Multiple sequence alignment - TraesCS4A01G131400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G131400 chr4A 100.000 5429 0 0 1 5429 175414051 175408623 0.000000e+00 10026.0
1 TraesCS4A01G131400 chr4A 97.143 105 2 1 4849 4953 175409098 175408995 5.590000e-40 176.0
2 TraesCS4A01G131400 chr4A 97.143 105 2 1 4954 5057 175409203 175409099 5.590000e-40 176.0
3 TraesCS4A01G131400 chr4A 90.244 123 6 2 2822 2938 86810149 86810027 7.280000e-34 156.0
4 TraesCS4A01G131400 chr4A 100.000 28 0 0 5259 5286 66606840 66606867 1.000000e-02 52.8
5 TraesCS4A01G131400 chr4D 96.507 2004 43 4 2951 4953 303836914 303838891 0.000000e+00 3288.0
6 TraesCS4A01G131400 chr4D 96.959 1184 33 3 1618 2800 303835631 303836812 0.000000e+00 1984.0
7 TraesCS4A01G131400 chr4D 90.476 840 21 20 684 1473 303834670 303835500 0.000000e+00 1053.0
8 TraesCS4A01G131400 chr4D 92.547 644 24 8 951 1570 303834983 303835626 0.000000e+00 902.0
9 TraesCS4A01G131400 chr4D 89.579 499 31 4 4951 5429 303838783 303839280 9.990000e-172 614.0
10 TraesCS4A01G131400 chr4D 94.444 36 2 0 5259 5294 374314822 374314857 7.600000e-04 56.5
11 TraesCS4A01G131400 chr4D 96.970 33 0 1 5254 5286 5569929 5569960 3.000000e-03 54.7
12 TraesCS4A01G131400 chr4B 97.640 1737 37 2 2951 4685 378768696 378770430 0.000000e+00 2977.0
13 TraesCS4A01G131400 chr4B 95.874 1115 32 6 1618 2725 378767476 378768583 0.000000e+00 1792.0
14 TraesCS4A01G131400 chr4B 90.609 969 32 13 668 1590 378766523 378767478 0.000000e+00 1230.0
15 TraesCS4A01G131400 chr4B 90.909 242 12 2 4685 4917 378770591 378770831 3.160000e-82 316.0
16 TraesCS4A01G131400 chr4B 88.542 96 9 2 2716 2811 454519343 454519250 1.240000e-21 115.0
17 TraesCS4A01G131400 chr5A 98.510 671 10 0 1 671 536711249 536710579 0.000000e+00 1184.0
18 TraesCS4A01G131400 chr5A 92.308 117 1 2 2832 2940 528581384 528581268 5.630000e-35 159.0
19 TraesCS4A01G131400 chr5A 93.333 75 5 0 5318 5392 621020637 621020711 1.600000e-20 111.0
20 TraesCS4A01G131400 chr1B 98.214 672 12 0 1 672 669919200 669919871 0.000000e+00 1175.0
21 TraesCS4A01G131400 chr1B 97.630 675 13 2 1 674 418166219 418165547 0.000000e+00 1155.0
22 TraesCS4A01G131400 chr2A 98.212 671 12 0 1 671 3582080 3581410 0.000000e+00 1173.0
23 TraesCS4A01G131400 chr2A 95.815 669 27 1 1 669 40956563 40955896 0.000000e+00 1079.0
24 TraesCS4A01G131400 chr2A 92.241 116 3 2 2822 2931 138184420 138184305 5.630000e-35 159.0
25 TraesCS4A01G131400 chr2A 73.669 357 68 22 1062 1405 593443431 593443774 1.240000e-21 115.0
26 TraesCS4A01G131400 chr2A 89.247 93 8 2 2712 2803 686840770 686840861 1.240000e-21 115.0
27 TraesCS4A01G131400 chr5B 98.204 668 12 0 1 668 122450700 122450033 0.000000e+00 1168.0
28 TraesCS4A01G131400 chr3B 98.060 670 13 0 1 670 773548019 773548688 0.000000e+00 1166.0
29 TraesCS4A01G131400 chr7A 97.910 670 12 1 1 668 30715175 30714506 0.000000e+00 1158.0
30 TraesCS4A01G131400 chr7A 91.209 91 6 2 2714 2803 3014001 3014090 7.380000e-24 122.0
31 TraesCS4A01G131400 chr7A 88.406 69 6 1 4851 4917 727439386 727439318 1.250000e-11 82.4
32 TraesCS4A01G131400 chr7A 94.000 50 1 1 4848 4895 116644997 116644948 2.100000e-09 75.0
33 TraesCS4A01G131400 chr7A 83.582 67 8 2 4849 4912 20120309 20120375 5.870000e-05 60.2
34 TraesCS4A01G131400 chr7B 97.006 668 20 0 1 668 63494095 63494762 0.000000e+00 1123.0
35 TraesCS4A01G131400 chr7B 87.879 99 12 0 2709 2807 292378754 292378852 3.440000e-22 117.0
36 TraesCS4A01G131400 chr7B 85.185 108 14 2 2711 2817 636821323 636821217 5.750000e-20 110.0
37 TraesCS4A01G131400 chr7B 79.104 134 18 9 5288 5412 138661204 138661072 3.480000e-12 84.2
38 TraesCS4A01G131400 chr7B 92.308 39 3 0 5255 5293 465549297 465549335 7.600000e-04 56.5
39 TraesCS4A01G131400 chr2D 92.920 113 2 2 2822 2928 87030968 87031080 5.630000e-35 159.0
40 TraesCS4A01G131400 chr2D 90.722 97 9 0 2714 2810 31708399 31708495 4.410000e-26 130.0
41 TraesCS4A01G131400 chr2D 90.323 93 8 1 2716 2808 536428542 536428451 2.660000e-23 121.0
42 TraesCS4A01G131400 chr2D 73.669 338 65 20 1062 1387 449556399 449556074 5.750000e-20 110.0
43 TraesCS4A01G131400 chr2D 91.139 79 7 0 5318 5396 450377498 450377420 2.070000e-19 108.0
44 TraesCS4A01G131400 chr2D 96.970 33 1 0 5254 5286 46913392 46913360 7.600000e-04 56.5
45 TraesCS4A01G131400 chr7D 91.525 118 4 2 2821 2932 623644559 623644442 2.020000e-34 158.0
46 TraesCS4A01G131400 chr7D 90.244 123 6 2 2826 2942 169994202 169994324 7.280000e-34 156.0
47 TraesCS4A01G131400 chr7D 86.957 69 7 1 4851 4917 638465128 638465196 5.830000e-10 76.8
48 TraesCS4A01G131400 chr7D 96.875 32 1 0 5255 5286 511338503 511338534 3.000000e-03 54.7
49 TraesCS4A01G131400 chr6A 90.909 121 5 2 2833 2948 183352228 183352109 2.020000e-34 158.0
50 TraesCS4A01G131400 chr3D 91.525 118 4 2 2823 2934 308275021 308274904 2.020000e-34 158.0
51 TraesCS4A01G131400 chr3D 95.098 102 0 1 2832 2928 606889289 606889390 7.280000e-34 156.0
52 TraesCS4A01G131400 chr3D 92.308 91 6 1 2721 2811 123018568 123018657 1.590000e-25 128.0
53 TraesCS4A01G131400 chr3D 90.476 63 4 1 4853 4913 568170409 568170347 1.250000e-11 82.4
54 TraesCS4A01G131400 chr3D 72.993 274 56 14 1117 1384 9450891 9450630 4.510000e-11 80.5
55 TraesCS4A01G131400 chr3A 91.304 92 8 0 2722 2813 123306427 123306336 5.710000e-25 126.0
56 TraesCS4A01G131400 chr3A 91.398 93 7 1 2717 2809 499235581 499235672 5.710000e-25 126.0
57 TraesCS4A01G131400 chr3A 88.119 101 10 2 2722 2820 686127451 686127551 9.550000e-23 119.0
58 TraesCS4A01G131400 chr3A 91.139 79 7 0 5318 5396 291805562 291805484 2.070000e-19 108.0
59 TraesCS4A01G131400 chr1A 92.045 88 7 0 2722 2809 575557271 575557358 2.050000e-24 124.0
60 TraesCS4A01G131400 chr6B 91.765 85 3 3 5318 5399 130075301 130075218 1.240000e-21 115.0
61 TraesCS4A01G131400 chr6B 100.000 34 0 0 4920 4953 27995003 27994970 4.540000e-06 63.9
62 TraesCS4A01G131400 chr6B 92.857 42 1 2 5259 5298 128933019 128932978 5.870000e-05 60.2
63 TraesCS4A01G131400 chr6B 94.286 35 1 1 5259 5293 696531023 696531056 1.000000e-02 52.8
64 TraesCS4A01G131400 chr2B 87.255 102 12 1 2714 2814 220282429 220282530 1.240000e-21 115.0
65 TraesCS4A01G131400 chr2B 73.699 346 67 20 1062 1395 528829570 528829903 4.440000e-21 113.0
66 TraesCS4A01G131400 chr2B 84.685 111 16 1 2700 2809 774106537 774106647 5.750000e-20 110.0
67 TraesCS4A01G131400 chr2B 91.139 79 7 0 5318 5396 109974398 109974476 2.070000e-19 108.0
68 TraesCS4A01G131400 chr5D 92.308 78 6 0 5318 5395 150835645 150835568 1.600000e-20 111.0
69 TraesCS4A01G131400 chr5D 89.041 73 6 1 4847 4917 437569924 437569852 7.490000e-14 89.8
70 TraesCS4A01G131400 chr6D 90.588 85 4 3 5318 5399 57999722 57999639 5.750000e-20 110.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G131400 chr4A 175408623 175414051 5428 True 10026.00 10026 100.0000 1 5429 1 chr4A.!!$R2 5428
1 TraesCS4A01G131400 chr4D 303834670 303839280 4610 False 1568.20 3288 93.2136 684 5429 5 chr4D.!!$F3 4745
2 TraesCS4A01G131400 chr4B 378766523 378770831 4308 False 1578.75 2977 93.7580 668 4917 4 chr4B.!!$F1 4249
3 TraesCS4A01G131400 chr5A 536710579 536711249 670 True 1184.00 1184 98.5100 1 671 1 chr5A.!!$R2 670
4 TraesCS4A01G131400 chr1B 669919200 669919871 671 False 1175.00 1175 98.2140 1 672 1 chr1B.!!$F1 671
5 TraesCS4A01G131400 chr1B 418165547 418166219 672 True 1155.00 1155 97.6300 1 674 1 chr1B.!!$R1 673
6 TraesCS4A01G131400 chr2A 3581410 3582080 670 True 1173.00 1173 98.2120 1 671 1 chr2A.!!$R1 670
7 TraesCS4A01G131400 chr2A 40955896 40956563 667 True 1079.00 1079 95.8150 1 669 1 chr2A.!!$R2 668
8 TraesCS4A01G131400 chr5B 122450033 122450700 667 True 1168.00 1168 98.2040 1 668 1 chr5B.!!$R1 667
9 TraesCS4A01G131400 chr3B 773548019 773548688 669 False 1166.00 1166 98.0600 1 670 1 chr3B.!!$F1 669
10 TraesCS4A01G131400 chr7A 30714506 30715175 669 True 1158.00 1158 97.9100 1 668 1 chr7A.!!$R1 667
11 TraesCS4A01G131400 chr7B 63494095 63494762 667 False 1123.00 1123 97.0060 1 668 1 chr7B.!!$F1 667

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
760 763 0.179119 GTACTACGCACCCATCGCTT 60.179 55.000 0.00 0.00 0.0 4.68 F
876 908 0.327000 ATCCCTCCTCCCCACTTCAG 60.327 60.000 0.00 0.00 0.0 3.02 F
1982 2107 0.105039 ATGCTAAGTACGAGGCTGCC 59.895 55.000 11.65 11.65 0.0 4.85 F
2257 2383 1.285373 AGAGGACATCGACTACCCACT 59.715 52.381 0.00 0.00 0.0 4.00 F
2843 2976 0.246910 GACACTTCTCCCTCCGTTCC 59.753 60.000 0.00 0.00 0.0 3.62 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1612 1731 0.839946 CCTCCCCCATTGAGGTACAG 59.160 60.000 0.00 0.0 43.68 2.74 R
2824 2957 0.246910 GGAACGGAGGGAGAAGTGTC 59.753 60.000 0.00 0.0 0.00 3.67 R
2841 2974 1.274167 ACCTGCGACAAGTAATTCGGA 59.726 47.619 0.00 0.0 35.73 4.55 R
3531 3711 1.433534 CTCAGAAGAACCTGGAACGC 58.566 55.000 0.00 0.0 34.99 4.84 R
4818 5159 0.465460 TGGACACAAGTGGTTGCCTC 60.465 55.000 5.08 0.0 37.14 4.70 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 6.726733 TCTCCTCCTGATCATCTTCCTATA 57.273 41.667 0.00 0.00 0.00 1.31
99 100 3.988379 ATTTTCTGACGCTGCTTTCAA 57.012 38.095 0.00 0.00 0.00 2.69
125 126 9.588096 AAAGTTCAAAAGTTCCTGGTCTATTAT 57.412 29.630 0.00 0.00 0.00 1.28
200 201 7.692088 TCGTTTTGAAATCAATGTGCAAATTT 58.308 26.923 0.00 0.00 35.55 1.82
411 414 3.159472 TGGCTGATTTCTTCAAGCATGT 58.841 40.909 0.00 0.00 32.78 3.21
446 449 4.451900 ACCTCGAGTGTTTCACATTTCTT 58.548 39.130 12.31 0.00 36.74 2.52
509 512 5.843019 TCTTCATTCTAGGGTTGAACCTT 57.157 39.130 14.87 9.53 42.09 3.50
744 747 4.323868 CGAAAACAGTTCTCCATCTCGTAC 59.676 45.833 0.00 0.00 0.00 3.67
745 748 5.470047 AAAACAGTTCTCCATCTCGTACT 57.530 39.130 0.00 0.00 0.00 2.73
746 749 6.585695 AAAACAGTTCTCCATCTCGTACTA 57.414 37.500 0.00 0.00 0.00 1.82
747 750 5.564048 AACAGTTCTCCATCTCGTACTAC 57.436 43.478 0.00 0.00 0.00 2.73
760 763 0.179119 GTACTACGCACCCATCGCTT 60.179 55.000 0.00 0.00 0.00 4.68
876 908 0.327000 ATCCCTCCTCCCCACTTCAG 60.327 60.000 0.00 0.00 0.00 3.02
887 919 3.382832 ACTTCAGCTCGTCCCCCG 61.383 66.667 0.00 0.00 38.13 5.73
1096 1162 2.330372 CGGAACCTCGACCTCGACA 61.330 63.158 0.00 0.00 44.22 4.35
1284 1350 2.920912 GGGATCGCCGTGGGGATA 60.921 66.667 17.34 0.00 45.73 2.59
1439 1505 7.995463 TTTCGGTTTCAAAGATTAGGTTTTG 57.005 32.000 0.00 0.00 36.00 2.44
1440 1506 6.945938 TCGGTTTCAAAGATTAGGTTTTGA 57.054 33.333 0.00 0.00 40.46 2.69
1441 1507 7.336161 TCGGTTTCAAAGATTAGGTTTTGAA 57.664 32.000 7.96 7.96 46.06 2.69
1442 1508 7.947282 TCGGTTTCAAAGATTAGGTTTTGAAT 58.053 30.769 11.69 0.00 46.59 2.57
1443 1509 8.417884 TCGGTTTCAAAGATTAGGTTTTGAATT 58.582 29.630 11.69 0.00 46.59 2.17
1461 1527 2.270352 TTGATGCTTTTCGACCCAGT 57.730 45.000 0.00 0.00 0.00 4.00
1553 1672 1.535226 GCGGTGTTTCTGGTGGTTTTC 60.535 52.381 0.00 0.00 0.00 2.29
1560 1679 4.518970 TGTTTCTGGTGGTTTTCTAGATGC 59.481 41.667 0.00 0.00 0.00 3.91
1587 1706 9.768662 AAATTCATCATTTGGGTATTCTTATGC 57.231 29.630 0.00 0.00 33.47 3.14
1588 1707 6.899393 TCATCATTTGGGTATTCTTATGCC 57.101 37.500 0.00 0.00 35.92 4.40
1589 1708 6.613699 TCATCATTTGGGTATTCTTATGCCT 58.386 36.000 0.00 0.00 36.80 4.75
1590 1709 7.068702 TCATCATTTGGGTATTCTTATGCCTT 58.931 34.615 0.00 0.00 36.80 4.35
1591 1710 8.224025 TCATCATTTGGGTATTCTTATGCCTTA 58.776 33.333 0.00 0.00 36.80 2.69
1592 1711 8.517878 CATCATTTGGGTATTCTTATGCCTTAG 58.482 37.037 0.00 0.00 36.80 2.18
1593 1712 6.490040 TCATTTGGGTATTCTTATGCCTTAGC 59.510 38.462 0.00 0.00 36.80 3.09
1594 1713 5.646692 TTGGGTATTCTTATGCCTTAGCT 57.353 39.130 0.00 0.00 40.80 3.32
1595 1714 5.646692 TGGGTATTCTTATGCCTTAGCTT 57.353 39.130 0.00 0.00 40.80 3.74
1596 1715 6.757173 TGGGTATTCTTATGCCTTAGCTTA 57.243 37.500 0.00 0.00 40.80 3.09
1597 1716 6.769512 TGGGTATTCTTATGCCTTAGCTTAG 58.230 40.000 0.00 0.00 40.80 2.18
1598 1717 6.329197 TGGGTATTCTTATGCCTTAGCTTAGT 59.671 38.462 0.00 0.00 40.80 2.24
1599 1718 7.147373 TGGGTATTCTTATGCCTTAGCTTAGTT 60.147 37.037 0.00 0.00 40.80 2.24
1600 1719 7.720074 GGGTATTCTTATGCCTTAGCTTAGTTT 59.280 37.037 0.00 0.00 40.80 2.66
1601 1720 9.121658 GGTATTCTTATGCCTTAGCTTAGTTTT 57.878 33.333 0.00 0.00 40.80 2.43
1606 1725 9.547753 TCTTATGCCTTAGCTTAGTTTTATCTG 57.452 33.333 0.00 0.00 40.80 2.90
1607 1726 9.331282 CTTATGCCTTAGCTTAGTTTTATCTGT 57.669 33.333 0.00 0.00 40.80 3.41
1608 1727 9.681062 TTATGCCTTAGCTTAGTTTTATCTGTT 57.319 29.630 0.00 0.00 40.80 3.16
1609 1728 7.996098 TGCCTTAGCTTAGTTTTATCTGTTT 57.004 32.000 0.00 0.00 40.80 2.83
1610 1729 8.404107 TGCCTTAGCTTAGTTTTATCTGTTTT 57.596 30.769 0.00 0.00 40.80 2.43
1611 1730 8.856103 TGCCTTAGCTTAGTTTTATCTGTTTTT 58.144 29.630 0.00 0.00 40.80 1.94
1612 1731 9.343103 GCCTTAGCTTAGTTTTATCTGTTTTTC 57.657 33.333 0.00 0.00 35.50 2.29
1651 1770 2.160205 GACAGTTGCCCTTAAACCCTC 58.840 52.381 0.00 0.00 0.00 4.30
1982 2107 0.105039 ATGCTAAGTACGAGGCTGCC 59.895 55.000 11.65 11.65 0.00 4.85
2009 2134 2.031919 GGCCATGTCCGTGACACA 59.968 61.111 6.37 0.00 45.65 3.72
2106 2231 6.678900 GCAGGTAAAAAGCAACTCTGGATATG 60.679 42.308 0.00 0.00 0.00 1.78
2257 2383 1.285373 AGAGGACATCGACTACCCACT 59.715 52.381 0.00 0.00 0.00 4.00
2350 2476 2.790433 TGTGTTCAAGGATAACAGGGC 58.210 47.619 0.00 0.00 37.51 5.19
2729 2856 7.631377 GCATTTTAGTTTGCATGATACTCCCTT 60.631 37.037 0.00 0.00 38.72 3.95
2731 2858 3.891049 AGTTTGCATGATACTCCCTTCC 58.109 45.455 0.00 0.00 0.00 3.46
2802 2929 9.750783 ACGCTCTTATATTAGTTTATAGAGGGA 57.249 33.333 16.73 0.00 37.30 4.20
2834 2967 7.259290 TGTAAGATGTTTTTGACACTTCTCC 57.741 36.000 0.00 0.00 42.04 3.71
2835 2968 5.774498 AAGATGTTTTTGACACTTCTCCC 57.226 39.130 0.00 0.00 42.04 4.30
2836 2969 5.053978 AGATGTTTTTGACACTTCTCCCT 57.946 39.130 0.00 0.00 42.04 4.20
2837 2970 5.066593 AGATGTTTTTGACACTTCTCCCTC 58.933 41.667 0.00 0.00 42.04 4.30
2838 2971 3.551846 TGTTTTTGACACTTCTCCCTCC 58.448 45.455 0.00 0.00 32.00 4.30
2839 2972 2.543777 TTTTGACACTTCTCCCTCCG 57.456 50.000 0.00 0.00 0.00 4.63
2840 2973 1.420430 TTTGACACTTCTCCCTCCGT 58.580 50.000 0.00 0.00 0.00 4.69
2841 2974 1.420430 TTGACACTTCTCCCTCCGTT 58.580 50.000 0.00 0.00 0.00 4.44
2842 2975 0.966920 TGACACTTCTCCCTCCGTTC 59.033 55.000 0.00 0.00 0.00 3.95
2843 2976 0.246910 GACACTTCTCCCTCCGTTCC 59.753 60.000 0.00 0.00 0.00 3.62
2844 2977 1.215647 CACTTCTCCCTCCGTTCCG 59.784 63.158 0.00 0.00 0.00 4.30
2845 2978 1.076192 ACTTCTCCCTCCGTTCCGA 59.924 57.895 0.00 0.00 0.00 4.55
2846 2979 0.541296 ACTTCTCCCTCCGTTCCGAA 60.541 55.000 0.00 0.00 0.00 4.30
2847 2980 0.824759 CTTCTCCCTCCGTTCCGAAT 59.175 55.000 0.00 0.00 0.00 3.34
2848 2981 1.207329 CTTCTCCCTCCGTTCCGAATT 59.793 52.381 0.00 0.00 0.00 2.17
2849 2982 2.148446 TCTCCCTCCGTTCCGAATTA 57.852 50.000 0.00 0.00 0.00 1.40
2850 2983 1.753073 TCTCCCTCCGTTCCGAATTAC 59.247 52.381 0.00 0.00 0.00 1.89
2851 2984 1.755380 CTCCCTCCGTTCCGAATTACT 59.245 52.381 0.00 0.00 0.00 2.24
2852 2985 2.167900 CTCCCTCCGTTCCGAATTACTT 59.832 50.000 0.00 0.00 0.00 2.24
2853 2986 2.093869 TCCCTCCGTTCCGAATTACTTG 60.094 50.000 0.00 0.00 0.00 3.16
2854 2987 2.354403 CCCTCCGTTCCGAATTACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
2855 2988 2.928116 CCTCCGTTCCGAATTACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
2856 2989 2.597305 CTCCGTTCCGAATTACTTGTCG 59.403 50.000 0.00 0.00 37.01 4.35
2857 2990 1.060122 CCGTTCCGAATTACTTGTCGC 59.940 52.381 0.00 0.00 35.93 5.19
2858 2991 1.722464 CGTTCCGAATTACTTGTCGCA 59.278 47.619 0.00 0.00 35.93 5.10
2859 2992 2.222508 CGTTCCGAATTACTTGTCGCAG 60.223 50.000 0.00 0.00 35.93 5.18
2860 2993 2.004583 TCCGAATTACTTGTCGCAGG 57.995 50.000 0.00 0.00 35.93 4.85
2861 2994 1.274167 TCCGAATTACTTGTCGCAGGT 59.726 47.619 0.00 0.91 35.93 4.00
2862 2995 2.492881 TCCGAATTACTTGTCGCAGGTA 59.507 45.455 0.00 0.00 35.93 3.08
2863 2996 3.131577 TCCGAATTACTTGTCGCAGGTAT 59.868 43.478 3.46 0.00 35.93 2.73
2864 2997 3.245284 CCGAATTACTTGTCGCAGGTATG 59.755 47.826 3.46 0.00 35.93 2.39
2865 2998 3.245284 CGAATTACTTGTCGCAGGTATGG 59.755 47.826 3.46 0.00 0.00 2.74
2866 2999 4.439057 GAATTACTTGTCGCAGGTATGGA 58.561 43.478 3.46 0.00 0.00 3.41
2867 3000 4.689612 ATTACTTGTCGCAGGTATGGAT 57.310 40.909 3.46 0.00 0.00 3.41
2868 3001 2.315925 ACTTGTCGCAGGTATGGATG 57.684 50.000 0.00 0.00 0.00 3.51
2869 3002 1.555075 ACTTGTCGCAGGTATGGATGT 59.445 47.619 0.00 0.00 0.00 3.06
2870 3003 2.764010 ACTTGTCGCAGGTATGGATGTA 59.236 45.455 0.00 0.00 0.00 2.29
2871 3004 3.388024 ACTTGTCGCAGGTATGGATGTAT 59.612 43.478 0.00 0.00 0.00 2.29
2872 3005 3.660501 TGTCGCAGGTATGGATGTATC 57.339 47.619 0.00 0.00 0.00 2.24
2873 3006 3.230976 TGTCGCAGGTATGGATGTATCT 58.769 45.455 0.00 0.00 0.00 1.98
2874 3007 4.403734 TGTCGCAGGTATGGATGTATCTA 58.596 43.478 0.00 0.00 0.00 1.98
2875 3008 4.459337 TGTCGCAGGTATGGATGTATCTAG 59.541 45.833 0.00 0.00 0.00 2.43
2876 3009 4.700692 GTCGCAGGTATGGATGTATCTAGA 59.299 45.833 0.00 0.00 0.00 2.43
2877 3010 5.358442 GTCGCAGGTATGGATGTATCTAGAT 59.642 44.000 10.73 10.73 0.00 1.98
2878 3011 5.358160 TCGCAGGTATGGATGTATCTAGATG 59.642 44.000 15.79 0.00 0.00 2.90
2879 3012 5.126222 CGCAGGTATGGATGTATCTAGATGT 59.874 44.000 15.79 1.25 0.00 3.06
2880 3013 6.318900 CGCAGGTATGGATGTATCTAGATGTA 59.681 42.308 15.79 4.44 0.00 2.29
2881 3014 7.013750 CGCAGGTATGGATGTATCTAGATGTAT 59.986 40.741 15.79 9.11 0.00 2.29
2882 3015 8.700051 GCAGGTATGGATGTATCTAGATGTATT 58.300 37.037 15.79 0.00 0.00 1.89
2910 3043 8.546083 AGTTCTAGATACATCCATTTCTGAGT 57.454 34.615 0.00 0.00 0.00 3.41
2911 3044 9.647918 AGTTCTAGATACATCCATTTCTGAGTA 57.352 33.333 0.00 0.00 0.00 2.59
2917 3050 9.347240 AGATACATCCATTTCTGAGTAATTTGG 57.653 33.333 0.00 0.00 0.00 3.28
2918 3051 9.342308 GATACATCCATTTCTGAGTAATTTGGA 57.658 33.333 0.00 0.00 0.00 3.53
2919 3052 9.699410 ATACATCCATTTCTGAGTAATTTGGAA 57.301 29.630 0.00 0.00 0.00 3.53
2920 3053 7.830739 ACATCCATTTCTGAGTAATTTGGAAC 58.169 34.615 0.00 0.00 0.00 3.62
2921 3054 6.494893 TCCATTTCTGAGTAATTTGGAACG 57.505 37.500 0.00 0.00 0.00 3.95
2922 3055 5.414454 TCCATTTCTGAGTAATTTGGAACGG 59.586 40.000 0.00 0.00 0.00 4.44
2923 3056 5.414454 CCATTTCTGAGTAATTTGGAACGGA 59.586 40.000 0.00 0.00 0.00 4.69
2924 3057 6.403636 CCATTTCTGAGTAATTTGGAACGGAG 60.404 42.308 0.00 0.00 0.00 4.63
2925 3058 4.202245 TCTGAGTAATTTGGAACGGAGG 57.798 45.455 0.00 0.00 0.00 4.30
2926 3059 3.055385 TCTGAGTAATTTGGAACGGAGGG 60.055 47.826 0.00 0.00 0.00 4.30
2927 3060 2.907696 TGAGTAATTTGGAACGGAGGGA 59.092 45.455 0.00 0.00 0.00 4.20
2928 3061 3.328343 TGAGTAATTTGGAACGGAGGGAA 59.672 43.478 0.00 0.00 0.00 3.97
3034 3212 3.571571 TGCAGTACTAGTAAAGCGTGTG 58.428 45.455 17.88 5.07 0.00 3.82
3426 3606 3.747193 CATGTTAGCGTTGCTTTGTAGG 58.253 45.455 0.00 0.00 40.44 3.18
3531 3711 8.376889 ACCTTTACTTATTTTGCATTGTTTGG 57.623 30.769 0.00 0.00 0.00 3.28
3625 3805 4.088634 ACATACCACAATCAAACCAGCAT 58.911 39.130 0.00 0.00 0.00 3.79
3648 3828 4.019411 TCATCATGTGCTCTTACCTTCCAA 60.019 41.667 0.00 0.00 0.00 3.53
3683 3863 7.383843 TCTTTCAACAGAACAAAAGGTTTGAAC 59.616 33.333 7.68 1.88 40.63 3.18
3692 3872 4.173256 CAAAAGGTTTGAACTCGCAACTT 58.827 39.130 0.00 0.00 0.00 2.66
3714 3894 9.979578 AACTTGCTAAAAACAAATACATGATCA 57.020 25.926 0.00 0.00 0.00 2.92
3995 4175 8.349568 TGATCTGGTATAATAGTAATCTGCGT 57.650 34.615 0.00 0.00 0.00 5.24
4017 4197 3.838317 TGCCTGGTTCTAACTCACTACAT 59.162 43.478 0.00 0.00 0.00 2.29
4018 4198 4.184629 GCCTGGTTCTAACTCACTACATG 58.815 47.826 0.00 0.00 0.00 3.21
4078 4258 0.753262 GATGAGCTATGTGGTCGGGT 59.247 55.000 0.00 0.00 45.46 5.28
4255 4435 1.522668 CCATGACGGCTTCAAAGACA 58.477 50.000 0.00 0.00 37.92 3.41
4341 4521 2.433239 GGTAGCTTTATCGGGTGAAGGA 59.567 50.000 0.00 0.00 0.00 3.36
4467 4647 0.309922 GAACAGTGGAGACGACGACA 59.690 55.000 0.00 0.00 0.00 4.35
4614 4794 1.377333 GTAGCTGTGGGAAGTGGGC 60.377 63.158 0.00 0.00 0.00 5.36
4615 4795 1.538876 TAGCTGTGGGAAGTGGGCT 60.539 57.895 0.00 0.00 0.00 5.19
4811 5152 6.686484 ACCACTACATATCCATAGCATTCA 57.314 37.500 0.00 0.00 0.00 2.57
4895 5245 1.007479 ACATGGGGTGATGATTTGCCT 59.993 47.619 0.00 0.00 0.00 4.75
4953 5304 8.451748 GTTAGAAGTAAACTAGGGCAAAAGATG 58.548 37.037 0.00 0.00 0.00 2.90
4954 5305 5.946377 AGAAGTAAACTAGGGCAAAAGATGG 59.054 40.000 0.00 0.00 0.00 3.51
4955 5306 4.600062 AGTAAACTAGGGCAAAAGATGGG 58.400 43.478 0.00 0.00 0.00 4.00
4956 5307 2.532250 AACTAGGGCAAAAGATGGGG 57.468 50.000 0.00 0.00 0.00 4.96
4957 5308 1.681229 ACTAGGGCAAAAGATGGGGA 58.319 50.000 0.00 0.00 0.00 4.81
4958 5309 2.217776 ACTAGGGCAAAAGATGGGGAT 58.782 47.619 0.00 0.00 0.00 3.85
4959 5310 2.587307 ACTAGGGCAAAAGATGGGGATT 59.413 45.455 0.00 0.00 0.00 3.01
4960 5311 2.647846 AGGGCAAAAGATGGGGATTT 57.352 45.000 0.00 0.00 0.00 2.17
4961 5312 2.190538 AGGGCAAAAGATGGGGATTTG 58.809 47.619 0.00 0.00 0.00 2.32
4962 5313 1.210234 GGGCAAAAGATGGGGATTTGG 59.790 52.381 0.00 0.00 0.00 3.28
4963 5314 2.187100 GGCAAAAGATGGGGATTTGGA 58.813 47.619 0.00 0.00 0.00 3.53
4964 5315 2.773661 GGCAAAAGATGGGGATTTGGAT 59.226 45.455 0.00 0.00 0.00 3.41
4965 5316 3.181462 GGCAAAAGATGGGGATTTGGATC 60.181 47.826 0.00 0.00 0.00 3.36
4966 5317 3.451902 GCAAAAGATGGGGATTTGGATCA 59.548 43.478 0.00 0.00 33.77 2.92
4967 5318 4.102054 GCAAAAGATGGGGATTTGGATCAT 59.898 41.667 0.00 0.00 33.77 2.45
4968 5319 5.397109 GCAAAAGATGGGGATTTGGATCATT 60.397 40.000 0.00 0.00 33.77 2.57
4969 5320 6.655930 CAAAAGATGGGGATTTGGATCATTT 58.344 36.000 0.00 0.00 33.77 2.32
4970 5321 5.881923 AAGATGGGGATTTGGATCATTTG 57.118 39.130 0.00 0.00 33.77 2.32
4971 5322 3.644738 AGATGGGGATTTGGATCATTTGC 59.355 43.478 0.00 0.00 33.77 3.68
4972 5323 2.117865 TGGGGATTTGGATCATTTGCC 58.882 47.619 0.00 0.00 33.77 4.52
4973 5324 1.417517 GGGGATTTGGATCATTTGCCC 59.582 52.381 0.00 0.00 33.77 5.36
4974 5325 1.417517 GGGATTTGGATCATTTGCCCC 59.582 52.381 0.00 0.00 33.77 5.80
4975 5326 2.117865 GGATTTGGATCATTTGCCCCA 58.882 47.619 0.00 0.00 33.77 4.96
4976 5327 2.504996 GGATTTGGATCATTTGCCCCAA 59.495 45.455 0.00 0.00 36.94 4.12
4977 5328 3.136992 GGATTTGGATCATTTGCCCCAAT 59.863 43.478 0.00 0.00 38.34 3.16
4978 5329 4.385532 GGATTTGGATCATTTGCCCCAATT 60.386 41.667 0.00 0.00 38.34 2.32
4979 5330 4.654389 TTTGGATCATTTGCCCCAATTT 57.346 36.364 0.00 0.00 38.34 1.82
4980 5331 5.768980 TTTGGATCATTTGCCCCAATTTA 57.231 34.783 0.00 0.00 38.34 1.40
4981 5332 5.972327 TTGGATCATTTGCCCCAATTTAT 57.028 34.783 0.00 0.00 34.10 1.40
4982 5333 7.443302 TTTGGATCATTTGCCCCAATTTATA 57.557 32.000 0.00 0.00 38.34 0.98
4983 5334 7.630005 TTGGATCATTTGCCCCAATTTATAT 57.370 32.000 0.00 0.00 34.10 0.86
4984 5335 7.006865 TGGATCATTTGCCCCAATTTATATG 57.993 36.000 0.00 0.00 0.00 1.78
4985 5336 6.013553 TGGATCATTTGCCCCAATTTATATGG 60.014 38.462 0.00 0.00 37.71 2.74
4998 5349 6.875195 CCAATTTATATGGGGTGATGATTTGC 59.125 38.462 0.00 0.00 34.15 3.68
4999 5350 6.610075 ATTTATATGGGGTGATGATTTGCC 57.390 37.500 0.00 0.00 0.00 4.52
5000 5351 3.909427 ATATGGGGTGATGATTTGCCT 57.091 42.857 0.00 0.00 0.00 4.75
5001 5352 2.077687 ATGGGGTGATGATTTGCCTC 57.922 50.000 0.00 0.00 0.00 4.70
5002 5353 0.703488 TGGGGTGATGATTTGCCTCA 59.297 50.000 0.00 0.00 0.00 3.86
5003 5354 1.288633 TGGGGTGATGATTTGCCTCAT 59.711 47.619 0.00 0.00 38.57 2.90
5004 5355 2.292389 TGGGGTGATGATTTGCCTCATT 60.292 45.455 0.00 0.00 36.01 2.57
5005 5356 2.101917 GGGGTGATGATTTGCCTCATTG 59.898 50.000 0.00 0.00 36.01 2.82
5006 5357 2.762327 GGGTGATGATTTGCCTCATTGT 59.238 45.455 0.00 0.00 36.01 2.71
5007 5358 3.196254 GGGTGATGATTTGCCTCATTGTT 59.804 43.478 0.00 0.00 36.01 2.83
5008 5359 4.178540 GGTGATGATTTGCCTCATTGTTG 58.821 43.478 0.00 0.00 36.01 3.33
5009 5360 4.322198 GGTGATGATTTGCCTCATTGTTGT 60.322 41.667 0.00 0.00 36.01 3.32
5010 5361 4.624024 GTGATGATTTGCCTCATTGTTGTG 59.376 41.667 0.00 0.00 36.01 3.33
5011 5362 4.281435 TGATGATTTGCCTCATTGTTGTGT 59.719 37.500 0.00 0.00 36.01 3.72
5012 5363 4.241590 TGATTTGCCTCATTGTTGTGTC 57.758 40.909 0.00 0.00 0.00 3.67
5013 5364 3.635836 TGATTTGCCTCATTGTTGTGTCA 59.364 39.130 0.00 0.00 0.00 3.58
5014 5365 4.099113 TGATTTGCCTCATTGTTGTGTCAA 59.901 37.500 0.00 0.00 0.00 3.18
5015 5366 4.669206 TTTGCCTCATTGTTGTGTCAAT 57.331 36.364 0.00 0.00 38.38 2.57
5023 5374 4.808558 CATTGTTGTGTCAATGGTTAGGG 58.191 43.478 10.40 0.00 46.08 3.53
5024 5375 3.586470 TGTTGTGTCAATGGTTAGGGT 57.414 42.857 0.00 0.00 0.00 4.34
5025 5376 3.904717 TGTTGTGTCAATGGTTAGGGTT 58.095 40.909 0.00 0.00 0.00 4.11
5026 5377 5.050126 TGTTGTGTCAATGGTTAGGGTTA 57.950 39.130 0.00 0.00 0.00 2.85
5027 5378 5.636123 TGTTGTGTCAATGGTTAGGGTTAT 58.364 37.500 0.00 0.00 0.00 1.89
5028 5379 5.708230 TGTTGTGTCAATGGTTAGGGTTATC 59.292 40.000 0.00 0.00 0.00 1.75
5029 5380 5.506730 TGTGTCAATGGTTAGGGTTATCA 57.493 39.130 0.00 0.00 0.00 2.15
5030 5381 5.882040 TGTGTCAATGGTTAGGGTTATCAA 58.118 37.500 0.00 0.00 0.00 2.57
5031 5382 6.307776 TGTGTCAATGGTTAGGGTTATCAAA 58.692 36.000 0.00 0.00 0.00 2.69
5032 5383 6.432783 TGTGTCAATGGTTAGGGTTATCAAAG 59.567 38.462 0.00 0.00 0.00 2.77
5033 5384 6.433093 GTGTCAATGGTTAGGGTTATCAAAGT 59.567 38.462 0.00 0.00 0.00 2.66
5034 5385 7.608761 GTGTCAATGGTTAGGGTTATCAAAGTA 59.391 37.037 0.00 0.00 0.00 2.24
5035 5386 7.827236 TGTCAATGGTTAGGGTTATCAAAGTAG 59.173 37.037 0.00 0.00 0.00 2.57
5036 5387 8.044908 GTCAATGGTTAGGGTTATCAAAGTAGA 58.955 37.037 0.00 0.00 0.00 2.59
5037 5388 8.607713 TCAATGGTTAGGGTTATCAAAGTAGAA 58.392 33.333 0.00 0.00 0.00 2.10
5038 5389 8.893727 CAATGGTTAGGGTTATCAAAGTAGAAG 58.106 37.037 0.00 0.00 0.00 2.85
5039 5390 7.563724 TGGTTAGGGTTATCAAAGTAGAAGT 57.436 36.000 0.00 0.00 0.00 3.01
5040 5391 8.669055 TGGTTAGGGTTATCAAAGTAGAAGTA 57.331 34.615 0.00 0.00 0.00 2.24
5041 5392 9.103582 TGGTTAGGGTTATCAAAGTAGAAGTAA 57.896 33.333 0.00 0.00 0.00 2.24
5042 5393 9.948964 GGTTAGGGTTATCAAAGTAGAAGTAAA 57.051 33.333 0.00 0.00 0.00 2.01
5047 5398 9.597170 GGGTTATCAAAGTAGAAGTAAACTAGG 57.403 37.037 0.00 0.00 0.00 3.02
5048 5399 9.597170 GGTTATCAAAGTAGAAGTAAACTAGGG 57.403 37.037 0.00 0.00 0.00 3.53
5049 5400 9.096160 GTTATCAAAGTAGAAGTAAACTAGGGC 57.904 37.037 0.00 0.00 0.00 5.19
5050 5401 6.675413 TCAAAGTAGAAGTAAACTAGGGCA 57.325 37.500 0.00 0.00 0.00 5.36
5051 5402 7.069877 TCAAAGTAGAAGTAAACTAGGGCAA 57.930 36.000 0.00 0.00 0.00 4.52
5052 5403 7.511268 TCAAAGTAGAAGTAAACTAGGGCAAA 58.489 34.615 0.00 0.00 0.00 3.68
5053 5404 7.994334 TCAAAGTAGAAGTAAACTAGGGCAAAA 59.006 33.333 0.00 0.00 0.00 2.44
5054 5405 7.981102 AAGTAGAAGTAAACTAGGGCAAAAG 57.019 36.000 0.00 0.00 0.00 2.27
5055 5406 7.312415 AGTAGAAGTAAACTAGGGCAAAAGA 57.688 36.000 0.00 0.00 0.00 2.52
5056 5407 7.919151 AGTAGAAGTAAACTAGGGCAAAAGAT 58.081 34.615 0.00 0.00 0.00 2.40
5057 5408 8.383947 AGTAGAAGTAAACTAGGGCAAAAGATT 58.616 33.333 0.00 0.00 0.00 2.40
5075 5426 6.786967 AAGATTCAATTTCTTCATCCCTGG 57.213 37.500 0.00 0.00 0.00 4.45
5093 5444 1.754745 GCCTGGACAAGACCACTCA 59.245 57.895 0.00 0.00 35.91 3.41
5094 5445 0.321122 GCCTGGACAAGACCACTCAG 60.321 60.000 0.00 0.00 35.91 3.35
5095 5446 1.342074 CCTGGACAAGACCACTCAGA 58.658 55.000 0.00 0.00 35.91 3.27
5096 5447 1.905215 CCTGGACAAGACCACTCAGAT 59.095 52.381 0.00 0.00 35.91 2.90
5138 5489 3.953775 CCACCCCCACTTCAGCGT 61.954 66.667 0.00 0.00 0.00 5.07
5153 5504 0.251354 AGCGTCATGAGGTGCTTCAT 59.749 50.000 16.27 0.00 38.30 2.57
5165 5516 2.821969 GGTGCTTCATGTTCTTGGTCAT 59.178 45.455 0.00 0.00 0.00 3.06
5180 5531 2.032634 TCATGCGGGTGCTCGTTTC 61.033 57.895 0.00 0.00 43.34 2.78
5193 5544 2.372690 CGTTTCTGTCTCGGGTGCG 61.373 63.158 0.00 0.00 0.00 5.34
5239 5590 4.049186 GCGATGACCGATAGTTTGTACAT 58.951 43.478 0.00 0.00 41.76 2.29
5247 5598 6.100004 ACCGATAGTTTGTACATTGTCTCTG 58.900 40.000 0.00 0.00 0.00 3.35
5286 5637 7.563888 ACTCCCTCCGTTTTTAAATATAAGC 57.436 36.000 0.00 0.00 0.00 3.09
5292 5643 9.511144 CCTCCGTTTTTAAATATAAGCGATTTT 57.489 29.630 0.00 0.00 0.00 1.82
5327 5696 9.776158 CTACACACGGATTATATAGATTCACTC 57.224 37.037 0.00 0.00 0.00 3.51
5345 5714 7.558161 TTCACTCATTTTGCTCCATATGTAG 57.442 36.000 1.24 0.00 0.00 2.74
5346 5715 6.653020 TCACTCATTTTGCTCCATATGTAGT 58.347 36.000 1.24 0.00 0.00 2.73
5388 5757 8.494016 AAAAGGTCTTATATTTCAGAACGGAG 57.506 34.615 0.00 0.00 31.43 4.63
5405 5774 4.287552 ACGGAGGGAATATGAGTTAGTGT 58.712 43.478 0.00 0.00 0.00 3.55
5408 5777 5.395324 CGGAGGGAATATGAGTTAGTGTTGT 60.395 44.000 0.00 0.00 0.00 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 2.228343 CGACTTAAGAGTTCGACCCTGT 59.772 50.000 10.09 0.00 35.88 4.00
78 79 3.988379 TGAAAGCAGCGTCAGAAAATT 57.012 38.095 0.00 0.00 0.00 1.82
99 100 7.898014 AATAGACCAGGAACTTTTGAACTTT 57.102 32.000 0.00 0.00 34.60 2.66
411 414 2.143122 CTCGAGGTTGCAAGCTGTTAA 58.857 47.619 34.11 15.43 36.78 2.01
446 449 4.099266 GTGTGCTATGCCATTAATTTCCCA 59.901 41.667 0.00 0.00 0.00 4.37
744 747 1.752501 CGAAAGCGATGGGTGCGTAG 61.753 60.000 0.00 0.00 40.82 3.51
745 748 1.807981 CGAAAGCGATGGGTGCGTA 60.808 57.895 0.00 0.00 40.82 4.42
746 749 3.118454 CGAAAGCGATGGGTGCGT 61.118 61.111 0.00 0.00 40.82 5.24
760 763 3.402095 TTGTGTTGGGTCCGGCGAA 62.402 57.895 9.30 0.00 0.00 4.70
896 928 0.956633 GAACGGAAGGGTGGGTTTTC 59.043 55.000 0.00 0.00 0.00 2.29
998 1064 0.034059 CCTCCCGTACATGCTCATCC 59.966 60.000 0.00 0.00 0.00 3.51
1277 1343 3.488569 CGGCCTTGGCTATCCCCA 61.489 66.667 11.71 0.00 0.00 4.96
1439 1505 3.191371 ACTGGGTCGAAAAGCATCAATTC 59.809 43.478 0.00 0.00 0.00 2.17
1440 1506 3.057315 CACTGGGTCGAAAAGCATCAATT 60.057 43.478 0.00 0.00 0.00 2.32
1441 1507 2.489329 CACTGGGTCGAAAAGCATCAAT 59.511 45.455 0.00 0.00 0.00 2.57
1442 1508 1.879380 CACTGGGTCGAAAAGCATCAA 59.121 47.619 0.00 0.00 0.00 2.57
1443 1509 1.522668 CACTGGGTCGAAAAGCATCA 58.477 50.000 0.00 0.00 0.00 3.07
1461 1527 6.729690 AAATCAGAACCAAAAGAACATCCA 57.270 33.333 0.00 0.00 0.00 3.41
1582 1701 9.681062 AACAGATAAAACTAAGCTAAGGCATAA 57.319 29.630 0.00 0.00 41.70 1.90
1584 1703 8.581253 AAACAGATAAAACTAAGCTAAGGCAT 57.419 30.769 0.00 0.00 41.70 4.40
1585 1704 7.996098 AAACAGATAAAACTAAGCTAAGGCA 57.004 32.000 0.00 0.00 41.70 4.75
1586 1705 9.343103 GAAAAACAGATAAAACTAAGCTAAGGC 57.657 33.333 0.00 0.00 39.06 4.35
1592 1711 9.608617 GGTACAGAAAAACAGATAAAACTAAGC 57.391 33.333 0.00 0.00 0.00 3.09
1596 1715 8.974060 TGAGGTACAGAAAAACAGATAAAACT 57.026 30.769 0.00 0.00 0.00 2.66
1599 1718 8.792633 CCATTGAGGTACAGAAAAACAGATAAA 58.207 33.333 0.00 0.00 0.00 1.40
1600 1719 7.393234 CCCATTGAGGTACAGAAAAACAGATAA 59.607 37.037 0.00 0.00 34.66 1.75
1601 1720 6.884295 CCCATTGAGGTACAGAAAAACAGATA 59.116 38.462 0.00 0.00 34.66 1.98
1602 1721 5.711976 CCCATTGAGGTACAGAAAAACAGAT 59.288 40.000 0.00 0.00 34.66 2.90
1603 1722 5.070001 CCCATTGAGGTACAGAAAAACAGA 58.930 41.667 0.00 0.00 34.66 3.41
1604 1723 4.218417 CCCCATTGAGGTACAGAAAAACAG 59.782 45.833 0.00 0.00 34.66 3.16
1605 1724 4.148838 CCCCATTGAGGTACAGAAAAACA 58.851 43.478 0.00 0.00 34.66 2.83
1606 1725 3.509967 CCCCCATTGAGGTACAGAAAAAC 59.490 47.826 0.00 0.00 34.66 2.43
1607 1726 3.399644 TCCCCCATTGAGGTACAGAAAAA 59.600 43.478 0.00 0.00 34.66 1.94
1608 1727 2.990284 TCCCCCATTGAGGTACAGAAAA 59.010 45.455 0.00 0.00 34.66 2.29
1609 1728 2.576191 CTCCCCCATTGAGGTACAGAAA 59.424 50.000 0.00 0.00 34.66 2.52
1610 1729 2.196595 CTCCCCCATTGAGGTACAGAA 58.803 52.381 0.00 0.00 34.66 3.02
1611 1730 1.625228 CCTCCCCCATTGAGGTACAGA 60.625 57.143 0.00 0.00 43.68 3.41
1612 1731 0.839946 CCTCCCCCATTGAGGTACAG 59.160 60.000 0.00 0.00 43.68 2.74
1613 1732 3.021356 CCTCCCCCATTGAGGTACA 57.979 57.895 0.00 0.00 43.68 2.90
1620 1739 0.967380 GCAACTGTCCTCCCCCATTG 60.967 60.000 0.00 0.00 0.00 2.82
1651 1770 1.583784 AATGGATCTGGTGGGTGGGG 61.584 60.000 0.00 0.00 0.00 4.96
1982 2107 2.035626 ACATGGCCAAGTTCCCCG 59.964 61.111 10.96 0.00 0.00 5.73
2106 2231 3.758554 AGGAACTTTGTGTCCATGTATGC 59.241 43.478 0.00 0.00 27.25 3.14
2257 2383 2.137528 TGGCACTCGGTGACTGGAA 61.138 57.895 10.62 0.00 42.96 3.53
2350 2476 3.746492 GTGTAACAGCTTGTGGGAGTAAG 59.254 47.826 0.00 0.00 36.32 2.34
2744 2871 9.485206 TCACTAAAGTAGTAATCCAAACACTTC 57.515 33.333 0.00 0.00 37.23 3.01
2753 2880 8.966194 GCGTTTAGATCACTAAAGTAGTAATCC 58.034 37.037 0.00 0.00 45.42 3.01
2757 2884 8.503458 AGAGCGTTTAGATCACTAAAGTAGTA 57.497 34.615 0.00 0.00 45.42 1.82
2824 2957 0.246910 GGAACGGAGGGAGAAGTGTC 59.753 60.000 0.00 0.00 0.00 3.67
2825 2958 2.363297 GGAACGGAGGGAGAAGTGT 58.637 57.895 0.00 0.00 0.00 3.55
2839 2972 2.093783 CCTGCGACAAGTAATTCGGAAC 59.906 50.000 0.00 0.00 35.02 3.62
2840 2973 2.289195 ACCTGCGACAAGTAATTCGGAA 60.289 45.455 0.00 0.00 35.02 4.30
2841 2974 1.274167 ACCTGCGACAAGTAATTCGGA 59.726 47.619 0.00 0.00 35.73 4.55
2842 2975 1.722011 ACCTGCGACAAGTAATTCGG 58.278 50.000 0.00 0.00 35.73 4.30
2843 2976 3.245284 CCATACCTGCGACAAGTAATTCG 59.755 47.826 0.00 0.00 38.31 3.34
2844 2977 4.439057 TCCATACCTGCGACAAGTAATTC 58.561 43.478 0.00 0.00 0.00 2.17
2845 2978 4.481368 TCCATACCTGCGACAAGTAATT 57.519 40.909 0.00 0.00 0.00 1.40
2846 2979 4.141711 ACATCCATACCTGCGACAAGTAAT 60.142 41.667 0.00 0.00 0.00 1.89
2847 2980 3.196901 ACATCCATACCTGCGACAAGTAA 59.803 43.478 0.00 0.00 0.00 2.24
2848 2981 2.764010 ACATCCATACCTGCGACAAGTA 59.236 45.455 0.00 0.00 0.00 2.24
2849 2982 1.555075 ACATCCATACCTGCGACAAGT 59.445 47.619 0.00 0.00 0.00 3.16
2850 2983 2.315925 ACATCCATACCTGCGACAAG 57.684 50.000 0.00 0.00 0.00 3.16
2851 2984 3.641436 AGATACATCCATACCTGCGACAA 59.359 43.478 0.00 0.00 0.00 3.18
2852 2985 3.230976 AGATACATCCATACCTGCGACA 58.769 45.455 0.00 0.00 0.00 4.35
2853 2986 3.944055 AGATACATCCATACCTGCGAC 57.056 47.619 0.00 0.00 0.00 5.19
2854 2987 4.918588 TCTAGATACATCCATACCTGCGA 58.081 43.478 0.00 0.00 0.00 5.10
2855 2988 5.126222 ACATCTAGATACATCCATACCTGCG 59.874 44.000 4.54 0.00 0.00 5.18
2856 2989 6.537453 ACATCTAGATACATCCATACCTGC 57.463 41.667 4.54 0.00 0.00 4.85
2884 3017 9.647918 ACTCAGAAATGGATGTATCTAGAACTA 57.352 33.333 0.00 0.00 0.00 2.24
2885 3018 8.546083 ACTCAGAAATGGATGTATCTAGAACT 57.454 34.615 0.00 0.00 0.00 3.01
2891 3024 9.347240 CCAAATTACTCAGAAATGGATGTATCT 57.653 33.333 0.00 0.00 0.00 1.98
2892 3025 9.342308 TCCAAATTACTCAGAAATGGATGTATC 57.658 33.333 0.00 0.00 30.90 2.24
2893 3026 9.699410 TTCCAAATTACTCAGAAATGGATGTAT 57.301 29.630 0.00 0.00 35.57 2.29
2894 3027 8.956426 GTTCCAAATTACTCAGAAATGGATGTA 58.044 33.333 0.00 0.00 35.57 2.29
2895 3028 7.362056 CGTTCCAAATTACTCAGAAATGGATGT 60.362 37.037 0.00 0.00 35.57 3.06
2896 3029 6.968904 CGTTCCAAATTACTCAGAAATGGATG 59.031 38.462 0.00 0.00 35.57 3.51
2897 3030 6.095440 CCGTTCCAAATTACTCAGAAATGGAT 59.905 38.462 0.00 0.00 35.57 3.41
2898 3031 5.414454 CCGTTCCAAATTACTCAGAAATGGA 59.586 40.000 0.00 0.00 33.88 3.41
2899 3032 5.414454 TCCGTTCCAAATTACTCAGAAATGG 59.586 40.000 0.00 0.00 0.00 3.16
2900 3033 6.403636 CCTCCGTTCCAAATTACTCAGAAATG 60.404 42.308 0.00 0.00 0.00 2.32
2901 3034 5.648092 CCTCCGTTCCAAATTACTCAGAAAT 59.352 40.000 0.00 0.00 0.00 2.17
2902 3035 5.001232 CCTCCGTTCCAAATTACTCAGAAA 58.999 41.667 0.00 0.00 0.00 2.52
2903 3036 4.564821 CCCTCCGTTCCAAATTACTCAGAA 60.565 45.833 0.00 0.00 0.00 3.02
2904 3037 3.055385 CCCTCCGTTCCAAATTACTCAGA 60.055 47.826 0.00 0.00 0.00 3.27
2905 3038 3.055385 TCCCTCCGTTCCAAATTACTCAG 60.055 47.826 0.00 0.00 0.00 3.35
2906 3039 2.907696 TCCCTCCGTTCCAAATTACTCA 59.092 45.455 0.00 0.00 0.00 3.41
2907 3040 3.622166 TCCCTCCGTTCCAAATTACTC 57.378 47.619 0.00 0.00 0.00 2.59
2908 3041 4.586306 ATTCCCTCCGTTCCAAATTACT 57.414 40.909 0.00 0.00 0.00 2.24
2909 3042 5.065602 GTGTATTCCCTCCGTTCCAAATTAC 59.934 44.000 0.00 0.00 0.00 1.89
2910 3043 5.045432 AGTGTATTCCCTCCGTTCCAAATTA 60.045 40.000 0.00 0.00 0.00 1.40
2911 3044 4.014406 GTGTATTCCCTCCGTTCCAAATT 58.986 43.478 0.00 0.00 0.00 1.82
2912 3045 3.265995 AGTGTATTCCCTCCGTTCCAAAT 59.734 43.478 0.00 0.00 0.00 2.32
2913 3046 2.640826 AGTGTATTCCCTCCGTTCCAAA 59.359 45.455 0.00 0.00 0.00 3.28
2914 3047 2.262637 AGTGTATTCCCTCCGTTCCAA 58.737 47.619 0.00 0.00 0.00 3.53
2915 3048 1.946984 AGTGTATTCCCTCCGTTCCA 58.053 50.000 0.00 0.00 0.00 3.53
2916 3049 3.294214 TCTAGTGTATTCCCTCCGTTCC 58.706 50.000 0.00 0.00 0.00 3.62
2917 3050 3.952967 ACTCTAGTGTATTCCCTCCGTTC 59.047 47.826 0.00 0.00 0.00 3.95
2918 3051 3.952967 GACTCTAGTGTATTCCCTCCGTT 59.047 47.826 0.00 0.00 0.00 4.44
2919 3052 3.053842 TGACTCTAGTGTATTCCCTCCGT 60.054 47.826 0.00 0.00 0.00 4.69
2920 3053 3.552875 TGACTCTAGTGTATTCCCTCCG 58.447 50.000 0.00 0.00 0.00 4.63
2921 3054 5.934402 TTTGACTCTAGTGTATTCCCTCC 57.066 43.478 0.00 0.00 0.00 4.30
2922 3055 6.594547 GGTTTTTGACTCTAGTGTATTCCCTC 59.405 42.308 0.00 0.00 0.00 4.30
2923 3056 6.473758 GGTTTTTGACTCTAGTGTATTCCCT 58.526 40.000 0.00 0.00 0.00 4.20
2924 3057 5.350640 CGGTTTTTGACTCTAGTGTATTCCC 59.649 44.000 0.00 0.00 0.00 3.97
2925 3058 5.930569 ACGGTTTTTGACTCTAGTGTATTCC 59.069 40.000 0.00 0.00 0.00 3.01
2926 3059 6.867293 AGACGGTTTTTGACTCTAGTGTATTC 59.133 38.462 0.00 0.00 0.00 1.75
2927 3060 6.645415 CAGACGGTTTTTGACTCTAGTGTATT 59.355 38.462 0.00 0.00 0.00 1.89
2928 3061 6.015688 TCAGACGGTTTTTGACTCTAGTGTAT 60.016 38.462 0.00 0.00 0.00 2.29
3034 3212 3.074412 CACATGGTAGGACAAGTTGACC 58.926 50.000 15.52 15.52 32.33 4.02
3072 3250 3.424703 TCGTAAGTGCCCTGTACTTAGT 58.575 45.455 5.24 0.00 40.29 2.24
3271 3451 6.741992 AAACATCAGATTCTGCGAATAACA 57.258 33.333 8.89 0.00 0.00 2.41
3381 3561 5.468746 GCTGTATGACACCTAAACTGAAACA 59.531 40.000 0.00 0.00 0.00 2.83
3531 3711 1.433534 CTCAGAAGAACCTGGAACGC 58.566 55.000 0.00 0.00 34.99 4.84
3614 3794 2.164827 GCACATGATGATGCTGGTTTGA 59.835 45.455 0.00 0.00 38.84 2.69
3625 3805 3.519107 TGGAAGGTAAGAGCACATGATGA 59.481 43.478 0.00 0.00 0.00 2.92
3641 3821 9.415544 CTGTTGAAAGATCTAAAATTTGGAAGG 57.584 33.333 0.00 0.00 0.00 3.46
3662 3842 5.286082 CGAGTTCAAACCTTTTGTTCTGTTG 59.714 40.000 0.00 0.00 35.67 3.33
3692 3872 8.121305 AGGTGATCATGTATTTGTTTTTAGCA 57.879 30.769 0.00 0.00 0.00 3.49
3713 3893 6.764308 ACTGTCCAATGAATTCAATAGGTG 57.236 37.500 13.09 10.98 0.00 4.00
3714 3894 7.781324 AAACTGTCCAATGAATTCAATAGGT 57.219 32.000 13.09 0.00 0.00 3.08
3729 3909 6.939730 TGCAAGATAATTCAGTAAACTGTCCA 59.060 34.615 9.81 0.00 44.12 4.02
3995 4175 3.236047 TGTAGTGAGTTAGAACCAGGCA 58.764 45.455 0.00 0.00 0.00 4.75
4017 4197 4.456280 GATGTACTCCATCTGACACACA 57.544 45.455 0.00 0.00 45.50 3.72
4078 4258 2.942306 GCTTGGGGTAATGCTTTCCGTA 60.942 50.000 0.00 0.00 0.00 4.02
4341 4521 2.487265 GGTGTTCTTGTCCACTCCATGT 60.487 50.000 0.00 0.00 0.00 3.21
4818 5159 0.465460 TGGACACAAGTGGTTGCCTC 60.465 55.000 5.08 0.00 37.14 4.70
4941 5292 2.190538 CAAATCCCCATCTTTTGCCCT 58.809 47.619 0.00 0.00 0.00 5.19
4953 5304 1.417517 GGGCAAATGATCCAAATCCCC 59.582 52.381 0.00 0.00 0.00 4.81
4954 5305 1.417517 GGGGCAAATGATCCAAATCCC 59.582 52.381 0.00 0.00 0.00 3.85
4955 5306 2.117865 TGGGGCAAATGATCCAAATCC 58.882 47.619 0.00 0.00 0.00 3.01
4956 5307 3.910568 TTGGGGCAAATGATCCAAATC 57.089 42.857 5.73 0.00 36.46 2.17
4957 5308 4.866327 AATTGGGGCAAATGATCCAAAT 57.134 36.364 10.43 2.43 41.80 2.32
4958 5309 4.654389 AAATTGGGGCAAATGATCCAAA 57.346 36.364 10.43 0.48 41.80 3.28
4959 5310 5.972327 ATAAATTGGGGCAAATGATCCAA 57.028 34.783 9.29 9.29 42.55 3.53
4960 5311 6.013553 CCATATAAATTGGGGCAAATGATCCA 60.014 38.462 0.00 0.00 0.00 3.41
4961 5312 6.408869 CCATATAAATTGGGGCAAATGATCC 58.591 40.000 0.00 0.00 0.00 3.36
4973 5324 6.875195 GCAAATCATCACCCCATATAAATTGG 59.125 38.462 0.00 0.00 0.00 3.16
4974 5325 6.875195 GGCAAATCATCACCCCATATAAATTG 59.125 38.462 0.00 0.00 0.00 2.32
4975 5326 6.788957 AGGCAAATCATCACCCCATATAAATT 59.211 34.615 0.00 0.00 0.00 1.82
4976 5327 6.325352 AGGCAAATCATCACCCCATATAAAT 58.675 36.000 0.00 0.00 0.00 1.40
4977 5328 5.714863 AGGCAAATCATCACCCCATATAAA 58.285 37.500 0.00 0.00 0.00 1.40
4978 5329 5.163001 TGAGGCAAATCATCACCCCATATAA 60.163 40.000 0.00 0.00 29.45 0.98
4979 5330 4.353489 TGAGGCAAATCATCACCCCATATA 59.647 41.667 0.00 0.00 29.45 0.86
4980 5331 3.140707 TGAGGCAAATCATCACCCCATAT 59.859 43.478 0.00 0.00 29.45 1.78
4981 5332 2.513317 TGAGGCAAATCATCACCCCATA 59.487 45.455 0.00 0.00 29.45 2.74
4982 5333 1.288633 TGAGGCAAATCATCACCCCAT 59.711 47.619 0.00 0.00 29.45 4.00
4983 5334 0.703488 TGAGGCAAATCATCACCCCA 59.297 50.000 0.00 0.00 29.45 4.96
4984 5335 2.077687 ATGAGGCAAATCATCACCCC 57.922 50.000 0.00 0.00 38.42 4.95
4985 5336 2.762327 ACAATGAGGCAAATCATCACCC 59.238 45.455 0.00 0.00 39.00 4.61
4986 5337 4.178540 CAACAATGAGGCAAATCATCACC 58.821 43.478 0.00 0.00 39.00 4.02
4987 5338 4.624024 CACAACAATGAGGCAAATCATCAC 59.376 41.667 0.00 0.00 39.00 3.06
4988 5339 4.281435 ACACAACAATGAGGCAAATCATCA 59.719 37.500 0.00 0.00 39.00 3.07
4989 5340 4.813027 ACACAACAATGAGGCAAATCATC 58.187 39.130 0.00 0.00 39.00 2.92
4990 5341 4.281435 TGACACAACAATGAGGCAAATCAT 59.719 37.500 0.00 0.00 41.72 2.45
4991 5342 3.635836 TGACACAACAATGAGGCAAATCA 59.364 39.130 0.00 0.00 31.73 2.57
4992 5343 4.241590 TGACACAACAATGAGGCAAATC 57.758 40.909 0.00 0.00 31.73 2.17
4993 5344 4.669206 TTGACACAACAATGAGGCAAAT 57.331 36.364 0.00 0.00 41.41 2.32
4994 5345 4.669206 ATTGACACAACAATGAGGCAAA 57.331 36.364 0.00 0.00 46.20 3.68
5002 5353 4.479158 ACCCTAACCATTGACACAACAAT 58.521 39.130 0.00 0.00 40.50 2.71
5003 5354 3.904717 ACCCTAACCATTGACACAACAA 58.095 40.909 0.00 0.00 0.00 2.83
5004 5355 3.586470 ACCCTAACCATTGACACAACA 57.414 42.857 0.00 0.00 0.00 3.33
5005 5356 5.708230 TGATAACCCTAACCATTGACACAAC 59.292 40.000 0.00 0.00 0.00 3.32
5006 5357 5.882040 TGATAACCCTAACCATTGACACAA 58.118 37.500 0.00 0.00 0.00 3.33
5007 5358 5.506730 TGATAACCCTAACCATTGACACA 57.493 39.130 0.00 0.00 0.00 3.72
5008 5359 6.433093 ACTTTGATAACCCTAACCATTGACAC 59.567 38.462 0.00 0.00 0.00 3.67
5009 5360 6.548321 ACTTTGATAACCCTAACCATTGACA 58.452 36.000 0.00 0.00 0.00 3.58
5010 5361 8.044908 TCTACTTTGATAACCCTAACCATTGAC 58.955 37.037 0.00 0.00 0.00 3.18
5011 5362 8.153221 TCTACTTTGATAACCCTAACCATTGA 57.847 34.615 0.00 0.00 0.00 2.57
5012 5363 8.801882 TTCTACTTTGATAACCCTAACCATTG 57.198 34.615 0.00 0.00 0.00 2.82
5013 5364 8.612145 ACTTCTACTTTGATAACCCTAACCATT 58.388 33.333 0.00 0.00 0.00 3.16
5014 5365 8.159229 ACTTCTACTTTGATAACCCTAACCAT 57.841 34.615 0.00 0.00 0.00 3.55
5015 5366 7.563724 ACTTCTACTTTGATAACCCTAACCA 57.436 36.000 0.00 0.00 0.00 3.67
5016 5367 9.948964 TTTACTTCTACTTTGATAACCCTAACC 57.051 33.333 0.00 0.00 0.00 2.85
5021 5372 9.597170 CCTAGTTTACTTCTACTTTGATAACCC 57.403 37.037 0.00 0.00 0.00 4.11
5022 5373 9.597170 CCCTAGTTTACTTCTACTTTGATAACC 57.403 37.037 0.00 0.00 0.00 2.85
5023 5374 9.096160 GCCCTAGTTTACTTCTACTTTGATAAC 57.904 37.037 0.00 0.00 0.00 1.89
5024 5375 8.818860 TGCCCTAGTTTACTTCTACTTTGATAA 58.181 33.333 0.00 0.00 0.00 1.75
5025 5376 8.370266 TGCCCTAGTTTACTTCTACTTTGATA 57.630 34.615 0.00 0.00 0.00 2.15
5026 5377 7.253905 TGCCCTAGTTTACTTCTACTTTGAT 57.746 36.000 0.00 0.00 0.00 2.57
5027 5378 6.675413 TGCCCTAGTTTACTTCTACTTTGA 57.325 37.500 0.00 0.00 0.00 2.69
5028 5379 7.739498 TTTGCCCTAGTTTACTTCTACTTTG 57.261 36.000 0.00 0.00 0.00 2.77
5029 5380 8.215736 TCTTTTGCCCTAGTTTACTTCTACTTT 58.784 33.333 0.00 0.00 0.00 2.66
5030 5381 7.742767 TCTTTTGCCCTAGTTTACTTCTACTT 58.257 34.615 0.00 0.00 0.00 2.24
5031 5382 7.312415 TCTTTTGCCCTAGTTTACTTCTACT 57.688 36.000 0.00 0.00 0.00 2.57
5032 5383 8.563123 AATCTTTTGCCCTAGTTTACTTCTAC 57.437 34.615 0.00 0.00 0.00 2.59
5033 5384 8.380099 TGAATCTTTTGCCCTAGTTTACTTCTA 58.620 33.333 0.00 0.00 0.00 2.10
5034 5385 7.231467 TGAATCTTTTGCCCTAGTTTACTTCT 58.769 34.615 0.00 0.00 0.00 2.85
5035 5386 7.448748 TGAATCTTTTGCCCTAGTTTACTTC 57.551 36.000 0.00 0.00 0.00 3.01
5036 5387 7.833285 TTGAATCTTTTGCCCTAGTTTACTT 57.167 32.000 0.00 0.00 0.00 2.24
5037 5388 8.422577 AATTGAATCTTTTGCCCTAGTTTACT 57.577 30.769 0.00 0.00 0.00 2.24
5038 5389 9.140286 GAAATTGAATCTTTTGCCCTAGTTTAC 57.860 33.333 0.00 0.00 0.00 2.01
5039 5390 9.088987 AGAAATTGAATCTTTTGCCCTAGTTTA 57.911 29.630 0.00 0.00 0.00 2.01
5040 5391 7.966812 AGAAATTGAATCTTTTGCCCTAGTTT 58.033 30.769 0.00 0.00 0.00 2.66
5041 5392 7.544804 AGAAATTGAATCTTTTGCCCTAGTT 57.455 32.000 0.00 0.00 0.00 2.24
5042 5393 7.233348 TGAAGAAATTGAATCTTTTGCCCTAGT 59.767 33.333 0.00 0.00 37.26 2.57
5043 5394 7.605449 TGAAGAAATTGAATCTTTTGCCCTAG 58.395 34.615 0.00 0.00 37.26 3.02
5044 5395 7.537596 TGAAGAAATTGAATCTTTTGCCCTA 57.462 32.000 0.00 0.00 37.26 3.53
5045 5396 6.423776 TGAAGAAATTGAATCTTTTGCCCT 57.576 33.333 0.00 0.00 37.26 5.19
5046 5397 6.314648 GGATGAAGAAATTGAATCTTTTGCCC 59.685 38.462 0.00 0.00 37.26 5.36
5047 5398 6.314648 GGGATGAAGAAATTGAATCTTTTGCC 59.685 38.462 0.00 0.00 37.26 4.52
5048 5399 7.064253 CAGGGATGAAGAAATTGAATCTTTTGC 59.936 37.037 0.00 0.00 37.26 3.68
5049 5400 7.548075 CCAGGGATGAAGAAATTGAATCTTTTG 59.452 37.037 0.00 0.00 37.26 2.44
5050 5401 7.618137 CCAGGGATGAAGAAATTGAATCTTTT 58.382 34.615 0.00 0.00 37.26 2.27
5051 5402 6.351626 GCCAGGGATGAAGAAATTGAATCTTT 60.352 38.462 0.00 0.00 37.26 2.52
5052 5403 5.128335 GCCAGGGATGAAGAAATTGAATCTT 59.872 40.000 0.00 0.00 39.76 2.40
5053 5404 4.648307 GCCAGGGATGAAGAAATTGAATCT 59.352 41.667 0.00 0.00 0.00 2.40
5054 5405 4.202192 GGCCAGGGATGAAGAAATTGAATC 60.202 45.833 0.00 0.00 0.00 2.52
5055 5406 3.708121 GGCCAGGGATGAAGAAATTGAAT 59.292 43.478 0.00 0.00 0.00 2.57
5056 5407 3.099141 GGCCAGGGATGAAGAAATTGAA 58.901 45.455 0.00 0.00 0.00 2.69
5057 5408 2.312741 AGGCCAGGGATGAAGAAATTGA 59.687 45.455 5.01 0.00 0.00 2.57
5075 5426 0.321122 CTGAGTGGTCTTGTCCAGGC 60.321 60.000 0.00 0.00 38.23 4.85
5093 5444 4.676196 GCTTCGCCAACATGAATTTGATCT 60.676 41.667 0.00 0.00 0.00 2.75
5094 5445 3.549070 GCTTCGCCAACATGAATTTGATC 59.451 43.478 0.00 0.00 0.00 2.92
5095 5446 3.514645 GCTTCGCCAACATGAATTTGAT 58.485 40.909 0.00 0.00 0.00 2.57
5096 5447 2.945278 GCTTCGCCAACATGAATTTGA 58.055 42.857 0.00 0.00 0.00 2.69
5153 5504 0.888736 CACCCGCATGACCAAGAACA 60.889 55.000 0.00 0.00 0.00 3.18
5165 5516 2.664851 CAGAAACGAGCACCCGCA 60.665 61.111 0.00 0.00 42.27 5.69
5247 5598 6.770303 ACGGAGGGAGTAGTAGTTATCTTAAC 59.230 42.308 0.00 0.00 0.00 2.01
5286 5637 8.122306 TCCGTGTGTAGTTCATATTAAAATCG 57.878 34.615 0.00 0.00 0.00 3.34
5327 5696 6.889301 ATGGACTACATATGGAGCAAAATG 57.111 37.500 15.30 0.00 38.26 2.32
5379 5748 4.408182 AACTCATATTCCCTCCGTTCTG 57.592 45.455 0.00 0.00 0.00 3.02
5385 5754 5.990668 ACAACACTAACTCATATTCCCTCC 58.009 41.667 0.00 0.00 0.00 4.30
5386 5755 6.640518 TGACAACACTAACTCATATTCCCTC 58.359 40.000 0.00 0.00 0.00 4.30
5388 5757 7.865706 AATGACAACACTAACTCATATTCCC 57.134 36.000 0.00 0.00 0.00 3.97
5405 5774 5.648178 ATGTTGCTTCATGCTAATGACAA 57.352 34.783 0.00 0.00 42.60 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.