr4B 91.749 303 12 5 2450 2749 376422180 376422472 5.540000e-110 409
14 TraesCS4A01G132500 chr4B 83.500 400 19 22 2774 3131 376422466 376422860 4.440000e-86 329
15 TraesCS4A01G132500 chr4B 86.695 233 13 9 2109 2323 376421665 376421897 5.950000e-60 243
16 TraesCS4A01G132500 chr4B 89.385 179 8 3 4914 5081 376424932 376425110 1.300000e-51 215
17 TraesCS4A01G132500 chr7A 85.380 171 19 2 1919 2089 729032614 729032450 7.920000e-39 172
18 TraesCS4A01G132500 chr7B 82.659 173 26 3 1919 2088 736099244 736099073 3.710000e-32 150
19 TraesCS4A01G132500 chr7B 83.537 164 21 2 1927 2090 739274851 739274694 1.330000e-31 148
20 TraesCS4A01G132500 chr7B 90.654 107 9 1 1984 2090 736144923 736144818 2.230000e-29 141


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G132500 chr4A 178373332 178379274 5942 True 10975.000000 10975 100.000000 1 5943 1 chr4A.!!$R1 5942
1 TraesCS4A01G132500 chr4D 301948330 301954162 5832 False 1245.166667 3943 89.560833 374 5943 6 chr4D.!!$F1 5569
2 TraesCS4A01G132500 chr4B 376419207 376425755 6548 False 581.600000 1600 88.440300 204 5943 10 chr4B.!!$F1 5739

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
169 170 0.037590 ACACACACCCACACACACTT 59.962 50.000 0.00 0.00 0.00 3.16 F
252 253 0.098025 ACAGACACCAAACAAACGCG 59.902 50.000 3.53 3.53 0.00 6.01 F
364 365 0.179200 GGTTTGCGTCGGTGCATTAG 60.179 55.000 3.38 0.00 45.78 1.73 F
452 480 0.240945 GCAACAAGACCATTCCACCG 59.759 55.000 0.00 0.00 0.00 4.94 F
899 967 0.910338 GACTCTACCACCTTTCCCCC 59.090 60.000 0.00 0.00 0.00 5.40 F
1494 1710 1.064803 CACCAAACAGTTTGCAGCGTA 59.935 47.619 19.19 0.00 39.31 4.42 F
2578 3561 0.255890 CATTCCATTCCTCCACCGGT 59.744 55.000 0.00 0.00 0.00 5.28 F
2579 3562 0.255890 ATTCCATTCCTCCACCGGTG 59.744 55.000 28.26 28.26 0.00 4.94 F
3203 4463 0.684153 CCGGGCAGGGTTCATTTCAT 60.684 55.000 0.00 0.00 35.97 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1972 2496 0.035458 GCGCCCAGCTCACCTAATAT 59.965 55.000 0.00 0.00 44.04 1.28 R
2049 2582 0.321919 GCATGTCCTCTCCTGCAACA 60.322 55.000 0.00 0.00 34.77 3.33 R
2252 3030 1.138661 TCGGATGATGCACATGCTGTA 59.861 47.619 15.01 0.00 43.57 2.74 R
2286 3099 3.436704 TGCATCAAGGACGAACAAGATTC 59.563 43.478 0.00 0.00 0.00 2.52 R
2483 3464 0.790207 ACTCTATGTTGCGTTGCGTG 59.210 50.000 0.00 0.00 0.00 5.34 R
3225 4485 0.393944 CTGGACCTGCATGCACTCAT 60.394 55.000 18.46 1.69 0.00 2.90 R
4110 5564 0.745845 CCAGTATCAGCCTGTGCACC 60.746 60.000 15.69 0.00 41.13 5.01 R
4128 5582 1.281899 CGCTTTCCTTGACGATCTCC 58.718 55.000 0.00 0.00 0.00 3.71 R
5120 6614 1.077169 TCTGGCACCTTCCTCTAGTCA 59.923 52.381 0.00 0.00 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.437897 CCACCTTGGCCTTGCTCT 59.562 61.111 3.32 0.00 0.00 4.09
18 19 1.228675 CCACCTTGGCCTTGCTCTT 60.229 57.895 3.32 0.00 0.00 2.85
19 20 1.246737 CCACCTTGGCCTTGCTCTTC 61.247 60.000 3.32 0.00 0.00 2.87
20 21 1.075659 ACCTTGGCCTTGCTCTTCC 59.924 57.895 3.32 0.00 0.00 3.46
21 22 1.680314 CCTTGGCCTTGCTCTTCCC 60.680 63.158 3.32 0.00 0.00 3.97
22 23 1.381851 CTTGGCCTTGCTCTTCCCT 59.618 57.895 3.32 0.00 0.00 4.20
23 24 0.251519 CTTGGCCTTGCTCTTCCCTT 60.252 55.000 3.32 0.00 0.00 3.95
24 25 0.188342 TTGGCCTTGCTCTTCCCTTT 59.812 50.000 3.32 0.00 0.00 3.11
25 26 0.540365 TGGCCTTGCTCTTCCCTTTG 60.540 55.000 3.32 0.00 0.00 2.77
26 27 1.588597 GCCTTGCTCTTCCCTTTGC 59.411 57.895 0.00 0.00 0.00 3.68
27 28 1.881903 GCCTTGCTCTTCCCTTTGCC 61.882 60.000 0.00 0.00 0.00 4.52
28 29 1.589716 CCTTGCTCTTCCCTTTGCCG 61.590 60.000 0.00 0.00 0.00 5.69
29 30 2.205243 CTTGCTCTTCCCTTTGCCGC 62.205 60.000 0.00 0.00 0.00 6.53
30 31 3.443925 GCTCTTCCCTTTGCCGCC 61.444 66.667 0.00 0.00 0.00 6.13
31 32 3.127533 CTCTTCCCTTTGCCGCCG 61.128 66.667 0.00 0.00 0.00 6.46
32 33 3.605749 CTCTTCCCTTTGCCGCCGA 62.606 63.158 0.00 0.00 0.00 5.54
33 34 2.671619 CTTCCCTTTGCCGCCGAA 60.672 61.111 0.00 0.00 0.00 4.30
34 35 2.671619 TTCCCTTTGCCGCCGAAG 60.672 61.111 0.00 0.00 33.06 3.79
35 36 3.185299 TTCCCTTTGCCGCCGAAGA 62.185 57.895 0.00 0.00 34.89 2.87
36 37 2.671619 CCCTTTGCCGCCGAAGAA 60.672 61.111 0.00 0.00 34.89 2.52
37 38 2.690778 CCCTTTGCCGCCGAAGAAG 61.691 63.158 0.00 0.00 34.89 2.85
38 39 2.176792 CTTTGCCGCCGAAGAAGC 59.823 61.111 0.00 0.00 34.89 3.86
39 40 2.593148 TTTGCCGCCGAAGAAGCA 60.593 55.556 0.00 0.00 0.00 3.91
40 41 2.786564 CTTTGCCGCCGAAGAAGCAC 62.787 60.000 0.00 0.00 34.89 4.40
41 42 4.617520 TGCCGCCGAAGAAGCACA 62.618 61.111 0.00 0.00 0.00 4.57
42 43 3.127533 GCCGCCGAAGAAGCACAT 61.128 61.111 0.00 0.00 0.00 3.21
43 44 2.787249 CCGCCGAAGAAGCACATG 59.213 61.111 0.00 0.00 0.00 3.21
44 45 2.753966 CCGCCGAAGAAGCACATGG 61.754 63.158 0.00 0.00 0.00 3.66
45 46 2.486966 GCCGAAGAAGCACATGGC 59.513 61.111 0.00 0.00 45.30 4.40
54 55 2.590007 GCACATGGCTCGGGCTAG 60.590 66.667 7.48 0.00 40.25 3.42
55 56 2.109799 CACATGGCTCGGGCTAGG 59.890 66.667 7.48 5.10 36.80 3.02
56 57 3.164269 ACATGGCTCGGGCTAGGG 61.164 66.667 10.81 1.44 35.10 3.53
57 58 3.164269 CATGGCTCGGGCTAGGGT 61.164 66.667 7.48 0.00 38.73 4.34
58 59 2.366972 ATGGCTCGGGCTAGGGTT 60.367 61.111 7.48 0.00 38.73 4.11
59 60 2.001269 ATGGCTCGGGCTAGGGTTT 61.001 57.895 7.48 0.00 38.73 3.27
60 61 1.984288 ATGGCTCGGGCTAGGGTTTC 61.984 60.000 7.48 0.00 38.73 2.78
61 62 2.189784 GCTCGGGCTAGGGTTTCC 59.810 66.667 0.00 0.00 35.22 3.13
62 63 2.368011 GCTCGGGCTAGGGTTTCCT 61.368 63.158 0.00 0.00 46.96 3.36
63 64 1.047034 GCTCGGGCTAGGGTTTCCTA 61.047 60.000 0.00 0.00 44.38 2.94
64 65 1.718280 CTCGGGCTAGGGTTTCCTAT 58.282 55.000 0.00 0.00 44.11 2.57
65 66 1.619332 CTCGGGCTAGGGTTTCCTATC 59.381 57.143 0.00 0.00 44.11 2.08
66 67 0.317479 CGGGCTAGGGTTTCCTATCG 59.683 60.000 0.00 0.00 44.11 2.92
67 68 1.421480 GGGCTAGGGTTTCCTATCGT 58.579 55.000 0.00 0.00 44.11 3.73
68 69 1.343789 GGGCTAGGGTTTCCTATCGTC 59.656 57.143 0.00 0.00 44.11 4.20
69 70 1.000496 GGCTAGGGTTTCCTATCGTCG 60.000 57.143 0.00 0.00 44.11 5.12
70 71 1.952296 GCTAGGGTTTCCTATCGTCGA 59.048 52.381 0.00 0.00 44.11 4.20
71 72 2.287487 GCTAGGGTTTCCTATCGTCGAC 60.287 54.545 5.18 5.18 44.11 4.20
72 73 1.843368 AGGGTTTCCTATCGTCGACA 58.157 50.000 17.16 3.13 42.75 4.35
73 74 2.385803 AGGGTTTCCTATCGTCGACAT 58.614 47.619 17.16 10.63 42.75 3.06
74 75 2.100916 AGGGTTTCCTATCGTCGACATG 59.899 50.000 17.16 0.00 42.75 3.21
75 76 2.470821 GGTTTCCTATCGTCGACATGG 58.529 52.381 17.16 11.10 0.00 3.66
76 77 2.100252 GGTTTCCTATCGTCGACATGGA 59.900 50.000 17.16 13.21 0.00 3.41
77 78 3.372954 GTTTCCTATCGTCGACATGGAG 58.627 50.000 17.16 6.57 0.00 3.86
78 79 1.605753 TCCTATCGTCGACATGGAGG 58.394 55.000 17.16 15.17 0.00 4.30
79 80 0.039074 CCTATCGTCGACATGGAGGC 60.039 60.000 17.16 0.00 0.00 4.70
86 87 4.192000 GACATGGAGGCGAGTGTG 57.808 61.111 0.00 0.00 0.00 3.82
87 88 1.591703 GACATGGAGGCGAGTGTGA 59.408 57.895 0.00 0.00 0.00 3.58
88 89 0.737715 GACATGGAGGCGAGTGTGAC 60.738 60.000 0.00 0.00 0.00 3.67
89 90 1.188219 ACATGGAGGCGAGTGTGACT 61.188 55.000 0.00 0.00 0.00 3.41
90 91 0.817654 CATGGAGGCGAGTGTGACTA 59.182 55.000 0.00 0.00 0.00 2.59
91 92 1.107114 ATGGAGGCGAGTGTGACTAG 58.893 55.000 0.00 0.00 0.00 2.57
92 93 0.037734 TGGAGGCGAGTGTGACTAGA 59.962 55.000 0.00 0.00 0.00 2.43
93 94 1.341089 TGGAGGCGAGTGTGACTAGAT 60.341 52.381 0.00 0.00 0.00 1.98
94 95 1.751924 GGAGGCGAGTGTGACTAGATT 59.248 52.381 0.00 0.00 0.00 2.40
95 96 2.166664 GGAGGCGAGTGTGACTAGATTT 59.833 50.000 0.00 0.00 0.00 2.17
96 97 3.182967 GAGGCGAGTGTGACTAGATTTG 58.817 50.000 0.00 0.00 0.00 2.32
97 98 1.661112 GGCGAGTGTGACTAGATTTGC 59.339 52.381 0.00 0.00 0.00 3.68
98 99 2.611518 GCGAGTGTGACTAGATTTGCT 58.388 47.619 0.00 0.00 0.00 3.91
99 100 3.428999 GGCGAGTGTGACTAGATTTGCTA 60.429 47.826 0.00 0.00 0.00 3.49
110 111 3.185246 AGATTTGCTAGATGTGGACGG 57.815 47.619 0.00 0.00 0.00 4.79
111 112 2.158900 AGATTTGCTAGATGTGGACGGG 60.159 50.000 0.00 0.00 0.00 5.28
112 113 0.251916 TTTGCTAGATGTGGACGGGG 59.748 55.000 0.00 0.00 0.00 5.73
113 114 0.616395 TTGCTAGATGTGGACGGGGA 60.616 55.000 0.00 0.00 0.00 4.81
114 115 0.616395 TGCTAGATGTGGACGGGGAA 60.616 55.000 0.00 0.00 0.00 3.97
115 116 0.105039 GCTAGATGTGGACGGGGAAG 59.895 60.000 0.00 0.00 0.00 3.46
116 117 1.486211 CTAGATGTGGACGGGGAAGT 58.514 55.000 0.00 0.00 0.00 3.01
117 118 1.137086 CTAGATGTGGACGGGGAAGTG 59.863 57.143 0.00 0.00 0.00 3.16
118 119 1.078426 GATGTGGACGGGGAAGTGG 60.078 63.158 0.00 0.00 0.00 4.00
119 120 1.537889 ATGTGGACGGGGAAGTGGA 60.538 57.895 0.00 0.00 0.00 4.02
120 121 0.914417 ATGTGGACGGGGAAGTGGAT 60.914 55.000 0.00 0.00 0.00 3.41
121 122 1.221021 GTGGACGGGGAAGTGGATC 59.779 63.158 0.00 0.00 0.00 3.36
122 123 1.229368 TGGACGGGGAAGTGGATCA 60.229 57.895 0.00 0.00 0.00 2.92
123 124 1.221021 GGACGGGGAAGTGGATCAC 59.779 63.158 0.00 0.00 34.10 3.06
124 125 1.550130 GGACGGGGAAGTGGATCACA 61.550 60.000 0.00 0.00 36.74 3.58
132 133 2.998949 GTGGATCACACCCCCTCC 59.001 66.667 0.00 0.00 44.49 4.30
133 134 2.286121 TGGATCACACCCCCTCCC 60.286 66.667 0.00 0.00 0.00 4.30
134 135 3.097162 GGATCACACCCCCTCCCC 61.097 72.222 0.00 0.00 0.00 4.81
135 136 3.097162 GATCACACCCCCTCCCCC 61.097 72.222 0.00 0.00 0.00 5.40
157 158 4.675029 CCCCGGACCGACACACAC 62.675 72.222 17.49 0.00 0.00 3.82
158 159 4.675029 CCCGGACCGACACACACC 62.675 72.222 17.49 0.00 0.00 4.16
159 160 4.675029 CCGGACCGACACACACCC 62.675 72.222 17.49 0.00 0.00 4.61
160 161 3.918977 CGGACCGACACACACCCA 61.919 66.667 8.64 0.00 0.00 4.51
161 162 2.280592 GGACCGACACACACCCAC 60.281 66.667 0.00 0.00 0.00 4.61
162 163 2.502093 GACCGACACACACCCACA 59.498 61.111 0.00 0.00 0.00 4.17
163 164 1.885850 GACCGACACACACCCACAC 60.886 63.158 0.00 0.00 0.00 3.82
164 165 2.188207 CCGACACACACCCACACA 59.812 61.111 0.00 0.00 0.00 3.72
165 166 2.177580 CCGACACACACCCACACAC 61.178 63.158 0.00 0.00 0.00 3.82
166 167 1.448717 CGACACACACCCACACACA 60.449 57.895 0.00 0.00 0.00 3.72
167 168 1.701545 CGACACACACCCACACACAC 61.702 60.000 0.00 0.00 0.00 3.82
168 169 0.392461 GACACACACCCACACACACT 60.392 55.000 0.00 0.00 0.00 3.55
169 170 0.037590 ACACACACCCACACACACTT 59.962 50.000 0.00 0.00 0.00 3.16
170 171 0.451383 CACACACCCACACACACTTG 59.549 55.000 0.00 0.00 0.00 3.16
171 172 1.312371 ACACACCCACACACACTTGC 61.312 55.000 0.00 0.00 0.00 4.01
172 173 1.031571 CACACCCACACACACTTGCT 61.032 55.000 0.00 0.00 0.00 3.91
173 174 0.544223 ACACCCACACACACTTGCTA 59.456 50.000 0.00 0.00 0.00 3.49
174 175 1.142870 ACACCCACACACACTTGCTAT 59.857 47.619 0.00 0.00 0.00 2.97
175 176 2.229792 CACCCACACACACTTGCTATT 58.770 47.619 0.00 0.00 0.00 1.73
176 177 2.622942 CACCCACACACACTTGCTATTT 59.377 45.455 0.00 0.00 0.00 1.40
177 178 3.068024 CACCCACACACACTTGCTATTTT 59.932 43.478 0.00 0.00 0.00 1.82
178 179 4.277174 CACCCACACACACTTGCTATTTTA 59.723 41.667 0.00 0.00 0.00 1.52
179 180 4.890581 ACCCACACACACTTGCTATTTTAA 59.109 37.500 0.00 0.00 0.00 1.52
180 181 5.361285 ACCCACACACACTTGCTATTTTAAA 59.639 36.000 0.00 0.00 0.00 1.52
181 182 6.127310 ACCCACACACACTTGCTATTTTAAAA 60.127 34.615 2.51 2.51 0.00 1.52
182 183 6.758886 CCCACACACACTTGCTATTTTAAAAA 59.241 34.615 4.44 0.00 0.00 1.94
183 184 7.042791 CCCACACACACTTGCTATTTTAAAAAG 60.043 37.037 4.44 5.43 0.00 2.27
184 185 7.704472 CCACACACACTTGCTATTTTAAAAAGA 59.296 33.333 4.44 0.00 0.00 2.52
185 186 9.081997 CACACACACTTGCTATTTTAAAAAGAA 57.918 29.630 4.44 0.00 0.00 2.52
186 187 9.301153 ACACACACTTGCTATTTTAAAAAGAAG 57.699 29.630 4.44 7.24 0.00 2.85
187 188 9.301153 CACACACTTGCTATTTTAAAAAGAAGT 57.699 29.630 4.44 7.80 0.00 3.01
188 189 9.301153 ACACACTTGCTATTTTAAAAAGAAGTG 57.699 29.630 24.92 24.92 42.96 3.16
189 190 8.755018 CACACTTGCTATTTTAAAAAGAAGTGG 58.245 33.333 27.19 19.68 42.07 4.00
190 191 8.691797 ACACTTGCTATTTTAAAAAGAAGTGGA 58.308 29.630 27.19 10.10 42.07 4.02
191 192 8.968242 CACTTGCTATTTTAAAAAGAAGTGGAC 58.032 33.333 22.13 6.71 36.82 4.02
192 193 8.914011 ACTTGCTATTTTAAAAAGAAGTGGACT 58.086 29.630 4.44 0.00 0.00 3.85
193 194 9.750125 CTTGCTATTTTAAAAAGAAGTGGACTT 57.250 29.630 4.44 0.00 39.23 3.01
200 201 4.573162 GAAGTGGACTTCCCGACG 57.427 61.111 8.14 0.00 44.93 5.12
201 202 1.737008 GAAGTGGACTTCCCGACGC 60.737 63.158 8.14 0.00 44.93 5.19
202 203 2.156051 GAAGTGGACTTCCCGACGCT 62.156 60.000 8.14 0.00 44.93 5.07
235 236 3.858868 GACACGCGAGCCCAAGACA 62.859 63.158 15.93 0.00 0.00 3.41
242 243 1.754745 GAGCCCAAGACAGACACCA 59.245 57.895 0.00 0.00 0.00 4.17
244 245 0.550914 AGCCCAAGACAGACACCAAA 59.449 50.000 0.00 0.00 0.00 3.28
246 247 2.021723 GCCCAAGACAGACACCAAACA 61.022 52.381 0.00 0.00 0.00 2.83
247 248 2.374184 CCCAAGACAGACACCAAACAA 58.626 47.619 0.00 0.00 0.00 2.83
248 249 2.757868 CCCAAGACAGACACCAAACAAA 59.242 45.455 0.00 0.00 0.00 2.83
250 251 3.425404 CAAGACAGACACCAAACAAACG 58.575 45.455 0.00 0.00 0.00 3.60
252 253 0.098025 ACAGACACCAAACAAACGCG 59.902 50.000 3.53 3.53 0.00 6.01
256 257 4.916273 ACCAAACAAACGCGCGGC 62.916 61.111 35.22 0.00 0.00 6.53
274 275 4.034258 GCGTCCGTCTCGTGTCCA 62.034 66.667 0.00 0.00 0.00 4.02
293 294 3.587061 TCCATGTGGACACAAATAGGACT 59.413 43.478 9.42 0.00 45.41 3.85
302 303 8.573035 GTGGACACAAATAGGACTCAAATTTAA 58.427 33.333 0.00 0.00 0.00 1.52
304 305 8.793592 GGACACAAATAGGACTCAAATTTAAGT 58.206 33.333 0.00 0.00 0.00 2.24
334 335 0.870393 TCTAGACGAACAACGAGCGT 59.130 50.000 0.00 0.00 45.77 5.07
341 342 1.339946 GAACAACGAGCGTACGGGTC 61.340 60.000 18.39 11.53 39.80 4.46
357 358 1.890510 GTCTTGGGTTTGCGTCGGT 60.891 57.895 0.00 0.00 0.00 4.69
360 361 4.858680 TGGGTTTGCGTCGGTGCA 62.859 61.111 0.00 0.00 44.61 4.57
362 363 2.642700 GGTTTGCGTCGGTGCATT 59.357 55.556 3.38 0.00 45.78 3.56
363 364 1.579084 GGGTTTGCGTCGGTGCATTA 61.579 55.000 3.38 0.00 45.78 1.90
364 365 0.179200 GGTTTGCGTCGGTGCATTAG 60.179 55.000 3.38 0.00 45.78 1.73
365 366 0.793861 GTTTGCGTCGGTGCATTAGA 59.206 50.000 3.38 0.00 45.78 2.10
366 367 0.793861 TTTGCGTCGGTGCATTAGAC 59.206 50.000 3.38 8.51 45.78 2.59
367 368 1.017177 TTGCGTCGGTGCATTAGACC 61.017 55.000 11.71 0.00 45.78 3.85
372 373 4.904466 GGTGCATTAGACCGTCGT 57.096 55.556 0.00 0.00 0.00 4.34
375 398 1.011968 GTGCATTAGACCGTCGTGCA 61.012 55.000 18.90 18.90 42.86 4.57
393 416 1.377202 AGACCAAATGCATCGCCGT 60.377 52.632 0.00 0.00 0.00 5.68
411 434 0.872388 GTGTTGGAGTTGCCCTAACG 59.128 55.000 0.00 0.00 44.15 3.18
412 435 0.759959 TGTTGGAGTTGCCCTAACGA 59.240 50.000 0.00 0.00 44.15 3.85
413 436 1.270625 TGTTGGAGTTGCCCTAACGAG 60.271 52.381 0.00 0.00 44.15 4.18
441 469 2.515757 TGCCGTGCAGCAACAAGA 60.516 55.556 0.00 0.00 40.56 3.02
445 473 1.518056 CCGTGCAGCAACAAGACCAT 61.518 55.000 0.00 0.00 0.00 3.55
446 474 0.311790 CGTGCAGCAACAAGACCATT 59.688 50.000 0.00 0.00 0.00 3.16
447 475 1.664016 CGTGCAGCAACAAGACCATTC 60.664 52.381 0.00 0.00 0.00 2.67
448 476 0.961019 TGCAGCAACAAGACCATTCC 59.039 50.000 0.00 0.00 0.00 3.01
449 477 0.961019 GCAGCAACAAGACCATTCCA 59.039 50.000 0.00 0.00 0.00 3.53
452 480 0.240945 GCAACAAGACCATTCCACCG 59.759 55.000 0.00 0.00 0.00 4.94
453 481 1.890876 CAACAAGACCATTCCACCGA 58.109 50.000 0.00 0.00 0.00 4.69
454 482 1.806542 CAACAAGACCATTCCACCGAG 59.193 52.381 0.00 0.00 0.00 4.63
455 483 1.348064 ACAAGACCATTCCACCGAGA 58.652 50.000 0.00 0.00 0.00 4.04
456 484 1.276421 ACAAGACCATTCCACCGAGAG 59.724 52.381 0.00 0.00 0.00 3.20
622 650 1.132453 CATGCATGCCTGAACAGTGAG 59.868 52.381 17.08 0.00 0.00 3.51
665 693 3.247173 GCCGCAGATCAAAAGAGATACTG 59.753 47.826 0.00 0.00 0.00 2.74
705 733 3.243873 GCACCAAAAAGAAAGAAGGGGAG 60.244 47.826 0.00 0.00 0.00 4.30
711 745 8.177456 ACCAAAAAGAAAGAAGGGGAGTATATT 58.823 33.333 0.00 0.00 0.00 1.28
762 796 9.803315 AATAAAAAGAAAAGAAAAGAGAACGCT 57.197 25.926 0.00 0.00 0.00 5.07
765 805 4.369182 AGAAAAGAAAAGAGAACGCTCGA 58.631 39.130 0.00 0.00 45.98 4.04
767 807 6.157211 AGAAAAGAAAAGAGAACGCTCGATA 58.843 36.000 0.00 0.00 45.98 2.92
800 849 7.277981 CAGACAGTACACACTTTGGATATTACC 59.722 40.741 0.00 0.00 30.46 2.85
899 967 0.910338 GACTCTACCACCTTTCCCCC 59.090 60.000 0.00 0.00 0.00 5.40
918 986 2.359478 CTTGTTTCCCGTCCCCCG 60.359 66.667 0.00 0.00 0.00 5.73
936 1008 2.762327 CCCGTATAACACAGTACCACCT 59.238 50.000 0.00 0.00 0.00 4.00
937 1009 3.181483 CCCGTATAACACAGTACCACCTC 60.181 52.174 0.00 0.00 0.00 3.85
938 1010 3.698040 CCGTATAACACAGTACCACCTCT 59.302 47.826 0.00 0.00 0.00 3.69
940 1012 4.201990 CGTATAACACAGTACCACCTCTCC 60.202 50.000 0.00 0.00 0.00 3.71
941 1013 2.097110 AACACAGTACCACCTCTCCA 57.903 50.000 0.00 0.00 0.00 3.86
977 1104 3.900966 AGTGCATACAGAGATCAAGCA 57.099 42.857 0.00 0.00 0.00 3.91
1005 1144 8.956446 TTAGAGAGAGAGAGAGAGAGATGATA 57.044 38.462 0.00 0.00 0.00 2.15
1022 1161 2.044806 ATAGAGGTGGGCATGGCGAC 62.045 60.000 23.64 23.64 0.00 5.19
1191 1336 4.554036 GCCGACATGAGGGAGGCC 62.554 72.222 0.00 0.00 41.81 5.19
1298 1443 5.912149 TGGAGGAAAGAGCATGGTATATT 57.088 39.130 0.00 0.00 0.00 1.28
1401 1552 7.435068 TTGGCTTACTAATTTCTCAGTCAAC 57.565 36.000 0.00 0.00 0.00 3.18
1424 1604 5.874810 ACTTCTTTTCCCTGAAAAACAAAGC 59.125 36.000 3.85 0.00 40.34 3.51
1455 1639 2.693864 CTCACCCCTCATGCCCCT 60.694 66.667 0.00 0.00 0.00 4.79
1459 1643 3.411517 CCCCTCATGCCCCTCGTT 61.412 66.667 0.00 0.00 0.00 3.85
1469 1653 2.046314 CCCTCGTTTGGCATCGGT 60.046 61.111 11.44 0.00 0.00 4.69
1471 1655 2.452813 CCTCGTTTGGCATCGGTCG 61.453 63.158 11.44 2.81 0.00 4.79
1472 1656 2.433491 TCGTTTGGCATCGGTCGG 60.433 61.111 11.44 0.00 0.00 4.79
1473 1657 3.496131 CGTTTGGCATCGGTCGGG 61.496 66.667 0.00 0.00 0.00 5.14
1474 1658 3.810896 GTTTGGCATCGGTCGGGC 61.811 66.667 0.00 0.00 0.00 6.13
1494 1710 1.064803 CACCAAACAGTTTGCAGCGTA 59.935 47.619 19.19 0.00 39.31 4.42
1511 1727 3.810310 CGTAGCTCCCAAAGAAGAGAT 57.190 47.619 0.00 0.00 32.58 2.75
1520 1736 4.536090 TCCCAAAGAAGAGATGGAGCTTAA 59.464 41.667 0.00 0.00 36.27 1.85
1521 1737 5.192522 TCCCAAAGAAGAGATGGAGCTTAAT 59.807 40.000 0.00 0.00 36.27 1.40
1523 1739 7.056635 CCCAAAGAAGAGATGGAGCTTAATTA 58.943 38.462 0.00 0.00 36.27 1.40
1524 1740 7.723172 CCCAAAGAAGAGATGGAGCTTAATTAT 59.277 37.037 0.00 0.00 36.27 1.28
1525 1741 8.782144 CCAAAGAAGAGATGGAGCTTAATTATC 58.218 37.037 0.00 0.00 36.27 1.75
1526 1742 9.558396 CAAAGAAGAGATGGAGCTTAATTATCT 57.442 33.333 0.00 0.00 0.00 1.98
1595 2102 2.019984 CTAACAGAGCCCAAAGATGCC 58.980 52.381 0.00 0.00 0.00 4.40
1680 2192 6.265649 ACACTAAGCTGGTGTACTCCATATAG 59.734 42.308 19.81 18.25 44.72 1.31
1681 2193 6.265649 CACTAAGCTGGTGTACTCCATATAGT 59.734 42.308 16.68 18.76 36.84 2.12
1682 2194 7.447545 CACTAAGCTGGTGTACTCCATATAGTA 59.552 40.741 22.59 11.27 36.84 1.82
1761 2273 2.124151 ACCCGGCAATGATGAGGC 60.124 61.111 0.00 0.00 0.00 4.70
1762 2274 2.908940 CCCGGCAATGATGAGGCC 60.909 66.667 0.00 0.00 44.27 5.19
1770 2282 1.578215 AATGATGAGGCCCCAGCTGT 61.578 55.000 13.81 0.00 39.73 4.40
1788 2300 5.292101 CAGCTGTGCAGTAGGAGTATTAAAC 59.708 44.000 5.25 0.00 0.00 2.01
1906 2430 3.545574 TGGTGGTCTCGTGCTGCA 61.546 61.111 0.00 0.00 0.00 4.41
1945 2469 1.689984 TTCCTGTTGCTGCATGACAA 58.310 45.000 1.84 0.00 0.00 3.18
1959 2483 4.220163 TGCATGACAATGTTGGATAGCAAA 59.780 37.500 0.00 0.00 36.08 3.68
1963 2487 7.469043 GCATGACAATGTTGGATAGCAAAGATA 60.469 37.037 0.00 0.00 36.08 1.98
1967 2491 8.978874 ACAATGTTGGATAGCAAAGATACATA 57.021 30.769 0.00 0.00 0.00 2.29
1968 2492 8.840321 ACAATGTTGGATAGCAAAGATACATAC 58.160 33.333 0.00 0.00 0.00 2.39
1969 2493 7.986085 ATGTTGGATAGCAAAGATACATACC 57.014 36.000 0.00 0.00 0.00 2.73
1970 2494 6.894682 TGTTGGATAGCAAAGATACATACCA 58.105 36.000 0.00 0.00 0.00 3.25
1971 2495 7.517320 TGTTGGATAGCAAAGATACATACCAT 58.483 34.615 0.00 0.00 0.00 3.55
1972 2496 8.655901 TGTTGGATAGCAAAGATACATACCATA 58.344 33.333 0.00 0.00 0.00 2.74
2004 2537 4.487412 GGCGCCATCAGCTTGCAC 62.487 66.667 24.80 0.00 40.39 4.57
2015 2548 3.138304 TCAGCTTGCACGATTTAACTGT 58.862 40.909 0.00 0.00 0.00 3.55
2023 2556 3.918591 GCACGATTTAACTGTTCTCTCGA 59.081 43.478 18.88 0.00 0.00 4.04
2032 2565 1.295746 GTTCTCTCGAACCCACCCC 59.704 63.158 0.00 0.00 42.93 4.95
2046 2579 3.920841 ACCCACCCCTACTAAAACTGAAT 59.079 43.478 0.00 0.00 0.00 2.57
2049 2582 5.340027 CCCACCCCTACTAAAACTGAATGAT 60.340 44.000 0.00 0.00 0.00 2.45
2050 2583 5.590259 CCACCCCTACTAAAACTGAATGATG 59.410 44.000 0.00 0.00 0.00 3.07
2095 2792 3.682377 CCACAAAGAACAACAAACCCAAC 59.318 43.478 0.00 0.00 0.00 3.77
2171 2943 6.552629 CACGTAACTGTAGAGAGCTGAAATA 58.447 40.000 0.00 0.00 0.00 1.40
2172 2944 6.689241 CACGTAACTGTAGAGAGCTGAAATAG 59.311 42.308 0.00 0.00 0.00 1.73
2184 2956 5.184892 AGCTGAAATAGGTCAAGGTGATT 57.815 39.130 0.00 0.00 29.16 2.57
2191 2963 5.632034 ATAGGTCAAGGTGATTAACTCCC 57.368 43.478 0.00 0.00 33.10 4.30
2207 2985 7.658887 TTAACTCCCTGTAGATCCTATCCTA 57.341 40.000 0.00 0.00 0.00 2.94
2331 3261 4.017126 TGCATGTATAGATAGCGGCTAGT 58.983 43.478 15.78 7.77 0.00 2.57
2332 3262 5.190677 TGCATGTATAGATAGCGGCTAGTA 58.809 41.667 15.78 9.70 0.00 1.82
2333 3263 5.297029 TGCATGTATAGATAGCGGCTAGTAG 59.703 44.000 15.78 0.00 0.00 2.57
2351 3281 7.656137 GGCTAGTAGCTTGCAAGTAACAATATA 59.344 37.037 26.55 12.12 41.99 0.86
2352 3282 9.209175 GCTAGTAGCTTGCAAGTAACAATATAT 57.791 33.333 26.55 10.79 38.45 0.86
2416 3362 4.973168 TGGAAATGGATCGGATTAGAAGG 58.027 43.478 0.00 0.00 0.00 3.46
2417 3363 4.658435 TGGAAATGGATCGGATTAGAAGGA 59.342 41.667 0.00 0.00 0.00 3.36
2565 3548 1.001020 AGCAACGCCATCCATTCCA 60.001 52.632 0.00 0.00 0.00 3.53
2566 3549 0.396139 AGCAACGCCATCCATTCCAT 60.396 50.000 0.00 0.00 0.00 3.41
2567 3550 0.461135 GCAACGCCATCCATTCCATT 59.539 50.000 0.00 0.00 0.00 3.16
2568 3551 1.536709 GCAACGCCATCCATTCCATTC 60.537 52.381 0.00 0.00 0.00 2.67
2570 3553 0.552848 ACGCCATCCATTCCATTCCT 59.447 50.000 0.00 0.00 0.00 3.36
2571 3554 1.242076 CGCCATCCATTCCATTCCTC 58.758 55.000 0.00 0.00 0.00 3.71
2572 3555 1.625511 GCCATCCATTCCATTCCTCC 58.374 55.000 0.00 0.00 0.00 4.30
2573 3556 1.133388 GCCATCCATTCCATTCCTCCA 60.133 52.381 0.00 0.00 0.00 3.86
2574 3557 2.590821 CCATCCATTCCATTCCTCCAC 58.409 52.381 0.00 0.00 0.00 4.02
2575 3558 2.590821 CATCCATTCCATTCCTCCACC 58.409 52.381 0.00 0.00 0.00 4.61
2576 3559 0.546122 TCCATTCCATTCCTCCACCG 59.454 55.000 0.00 0.00 0.00 4.94
2577 3560 0.466189 CCATTCCATTCCTCCACCGG 60.466 60.000 0.00 0.00 0.00 5.28
2578 3561 0.255890 CATTCCATTCCTCCACCGGT 59.744 55.000 0.00 0.00 0.00 5.28
2579 3562 0.255890 ATTCCATTCCTCCACCGGTG 59.744 55.000 28.26 28.26 0.00 4.94
2668 3651 4.551148 TCCATGTCGGACTTGGGA 57.449 55.556 31.19 21.33 42.02 4.37
2840 3831 2.747855 CGCTCCCTCAACTTGGCC 60.748 66.667 0.00 0.00 0.00 5.36
2847 3838 4.572571 TCAACTTGGCCGCCGGTT 62.573 61.111 4.45 12.90 0.00 4.44
2848 3839 4.341502 CAACTTGGCCGCCGGTTG 62.342 66.667 24.06 24.06 35.16 3.77
2849 3840 4.887190 AACTTGGCCGCCGGTTGT 62.887 61.111 16.55 5.44 0.00 3.32
2893 3897 2.552315 CCTGCGCTTTCACCTTTTCTTA 59.448 45.455 9.73 0.00 0.00 2.10
2933 3958 1.903877 CGGACTCCTGTTGGATGCCT 61.904 60.000 0.00 0.00 42.29 4.75
3001 4026 2.047655 TCGATGGTGACCGGCAAC 60.048 61.111 0.00 3.77 33.72 4.17
3014 4039 1.746239 GGCAACCCAATGGCAATGC 60.746 57.895 11.92 11.92 44.66 3.56
3026 4061 3.536548 GCAATGCCAATGCCAAGAA 57.463 47.368 0.00 0.00 37.85 2.52
3027 4062 1.081094 GCAATGCCAATGCCAAGAAC 58.919 50.000 0.00 0.00 37.85 3.01
3084 4120 7.622893 TGATTGATTGATGAAACGGAATACA 57.377 32.000 0.00 0.00 0.00 2.29
3098 4134 9.285770 GAAACGGAATACAACTCATTATTTTCC 57.714 33.333 0.00 0.00 0.00 3.13
3104 4140 9.921637 GAATACAACTCATTATTTTCCCAACAA 57.078 29.630 0.00 0.00 0.00 2.83
3118 4154 8.472007 TTTTCCCAACAATACAGTACATCTTT 57.528 30.769 0.00 0.00 0.00 2.52
3119 4155 7.447374 TTCCCAACAATACAGTACATCTTTG 57.553 36.000 0.00 0.00 0.00 2.77
3120 4156 6.774673 TCCCAACAATACAGTACATCTTTGA 58.225 36.000 0.00 0.00 0.00 2.69
3122 4158 7.888021 TCCCAACAATACAGTACATCTTTGATT 59.112 33.333 0.00 0.00 0.00 2.57
3123 4159 8.184192 CCCAACAATACAGTACATCTTTGATTC 58.816 37.037 0.00 0.00 0.00 2.52
3124 4160 8.950210 CCAACAATACAGTACATCTTTGATTCT 58.050 33.333 0.00 0.00 0.00 2.40
3127 4163 9.319143 ACAATACAGTACATCTTTGATTCTAGC 57.681 33.333 0.00 0.00 0.00 3.42
3128 4164 9.539825 CAATACAGTACATCTTTGATTCTAGCT 57.460 33.333 0.00 0.00 0.00 3.32
3131 4167 8.299990 ACAGTACATCTTTGATTCTAGCTACT 57.700 34.615 0.00 0.00 0.00 2.57
3132 4168 9.409918 ACAGTACATCTTTGATTCTAGCTACTA 57.590 33.333 0.00 0.00 0.00 1.82
3133 4169 9.672086 CAGTACATCTTTGATTCTAGCTACTAC 57.328 37.037 0.00 0.00 0.00 2.73
3136 4396 7.197017 ACATCTTTGATTCTAGCTACTACGTG 58.803 38.462 0.00 0.00 0.00 4.49
3158 4418 8.574196 CGTGTGATGAACATGTATTATCTACA 57.426 34.615 0.00 8.01 41.97 2.74
3160 4420 9.534565 GTGTGATGAACATGTATTATCTACAGT 57.465 33.333 0.00 0.00 41.97 3.55
3179 4439 9.992910 TCTACAGTACAGTAATTATTACGTGTG 57.007 33.333 20.05 17.09 41.01 3.82
3180 4440 9.229784 CTACAGTACAGTAATTATTACGTGTGG 57.770 37.037 20.05 13.39 41.01 4.17
3181 4441 7.037438 ACAGTACAGTAATTATTACGTGTGGG 58.963 38.462 20.05 14.61 41.01 4.61
3182 4442 7.093814 ACAGTACAGTAATTATTACGTGTGGGA 60.094 37.037 20.05 7.15 41.01 4.37
3183 4443 7.760794 CAGTACAGTAATTATTACGTGTGGGAA 59.239 37.037 20.05 6.92 41.01 3.97
3184 4444 6.973229 ACAGTAATTATTACGTGTGGGAAC 57.027 37.500 14.58 0.00 41.01 3.62
3185 4445 5.876460 ACAGTAATTATTACGTGTGGGAACC 59.124 40.000 14.58 0.00 45.30 3.62
3200 4460 2.851045 ACCGGGCAGGGTTCATTT 59.149 55.556 6.32 0.00 46.96 2.32
3201 4461 1.304134 ACCGGGCAGGGTTCATTTC 60.304 57.895 6.32 0.00 46.96 2.17
3202 4462 1.304052 CCGGGCAGGGTTCATTTCA 60.304 57.895 0.00 0.00 35.97 2.69
3203 4463 0.684153 CCGGGCAGGGTTCATTTCAT 60.684 55.000 0.00 0.00 35.97 2.57
3204 4464 1.409521 CCGGGCAGGGTTCATTTCATA 60.410 52.381 0.00 0.00 35.97 2.15
3232 4492 9.045223 TCATTCATTAACATGTAGTATGAGTGC 57.955 33.333 22.06 0.00 35.00 4.40
3233 4493 8.829612 CATTCATTAACATGTAGTATGAGTGCA 58.170 33.333 18.45 7.68 30.90 4.57
3319 4582 0.739813 GGTTCGGGACATCAACCTCG 60.740 60.000 0.00 0.00 37.24 4.63
3378 4641 2.661866 ACGCACGAGCCACTGTTC 60.662 61.111 0.00 0.00 37.52 3.18
3471 4734 2.818432 TCTCGACAAGGTCAAGGTACTC 59.182 50.000 0.00 0.00 38.49 2.59
3472 4735 1.891150 TCGACAAGGTCAAGGTACTCC 59.109 52.381 0.00 0.00 38.49 3.85
3474 4737 3.087031 CGACAAGGTCAAGGTACTCCTA 58.913 50.000 0.00 0.00 44.35 2.94
3475 4738 3.119566 CGACAAGGTCAAGGTACTCCTAC 60.120 52.174 0.00 0.00 44.35 3.18
3476 4739 3.830755 GACAAGGTCAAGGTACTCCTACA 59.169 47.826 0.00 0.00 44.35 2.74
3508 4773 1.063806 CCAGCTAGATAATGCGTCGC 58.936 55.000 11.10 11.10 0.00 5.19
3568 4842 3.875727 CACAACATTCTGATCCAGCTAGG 59.124 47.826 0.00 0.00 39.47 3.02
3587 4861 6.205853 AGCTAGGTAGTGTCTGATAAGATTCG 59.794 42.308 0.00 0.00 0.00 3.34
3588 4862 5.776173 AGGTAGTGTCTGATAAGATTCGG 57.224 43.478 0.00 0.00 0.00 4.30
3610 4884 5.126707 CGGAGTAATTAGGACCACTTACAGT 59.873 44.000 11.28 0.00 0.00 3.55
3641 4922 1.858798 GCATTATTCTGCGCTGCTGTG 60.859 52.381 9.73 0.00 31.49 3.66
3700 5146 8.763356 CAGCTAGACTCATTTTGTATCTTCATC 58.237 37.037 0.00 0.00 0.00 2.92
3753 5199 3.006217 TGGATCTGATGGTAGATTCTGCG 59.994 47.826 0.00 0.00 37.53 5.18
3804 5250 3.050275 GACAAGAGTGGCGGCACC 61.050 66.667 35.34 26.18 39.84 5.01
3805 5251 4.988598 ACAAGAGTGGCGGCACCG 62.989 66.667 35.34 23.77 43.94 4.94
3904 5350 4.998033 ACGTCAAAGGAAAGAAGATCTTCC 59.002 41.667 28.01 16.24 40.33 3.46
3906 5352 5.350091 CGTCAAAGGAAAGAAGATCTTCCTC 59.650 44.000 28.01 23.47 40.33 3.71
4128 5582 0.251354 AGGTGCACAGGCTGATACTG 59.749 55.000 23.66 10.13 41.91 2.74
4170 5624 3.003480 AGAGGACAAGAATTTACTGCGC 58.997 45.455 0.00 0.00 0.00 6.09
4392 5846 3.131400 GTCCACTAGACTCCCAATCACTC 59.869 52.174 0.00 0.00 42.69 3.51
4415 5869 9.167311 ACTCCAGAAAATGAAGAATGTATGTAC 57.833 33.333 0.00 0.00 0.00 2.90
4416 5870 9.166173 CTCCAGAAAATGAAGAATGTATGTACA 57.834 33.333 0.00 0.00 40.98 2.90
4440 5922 7.667219 ACATATGAATGTATCCCCAATCTTCAC 59.333 37.037 10.38 0.00 44.66 3.18
4444 5926 6.377996 TGAATGTATCCCCAATCTTCACAAAG 59.622 38.462 0.00 0.00 0.00 2.77
4481 5963 5.255710 TGATAGCTAGCTGACTTGAACTC 57.744 43.478 27.68 9.58 0.00 3.01
4483 5965 1.203523 AGCTAGCTGACTTGAACTCCG 59.796 52.381 18.57 0.00 0.00 4.63
4484 5966 1.202582 GCTAGCTGACTTGAACTCCGA 59.797 52.381 7.70 0.00 0.00 4.55
4485 5967 2.159170 GCTAGCTGACTTGAACTCCGAT 60.159 50.000 7.70 0.00 0.00 4.18
4486 5968 3.066900 GCTAGCTGACTTGAACTCCGATA 59.933 47.826 7.70 0.00 0.00 2.92
4487 5969 4.440250 GCTAGCTGACTTGAACTCCGATAA 60.440 45.833 7.70 0.00 0.00 1.75
4488 5970 4.537135 AGCTGACTTGAACTCCGATAAA 57.463 40.909 0.00 0.00 0.00 1.40
4489 5971 4.894784 AGCTGACTTGAACTCCGATAAAA 58.105 39.130 0.00 0.00 0.00 1.52
4567 6049 1.619654 CCTTTGTGTCAAGGATGGCA 58.380 50.000 0.00 0.00 39.29 4.92
4723 6205 4.767255 CGACCCCAGCTGCACTCC 62.767 72.222 8.66 0.00 0.00 3.85
4852 6335 0.032678 CGCCGCTCTATCACCATTCT 59.967 55.000 0.00 0.00 0.00 2.40
4879 6362 2.911484 CTGAAACTCATAGTGGAGCCC 58.089 52.381 0.00 0.00 38.50 5.19
4915 6398 2.554032 CCTCACCTTAACCAAAGTGCAG 59.446 50.000 0.00 0.00 32.89 4.41
4952 6435 7.571080 ACTACTACATACTAAGAGAGGCAAC 57.429 40.000 0.00 0.00 0.00 4.17
4987 6476 9.250624 GATATAATAATGTTAGCATCCGTCCTC 57.749 37.037 0.00 0.00 33.50 3.71
5045 6538 0.895530 ATGAATGCAGCTTGCTTGCT 59.104 45.000 14.43 0.00 45.31 3.91
5120 6614 4.332828 GTGGGTATGTTAAGGTTCAGCTT 58.667 43.478 0.00 0.00 0.00 3.74
5121 6615 4.156008 GTGGGTATGTTAAGGTTCAGCTTG 59.844 45.833 1.40 0.00 0.00 4.01
5158 6652 6.543831 GTGCCAGATGAGTAAATGTCCTAATT 59.456 38.462 0.00 0.00 0.00 1.40
5161 6655 8.131731 GCCAGATGAGTAAATGTCCTAATTTTC 58.868 37.037 0.00 0.00 32.16 2.29
5194 6688 1.004185 CAGTCGCAGCTGTTATGATGC 60.004 52.381 16.64 0.00 44.76 3.91
5205 6699 4.631131 CTGTTATGATGCGAATACCCAGA 58.369 43.478 0.00 0.00 0.00 3.86
5220 6714 7.065803 CGAATACCCAGATCAAAATACAACACT 59.934 37.037 0.00 0.00 0.00 3.55
5239 6733 9.915629 ACAACACTAATTACAAGACTAGAGAAG 57.084 33.333 0.00 0.00 0.00 2.85
5265 6759 9.503427 GTGTAATAAGCATGTGAATAAAGGAAC 57.497 33.333 0.00 0.00 0.00 3.62
5286 6780 1.338973 ACAAAATCCTGTGTGCAGCAG 59.661 47.619 0.00 10.38 41.26 4.24
5287 6781 0.316204 AAAATCCTGTGTGCAGCAGC 59.684 50.000 11.57 0.00 41.26 5.25
5314 6808 2.166741 TGTCTGACAAACAAAACGCG 57.833 45.000 8.27 3.53 0.00 6.01
5319 6813 1.199327 TGACAAACAAAACGCGAACCA 59.801 42.857 15.93 0.00 0.00 3.67
5343 6837 4.180057 TGTCCAACTTGCAACACAAAATC 58.820 39.130 0.00 0.00 37.96 2.17
5414 6908 3.951775 TGAGAAGCTCAGGAAGAGTTC 57.048 47.619 0.00 0.00 46.47 3.01
5454 6951 6.046593 GCCAGCACAATGTATACAGTACTAA 58.953 40.000 11.91 0.00 0.00 2.24
5455 6952 6.537301 GCCAGCACAATGTATACAGTACTAAA 59.463 38.462 11.91 0.00 0.00 1.85
5456 6953 7.465513 GCCAGCACAATGTATACAGTACTAAAC 60.466 40.741 11.91 0.00 0.00 2.01
5457 6954 7.011109 CCAGCACAATGTATACAGTACTAAACC 59.989 40.741 11.91 0.00 0.00 3.27
5458 6955 7.547722 CAGCACAATGTATACAGTACTAAACCA 59.452 37.037 11.91 0.00 0.00 3.67
5459 6956 8.098286 AGCACAATGTATACAGTACTAAACCAA 58.902 33.333 11.91 0.00 0.00 3.67
5460 6957 8.723311 GCACAATGTATACAGTACTAAACCAAA 58.277 33.333 11.91 0.00 0.00 3.28
5535 7032 8.488668 CAAAATGATTCCCAAGGAAAAGGATAT 58.511 33.333 0.00 0.00 45.41 1.63
5536 7033 9.728100 AAAATGATTCCCAAGGAAAAGGATATA 57.272 29.630 0.00 0.00 45.41 0.86
5537 7034 8.712228 AATGATTCCCAAGGAAAAGGATATAC 57.288 34.615 0.00 0.00 45.41 1.47
5583 7080 7.095649 GGCAAATAAGGCAAAACTACAGAAAAG 60.096 37.037 0.00 0.00 0.00 2.27
5609 7106 3.370953 GGTTCTGCCACCAGATAATGTCT 60.371 47.826 0.00 0.00 46.84 3.41
5617 7114 5.424757 CCACCAGATAATGTCTTTAACCGA 58.575 41.667 0.00 0.00 34.00 4.69
5619 7116 6.183360 CCACCAGATAATGTCTTTAACCGAAC 60.183 42.308 0.00 0.00 34.00 3.95
5665 7162 7.114754 AGACTGAACATTTACATGGTGATCAT 58.885 34.615 0.00 0.00 34.27 2.45
5684 7181 0.249120 TGGTAGCGCAAGTGCATACT 59.751 50.000 11.47 0.28 42.21 2.12
5828 7328 4.389890 TCTTGCAGCAACTTTTGAACAT 57.610 36.364 2.83 0.00 0.00 2.71
5839 7339 7.712205 AGCAACTTTTGAACATGATTAGCTTTT 59.288 29.630 0.00 0.00 0.00 2.27
5852 7352 7.880160 TGATTAGCTTTTACATAATGCTGGT 57.120 32.000 0.00 0.00 35.47 4.00
5854 7354 9.573166 TGATTAGCTTTTACATAATGCTGGTAT 57.427 29.630 0.00 1.03 35.47 2.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.228675 AAGAGCAAGGCCAAGGTGG 60.229 57.895 5.01 0.00 41.55 4.61
1 2 1.246737 GGAAGAGCAAGGCCAAGGTG 61.247 60.000 5.01 0.00 0.00 4.00
2 3 1.075659 GGAAGAGCAAGGCCAAGGT 59.924 57.895 5.01 1.08 0.00 3.50
3 4 1.680314 GGGAAGAGCAAGGCCAAGG 60.680 63.158 5.01 0.00 0.00 3.61
4 5 0.251519 AAGGGAAGAGCAAGGCCAAG 60.252 55.000 5.01 0.00 0.00 3.61
5 6 0.188342 AAAGGGAAGAGCAAGGCCAA 59.812 50.000 5.01 0.00 0.00 4.52
6 7 0.540365 CAAAGGGAAGAGCAAGGCCA 60.540 55.000 5.01 0.00 0.00 5.36
7 8 1.881903 GCAAAGGGAAGAGCAAGGCC 61.882 60.000 0.00 0.00 0.00 5.19
8 9 1.588597 GCAAAGGGAAGAGCAAGGC 59.411 57.895 0.00 0.00 0.00 4.35
9 10 1.589716 CGGCAAAGGGAAGAGCAAGG 61.590 60.000 0.00 0.00 0.00 3.61
10 11 1.878775 CGGCAAAGGGAAGAGCAAG 59.121 57.895 0.00 0.00 0.00 4.01
11 12 2.268076 GCGGCAAAGGGAAGAGCAA 61.268 57.895 0.00 0.00 0.00 3.91
12 13 2.672996 GCGGCAAAGGGAAGAGCA 60.673 61.111 0.00 0.00 0.00 4.26
13 14 3.443925 GGCGGCAAAGGGAAGAGC 61.444 66.667 3.07 0.00 0.00 4.09
14 15 3.127533 CGGCGGCAAAGGGAAGAG 61.128 66.667 10.53 0.00 0.00 2.85
15 16 3.185299 TTCGGCGGCAAAGGGAAGA 62.185 57.895 10.53 0.00 0.00 2.87
16 17 2.671619 TTCGGCGGCAAAGGGAAG 60.672 61.111 10.53 0.00 0.00 3.46
17 18 2.671619 CTTCGGCGGCAAAGGGAA 60.672 61.111 10.53 2.76 0.00 3.97
18 19 3.185299 TTCTTCGGCGGCAAAGGGA 62.185 57.895 10.04 0.00 0.00 4.20
19 20 2.671619 TTCTTCGGCGGCAAAGGG 60.672 61.111 10.04 0.00 0.00 3.95
20 21 2.870372 CTTCTTCGGCGGCAAAGG 59.130 61.111 10.04 0.00 0.00 3.11
21 22 2.176792 GCTTCTTCGGCGGCAAAG 59.823 61.111 10.53 6.54 0.00 2.77
22 23 2.593148 TGCTTCTTCGGCGGCAAA 60.593 55.556 10.53 0.00 0.00 3.68
23 24 3.353836 GTGCTTCTTCGGCGGCAA 61.354 61.111 10.53 1.56 36.43 4.52
24 25 3.899981 ATGTGCTTCTTCGGCGGCA 62.900 57.895 10.53 5.18 0.00 5.69
25 26 3.127533 ATGTGCTTCTTCGGCGGC 61.128 61.111 7.21 0.00 0.00 6.53
26 27 2.753966 CCATGTGCTTCTTCGGCGG 61.754 63.158 7.21 0.00 0.00 6.13
27 28 2.787249 CCATGTGCTTCTTCGGCG 59.213 61.111 0.00 0.00 0.00 6.46
28 29 2.486966 GCCATGTGCTTCTTCGGC 59.513 61.111 0.00 0.00 36.87 5.54
37 38 2.590007 CTAGCCCGAGCCATGTGC 60.590 66.667 0.00 0.00 41.25 4.57
38 39 2.109799 CCTAGCCCGAGCCATGTG 59.890 66.667 0.00 0.00 41.25 3.21
39 40 3.164269 CCCTAGCCCGAGCCATGT 61.164 66.667 0.00 0.00 41.25 3.21
40 41 2.270874 AAACCCTAGCCCGAGCCATG 62.271 60.000 0.00 0.00 41.25 3.66
41 42 1.984288 GAAACCCTAGCCCGAGCCAT 61.984 60.000 0.00 0.00 41.25 4.40
42 43 2.609610 AAACCCTAGCCCGAGCCA 60.610 61.111 0.00 0.00 41.25 4.75
43 44 2.189784 GAAACCCTAGCCCGAGCC 59.810 66.667 0.00 0.00 41.25 4.70
44 45 1.047034 TAGGAAACCCTAGCCCGAGC 61.047 60.000 0.00 0.00 35.26 5.03
45 46 1.619332 GATAGGAAACCCTAGCCCGAG 59.381 57.143 0.00 0.00 39.50 4.63
46 47 1.713297 GATAGGAAACCCTAGCCCGA 58.287 55.000 0.00 0.00 39.50 5.14
47 48 0.317479 CGATAGGAAACCCTAGCCCG 59.683 60.000 0.00 0.00 39.02 6.13
48 49 1.343789 GACGATAGGAAACCCTAGCCC 59.656 57.143 0.00 0.00 39.02 5.19
49 50 1.000496 CGACGATAGGAAACCCTAGCC 60.000 57.143 0.00 0.00 39.02 3.93
50 51 1.952296 TCGACGATAGGAAACCCTAGC 59.048 52.381 0.00 0.00 39.50 3.42
51 52 2.947652 TGTCGACGATAGGAAACCCTAG 59.052 50.000 11.62 0.00 39.50 3.02
52 53 3.003394 TGTCGACGATAGGAAACCCTA 57.997 47.619 11.62 0.00 40.36 3.53
53 54 1.843368 TGTCGACGATAGGAAACCCT 58.157 50.000 11.62 0.00 43.77 4.34
54 55 2.470821 CATGTCGACGATAGGAAACCC 58.529 52.381 11.62 0.00 43.77 4.11
55 56 2.100252 TCCATGTCGACGATAGGAAACC 59.900 50.000 11.62 0.00 43.77 3.27
56 57 3.372954 CTCCATGTCGACGATAGGAAAC 58.627 50.000 11.62 0.00 43.77 2.78
57 58 2.361119 CCTCCATGTCGACGATAGGAAA 59.639 50.000 16.72 0.00 43.77 3.13
58 59 1.954382 CCTCCATGTCGACGATAGGAA 59.046 52.381 16.72 0.00 43.77 3.36
59 60 1.605753 CCTCCATGTCGACGATAGGA 58.394 55.000 16.72 15.64 43.77 2.94
60 61 0.039074 GCCTCCATGTCGACGATAGG 60.039 60.000 11.62 15.03 43.77 2.57
61 62 0.386100 CGCCTCCATGTCGACGATAG 60.386 60.000 11.62 5.62 46.19 2.08
62 63 0.816421 TCGCCTCCATGTCGACGATA 60.816 55.000 11.62 0.00 0.00 2.92
63 64 2.064723 CTCGCCTCCATGTCGACGAT 62.065 60.000 11.62 2.87 0.00 3.73
64 65 2.748647 TCGCCTCCATGTCGACGA 60.749 61.111 11.62 0.00 0.00 4.20
65 66 2.278206 CTCGCCTCCATGTCGACG 60.278 66.667 11.62 0.00 0.00 5.12
66 67 1.517257 CACTCGCCTCCATGTCGAC 60.517 63.158 9.11 9.11 0.00 4.20
67 68 1.977009 ACACTCGCCTCCATGTCGA 60.977 57.895 0.00 0.00 0.00 4.20
68 69 1.807165 CACACTCGCCTCCATGTCG 60.807 63.158 0.00 0.00 0.00 4.35
69 70 0.737715 GTCACACTCGCCTCCATGTC 60.738 60.000 0.00 0.00 0.00 3.06
70 71 1.188219 AGTCACACTCGCCTCCATGT 61.188 55.000 0.00 0.00 0.00 3.21
71 72 0.817654 TAGTCACACTCGCCTCCATG 59.182 55.000 0.00 0.00 0.00 3.66
72 73 1.107114 CTAGTCACACTCGCCTCCAT 58.893 55.000 0.00 0.00 0.00 3.41
73 74 0.037734 TCTAGTCACACTCGCCTCCA 59.962 55.000 0.00 0.00 0.00 3.86
74 75 1.394618 ATCTAGTCACACTCGCCTCC 58.605 55.000 0.00 0.00 0.00 4.30
75 76 3.182967 CAAATCTAGTCACACTCGCCTC 58.817 50.000 0.00 0.00 0.00 4.70
76 77 2.675317 GCAAATCTAGTCACACTCGCCT 60.675 50.000 0.00 0.00 0.00 5.52
77 78 1.661112 GCAAATCTAGTCACACTCGCC 59.339 52.381 0.00 0.00 0.00 5.54
78 79 2.611518 AGCAAATCTAGTCACACTCGC 58.388 47.619 0.00 0.00 0.00 5.03
79 80 5.236655 TCTAGCAAATCTAGTCACACTCG 57.763 43.478 0.00 0.00 44.10 4.18
80 81 6.475076 CACATCTAGCAAATCTAGTCACACTC 59.525 42.308 0.00 0.00 44.10 3.51
81 82 6.336566 CACATCTAGCAAATCTAGTCACACT 58.663 40.000 0.00 0.00 44.10 3.55
82 83 5.521735 CCACATCTAGCAAATCTAGTCACAC 59.478 44.000 0.00 0.00 44.10 3.82
83 84 5.422012 TCCACATCTAGCAAATCTAGTCACA 59.578 40.000 0.00 0.00 44.10 3.58
84 85 5.751028 GTCCACATCTAGCAAATCTAGTCAC 59.249 44.000 0.00 0.00 44.10 3.67
85 86 5.450550 CGTCCACATCTAGCAAATCTAGTCA 60.451 44.000 0.00 0.00 44.10 3.41
86 87 4.979197 CGTCCACATCTAGCAAATCTAGTC 59.021 45.833 0.00 0.00 44.10 2.59
87 88 4.202161 CCGTCCACATCTAGCAAATCTAGT 60.202 45.833 0.00 0.00 44.10 2.57
88 89 4.302455 CCGTCCACATCTAGCAAATCTAG 58.698 47.826 0.00 0.00 44.90 2.43
89 90 3.069586 CCCGTCCACATCTAGCAAATCTA 59.930 47.826 0.00 0.00 0.00 1.98
90 91 2.158900 CCCGTCCACATCTAGCAAATCT 60.159 50.000 0.00 0.00 0.00 2.40
91 92 2.213499 CCCGTCCACATCTAGCAAATC 58.787 52.381 0.00 0.00 0.00 2.17
92 93 1.134098 CCCCGTCCACATCTAGCAAAT 60.134 52.381 0.00 0.00 0.00 2.32
93 94 0.251916 CCCCGTCCACATCTAGCAAA 59.748 55.000 0.00 0.00 0.00 3.68
94 95 0.616395 TCCCCGTCCACATCTAGCAA 60.616 55.000 0.00 0.00 0.00 3.91
95 96 0.616395 TTCCCCGTCCACATCTAGCA 60.616 55.000 0.00 0.00 0.00 3.49
96 97 0.105039 CTTCCCCGTCCACATCTAGC 59.895 60.000 0.00 0.00 0.00 3.42
97 98 1.137086 CACTTCCCCGTCCACATCTAG 59.863 57.143 0.00 0.00 0.00 2.43
98 99 1.191535 CACTTCCCCGTCCACATCTA 58.808 55.000 0.00 0.00 0.00 1.98
99 100 1.553690 CCACTTCCCCGTCCACATCT 61.554 60.000 0.00 0.00 0.00 2.90
100 101 1.078426 CCACTTCCCCGTCCACATC 60.078 63.158 0.00 0.00 0.00 3.06
101 102 0.914417 ATCCACTTCCCCGTCCACAT 60.914 55.000 0.00 0.00 0.00 3.21
102 103 1.537889 ATCCACTTCCCCGTCCACA 60.538 57.895 0.00 0.00 0.00 4.17
103 104 1.221021 GATCCACTTCCCCGTCCAC 59.779 63.158 0.00 0.00 0.00 4.02
104 105 1.229368 TGATCCACTTCCCCGTCCA 60.229 57.895 0.00 0.00 0.00 4.02
105 106 1.221021 GTGATCCACTTCCCCGTCC 59.779 63.158 0.00 0.00 0.00 4.79
106 107 0.391263 GTGTGATCCACTTCCCCGTC 60.391 60.000 6.98 0.00 41.11 4.79
107 108 1.677552 GTGTGATCCACTTCCCCGT 59.322 57.895 6.98 0.00 41.11 5.28
108 109 1.078426 GGTGTGATCCACTTCCCCG 60.078 63.158 12.27 0.00 43.94 5.73
109 110 1.303282 GGGTGTGATCCACTTCCCC 59.697 63.158 14.84 10.17 43.94 4.81
110 111 1.303282 GGGGTGTGATCCACTTCCC 59.697 63.158 16.37 16.37 43.94 3.97
111 112 1.208165 AGGGGGTGTGATCCACTTCC 61.208 60.000 12.27 12.88 43.94 3.46
112 113 0.253327 GAGGGGGTGTGATCCACTTC 59.747 60.000 12.27 6.86 43.94 3.01
113 114 1.208165 GGAGGGGGTGTGATCCACTT 61.208 60.000 12.27 0.00 43.94 3.16
114 115 1.616628 GGAGGGGGTGTGATCCACT 60.617 63.158 12.27 0.00 43.94 4.00
115 116 2.680370 GGGAGGGGGTGTGATCCAC 61.680 68.421 5.94 5.94 43.74 4.02
116 117 2.286121 GGGAGGGGGTGTGATCCA 60.286 66.667 0.00 0.00 33.24 3.41
117 118 3.097162 GGGGAGGGGGTGTGATCC 61.097 72.222 0.00 0.00 0.00 3.36
118 119 3.097162 GGGGGAGGGGGTGTGATC 61.097 72.222 0.00 0.00 0.00 2.92
140 141 4.675029 GTGTGTGTCGGTCCGGGG 62.675 72.222 12.29 0.00 0.00 5.73
141 142 4.675029 GGTGTGTGTCGGTCCGGG 62.675 72.222 12.29 0.00 0.00 5.73
142 143 4.675029 GGGTGTGTGTCGGTCCGG 62.675 72.222 12.29 0.00 0.00 5.14
143 144 3.918977 TGGGTGTGTGTCGGTCCG 61.919 66.667 4.39 4.39 0.00 4.79
144 145 2.280592 GTGGGTGTGTGTCGGTCC 60.281 66.667 0.00 0.00 0.00 4.46
145 146 1.885850 GTGTGGGTGTGTGTCGGTC 60.886 63.158 0.00 0.00 0.00 4.79
146 147 2.188469 GTGTGGGTGTGTGTCGGT 59.812 61.111 0.00 0.00 0.00 4.69
147 148 2.177580 GTGTGTGGGTGTGTGTCGG 61.178 63.158 0.00 0.00 0.00 4.79
148 149 1.448717 TGTGTGTGGGTGTGTGTCG 60.449 57.895 0.00 0.00 0.00 4.35
149 150 0.392461 AGTGTGTGTGGGTGTGTGTC 60.392 55.000 0.00 0.00 0.00 3.67
150 151 0.037590 AAGTGTGTGTGGGTGTGTGT 59.962 50.000 0.00 0.00 0.00 3.72
151 152 0.451383 CAAGTGTGTGTGGGTGTGTG 59.549 55.000 0.00 0.00 0.00 3.82
152 153 1.312371 GCAAGTGTGTGTGGGTGTGT 61.312 55.000 0.00 0.00 0.00 3.72
153 154 1.031571 AGCAAGTGTGTGTGGGTGTG 61.032 55.000 0.00 0.00 0.00 3.82
154 155 0.544223 TAGCAAGTGTGTGTGGGTGT 59.456 50.000 0.00 0.00 0.00 4.16
155 156 1.896220 ATAGCAAGTGTGTGTGGGTG 58.104 50.000 0.00 0.00 0.00 4.61
156 157 2.656947 AATAGCAAGTGTGTGTGGGT 57.343 45.000 0.00 0.00 0.00 4.51
157 158 5.446143 TTAAAATAGCAAGTGTGTGTGGG 57.554 39.130 0.00 0.00 0.00 4.61
158 159 7.704472 TCTTTTTAAAATAGCAAGTGTGTGTGG 59.296 33.333 0.55 0.00 0.00 4.17
159 160 8.627487 TCTTTTTAAAATAGCAAGTGTGTGTG 57.373 30.769 0.55 0.00 0.00 3.82
160 161 9.301153 CTTCTTTTTAAAATAGCAAGTGTGTGT 57.699 29.630 0.55 0.00 0.00 3.72
161 162 9.301153 ACTTCTTTTTAAAATAGCAAGTGTGTG 57.699 29.630 0.55 0.00 0.00 3.82
162 163 9.301153 CACTTCTTTTTAAAATAGCAAGTGTGT 57.699 29.630 20.54 8.44 36.37 3.72
163 164 8.755018 CCACTTCTTTTTAAAATAGCAAGTGTG 58.245 33.333 23.43 18.24 38.43 3.82
164 165 8.691797 TCCACTTCTTTTTAAAATAGCAAGTGT 58.308 29.630 23.43 12.13 38.43 3.55
165 166 8.968242 GTCCACTTCTTTTTAAAATAGCAAGTG 58.032 33.333 21.18 21.18 39.36 3.16
166 167 8.914011 AGTCCACTTCTTTTTAAAATAGCAAGT 58.086 29.630 0.55 5.27 0.00 3.16
167 168 9.750125 AAGTCCACTTCTTTTTAAAATAGCAAG 57.250 29.630 0.55 4.71 0.00 4.01
168 169 9.744468 GAAGTCCACTTCTTTTTAAAATAGCAA 57.256 29.630 11.55 0.00 46.59 3.91
184 185 2.207924 AGCGTCGGGAAGTCCACTT 61.208 57.895 0.00 0.00 39.23 3.16
185 186 2.600769 AGCGTCGGGAAGTCCACT 60.601 61.111 0.00 0.00 37.91 4.00
186 187 2.432628 CAGCGTCGGGAAGTCCAC 60.433 66.667 0.00 0.00 37.91 4.02
187 188 2.915659 ACAGCGTCGGGAAGTCCA 60.916 61.111 0.00 0.00 37.91 4.02
188 189 2.432628 CACAGCGTCGGGAAGTCC 60.433 66.667 0.00 0.00 0.00 3.85
189 190 2.432628 CCACAGCGTCGGGAAGTC 60.433 66.667 0.00 0.00 0.00 3.01
190 191 2.803817 AACCACAGCGTCGGGAAGT 61.804 57.895 0.00 0.00 0.00 3.01
191 192 2.030562 AACCACAGCGTCGGGAAG 59.969 61.111 0.00 0.00 0.00 3.46
192 193 2.280524 CAACCACAGCGTCGGGAA 60.281 61.111 0.00 0.00 0.00 3.97
193 194 4.308458 CCAACCACAGCGTCGGGA 62.308 66.667 0.00 0.00 0.00 5.14
197 198 3.357079 CTGCCCAACCACAGCGTC 61.357 66.667 0.00 0.00 0.00 5.19
201 202 2.113774 TCAGCTGCCCAACCACAG 59.886 61.111 9.47 0.00 36.96 3.66
202 203 2.203337 GTCAGCTGCCCAACCACA 60.203 61.111 9.47 0.00 0.00 4.17
230 231 2.159435 GCGTTTGTTTGGTGTCTGTCTT 60.159 45.455 0.00 0.00 0.00 3.01
235 236 1.063488 GCGCGTTTGTTTGGTGTCT 59.937 52.632 8.43 0.00 0.00 3.41
258 259 1.514228 CATGGACACGAGACGGACG 60.514 63.158 0.00 0.00 0.00 4.79
273 274 4.578871 TGAGTCCTATTTGTGTCCACATG 58.421 43.478 0.20 0.00 41.52 3.21
274 275 4.908601 TGAGTCCTATTTGTGTCCACAT 57.091 40.909 0.20 0.00 41.52 3.21
302 303 7.548196 TGTTCGTCTAGACAAATTTTTGACT 57.452 32.000 22.37 10.83 43.50 3.41
304 305 6.902948 CGTTGTTCGTCTAGACAAATTTTTGA 59.097 34.615 22.37 6.25 36.91 2.69
308 309 5.333111 GCTCGTTGTTCGTCTAGACAAATTT 60.333 40.000 22.37 0.00 40.80 1.82
312 313 2.658285 GCTCGTTGTTCGTCTAGACAA 58.342 47.619 22.37 12.57 40.80 3.18
313 314 1.399343 CGCTCGTTGTTCGTCTAGACA 60.399 52.381 22.37 7.25 40.80 3.41
315 316 0.870393 ACGCTCGTTGTTCGTCTAGA 59.130 50.000 0.00 0.00 40.80 2.43
317 318 1.462378 CGTACGCTCGTTGTTCGTCTA 60.462 52.381 0.52 0.00 40.80 2.59
320 321 1.727022 CCGTACGCTCGTTGTTCGT 60.727 57.895 10.49 0.00 40.80 3.85
323 324 1.372128 GACCCGTACGCTCGTTGTT 60.372 57.895 10.49 0.00 0.00 2.83
334 335 1.301874 CGCAAACCCAAGACCCGTA 60.302 57.895 0.00 0.00 0.00 4.02
341 342 2.637025 CACCGACGCAAACCCAAG 59.363 61.111 0.00 0.00 0.00 3.61
357 358 0.735978 CTGCACGACGGTCTAATGCA 60.736 55.000 22.10 22.10 43.70 3.96
360 361 0.172803 GGTCTGCACGACGGTCTAAT 59.827 55.000 6.57 0.00 43.79 1.73
362 363 1.174078 TTGGTCTGCACGACGGTCTA 61.174 55.000 6.57 0.00 43.79 2.59
363 364 2.023414 TTTGGTCTGCACGACGGTCT 62.023 55.000 6.57 0.00 43.79 3.85
364 365 0.949105 ATTTGGTCTGCACGACGGTC 60.949 55.000 0.00 0.00 43.79 4.79
365 366 1.070786 ATTTGGTCTGCACGACGGT 59.929 52.632 0.00 0.00 43.79 4.83
366 367 1.497278 CATTTGGTCTGCACGACGG 59.503 57.895 0.00 0.00 43.79 4.79
367 368 1.154413 GCATTTGGTCTGCACGACG 60.154 57.895 9.29 0.00 43.79 5.12
368 369 1.948508 TGCATTTGGTCTGCACGAC 59.051 52.632 7.52 7.52 44.30 4.34
369 370 4.471761 TGCATTTGGTCTGCACGA 57.528 50.000 0.00 0.00 44.30 4.35
375 398 1.377202 ACGGCGATGCATTTGGTCT 60.377 52.632 16.62 0.00 0.00 3.85
386 409 2.325082 GCAACTCCAACACGGCGAT 61.325 57.895 16.62 0.00 33.14 4.58
393 416 0.759959 TCGTTAGGGCAACTCCAACA 59.240 50.000 0.00 0.00 34.77 3.33
411 434 2.359975 CGGCACACCCCTTTCCTC 60.360 66.667 0.00 0.00 0.00 3.71
412 435 3.175710 ACGGCACACCCCTTTCCT 61.176 61.111 0.00 0.00 0.00 3.36
413 436 2.983592 CACGGCACACCCCTTTCC 60.984 66.667 0.00 0.00 0.00 3.13
415 438 4.514585 TGCACGGCACACCCCTTT 62.515 61.111 0.00 0.00 31.71 3.11
422 445 3.123523 CTTGTTGCTGCACGGCACA 62.124 57.895 0.00 0.43 42.27 4.57
441 469 0.041238 TCTCCTCTCGGTGGAATGGT 59.959 55.000 0.00 0.00 32.61 3.55
445 473 0.033991 CTCCTCTCCTCTCGGTGGAA 60.034 60.000 0.00 0.00 32.61 3.53
446 474 0.914902 TCTCCTCTCCTCTCGGTGGA 60.915 60.000 0.00 0.00 0.00 4.02
447 475 0.465460 CTCTCCTCTCCTCTCGGTGG 60.465 65.000 0.00 0.00 0.00 4.61
448 476 0.465460 CCTCTCCTCTCCTCTCGGTG 60.465 65.000 0.00 0.00 0.00 4.94
449 477 0.917333 ACCTCTCCTCTCCTCTCGGT 60.917 60.000 0.00 0.00 0.00 4.69
452 480 0.106217 CCCACCTCTCCTCTCCTCTC 60.106 65.000 0.00 0.00 0.00 3.20
453 481 0.853586 ACCCACCTCTCCTCTCCTCT 60.854 60.000 0.00 0.00 0.00 3.69
454 482 0.686112 CACCCACCTCTCCTCTCCTC 60.686 65.000 0.00 0.00 0.00 3.71
455 483 1.390125 CACCCACCTCTCCTCTCCT 59.610 63.158 0.00 0.00 0.00 3.69
456 484 1.687493 CCACCCACCTCTCCTCTCC 60.687 68.421 0.00 0.00 0.00 3.71
616 644 5.388475 CGAATCAAAAGGTTCGTACTCACTG 60.388 44.000 2.93 0.00 41.52 3.66
665 693 2.511403 GGGAAGGGAAGGCGATCC 59.489 66.667 4.02 4.02 38.86 3.36
686 714 8.595362 AATATACTCCCCTTCTTTCTTTTTGG 57.405 34.615 0.00 0.00 0.00 3.28
736 770 9.803315 AGCGTTCTCTTTTCTTTTCTTTTTATT 57.197 25.926 0.00 0.00 0.00 1.40
737 771 9.452065 GAGCGTTCTCTTTTCTTTTCTTTTTAT 57.548 29.630 0.00 0.00 36.42 1.40
759 793 3.743911 ACTGTCTGTCTATCTATCGAGCG 59.256 47.826 0.00 0.00 0.00 5.03
760 794 5.697178 TGTACTGTCTGTCTATCTATCGAGC 59.303 44.000 0.00 0.00 0.00 5.03
761 795 6.702282 TGTGTACTGTCTGTCTATCTATCGAG 59.298 42.308 0.00 0.00 0.00 4.04
762 796 6.479331 GTGTGTACTGTCTGTCTATCTATCGA 59.521 42.308 0.00 0.00 0.00 3.59
765 805 8.462811 CAAAGTGTGTACTGTCTGTCTATCTAT 58.537 37.037 0.00 0.00 37.19 1.98
767 807 6.294787 CCAAAGTGTGTACTGTCTGTCTATCT 60.295 42.308 0.00 0.00 37.19 1.98
776 816 6.537660 GGGTAATATCCAAAGTGTGTACTGTC 59.462 42.308 0.00 0.00 37.19 3.51
777 817 6.412214 GGGTAATATCCAAAGTGTGTACTGT 58.588 40.000 0.00 0.00 37.19 3.55
899 967 1.602605 GGGGGACGGGAAACAAGTG 60.603 63.158 0.00 0.00 0.00 3.16
918 986 4.708421 TGGAGAGGTGGTACTGTGTTATAC 59.292 45.833 0.00 0.00 0.00 1.47
936 1008 4.017958 ACTTCTCTCTATGTGAGGTGGAGA 60.018 45.833 0.00 0.00 42.86 3.71
937 1009 4.097741 CACTTCTCTCTATGTGAGGTGGAG 59.902 50.000 0.00 0.00 40.35 3.86
938 1010 4.019858 CACTTCTCTCTATGTGAGGTGGA 58.980 47.826 0.00 0.00 40.35 4.02
940 1012 3.194329 TGCACTTCTCTCTATGTGAGGTG 59.806 47.826 0.00 0.00 44.07 4.00
941 1013 3.435275 TGCACTTCTCTCTATGTGAGGT 58.565 45.455 0.00 0.00 42.86 3.85
962 1089 7.559533 TCTCTCTAAACTGCTTGATCTCTGTAT 59.440 37.037 0.00 0.00 0.00 2.29
977 1104 7.345653 TCATCTCTCTCTCTCTCTCTCTAAACT 59.654 40.741 0.00 0.00 0.00 2.66
1005 1144 4.101448 GTCGCCATGCCCACCTCT 62.101 66.667 0.00 0.00 0.00 3.69
1022 1161 0.535335 TAGGCTTAGCACCACCTTCG 59.465 55.000 6.53 0.00 33.60 3.79
1298 1443 1.003839 GTGATGGCCGGAGACACAA 60.004 57.895 5.05 0.00 0.00 3.33
1392 1543 4.708177 TCAGGGAAAAGAAGTTGACTGAG 58.292 43.478 0.00 0.00 30.96 3.35
1401 1552 5.294306 GGCTTTGTTTTTCAGGGAAAAGAAG 59.706 40.000 4.55 10.23 41.55 2.85
1424 1604 5.163163 TGAGGGGTGAGAAATATGAAGATGG 60.163 44.000 0.00 0.00 0.00 3.51
1455 1639 2.433491 CCGACCGATGCCAAACGA 60.433 61.111 0.00 0.00 0.00 3.85
1469 1653 2.010582 GCAAACTGTTTGGTGCCCGA 62.011 55.000 28.61 0.00 40.94 5.14
1471 1655 0.530431 CTGCAAACTGTTTGGTGCCC 60.530 55.000 28.61 15.42 40.94 5.36
1472 1656 1.153597 GCTGCAAACTGTTTGGTGCC 61.154 55.000 28.61 15.73 40.94 5.01
1473 1657 1.481819 CGCTGCAAACTGTTTGGTGC 61.482 55.000 28.61 18.92 40.94 5.01
1474 1658 0.179140 ACGCTGCAAACTGTTTGGTG 60.179 50.000 28.61 21.99 40.94 4.17
1476 1660 1.925946 GCTACGCTGCAAACTGTTTGG 60.926 52.381 28.61 17.10 40.94 3.28
1477 1661 1.002468 AGCTACGCTGCAAACTGTTTG 60.002 47.619 24.98 24.98 43.44 2.93
1479 1663 0.868406 GAGCTACGCTGCAAACTGTT 59.132 50.000 0.00 0.00 39.88 3.16
1481 1665 1.790387 GGAGCTACGCTGCAAACTG 59.210 57.895 0.00 0.00 46.16 3.16
1494 1710 2.504996 CTCCATCTCTTCTTTGGGAGCT 59.495 50.000 0.00 0.00 35.92 4.09
1538 1754 3.020984 TCCTTCCCTCAACAACAACAAC 58.979 45.455 0.00 0.00 0.00 3.32
1680 2192 3.366985 GGCCAACCTATGTTTGTTGCTAC 60.367 47.826 0.00 0.00 40.34 3.58
1681 2193 2.823154 GGCCAACCTATGTTTGTTGCTA 59.177 45.455 0.00 0.00 40.34 3.49
1682 2194 1.618343 GGCCAACCTATGTTTGTTGCT 59.382 47.619 0.00 0.00 40.34 3.91
1761 2273 2.249413 CTCCTACTGCACAGCTGGGG 62.249 65.000 19.71 10.82 0.00 4.96
1762 2274 1.220206 CTCCTACTGCACAGCTGGG 59.780 63.158 19.93 16.72 0.00 4.45
1770 2282 7.172342 ACCATTTGTTTAATACTCCTACTGCA 58.828 34.615 0.00 0.00 0.00 4.41
1851 2367 5.107453 CCTGTTAACGTTGCAACTTCTAGAG 60.107 44.000 26.09 15.18 0.00 2.43
1906 2430 5.545335 AGGAAAGGCCAAATTCTGAAATTCT 59.455 36.000 5.01 0.00 40.02 2.40
1945 2469 7.517320 TGGTATGTATCTTTGCTATCCAACAT 58.483 34.615 0.00 0.00 31.97 2.71
1959 2483 9.944079 AGCTCACCTAATATATGGTATGTATCT 57.056 33.333 0.00 0.00 34.79 1.98
1963 2487 6.156949 CCCAGCTCACCTAATATATGGTATGT 59.843 42.308 0.00 0.00 34.79 2.29
1967 2491 3.264450 GCCCAGCTCACCTAATATATGGT 59.736 47.826 0.00 0.00 36.96 3.55
1968 2492 3.679917 CGCCCAGCTCACCTAATATATGG 60.680 52.174 0.00 0.00 0.00 2.74
1969 2493 3.525537 CGCCCAGCTCACCTAATATATG 58.474 50.000 0.00 0.00 0.00 1.78
1970 2494 2.093447 GCGCCCAGCTCACCTAATATAT 60.093 50.000 0.00 0.00 44.04 0.86
1971 2495 1.275291 GCGCCCAGCTCACCTAATATA 59.725 52.381 0.00 0.00 44.04 0.86
1972 2496 0.035458 GCGCCCAGCTCACCTAATAT 59.965 55.000 0.00 0.00 44.04 1.28
2023 2556 3.329277 TCAGTTTTAGTAGGGGTGGGTT 58.671 45.455 0.00 0.00 0.00 4.11
2032 2565 7.119699 TCCTGCAACATCATTCAGTTTTAGTAG 59.880 37.037 0.00 0.00 0.00 2.57
2046 2579 1.351076 TGTCCTCTCCTGCAACATCA 58.649 50.000 0.00 0.00 0.00 3.07
2049 2582 0.321919 GCATGTCCTCTCCTGCAACA 60.322 55.000 0.00 0.00 34.77 3.33
2050 2583 0.321919 TGCATGTCCTCTCCTGCAAC 60.322 55.000 0.00 0.00 41.33 4.17
2138 2909 5.461078 TCTCTACAGTTACGTGCTTTGTTTC 59.539 40.000 0.00 0.00 0.00 2.78
2146 2918 2.161808 TCAGCTCTCTACAGTTACGTGC 59.838 50.000 0.00 0.00 0.00 5.34
2171 2943 3.264450 CAGGGAGTTAATCACCTTGACCT 59.736 47.826 0.00 0.00 36.34 3.85
2172 2944 3.009143 ACAGGGAGTTAATCACCTTGACC 59.991 47.826 12.07 0.00 37.34 4.02
2180 2952 6.954684 GGATAGGATCTACAGGGAGTTAATCA 59.045 42.308 0.00 0.00 0.00 2.57
2184 2956 7.848821 ATAGGATAGGATCTACAGGGAGTTA 57.151 40.000 0.00 0.00 0.00 2.24
2191 2963 8.254508 GCCAAAACTATAGGATAGGATCTACAG 58.745 40.741 4.43 0.00 0.00 2.74
2207 2985 3.574614 GTTTGCATCACGCCAAAACTAT 58.425 40.909 0.00 0.00 41.33 2.12
2252 3030 1.138661 TCGGATGATGCACATGCTGTA 59.861 47.619 15.01 0.00 43.57 2.74
2281 3094 6.241207 TCAAGGACGAACAAGATTCATTTC 57.759 37.500 0.00 0.00 0.00 2.17
2286 3099 3.436704 TGCATCAAGGACGAACAAGATTC 59.563 43.478 0.00 0.00 0.00 2.52
2483 3464 0.790207 ACTCTATGTTGCGTTGCGTG 59.210 50.000 0.00 0.00 0.00 5.34
2661 3644 2.677228 CGGCTCCCAATCCCAAGT 59.323 61.111 0.00 0.00 0.00 3.16
2840 3831 3.403057 CAGACGACACAACCGGCG 61.403 66.667 0.00 0.00 40.56 6.46
2844 3835 1.444250 TGGGACAGACGACACAACC 59.556 57.895 0.00 0.00 0.00 3.77
2893 3897 3.854669 CCTCCCGGCGCTCAAGAT 61.855 66.667 7.64 0.00 0.00 2.40
3014 4039 2.094675 AGGAATCGTTCTTGGCATTGG 58.905 47.619 0.00 0.00 0.00 3.16
3018 4043 2.832129 AGAGTAGGAATCGTTCTTGGCA 59.168 45.455 0.00 0.00 0.00 4.92
3019 4044 3.131400 AGAGAGTAGGAATCGTTCTTGGC 59.869 47.826 0.00 0.00 0.00 4.52
3020 4045 4.993029 AGAGAGTAGGAATCGTTCTTGG 57.007 45.455 0.00 0.00 0.00 3.61
3052 4088 8.377681 CCGTTTCATCAATCAATCAAATCAAAG 58.622 33.333 0.00 0.00 0.00 2.77
3053 4089 8.087136 TCCGTTTCATCAATCAATCAAATCAAA 58.913 29.630 0.00 0.00 0.00 2.69
3056 4092 8.638685 ATTCCGTTTCATCAATCAATCAAATC 57.361 30.769 0.00 0.00 0.00 2.17
3057 4093 9.520204 GTATTCCGTTTCATCAATCAATCAAAT 57.480 29.630 0.00 0.00 0.00 2.32
3084 4120 9.088987 ACTGTATTGTTGGGAAAATAATGAGTT 57.911 29.630 0.00 0.00 0.00 3.01
3098 4134 8.950210 AGAATCAAAGATGTACTGTATTGTTGG 58.050 33.333 0.00 0.00 0.00 3.77
3118 4154 5.820947 TCATCACACGTAGTAGCTAGAATCA 59.179 40.000 0.00 0.00 41.61 2.57
3119 4155 6.301687 TCATCACACGTAGTAGCTAGAATC 57.698 41.667 0.00 0.00 41.61 2.52
3120 4156 6.095021 TGTTCATCACACGTAGTAGCTAGAAT 59.905 38.462 0.00 0.00 41.61 2.40
3122 4158 4.939439 TGTTCATCACACGTAGTAGCTAGA 59.061 41.667 0.00 0.00 41.61 2.43
3123 4159 5.231265 TGTTCATCACACGTAGTAGCTAG 57.769 43.478 0.00 0.00 41.61 3.42
3124 4160 5.124936 ACATGTTCATCACACGTAGTAGCTA 59.875 40.000 0.00 0.00 41.61 3.32
3125 4161 4.082190 ACATGTTCATCACACGTAGTAGCT 60.082 41.667 0.00 0.00 41.61 3.32
3127 4163 7.987268 AATACATGTTCATCACACGTAGTAG 57.013 36.000 2.30 0.00 41.61 2.57
3128 4164 9.673454 GATAATACATGTTCATCACACGTAGTA 57.327 33.333 2.30 0.00 41.61 1.82
3130 4166 8.803201 AGATAATACATGTTCATCACACGTAG 57.197 34.615 2.30 0.00 37.47 3.51
3131 4167 9.673454 GTAGATAATACATGTTCATCACACGTA 57.327 33.333 2.30 0.00 38.39 3.57
3132 4168 8.194769 TGTAGATAATACATGTTCATCACACGT 58.805 33.333 2.30 0.00 38.61 4.49
3133 4169 8.574196 TGTAGATAATACATGTTCATCACACG 57.426 34.615 2.30 0.00 38.61 4.49
3154 4414 9.229784 CCACACGTAATAATTACTGTACTGTAG 57.770 37.037 11.79 2.39 33.98 2.74
3156 4416 7.037438 CCCACACGTAATAATTACTGTACTGT 58.963 38.462 10.46 10.46 33.98 3.55
3157 4417 7.259882 TCCCACACGTAATAATTACTGTACTG 58.740 38.462 0.00 0.00 33.98 2.74
3158 4418 7.408756 TCCCACACGTAATAATTACTGTACT 57.591 36.000 0.00 0.00 33.98 2.73
3160 4420 7.041107 GGTTCCCACACGTAATAATTACTGTA 58.959 38.462 0.00 0.00 33.98 2.74
3161 4421 5.876460 GGTTCCCACACGTAATAATTACTGT 59.124 40.000 0.00 0.00 33.98 3.55
3162 4422 5.005971 CGGTTCCCACACGTAATAATTACTG 59.994 44.000 0.00 0.00 33.98 2.74
3164 4424 4.270808 CCGGTTCCCACACGTAATAATTAC 59.729 45.833 0.00 0.00 0.00 1.89
3166 4426 3.272581 CCGGTTCCCACACGTAATAATT 58.727 45.455 0.00 0.00 0.00 1.40
3167 4427 2.420408 CCCGGTTCCCACACGTAATAAT 60.420 50.000 0.00 0.00 0.00 1.28
3168 4428 1.066286 CCCGGTTCCCACACGTAATAA 60.066 52.381 0.00 0.00 0.00 1.40
3169 4429 0.536260 CCCGGTTCCCACACGTAATA 59.464 55.000 0.00 0.00 0.00 0.98
3170 4430 1.297364 CCCGGTTCCCACACGTAAT 59.703 57.895 0.00 0.00 0.00 1.89
3171 4431 2.742403 CCCGGTTCCCACACGTAA 59.258 61.111 0.00 0.00 0.00 3.18
3172 4432 4.006357 GCCCGGTTCCCACACGTA 62.006 66.667 0.00 0.00 0.00 3.57
3183 4443 1.304134 GAAATGAACCCTGCCCGGT 60.304 57.895 0.00 0.00 37.93 5.28
3184 4444 0.684153 ATGAAATGAACCCTGCCCGG 60.684 55.000 0.00 0.00 0.00 5.73
3185 4445 2.051334 TATGAAATGAACCCTGCCCG 57.949 50.000 0.00 0.00 0.00 6.13
3186 4446 3.960102 TGAATATGAAATGAACCCTGCCC 59.040 43.478 0.00 0.00 0.00 5.36
3187 4447 5.796424 ATGAATATGAAATGAACCCTGCC 57.204 39.130 0.00 0.00 0.00 4.85
3188 4448 6.808829 TGAATGAATATGAAATGAACCCTGC 58.191 36.000 0.00 0.00 0.00 4.85
3218 4478 3.135348 ACCTGCATGCACTCATACTACAT 59.865 43.478 18.46 0.00 0.00 2.29
3221 4481 2.103094 GGACCTGCATGCACTCATACTA 59.897 50.000 18.46 0.00 0.00 1.82
3222 4482 1.134280 GGACCTGCATGCACTCATACT 60.134 52.381 18.46 0.00 0.00 2.12
3224 4484 0.911053 TGGACCTGCATGCACTCATA 59.089 50.000 18.46 4.70 0.00 2.15
3225 4485 0.393944 CTGGACCTGCATGCACTCAT 60.394 55.000 18.46 1.69 0.00 2.90
3227 4487 1.002868 ACTGGACCTGCATGCACTC 60.003 57.895 18.46 13.86 0.00 3.51
3228 4488 1.303074 CACTGGACCTGCATGCACT 60.303 57.895 18.46 4.27 0.00 4.40
3229 4489 1.174712 AACACTGGACCTGCATGCAC 61.175 55.000 18.46 7.77 0.00 4.57
3230 4490 0.890542 GAACACTGGACCTGCATGCA 60.891 55.000 21.29 21.29 0.00 3.96
3231 4491 0.890542 TGAACACTGGACCTGCATGC 60.891 55.000 11.82 11.82 0.00 4.06
3232 4492 0.877071 GTGAACACTGGACCTGCATG 59.123 55.000 0.00 0.00 0.00 4.06
3233 4493 0.767375 AGTGAACACTGGACCTGCAT 59.233 50.000 6.67 0.00 40.75 3.96
3303 4566 3.014085 GCCGAGGTTGATGTCCCGA 62.014 63.158 0.00 0.00 0.00 5.14
3470 4733 4.039730 GCTGGAGCTGAGAATTATGTAGGA 59.960 45.833 0.00 0.00 38.21 2.94
3471 4734 4.314121 GCTGGAGCTGAGAATTATGTAGG 58.686 47.826 0.00 0.00 38.21 3.18
3508 4773 2.766313 TGGTCCAAATGAGAACACTCG 58.234 47.619 0.00 0.00 33.80 4.18
3546 4816 3.875727 CCTAGCTGGATCAGAATGTTGTG 59.124 47.826 0.00 0.00 38.35 3.33
3568 4842 6.380095 ACTCCGAATCTTATCAGACACTAC 57.620 41.667 0.00 0.00 0.00 2.73
3610 4884 5.122239 GCGCAGAATAATGCAGGATTACATA 59.878 40.000 0.30 0.00 46.87 2.29
3700 5146 8.221944 TCCCTGGTTTGGTTTGGTTATATATAG 58.778 37.037 0.00 0.00 0.00 1.31
3706 5152 3.621682 TCCCTGGTTTGGTTTGGTTAT 57.378 42.857 0.00 0.00 0.00 1.89
3707 5153 3.399952 TTCCCTGGTTTGGTTTGGTTA 57.600 42.857 0.00 0.00 0.00 2.85
3709 5155 2.046292 CATTCCCTGGTTTGGTTTGGT 58.954 47.619 0.00 0.00 0.00 3.67
3711 5157 2.837532 CCATTCCCTGGTTTGGTTTG 57.162 50.000 0.00 0.00 40.49 2.93
3804 5250 3.478874 CGTCGTCAATCTTGATGTCTACG 59.521 47.826 10.96 9.98 43.12 3.51
3805 5251 4.496183 GTCGTCGTCAATCTTGATGTCTAC 59.504 45.833 10.96 5.53 43.12 2.59
3924 5370 2.597510 GGCTTGGACACGGCCTTT 60.598 61.111 0.00 0.00 42.31 3.11
4110 5564 0.745845 CCAGTATCAGCCTGTGCACC 60.746 60.000 15.69 0.00 41.13 5.01
4128 5582 1.281899 CGCTTTCCTTGACGATCTCC 58.718 55.000 0.00 0.00 0.00 3.71
4170 5624 3.918220 GCGCTGTGAAGGATCGCG 61.918 66.667 0.00 0.00 45.88 5.87
4415 5869 7.666804 TGTGAAGATTGGGGATACATTCATATG 59.333 37.037 0.00 0.00 37.79 1.78
4416 5870 7.758609 TGTGAAGATTGGGGATACATTCATAT 58.241 34.615 0.00 0.00 39.74 1.78
4421 5903 6.153340 CACTTTGTGAAGATTGGGGATACATT 59.847 38.462 0.00 0.00 35.23 2.71
4466 5948 5.654603 TTTATCGGAGTTCAAGTCAGCTA 57.345 39.130 0.00 0.00 0.00 3.32
4467 5949 4.537135 TTTATCGGAGTTCAAGTCAGCT 57.463 40.909 0.00 0.00 0.00 4.24
4468 5950 5.803020 ATTTTATCGGAGTTCAAGTCAGC 57.197 39.130 0.00 0.00 0.00 4.26
4481 5963 4.505191 CAGCTGCATTTCCAATTTTATCGG 59.495 41.667 0.00 0.00 0.00 4.18
4483 5965 5.230726 CGTCAGCTGCATTTCCAATTTTATC 59.769 40.000 9.47 0.00 0.00 1.75
4484 5966 5.104374 CGTCAGCTGCATTTCCAATTTTAT 58.896 37.500 9.47 0.00 0.00 1.40
4485 5967 4.217334 TCGTCAGCTGCATTTCCAATTTTA 59.783 37.500 9.47 0.00 0.00 1.52
4486 5968 3.005684 TCGTCAGCTGCATTTCCAATTTT 59.994 39.130 9.47 0.00 0.00 1.82
4487 5969 2.557924 TCGTCAGCTGCATTTCCAATTT 59.442 40.909 9.47 0.00 0.00 1.82
4488 5970 2.161855 TCGTCAGCTGCATTTCCAATT 58.838 42.857 9.47 0.00 0.00 2.32
4489 5971 1.825090 TCGTCAGCTGCATTTCCAAT 58.175 45.000 9.47 0.00 0.00 3.16
4591 6073 1.080569 GCCTTTTGGGATGTGCACG 60.081 57.895 13.13 0.00 40.82 5.34
4780 6262 7.460910 TGAGAGATATGAGTATCTTGAGCTCT 58.539 38.462 16.19 0.00 45.47 4.09
4852 6335 1.550524 ACTATGAGTTTCAGCGCTGGA 59.449 47.619 35.36 27.27 0.00 3.86
4915 6398 8.891671 AGTATGTAGTAGTAGTAGAAGCAGTC 57.108 38.462 0.00 0.00 0.00 3.51
4952 6435 6.037172 GCTAACATTATTATATCCAGGCCACG 59.963 42.308 5.01 0.00 0.00 4.94
4987 6476 4.029418 CGTACAAATTTCTTTGCATGAGCG 59.971 41.667 0.00 0.00 44.63 5.03
5045 6538 6.072119 ACGTGTGTATCTGTACATTCTCTCAA 60.072 38.462 0.00 0.00 42.43 3.02
5120 6614 1.077169 TCTGGCACCTTCCTCTAGTCA 59.923 52.381 0.00 0.00 0.00 3.41
5121 6615 1.853963 TCTGGCACCTTCCTCTAGTC 58.146 55.000 0.00 0.00 0.00 2.59
5158 6652 4.097135 TGCGACTGTTTTCTTGAATGGAAA 59.903 37.500 0.00 0.00 0.00 3.13
5161 6655 3.558505 CTGCGACTGTTTTCTTGAATGG 58.441 45.455 0.00 0.00 0.00 3.16
5190 6684 5.695851 ATTTTGATCTGGGTATTCGCATC 57.304 39.130 0.00 0.00 36.01 3.91
5194 6688 7.065803 AGTGTTGTATTTTGATCTGGGTATTCG 59.934 37.037 0.00 0.00 0.00 3.34
5196 6690 9.747898 TTAGTGTTGTATTTTGATCTGGGTATT 57.252 29.630 0.00 0.00 0.00 1.89
5197 6691 9.920946 ATTAGTGTTGTATTTTGATCTGGGTAT 57.079 29.630 0.00 0.00 0.00 2.73
5237 6731 9.461312 TCCTTTATTCACATGCTTATTACACTT 57.539 29.630 0.00 0.00 0.00 3.16
5238 6732 9.461312 TTCCTTTATTCACATGCTTATTACACT 57.539 29.630 0.00 0.00 0.00 3.55
5239 6733 9.503427 GTTCCTTTATTCACATGCTTATTACAC 57.497 33.333 0.00 0.00 0.00 2.90
5244 6738 7.701539 TGTGTTCCTTTATTCACATGCTTAT 57.298 32.000 0.00 0.00 36.17 1.73
5281 6775 3.499537 TGTCAGACAAAAGTATGCTGCTG 59.500 43.478 0.00 0.00 0.00 4.41
5314 6808 1.388547 TGCAAGTTGGACAGTGGTTC 58.611 50.000 4.75 0.00 0.00 3.62
5319 6813 1.832883 TGTGTTGCAAGTTGGACAGT 58.167 45.000 0.00 0.00 0.00 3.55
5343 6837 3.894759 AGGATGATTGACCCATTCACAG 58.105 45.455 0.00 0.00 32.26 3.66
5471 6968 2.993937 TCGGTTGTTTCTGTGAAGGTT 58.006 42.857 0.00 0.00 0.00 3.50
5481 6978 5.231265 AGTCTCTTGTTTTCGGTTGTTTC 57.769 39.130 0.00 0.00 0.00 2.78
5535 7032 6.874664 TGCCGTCTTAATTGTTGATTGTAGTA 59.125 34.615 0.00 0.00 0.00 1.82
5536 7033 5.703592 TGCCGTCTTAATTGTTGATTGTAGT 59.296 36.000 0.00 0.00 0.00 2.73
5537 7034 6.176975 TGCCGTCTTAATTGTTGATTGTAG 57.823 37.500 0.00 0.00 0.00 2.74
5550 7047 5.010213 AGTTTTGCCTTATTTGCCGTCTTAA 59.990 36.000 0.00 0.00 0.00 1.85
5609 7106 1.000827 TCGGTACTGCGTTCGGTTAAA 60.001 47.619 0.00 0.00 33.08 1.52
5617 7114 5.616488 AATTTAAACATCGGTACTGCGTT 57.384 34.783 0.00 0.12 0.00 4.84
5619 7116 6.255020 AGTCTAATTTAAACATCGGTACTGCG 59.745 38.462 0.00 0.00 0.00 5.18
5665 7162 0.249120 AGTATGCACTTGCGCTACCA 59.751 50.000 9.73 0.00 45.83 3.25
5684 7181 1.702401 TCTGTTGCTATTGGTGTGGGA 59.298 47.619 0.00 0.00 0.00 4.37
5785 7284 2.287644 TGTTCACGCTGACTTGAATGTG 59.712 45.455 0.00 0.00 36.56 3.21
5828 7328 7.880160 ACCAGCATTATGTAAAAGCTAATCA 57.120 32.000 0.00 0.00 32.02 2.57
5839 7339 8.978874 ACTGATTTCAATACCAGCATTATGTA 57.021 30.769 0.00 0.00 0.00 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.