Multiple sequence alignment - TraesCS4A01G129200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G129200 chr4A 100.000 6163 0 0 1 6163 167744185 167750347 0.000000e+00 11382.0
1 TraesCS4A01G129200 chr4A 89.873 79 7 1 4656 4733 569867975 569867897 3.930000e-17 100.0
2 TraesCS4A01G129200 chr4A 89.744 78 7 1 4657 4733 569867884 569867961 1.410000e-16 99.0
3 TraesCS4A01G129200 chr4D 95.299 5148 129 34 713 5844 308597655 308592605 0.000000e+00 8061.0
4 TraesCS4A01G129200 chr4D 89.535 516 36 8 86 597 308598154 308597653 6.740000e-179 638.0
5 TraesCS4A01G129200 chr4D 85.449 323 25 10 5667 5987 308589877 308589575 3.590000e-82 316.0
6 TraesCS4A01G129200 chr4D 90.135 223 14 5 5826 6046 308590792 308590576 3.640000e-72 283.0
7 TraesCS4A01G129200 chr4B 95.735 4338 133 21 713 5038 385425085 385420788 0.000000e+00 6938.0
8 TraesCS4A01G129200 chr4B 93.685 966 38 13 5005 5960 385420791 385419839 0.000000e+00 1424.0
9 TraesCS4A01G129200 chr4B 85.083 362 38 14 5005 5360 366932153 366932504 7.600000e-94 355.0
10 TraesCS4A01G129200 chr4B 90.517 232 20 2 91 322 385425683 385425454 7.760000e-79 305.0
11 TraesCS4A01G129200 chr4B 90.798 163 11 1 5824 5986 385418795 385418637 1.350000e-51 215.0
12 TraesCS4A01G129200 chr4B 89.241 158 17 0 379 536 385425432 385425275 1.360000e-46 198.0
13 TraesCS4A01G129200 chr4B 89.474 76 7 1 4657 4731 47623481 47623406 1.830000e-15 95.3
14 TraesCS4A01G129200 chr2A 86.158 354 34 13 5005 5351 508088699 508088354 9.760000e-98 368.0
15 TraesCS4A01G129200 chr3A 83.427 356 47 11 5012 5363 750207878 750208225 2.770000e-83 320.0
16 TraesCS4A01G129200 chr3A 89.394 66 7 0 4385 4450 448444721 448444656 3.960000e-12 84.2
17 TraesCS4A01G129200 chr6A 83.235 340 36 17 5030 5362 325217292 325216967 6.040000e-75 292.0
18 TraesCS4A01G129200 chr7B 91.000 100 9 0 596 695 634857848 634857749 1.080000e-27 135.0
19 TraesCS4A01G129200 chr2D 90.909 99 9 0 597 695 181585926 181585828 3.880000e-27 134.0
20 TraesCS4A01G129200 chr2D 91.860 86 6 1 1 86 249943594 249943678 1.090000e-22 119.0
21 TraesCS4A01G129200 chr2D 91.765 85 6 1 1 85 344605254 344605337 3.900000e-22 117.0
22 TraesCS4A01G129200 chr2D 90.909 88 7 1 2 89 505590533 505590447 3.900000e-22 117.0
23 TraesCS4A01G129200 chr3D 93.023 86 5 1 1 86 276311799 276311715 2.330000e-24 124.0
24 TraesCS4A01G129200 chr7D 92.941 85 5 1 1 85 97279246 97279329 8.390000e-24 122.0
25 TraesCS4A01G129200 chr7A 88.776 98 11 0 598 695 359274641 359274544 3.020000e-23 121.0
26 TraesCS4A01G129200 chr6B 91.954 87 6 1 1 87 240613048 240612963 3.020000e-23 121.0
27 TraesCS4A01G129200 chr6B 100.000 30 0 0 4673 4702 437459462 437459491 8.630000e-04 56.5
28 TraesCS4A01G129200 chr5D 91.765 85 6 1 1 85 292941191 292941108 3.900000e-22 117.0
29 TraesCS4A01G129200 chr5D 91.892 74 5 1 4661 4733 456063615 456063688 1.090000e-17 102.0
30 TraesCS4A01G129200 chr1D 91.765 85 6 1 1 85 284601249 284601166 3.900000e-22 117.0
31 TraesCS4A01G129200 chr1D 91.765 85 6 1 1 85 388268569 388268652 3.900000e-22 117.0
32 TraesCS4A01G129200 chr2B 90.667 75 6 1 4660 4733 232785730 232785804 1.410000e-16 99.0
33 TraesCS4A01G129200 chr5B 95.238 42 1 1 4660 4700 580101420 580101461 1.430000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G129200 chr4A 167744185 167750347 6162 False 11382.0 11382 100.0000 1 6163 1 chr4A.!!$F1 6162
1 TraesCS4A01G129200 chr4D 308589575 308598154 8579 True 2324.5 8061 90.1045 86 6046 4 chr4D.!!$R1 5960
2 TraesCS4A01G129200 chr4B 385418637 385425683 7046 True 1816.0 6938 91.9952 91 5986 5 chr4B.!!$R2 5895

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
642 778 0.105709 ACAAAGTTGGGGAGTTGGGG 60.106 55.0 0.00 0.00 0.00 4.96 F
646 782 0.105709 AGTTGGGGAGTTGGGGTTTG 60.106 55.0 0.00 0.00 0.00 2.93 F
647 783 0.105913 GTTGGGGAGTTGGGGTTTGA 60.106 55.0 0.00 0.00 0.00 2.69 F
652 788 0.178990 GGAGTTGGGGTTTGACAGCT 60.179 55.0 0.00 0.00 0.00 4.24 F
1808 1950 0.385974 GACGCTTTGCACATGGACAC 60.386 55.0 0.00 0.00 0.00 3.67 F
2403 2545 0.699577 TGGGTTCCCTGGAAGTTCCA 60.700 55.0 23.23 23.23 45.98 3.53 F
3227 3371 0.103208 CTGACCACGTCCTATCTGGC 59.897 60.0 0.00 0.00 35.26 4.85 F
3903 4051 0.387239 GGTTGAACTTCCGCATGTGC 60.387 55.0 0.00 0.00 37.78 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1477 1618 0.036875 GTAGTGCTTTGGTGCTCCCT 59.963 55.000 1.59 0.0 0.00 4.20 R
1479 1620 1.807142 GAAGTAGTGCTTTGGTGCTCC 59.193 52.381 0.00 0.0 37.59 4.70 R
1782 1924 2.748461 TGTGCAAAGCGTCTTAACAC 57.252 45.000 13.20 13.2 0.00 3.32 R
2557 2699 6.759827 TCAACCTTCCGATAAGCATTAACTAC 59.240 38.462 0.00 0.0 32.17 2.73 R
3023 3167 2.108168 TGGGTGATGCAGGTAGAGTAC 58.892 52.381 0.00 0.0 0.00 2.73 R
4009 4157 2.684881 CAAGCGACATAAAGGAATGGCT 59.315 45.455 0.00 0.0 32.27 4.75 R
4345 4510 3.641434 AAGATAGTGTTCAGCCTGCAT 57.359 42.857 0.00 0.0 0.00 3.96 R
5902 7947 0.038892 GTGGTTCTTGTAGGCGACGA 60.039 55.000 0.00 0.0 0.00 4.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 7.921786 TTAGTCCAAACAAGAGATATGTTGG 57.078 36.000 2.05 0.00 39.98 3.77
44 45 4.702131 AGTCCAAACAAGAGATATGTTGGC 59.298 41.667 2.05 0.00 39.98 4.52
45 46 4.458989 GTCCAAACAAGAGATATGTTGGCA 59.541 41.667 2.05 0.00 39.98 4.92
46 47 5.126061 GTCCAAACAAGAGATATGTTGGCAT 59.874 40.000 2.05 0.00 39.98 4.40
47 48 5.716228 TCCAAACAAGAGATATGTTGGCATT 59.284 36.000 2.05 0.00 39.98 3.56
48 49 6.889177 TCCAAACAAGAGATATGTTGGCATTA 59.111 34.615 2.05 0.00 39.98 1.90
49 50 7.395772 TCCAAACAAGAGATATGTTGGCATTAA 59.604 33.333 2.05 0.00 39.98 1.40
50 51 8.199449 CCAAACAAGAGATATGTTGGCATTAAT 58.801 33.333 2.05 0.00 39.98 1.40
51 52 9.590451 CAAACAAGAGATATGTTGGCATTAATT 57.410 29.630 2.05 0.00 39.98 1.40
54 55 8.850156 ACAAGAGATATGTTGGCATTAATTACC 58.150 33.333 2.05 0.00 36.58 2.85
55 56 8.849168 CAAGAGATATGTTGGCATTAATTACCA 58.151 33.333 3.29 3.29 36.58 3.25
56 57 8.995027 AGAGATATGTTGGCATTAATTACCAA 57.005 30.769 13.42 13.42 41.08 3.67
57 58 9.420118 AGAGATATGTTGGCATTAATTACCAAA 57.580 29.630 17.40 10.68 44.67 3.28
62 63 7.897575 TGTTGGCATTAATTACCAAAATCAC 57.102 32.000 17.40 9.13 44.67 3.06
63 64 6.876257 TGTTGGCATTAATTACCAAAATCACC 59.124 34.615 17.40 8.04 44.67 4.02
64 65 5.983540 TGGCATTAATTACCAAAATCACCC 58.016 37.500 4.75 0.00 0.00 4.61
65 66 5.485353 TGGCATTAATTACCAAAATCACCCA 59.515 36.000 4.75 0.00 0.00 4.51
66 67 6.013379 TGGCATTAATTACCAAAATCACCCAA 60.013 34.615 4.75 0.00 0.00 4.12
67 68 6.881602 GGCATTAATTACCAAAATCACCCAAA 59.118 34.615 0.22 0.00 0.00 3.28
68 69 7.065683 GGCATTAATTACCAAAATCACCCAAAG 59.934 37.037 0.22 0.00 0.00 2.77
69 70 7.821846 GCATTAATTACCAAAATCACCCAAAGA 59.178 33.333 0.00 0.00 0.00 2.52
70 71 9.369904 CATTAATTACCAAAATCACCCAAAGAG 57.630 33.333 0.00 0.00 0.00 2.85
71 72 4.864704 TTACCAAAATCACCCAAAGAGC 57.135 40.909 0.00 0.00 0.00 4.09
72 73 2.676748 ACCAAAATCACCCAAAGAGCA 58.323 42.857 0.00 0.00 0.00 4.26
73 74 2.365293 ACCAAAATCACCCAAAGAGCAC 59.635 45.455 0.00 0.00 0.00 4.40
74 75 2.629617 CCAAAATCACCCAAAGAGCACT 59.370 45.455 0.00 0.00 0.00 4.40
75 76 3.070015 CCAAAATCACCCAAAGAGCACTT 59.930 43.478 0.00 0.00 38.05 3.16
76 77 4.280677 CCAAAATCACCCAAAGAGCACTTA 59.719 41.667 0.00 0.00 35.05 2.24
77 78 5.047092 CCAAAATCACCCAAAGAGCACTTAT 60.047 40.000 0.00 0.00 35.05 1.73
78 79 6.152661 CCAAAATCACCCAAAGAGCACTTATA 59.847 38.462 0.00 0.00 35.05 0.98
79 80 6.759497 AAATCACCCAAAGAGCACTTATAC 57.241 37.500 0.00 0.00 35.05 1.47
80 81 5.700402 ATCACCCAAAGAGCACTTATACT 57.300 39.130 0.00 0.00 35.05 2.12
81 82 5.499004 TCACCCAAAGAGCACTTATACTT 57.501 39.130 0.00 0.00 35.05 2.24
82 83 5.876357 TCACCCAAAGAGCACTTATACTTT 58.124 37.500 0.00 0.00 35.05 2.66
83 84 5.938125 TCACCCAAAGAGCACTTATACTTTC 59.062 40.000 0.00 0.00 35.05 2.62
84 85 5.705441 CACCCAAAGAGCACTTATACTTTCA 59.295 40.000 0.00 0.00 35.05 2.69
102 103 6.112734 ACTTTCAGTAACACACACATCAAGA 58.887 36.000 0.00 0.00 0.00 3.02
140 141 3.559238 ATGTGTTCATTGTTTCGCCTC 57.441 42.857 0.00 0.00 0.00 4.70
173 174 8.226810 TCTTGTCCAATTTGTATCATATCCCAT 58.773 33.333 0.00 0.00 0.00 4.00
174 175 9.519191 CTTGTCCAATTTGTATCATATCCCATA 57.481 33.333 0.00 0.00 0.00 2.74
322 324 2.472861 GTCACTGTCACATCAACGTCAG 59.527 50.000 0.00 0.00 0.00 3.51
344 346 0.588252 CTGGCACACCTGAACGAAAG 59.412 55.000 0.00 0.00 37.06 2.62
349 351 1.798813 CACACCTGAACGAAAGCCTAC 59.201 52.381 0.00 0.00 0.00 3.18
354 356 2.673368 CCTGAACGAAAGCCTACATGAC 59.327 50.000 0.00 0.00 0.00 3.06
359 361 4.002906 ACGAAAGCCTACATGACAAGAA 57.997 40.909 0.00 0.00 0.00 2.52
360 362 3.997021 ACGAAAGCCTACATGACAAGAAG 59.003 43.478 0.00 0.00 0.00 2.85
361 363 3.997021 CGAAAGCCTACATGACAAGAAGT 59.003 43.478 0.00 0.00 0.00 3.01
362 364 5.168569 CGAAAGCCTACATGACAAGAAGTA 58.831 41.667 0.00 0.00 0.00 2.24
363 365 5.062308 CGAAAGCCTACATGACAAGAAGTAC 59.938 44.000 0.00 0.00 0.00 2.73
364 366 5.483685 AAGCCTACATGACAAGAAGTACA 57.516 39.130 0.00 0.00 0.00 2.90
365 367 4.822026 AGCCTACATGACAAGAAGTACAC 58.178 43.478 0.00 0.00 0.00 2.90
366 368 4.283467 AGCCTACATGACAAGAAGTACACA 59.717 41.667 0.00 0.00 0.00 3.72
367 369 5.046304 AGCCTACATGACAAGAAGTACACAT 60.046 40.000 0.00 0.00 0.00 3.21
368 370 5.292101 GCCTACATGACAAGAAGTACACATC 59.708 44.000 0.00 0.00 0.00 3.06
369 371 5.516696 CCTACATGACAAGAAGTACACATCG 59.483 44.000 0.00 0.00 0.00 3.84
370 372 4.883083 ACATGACAAGAAGTACACATCGT 58.117 39.130 0.00 0.00 0.00 3.73
377 379 6.376978 ACAAGAAGTACACATCGTAGTACAC 58.623 40.000 0.38 0.00 42.26 2.90
403 405 4.269363 CGTACGAACAACCAAGTTTCTCTT 59.731 41.667 10.44 0.00 36.75 2.85
406 408 4.698304 ACGAACAACCAAGTTTCTCTTCAA 59.302 37.500 0.00 0.00 33.63 2.69
415 417 4.802876 AGTTTCTCTTCAACTTCTTGCG 57.197 40.909 0.00 0.00 29.75 4.85
446 451 3.119743 GCGGGGAACAACAACCTTATAAC 60.120 47.826 0.00 0.00 0.00 1.89
482 487 3.148279 CTAGCGGCGGGTCCTCTT 61.148 66.667 9.78 0.00 31.17 2.85
499 504 3.822735 CCTCTTCATCCTTTTGTGCTTCA 59.177 43.478 0.00 0.00 0.00 3.02
501 506 5.047519 CCTCTTCATCCTTTTGTGCTTCAAT 60.048 40.000 0.00 0.00 35.84 2.57
505 510 4.022068 TCATCCTTTTGTGCTTCAATGACC 60.022 41.667 0.00 0.00 35.84 4.02
510 515 1.960417 TGTGCTTCAATGACCGTTCA 58.040 45.000 0.00 0.00 35.73 3.18
516 521 3.189287 GCTTCAATGACCGTTCAAGATGT 59.811 43.478 0.00 0.00 34.61 3.06
603 739 8.392372 CATGATGAATGGATATATAAGCCCTG 57.608 38.462 0.00 0.00 32.10 4.45
604 740 7.515004 TGATGAATGGATATATAAGCCCTGT 57.485 36.000 3.36 0.00 0.00 4.00
605 741 7.932134 TGATGAATGGATATATAAGCCCTGTT 58.068 34.615 3.36 0.00 0.00 3.16
606 742 8.049117 TGATGAATGGATATATAAGCCCTGTTC 58.951 37.037 3.36 6.69 0.00 3.18
607 743 6.406370 TGAATGGATATATAAGCCCTGTTCG 58.594 40.000 3.36 0.00 0.00 3.95
608 744 4.819105 TGGATATATAAGCCCTGTTCGG 57.181 45.455 3.36 0.00 0.00 4.30
609 745 4.422057 TGGATATATAAGCCCTGTTCGGA 58.578 43.478 3.36 0.00 33.16 4.55
610 746 4.841813 TGGATATATAAGCCCTGTTCGGAA 59.158 41.667 3.36 0.00 33.16 4.30
611 747 5.176592 GGATATATAAGCCCTGTTCGGAAC 58.823 45.833 13.86 13.86 33.16 3.62
612 748 5.046520 GGATATATAAGCCCTGTTCGGAACT 60.047 44.000 20.53 3.18 33.16 3.01
613 749 4.772886 ATATAAGCCCTGTTCGGAACTT 57.227 40.909 20.53 9.46 34.57 2.66
614 750 2.943036 TAAGCCCTGTTCGGAACTTT 57.057 45.000 20.53 10.15 33.02 2.66
615 751 1.605753 AAGCCCTGTTCGGAACTTTC 58.394 50.000 20.53 8.24 33.16 2.62
616 752 0.250770 AGCCCTGTTCGGAACTTTCC 60.251 55.000 20.53 7.93 44.05 3.13
617 753 1.241990 GCCCTGTTCGGAACTTTCCC 61.242 60.000 20.53 3.53 44.67 3.97
618 754 0.953960 CCCTGTTCGGAACTTTCCCG 60.954 60.000 20.53 0.00 44.67 5.14
619 755 1.574702 CCTGTTCGGAACTTTCCCGC 61.575 60.000 20.53 0.00 46.10 6.13
620 756 0.602905 CTGTTCGGAACTTTCCCGCT 60.603 55.000 20.53 0.00 46.10 5.52
621 757 0.601841 TGTTCGGAACTTTCCCGCTC 60.602 55.000 20.53 0.00 46.10 5.03
622 758 1.004200 TTCGGAACTTTCCCGCTCC 60.004 57.895 2.29 0.00 46.10 4.70
623 759 1.760479 TTCGGAACTTTCCCGCTCCA 61.760 55.000 2.29 0.00 46.10 3.86
624 760 2.033194 CGGAACTTTCCCGCTCCAC 61.033 63.158 2.29 0.00 44.67 4.02
625 761 1.072505 GGAACTTTCCCGCTCCACA 59.927 57.895 0.00 0.00 41.62 4.17
626 762 0.536460 GGAACTTTCCCGCTCCACAA 60.536 55.000 0.00 0.00 41.62 3.33
627 763 1.314730 GAACTTTCCCGCTCCACAAA 58.685 50.000 0.00 0.00 0.00 2.83
628 764 1.266989 GAACTTTCCCGCTCCACAAAG 59.733 52.381 0.00 0.00 32.97 2.77
629 765 0.182775 ACTTTCCCGCTCCACAAAGT 59.817 50.000 0.00 0.00 34.85 2.66
630 766 1.318576 CTTTCCCGCTCCACAAAGTT 58.681 50.000 0.00 0.00 0.00 2.66
631 767 1.001378 CTTTCCCGCTCCACAAAGTTG 60.001 52.381 0.00 0.00 0.00 3.16
632 768 0.821711 TTCCCGCTCCACAAAGTTGG 60.822 55.000 0.00 0.00 38.10 3.77
633 769 2.268076 CCCGCTCCACAAAGTTGGG 61.268 63.158 0.00 0.00 37.24 4.12
641 777 1.039856 CACAAAGTTGGGGAGTTGGG 58.960 55.000 0.00 0.00 0.00 4.12
642 778 0.105709 ACAAAGTTGGGGAGTTGGGG 60.106 55.000 0.00 0.00 0.00 4.96
643 779 0.105709 CAAAGTTGGGGAGTTGGGGT 60.106 55.000 0.00 0.00 0.00 4.95
644 780 0.639943 AAAGTTGGGGAGTTGGGGTT 59.360 50.000 0.00 0.00 0.00 4.11
645 781 0.639943 AAGTTGGGGAGTTGGGGTTT 59.360 50.000 0.00 0.00 0.00 3.27
646 782 0.105709 AGTTGGGGAGTTGGGGTTTG 60.106 55.000 0.00 0.00 0.00 2.93
647 783 0.105913 GTTGGGGAGTTGGGGTTTGA 60.106 55.000 0.00 0.00 0.00 2.69
648 784 0.105913 TTGGGGAGTTGGGGTTTGAC 60.106 55.000 0.00 0.00 0.00 3.18
649 785 1.289982 TGGGGAGTTGGGGTTTGACA 61.290 55.000 0.00 0.00 0.00 3.58
650 786 0.539669 GGGGAGTTGGGGTTTGACAG 60.540 60.000 0.00 0.00 0.00 3.51
651 787 1.179174 GGGAGTTGGGGTTTGACAGC 61.179 60.000 0.00 0.00 0.00 4.40
652 788 0.178990 GGAGTTGGGGTTTGACAGCT 60.179 55.000 0.00 0.00 0.00 4.24
653 789 1.692411 GAGTTGGGGTTTGACAGCTT 58.308 50.000 0.00 0.00 0.00 3.74
654 790 1.609072 GAGTTGGGGTTTGACAGCTTC 59.391 52.381 0.00 0.00 0.00 3.86
655 791 1.064017 AGTTGGGGTTTGACAGCTTCA 60.064 47.619 0.00 0.00 0.00 3.02
656 792 1.963515 GTTGGGGTTTGACAGCTTCAT 59.036 47.619 0.00 0.00 32.84 2.57
657 793 2.365293 GTTGGGGTTTGACAGCTTCATT 59.635 45.455 0.00 0.00 32.84 2.57
658 794 3.517296 TGGGGTTTGACAGCTTCATTA 57.483 42.857 0.00 0.00 32.84 1.90
659 795 3.838565 TGGGGTTTGACAGCTTCATTAA 58.161 40.909 0.00 0.00 32.84 1.40
660 796 4.219115 TGGGGTTTGACAGCTTCATTAAA 58.781 39.130 0.00 0.00 32.84 1.52
661 797 4.837860 TGGGGTTTGACAGCTTCATTAAAT 59.162 37.500 0.00 0.00 32.84 1.40
662 798 5.306678 TGGGGTTTGACAGCTTCATTAAATT 59.693 36.000 0.00 0.00 32.84 1.82
663 799 5.869344 GGGGTTTGACAGCTTCATTAAATTC 59.131 40.000 0.00 0.00 32.84 2.17
664 800 6.454795 GGGTTTGACAGCTTCATTAAATTCA 58.545 36.000 0.00 0.00 32.84 2.57
665 801 6.587608 GGGTTTGACAGCTTCATTAAATTCAG 59.412 38.462 0.00 0.00 32.84 3.02
666 802 7.370383 GGTTTGACAGCTTCATTAAATTCAGA 58.630 34.615 0.00 0.00 32.84 3.27
667 803 8.031277 GGTTTGACAGCTTCATTAAATTCAGAT 58.969 33.333 0.00 0.00 32.84 2.90
681 817 6.619801 AAATTCAGATAAAGTATGGTCCGC 57.380 37.500 0.00 0.00 0.00 5.54
682 818 5.552870 ATTCAGATAAAGTATGGTCCGCT 57.447 39.130 0.00 0.00 0.00 5.52
683 819 4.585955 TCAGATAAAGTATGGTCCGCTC 57.414 45.455 0.00 0.00 0.00 5.03
684 820 3.321111 TCAGATAAAGTATGGTCCGCTCC 59.679 47.826 0.00 0.00 0.00 4.70
685 821 2.633481 AGATAAAGTATGGTCCGCTCCC 59.367 50.000 0.00 0.00 0.00 4.30
686 822 0.748450 TAAAGTATGGTCCGCTCCCG 59.252 55.000 0.00 0.00 0.00 5.14
708 844 2.261671 GGAGAGAAGCCGAACGCA 59.738 61.111 0.00 0.00 41.38 5.24
709 845 1.807573 GGAGAGAAGCCGAACGCAG 60.808 63.158 0.00 0.00 41.38 5.18
710 846 2.433318 AGAGAAGCCGAACGCAGC 60.433 61.111 0.00 0.00 41.38 5.25
711 847 3.491652 GAGAAGCCGAACGCAGCC 61.492 66.667 0.00 0.00 41.38 4.85
712 848 4.314440 AGAAGCCGAACGCAGCCA 62.314 61.111 0.00 0.00 41.38 4.75
713 849 3.127533 GAAGCCGAACGCAGCCAT 61.128 61.111 0.00 0.00 41.38 4.40
714 850 1.813753 GAAGCCGAACGCAGCCATA 60.814 57.895 0.00 0.00 41.38 2.74
1319 1460 7.492344 CAGTTGATGTATATGTGTGTGCTCTTA 59.508 37.037 0.00 0.00 0.00 2.10
1422 1563 9.180678 CCTGTAATCTGTAAATGTTTTTGTGAC 57.819 33.333 0.00 0.00 0.00 3.67
1423 1564 9.950680 CTGTAATCTGTAAATGTTTTTGTGACT 57.049 29.630 0.00 0.00 0.00 3.41
1475 1616 4.813697 GCCAAGTTTAGTCCATCTGAGATC 59.186 45.833 0.00 0.00 0.00 2.75
1477 1618 6.409704 CCAAGTTTAGTCCATCTGAGATCAA 58.590 40.000 0.00 0.00 0.00 2.57
1479 1620 6.232581 AGTTTAGTCCATCTGAGATCAAGG 57.767 41.667 0.00 0.00 0.00 3.61
1565 1706 7.037873 TCCAGAACTTACACCAAAGTATACCAT 60.038 37.037 0.00 0.00 38.76 3.55
1675 1817 7.391148 ACGGTGCTTAACATGATCTTTTTAT 57.609 32.000 0.00 0.00 0.00 1.40
1771 1913 1.764723 TCATGCCTCCACTATCCACAG 59.235 52.381 0.00 0.00 0.00 3.66
1782 1924 6.414732 TCCACTATCCACAGTTTATTCCTTG 58.585 40.000 0.00 0.00 0.00 3.61
1808 1950 0.385974 GACGCTTTGCACATGGACAC 60.386 55.000 0.00 0.00 0.00 3.67
2043 2185 8.183104 GGCTTTATTTAGGCCTTCATAATTCT 57.817 34.615 12.58 0.00 42.31 2.40
2388 2530 5.250774 ACATCTTAACAGTGTCCTTATGGGT 59.749 40.000 0.00 0.00 36.25 4.51
2403 2545 0.699577 TGGGTTCCCTGGAAGTTCCA 60.700 55.000 23.23 23.23 45.98 3.53
2510 2652 9.685276 TCTTCACATTTGATATAATTCTGTGGT 57.315 29.630 0.00 0.00 0.00 4.16
2661 2803 4.027572 TGAAAATAAATGCGCAGGTAGC 57.972 40.909 18.32 0.67 40.87 3.58
2704 2847 7.739498 TGTTTGGTGACTTCTATTTTACTCC 57.261 36.000 0.00 0.00 0.00 3.85
3023 3167 7.285783 TCATTATTTCCTAGTTTCGTTGTCG 57.714 36.000 0.00 0.00 38.55 4.35
3111 3255 6.357367 AGTTGTCTATTTGTTCCTTGACTGT 58.643 36.000 0.00 0.00 0.00 3.55
3131 3275 5.239525 ACTGTTTAAATTCTGCACAGGAGTC 59.760 40.000 6.25 0.00 39.39 3.36
3146 3290 3.755378 CAGGAGTCCAGGAATTTCTGTTG 59.245 47.826 12.86 0.00 33.14 3.33
3157 3301 7.756722 CCAGGAATTTCTGTTGATGTGTTTATC 59.243 37.037 12.86 0.00 33.14 1.75
3194 3338 4.558538 TTGCTGTCTTTTGAGCTTCTTC 57.441 40.909 0.00 0.00 0.00 2.87
3218 3362 0.320374 TCATGTTCCCTGACCACGTC 59.680 55.000 0.00 0.00 0.00 4.34
3227 3371 0.103208 CTGACCACGTCCTATCTGGC 59.897 60.000 0.00 0.00 35.26 4.85
3247 3391 2.352960 GCTAGTGTTGTGGCTATGCTTC 59.647 50.000 0.00 0.00 0.00 3.86
3455 3603 6.862209 TGGAAATACATCAATAGTTTGTGCC 58.138 36.000 0.00 0.00 34.32 5.01
3480 3628 4.904154 GTGATGTTTACAGTTTCAGCGTTC 59.096 41.667 0.00 0.00 0.00 3.95
3560 3708 7.860373 TGTAGCAGTGATGTTTACATTTTTCAC 59.140 33.333 0.00 6.33 36.57 3.18
3668 3816 6.316140 GCACATATGAGAGTTGGTTTGTGATA 59.684 38.462 10.38 0.00 36.26 2.15
3689 3837 7.602265 GTGATAAAGTGGGCAAATACATGTTTT 59.398 33.333 2.30 0.00 0.00 2.43
3873 4021 8.621286 GGAACTTCATAAGTCTTTTCTGTTTGA 58.379 33.333 0.00 0.00 41.91 2.69
3903 4051 0.387239 GGTTGAACTTCCGCATGTGC 60.387 55.000 0.00 0.00 37.78 4.57
3937 4085 3.825143 ACAAGCCCATCCATTTATTGC 57.175 42.857 0.00 0.00 0.00 3.56
3976 4124 3.628832 TGGGGAGGGATTTGAAAAACT 57.371 42.857 0.00 0.00 0.00 2.66
4143 4291 7.921786 TCAGTTCAGATTGTGGTTTAATAGG 57.078 36.000 0.00 0.00 0.00 2.57
4144 4292 7.458397 TCAGTTCAGATTGTGGTTTAATAGGT 58.542 34.615 0.00 0.00 0.00 3.08
4145 4293 7.606456 TCAGTTCAGATTGTGGTTTAATAGGTC 59.394 37.037 0.00 0.00 0.00 3.85
4146 4294 7.607991 CAGTTCAGATTGTGGTTTAATAGGTCT 59.392 37.037 0.00 0.00 0.00 3.85
4147 4295 8.822805 AGTTCAGATTGTGGTTTAATAGGTCTA 58.177 33.333 0.00 0.00 0.00 2.59
4208 4356 6.263344 CACATCTTACCGTATCGAGAAGAAA 58.737 40.000 0.00 0.00 33.63 2.52
4288 4436 8.858003 AATATTCACTCATGTTACGTGTAGAG 57.142 34.615 0.00 0.99 0.00 2.43
4289 4437 5.952526 TTCACTCATGTTACGTGTAGAGA 57.047 39.130 0.00 3.09 0.00 3.10
4290 4438 5.952526 TCACTCATGTTACGTGTAGAGAA 57.047 39.130 0.00 0.00 0.00 2.87
4291 4439 6.510879 TCACTCATGTTACGTGTAGAGAAT 57.489 37.500 0.00 0.00 0.00 2.40
4292 4440 6.920817 TCACTCATGTTACGTGTAGAGAATT 58.079 36.000 0.00 0.00 0.00 2.17
4293 4441 6.806739 TCACTCATGTTACGTGTAGAGAATTG 59.193 38.462 0.00 0.00 0.00 2.32
4294 4442 6.806739 CACTCATGTTACGTGTAGAGAATTGA 59.193 38.462 0.00 0.00 0.00 2.57
4295 4443 7.489435 CACTCATGTTACGTGTAGAGAATTGAT 59.511 37.037 0.00 0.00 0.00 2.57
4296 4444 8.035394 ACTCATGTTACGTGTAGAGAATTGATT 58.965 33.333 0.00 0.00 0.00 2.57
4297 4445 8.771920 TCATGTTACGTGTAGAGAATTGATTT 57.228 30.769 0.00 0.00 0.00 2.17
4298 4446 9.863845 TCATGTTACGTGTAGAGAATTGATTTA 57.136 29.630 0.00 0.00 0.00 1.40
4299 4447 9.901724 CATGTTACGTGTAGAGAATTGATTTAC 57.098 33.333 0.00 0.00 0.00 2.01
4300 4448 9.871238 ATGTTACGTGTAGAGAATTGATTTACT 57.129 29.630 0.00 0.00 0.00 2.24
4345 4510 8.651389 ACATAGCAAATGAAGCTACTATAGGAA 58.349 33.333 4.43 0.00 46.32 3.36
4624 4789 0.108615 CCTTAGGCAGGTCAGTGTCG 60.109 60.000 0.00 0.00 37.99 4.35
4721 4886 5.508200 AATCAAACTGCAAAACCGTCTTA 57.492 34.783 0.00 0.00 0.00 2.10
4722 4887 5.705609 ATCAAACTGCAAAACCGTCTTAT 57.294 34.783 0.00 0.00 0.00 1.73
4723 4888 6.811253 ATCAAACTGCAAAACCGTCTTATA 57.189 33.333 0.00 0.00 0.00 0.98
4724 4889 6.811253 TCAAACTGCAAAACCGTCTTATAT 57.189 33.333 0.00 0.00 0.00 0.86
4725 4890 7.209471 TCAAACTGCAAAACCGTCTTATATT 57.791 32.000 0.00 0.00 0.00 1.28
4726 4891 7.653647 TCAAACTGCAAAACCGTCTTATATTT 58.346 30.769 0.00 0.00 0.00 1.40
4727 4892 8.784994 TCAAACTGCAAAACCGTCTTATATTTA 58.215 29.630 0.00 0.00 0.00 1.40
4728 4893 9.061610 CAAACTGCAAAACCGTCTTATATTTAG 57.938 33.333 0.00 0.00 0.00 1.85
4729 4894 7.316544 ACTGCAAAACCGTCTTATATTTAGG 57.683 36.000 0.00 0.00 0.00 2.69
4730 4895 6.317893 ACTGCAAAACCGTCTTATATTTAGGG 59.682 38.462 0.00 0.00 0.00 3.53
4731 4896 6.416415 TGCAAAACCGTCTTATATTTAGGGA 58.584 36.000 0.00 0.00 0.00 4.20
4732 4897 6.316890 TGCAAAACCGTCTTATATTTAGGGAC 59.683 38.462 0.00 0.00 0.00 4.46
4733 4898 6.541278 GCAAAACCGTCTTATATTTAGGGACT 59.459 38.462 0.00 0.00 46.37 3.85
4734 4899 7.712205 GCAAAACCGTCTTATATTTAGGGACTA 59.288 37.037 0.00 0.00 41.75 2.59
4735 4900 9.774413 CAAAACCGTCTTATATTTAGGGACTAT 57.226 33.333 0.00 0.00 42.38 2.12
4736 4901 9.774413 AAAACCGTCTTATATTTAGGGACTATG 57.226 33.333 0.00 0.00 42.38 2.23
4737 4902 8.488308 AACCGTCTTATATTTAGGGACTATGT 57.512 34.615 0.00 0.00 42.38 2.29
4738 4903 9.592196 AACCGTCTTATATTTAGGGACTATGTA 57.408 33.333 0.00 0.00 42.38 2.29
4739 4904 9.765295 ACCGTCTTATATTTAGGGACTATGTAT 57.235 33.333 0.00 0.00 42.38 2.29
4846 5013 0.895530 ATGTACTCTCACCGGTGTGG 59.104 55.000 32.74 24.99 42.98 4.17
4981 5153 3.012518 GGAGAGATTGAACATGGGTGTG 58.987 50.000 0.00 0.00 38.92 3.82
5047 5252 7.328493 CGTTTCTGATAAAAATGTTTCCTTCCC 59.672 37.037 0.00 0.00 0.00 3.97
5049 5254 6.561294 TCTGATAAAAATGTTTCCTTCCCCT 58.439 36.000 0.00 0.00 0.00 4.79
5057 5262 2.095461 GTTTCCTTCCCCTCAGCAATC 58.905 52.381 0.00 0.00 0.00 2.67
5058 5263 0.625849 TTCCTTCCCCTCAGCAATCC 59.374 55.000 0.00 0.00 0.00 3.01
5059 5264 0.253347 TCCTTCCCCTCAGCAATCCT 60.253 55.000 0.00 0.00 0.00 3.24
5060 5265 1.009552 TCCTTCCCCTCAGCAATCCTA 59.990 52.381 0.00 0.00 0.00 2.94
5061 5266 1.846439 CCTTCCCCTCAGCAATCCTAA 59.154 52.381 0.00 0.00 0.00 2.69
5063 5268 3.652869 CCTTCCCCTCAGCAATCCTAATA 59.347 47.826 0.00 0.00 0.00 0.98
5073 5285 8.302438 CCTCAGCAATCCTAATATTTTTGGATC 58.698 37.037 11.12 2.49 43.77 3.36
5159 5371 5.163141 TGGTTTTGGAATGACTGTAGGAGAA 60.163 40.000 0.00 0.00 0.00 2.87
5235 5447 5.583061 TCGTTATAAGTGCAGGTTTACCATG 59.417 40.000 1.13 0.00 38.89 3.66
5291 5503 2.670934 CCTCAAGCGTTGCAGGCT 60.671 61.111 8.39 8.39 41.64 4.58
5318 5530 0.782384 GTGTACTTGCGGTTGTCTCG 59.218 55.000 0.00 0.00 0.00 4.04
5345 5557 1.882912 TGCTTTAGATAGCATGGGCG 58.117 50.000 0.00 0.00 45.72 6.13
5543 5757 9.702494 TGCTCTCATATCAGTTATATGTTCTTG 57.298 33.333 4.60 0.00 45.31 3.02
5566 5780 4.097218 GGGGCCACCAAGTCTTTC 57.903 61.111 4.39 0.00 39.85 2.62
5571 5785 0.823356 GCCACCAAGTCTTTCCTGCA 60.823 55.000 0.00 0.00 0.00 4.41
5608 5822 6.946340 TCATAGGAGTAGTTGCATTCTTTCA 58.054 36.000 0.00 0.00 0.00 2.69
5692 5906 0.405198 TGCATCATGGAACCACCTGT 59.595 50.000 0.00 0.00 39.86 4.00
5723 5937 2.533266 TCACCACACTTCTTGCTCTC 57.467 50.000 0.00 0.00 0.00 3.20
5735 5949 1.962822 TGCTCTCGCACTTGCTTGG 60.963 57.895 0.00 0.00 42.25 3.61
5743 5957 0.040067 GCACTTGCTTGGTTTCTCCG 60.040 55.000 0.00 0.00 37.23 4.63
5762 5976 1.304052 TTTGGATGCCGGGTTGAGG 60.304 57.895 2.18 0.00 0.00 3.86
5764 5978 3.407967 GGATGCCGGGTTGAGGGA 61.408 66.667 2.18 0.00 0.00 4.20
5766 5980 2.285368 ATGCCGGGTTGAGGGAGA 60.285 61.111 2.18 0.00 31.06 3.71
5767 5981 2.317149 GATGCCGGGTTGAGGGAGAG 62.317 65.000 2.18 0.00 31.06 3.20
5770 5984 2.067197 CCGGGTTGAGGGAGAGTTT 58.933 57.895 0.00 0.00 0.00 2.66
5771 5985 0.400594 CCGGGTTGAGGGAGAGTTTT 59.599 55.000 0.00 0.00 0.00 2.43
5775 5989 3.747708 CGGGTTGAGGGAGAGTTTTCTTT 60.748 47.826 0.00 0.00 32.53 2.52
5776 5990 4.215908 GGGTTGAGGGAGAGTTTTCTTTT 58.784 43.478 0.00 0.00 32.53 2.27
5777 5991 4.278669 GGGTTGAGGGAGAGTTTTCTTTTC 59.721 45.833 0.00 0.00 32.53 2.29
5778 5992 4.278669 GGTTGAGGGAGAGTTTTCTTTTCC 59.721 45.833 0.00 0.00 32.53 3.13
5779 5993 5.133941 GTTGAGGGAGAGTTTTCTTTTCCT 58.866 41.667 0.00 0.00 35.60 3.36
5780 5994 4.718961 TGAGGGAGAGTTTTCTTTTCCTG 58.281 43.478 0.00 0.00 35.60 3.86
5784 5998 5.103898 AGGGAGAGTTTTCTTTTCCTGAAGT 60.104 40.000 0.00 0.00 35.60 3.01
5861 7906 9.841295 AAAATCATTAAGCTTGATGGCAAATAT 57.159 25.926 25.81 11.76 34.14 1.28
5880 7925 4.217112 ACCCTGAGGTCTGACACC 57.783 61.111 10.38 1.09 46.45 4.16
5902 7947 1.331214 CAATCTGGCCACAACAACCT 58.669 50.000 0.00 0.00 0.00 3.50
5903 7948 1.270550 CAATCTGGCCACAACAACCTC 59.729 52.381 0.00 0.00 0.00 3.85
5904 7949 0.606401 ATCTGGCCACAACAACCTCG 60.606 55.000 0.00 0.00 0.00 4.63
5926 7971 1.826385 GCCTACAAGAACCACATGCT 58.174 50.000 0.00 0.00 0.00 3.79
5932 7977 6.555315 CCTACAAGAACCACATGCTAAATTC 58.445 40.000 0.00 0.00 0.00 2.17
5988 8034 2.671070 CCACATCTGGGAACGCCT 59.329 61.111 0.00 0.00 33.23 5.52
5989 8035 1.746615 CCACATCTGGGAACGCCTG 60.747 63.158 0.00 0.00 33.23 4.85
5995 8041 3.965539 CTGGGAACGCCTGGCTCAG 62.966 68.421 17.92 11.77 0.00 3.35
6004 8050 0.108207 GCCTGGCTCAGATGCATACT 59.892 55.000 12.43 0.00 32.44 2.12
6027 8073 1.275573 ACAGAGGCGAAGTTAGTTCCC 59.724 52.381 0.00 0.00 0.00 3.97
6033 8079 2.030540 GGCGAAGTTAGTTCCCCAAAAC 60.031 50.000 0.00 0.00 33.72 2.43
6040 8086 5.329399 AGTTAGTTCCCCAAAACATGCATA 58.671 37.500 0.00 0.00 0.00 3.14
6056 8128 5.714333 ACATGCATAATAACCTTGTCCACAA 59.286 36.000 0.00 0.00 0.00 3.33
6058 8130 6.656632 TGCATAATAACCTTGTCCACAAAA 57.343 33.333 0.00 0.00 35.15 2.44
6063 8135 6.800072 AATAACCTTGTCCACAAAAGGAAA 57.200 33.333 8.39 0.00 44.93 3.13
6078 8150 1.134220 AGGAAAGGCAGACAAACGTCA 60.134 47.619 0.00 0.00 35.75 4.35
6109 8181 1.469308 CGTAGCACGAGAGGAGAAACT 59.531 52.381 3.04 0.00 46.05 2.66
6111 8183 3.312973 CGTAGCACGAGAGGAGAAACTAT 59.687 47.826 3.04 0.00 46.05 2.12
6112 8184 4.201930 CGTAGCACGAGAGGAGAAACTATT 60.202 45.833 3.04 0.00 46.05 1.73
6114 8186 5.916661 AGCACGAGAGGAGAAACTATTAA 57.083 39.130 0.00 0.00 0.00 1.40
6118 8190 6.474102 GCACGAGAGGAGAAACTATTAAAGAG 59.526 42.308 0.00 0.00 0.00 2.85
6119 8191 7.628794 GCACGAGAGGAGAAACTATTAAAGAGA 60.629 40.741 0.00 0.00 0.00 3.10
6120 8192 8.244802 CACGAGAGGAGAAACTATTAAAGAGAA 58.755 37.037 0.00 0.00 0.00 2.87
6121 8193 8.804204 ACGAGAGGAGAAACTATTAAAGAGAAA 58.196 33.333 0.00 0.00 0.00 2.52
6122 8194 9.078753 CGAGAGGAGAAACTATTAAAGAGAAAC 57.921 37.037 0.00 0.00 0.00 2.78
6124 8196 8.804204 AGAGGAGAAACTATTAAAGAGAAACGA 58.196 33.333 0.00 0.00 0.00 3.85
6125 8197 8.989653 AGGAGAAACTATTAAAGAGAAACGAG 57.010 34.615 0.00 0.00 0.00 4.18
6126 8198 8.804204 AGGAGAAACTATTAAAGAGAAACGAGA 58.196 33.333 0.00 0.00 0.00 4.04
6127 8199 9.078753 GGAGAAACTATTAAAGAGAAACGAGAG 57.921 37.037 0.00 0.00 0.00 3.20
6128 8200 9.843334 GAGAAACTATTAAAGAGAAACGAGAGA 57.157 33.333 0.00 0.00 0.00 3.10
6129 8201 9.849166 AGAAACTATTAAAGAGAAACGAGAGAG 57.151 33.333 0.00 0.00 0.00 3.20
6130 8202 9.843334 GAAACTATTAAAGAGAAACGAGAGAGA 57.157 33.333 0.00 0.00 0.00 3.10
6132 8204 8.795842 ACTATTAAAGAGAAACGAGAGAGAGA 57.204 34.615 0.00 0.00 0.00 3.10
6133 8205 8.889717 ACTATTAAAGAGAAACGAGAGAGAGAG 58.110 37.037 0.00 0.00 0.00 3.20
6134 8206 6.503589 TTAAAGAGAAACGAGAGAGAGAGG 57.496 41.667 0.00 0.00 0.00 3.69
6135 8207 2.999331 AGAGAAACGAGAGAGAGAGGG 58.001 52.381 0.00 0.00 0.00 4.30
6136 8208 2.574369 AGAGAAACGAGAGAGAGAGGGA 59.426 50.000 0.00 0.00 0.00 4.20
6137 8209 2.943033 GAGAAACGAGAGAGAGAGGGAG 59.057 54.545 0.00 0.00 0.00 4.30
6139 8211 2.413310 AACGAGAGAGAGAGGGAGAC 57.587 55.000 0.00 0.00 0.00 3.36
6140 8212 1.281419 ACGAGAGAGAGAGGGAGACA 58.719 55.000 0.00 0.00 0.00 3.41
6141 8213 1.209504 ACGAGAGAGAGAGGGAGACAG 59.790 57.143 0.00 0.00 0.00 3.51
6144 8216 2.771943 GAGAGAGAGAGGGAGACAGAGA 59.228 54.545 0.00 0.00 0.00 3.10
6145 8217 3.189606 AGAGAGAGAGGGAGACAGAGAA 58.810 50.000 0.00 0.00 0.00 2.87
6146 8218 3.200825 AGAGAGAGAGGGAGACAGAGAAG 59.799 52.174 0.00 0.00 0.00 2.85
6147 8219 2.919602 AGAGAGAGGGAGACAGAGAAGT 59.080 50.000 0.00 0.00 0.00 3.01
6148 8220 4.108570 AGAGAGAGGGAGACAGAGAAGTA 58.891 47.826 0.00 0.00 0.00 2.24
6150 8222 5.014755 AGAGAGAGGGAGACAGAGAAGTAAA 59.985 44.000 0.00 0.00 0.00 2.01
6151 8223 5.646215 AGAGAGGGAGACAGAGAAGTAAAA 58.354 41.667 0.00 0.00 0.00 1.52
6153 8225 5.399113 AGAGGGAGACAGAGAAGTAAAAGT 58.601 41.667 0.00 0.00 0.00 2.66
6154 8226 5.245075 AGAGGGAGACAGAGAAGTAAAAGTG 59.755 44.000 0.00 0.00 0.00 3.16
6155 8227 5.148502 AGGGAGACAGAGAAGTAAAAGTGA 58.851 41.667 0.00 0.00 0.00 3.41
6156 8228 5.602978 AGGGAGACAGAGAAGTAAAAGTGAA 59.397 40.000 0.00 0.00 0.00 3.18
6157 8229 6.271159 AGGGAGACAGAGAAGTAAAAGTGAAT 59.729 38.462 0.00 0.00 0.00 2.57
6158 8230 6.937465 GGGAGACAGAGAAGTAAAAGTGAATT 59.063 38.462 0.00 0.00 0.00 2.17
6159 8231 7.445707 GGGAGACAGAGAAGTAAAAGTGAATTT 59.554 37.037 0.00 0.00 0.00 1.82
6160 8232 8.841300 GGAGACAGAGAAGTAAAAGTGAATTTT 58.159 33.333 0.00 0.00 43.54 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 9.613428 CCAACATATCTCTTGTTTGGACTAATA 57.387 33.333 0.00 0.00 35.18 0.98
18 19 7.067494 GCCAACATATCTCTTGTTTGGACTAAT 59.933 37.037 2.33 0.00 35.18 1.73
19 20 6.374333 GCCAACATATCTCTTGTTTGGACTAA 59.626 38.462 2.33 0.00 35.18 2.24
20 21 5.880332 GCCAACATATCTCTTGTTTGGACTA 59.120 40.000 2.33 0.00 35.18 2.59
21 22 4.702131 GCCAACATATCTCTTGTTTGGACT 59.298 41.667 2.33 0.00 35.18 3.85
22 23 4.458989 TGCCAACATATCTCTTGTTTGGAC 59.541 41.667 2.33 0.00 35.18 4.02
23 24 4.661222 TGCCAACATATCTCTTGTTTGGA 58.339 39.130 2.33 0.00 35.18 3.53
24 25 5.587388 ATGCCAACATATCTCTTGTTTGG 57.413 39.130 0.00 0.00 35.18 3.28
25 26 9.590451 AATTAATGCCAACATATCTCTTGTTTG 57.410 29.630 0.00 0.00 35.18 2.93
28 29 8.850156 GGTAATTAATGCCAACATATCTCTTGT 58.150 33.333 4.87 0.00 34.62 3.16
29 30 8.849168 TGGTAATTAATGCCAACATATCTCTTG 58.151 33.333 8.95 0.00 41.29 3.02
30 31 8.995027 TGGTAATTAATGCCAACATATCTCTT 57.005 30.769 8.95 0.00 41.29 2.85
41 42 5.485353 TGGGTGATTTTGGTAATTAATGCCA 59.515 36.000 7.66 7.66 42.69 4.92
42 43 5.983540 TGGGTGATTTTGGTAATTAATGCC 58.016 37.500 0.00 0.00 0.00 4.40
43 44 7.821846 TCTTTGGGTGATTTTGGTAATTAATGC 59.178 33.333 0.00 0.00 0.00 3.56
44 45 9.369904 CTCTTTGGGTGATTTTGGTAATTAATG 57.630 33.333 0.00 0.00 0.00 1.90
45 46 8.040727 GCTCTTTGGGTGATTTTGGTAATTAAT 58.959 33.333 0.00 0.00 0.00 1.40
46 47 7.015682 TGCTCTTTGGGTGATTTTGGTAATTAA 59.984 33.333 0.00 0.00 0.00 1.40
47 48 6.495181 TGCTCTTTGGGTGATTTTGGTAATTA 59.505 34.615 0.00 0.00 0.00 1.40
48 49 5.306678 TGCTCTTTGGGTGATTTTGGTAATT 59.693 36.000 0.00 0.00 0.00 1.40
49 50 4.837860 TGCTCTTTGGGTGATTTTGGTAAT 59.162 37.500 0.00 0.00 0.00 1.89
50 51 4.038642 GTGCTCTTTGGGTGATTTTGGTAA 59.961 41.667 0.00 0.00 0.00 2.85
51 52 3.572255 GTGCTCTTTGGGTGATTTTGGTA 59.428 43.478 0.00 0.00 0.00 3.25
52 53 2.365293 GTGCTCTTTGGGTGATTTTGGT 59.635 45.455 0.00 0.00 0.00 3.67
53 54 2.629617 AGTGCTCTTTGGGTGATTTTGG 59.370 45.455 0.00 0.00 0.00 3.28
54 55 4.326504 AAGTGCTCTTTGGGTGATTTTG 57.673 40.909 0.00 0.00 0.00 2.44
55 56 6.948309 AGTATAAGTGCTCTTTGGGTGATTTT 59.052 34.615 6.31 0.00 35.36 1.82
56 57 6.485171 AGTATAAGTGCTCTTTGGGTGATTT 58.515 36.000 6.31 0.00 35.36 2.17
57 58 6.067217 AGTATAAGTGCTCTTTGGGTGATT 57.933 37.500 6.31 0.00 35.36 2.57
58 59 5.700402 AGTATAAGTGCTCTTTGGGTGAT 57.300 39.130 6.31 0.00 35.36 3.06
59 60 5.499004 AAGTATAAGTGCTCTTTGGGTGA 57.501 39.130 6.31 0.00 35.36 4.02
60 61 5.705441 TGAAAGTATAAGTGCTCTTTGGGTG 59.295 40.000 6.31 0.00 35.36 4.61
61 62 5.876357 TGAAAGTATAAGTGCTCTTTGGGT 58.124 37.500 6.31 0.00 35.36 4.51
62 63 6.428385 CTGAAAGTATAAGTGCTCTTTGGG 57.572 41.667 6.31 0.00 35.36 4.12
79 80 6.603237 TCTTGATGTGTGTGTTACTGAAAG 57.397 37.500 0.00 0.00 42.29 2.62
80 81 6.993786 TTCTTGATGTGTGTGTTACTGAAA 57.006 33.333 0.00 0.00 0.00 2.69
81 82 6.993786 TTTCTTGATGTGTGTGTTACTGAA 57.006 33.333 0.00 0.00 0.00 3.02
82 83 6.993786 TTTTCTTGATGTGTGTGTTACTGA 57.006 33.333 0.00 0.00 0.00 3.41
83 84 7.195646 ACATTTTCTTGATGTGTGTGTTACTG 58.804 34.615 0.00 0.00 36.43 2.74
84 85 7.333528 ACATTTTCTTGATGTGTGTGTTACT 57.666 32.000 0.00 0.00 36.43 2.24
123 124 4.647424 AAAAGAGGCGAAACAATGAACA 57.353 36.364 0.00 0.00 0.00 3.18
225 227 6.821160 TCGTTCCAATCACAAGCATTTATAGA 59.179 34.615 0.00 0.00 0.00 1.98
230 232 4.202101 TGTTCGTTCCAATCACAAGCATTT 60.202 37.500 0.00 0.00 0.00 2.32
316 318 2.588877 GTGTGCCAGCACTGACGT 60.589 61.111 22.29 0.00 46.30 4.34
322 324 2.896801 CGTTCAGGTGTGCCAGCAC 61.897 63.158 15.80 15.80 46.33 4.40
334 336 3.325870 TGTCATGTAGGCTTTCGTTCAG 58.674 45.455 0.00 0.00 0.00 3.02
344 346 4.566004 TGTGTACTTCTTGTCATGTAGGC 58.434 43.478 0.00 0.00 0.00 3.93
349 351 6.093404 ACTACGATGTGTACTTCTTGTCATG 58.907 40.000 0.00 0.00 0.00 3.07
354 356 6.376177 TGTGTACTACGATGTGTACTTCTTG 58.624 40.000 0.00 0.00 39.57 3.02
359 361 4.633126 ACGATGTGTACTACGATGTGTACT 59.367 41.667 0.00 0.00 39.57 2.73
360 362 4.901814 ACGATGTGTACTACGATGTGTAC 58.098 43.478 0.00 0.00 39.37 2.90
377 379 4.210537 AGAAACTTGGTTGTTCGTACGATG 59.789 41.667 20.27 0.56 0.00 3.84
403 405 3.002791 CCATCTAAGCGCAAGAAGTTGA 58.997 45.455 11.47 0.00 43.02 3.18
406 408 1.373570 GCCATCTAAGCGCAAGAAGT 58.626 50.000 11.47 0.00 43.02 3.01
415 417 0.393808 TTGTTCCCCGCCATCTAAGC 60.394 55.000 0.00 0.00 0.00 3.09
482 487 4.022068 GGTCATTGAAGCACAAAAGGATGA 60.022 41.667 0.86 0.00 42.03 2.92
499 504 4.466370 TCCTCTACATCTTGAACGGTCATT 59.534 41.667 2.76 0.00 32.48 2.57
501 506 3.427573 TCCTCTACATCTTGAACGGTCA 58.572 45.455 0.00 0.00 0.00 4.02
505 510 4.988540 TGTTGTTCCTCTACATCTTGAACG 59.011 41.667 0.00 0.00 38.46 3.95
516 521 6.208007 TCTCTGTTAACGATGTTGTTCCTCTA 59.792 38.462 0.26 0.00 33.32 2.43
531 536 6.315091 GGTTTTTCCCTCTTCTCTGTTAAC 57.685 41.667 0.00 0.00 0.00 2.01
589 725 6.038997 AGTTCCGAACAGGGCTTATATATC 57.961 41.667 13.69 0.00 41.52 1.63
597 733 0.250770 GGAAAGTTCCGAACAGGGCT 60.251 55.000 13.69 0.00 41.52 5.19
598 734 2.254471 GGAAAGTTCCGAACAGGGC 58.746 57.895 13.69 0.37 41.52 5.19
607 743 0.536460 TTGTGGAGCGGGAAAGTTCC 60.536 55.000 1.10 1.10 46.82 3.62
608 744 1.266989 CTTTGTGGAGCGGGAAAGTTC 59.733 52.381 0.00 0.00 0.00 3.01
609 745 1.318576 CTTTGTGGAGCGGGAAAGTT 58.681 50.000 0.00 0.00 0.00 2.66
610 746 0.182775 ACTTTGTGGAGCGGGAAAGT 59.817 50.000 0.00 0.00 34.54 2.66
611 747 1.001378 CAACTTTGTGGAGCGGGAAAG 60.001 52.381 0.00 0.00 0.00 2.62
612 748 1.028905 CAACTTTGTGGAGCGGGAAA 58.971 50.000 0.00 0.00 0.00 3.13
613 749 0.821711 CCAACTTTGTGGAGCGGGAA 60.822 55.000 0.00 0.00 41.65 3.97
614 750 1.228124 CCAACTTTGTGGAGCGGGA 60.228 57.895 0.00 0.00 41.65 5.14
615 751 2.268076 CCCAACTTTGTGGAGCGGG 61.268 63.158 0.00 0.00 41.65 6.13
616 752 2.268076 CCCCAACTTTGTGGAGCGG 61.268 63.158 0.00 0.00 41.65 5.52
617 753 1.228124 TCCCCAACTTTGTGGAGCG 60.228 57.895 0.00 0.00 41.65 5.03
618 754 2.646121 CTCCCCAACTTTGTGGAGC 58.354 57.895 7.46 0.00 43.97 4.70
620 756 1.410932 CCAACTCCCCAACTTTGTGGA 60.411 52.381 0.00 0.00 41.65 4.02
621 757 1.039856 CCAACTCCCCAACTTTGTGG 58.960 55.000 0.00 0.00 38.51 4.17
622 758 1.039856 CCCAACTCCCCAACTTTGTG 58.960 55.000 0.00 0.00 0.00 3.33
623 759 0.105709 CCCCAACTCCCCAACTTTGT 60.106 55.000 0.00 0.00 0.00 2.83
624 760 0.105709 ACCCCAACTCCCCAACTTTG 60.106 55.000 0.00 0.00 0.00 2.77
625 761 0.639943 AACCCCAACTCCCCAACTTT 59.360 50.000 0.00 0.00 0.00 2.66
626 762 0.639943 AAACCCCAACTCCCCAACTT 59.360 50.000 0.00 0.00 0.00 2.66
627 763 0.105709 CAAACCCCAACTCCCCAACT 60.106 55.000 0.00 0.00 0.00 3.16
628 764 0.105913 TCAAACCCCAACTCCCCAAC 60.106 55.000 0.00 0.00 0.00 3.77
629 765 0.105913 GTCAAACCCCAACTCCCCAA 60.106 55.000 0.00 0.00 0.00 4.12
630 766 1.289982 TGTCAAACCCCAACTCCCCA 61.290 55.000 0.00 0.00 0.00 4.96
631 767 0.539669 CTGTCAAACCCCAACTCCCC 60.540 60.000 0.00 0.00 0.00 4.81
632 768 1.179174 GCTGTCAAACCCCAACTCCC 61.179 60.000 0.00 0.00 0.00 4.30
633 769 0.178990 AGCTGTCAAACCCCAACTCC 60.179 55.000 0.00 0.00 0.00 3.85
634 770 1.609072 GAAGCTGTCAAACCCCAACTC 59.391 52.381 0.00 0.00 0.00 3.01
635 771 1.064017 TGAAGCTGTCAAACCCCAACT 60.064 47.619 0.00 0.00 31.51 3.16
636 772 1.398692 TGAAGCTGTCAAACCCCAAC 58.601 50.000 0.00 0.00 31.51 3.77
637 773 2.380064 ATGAAGCTGTCAAACCCCAA 57.620 45.000 0.00 0.00 40.50 4.12
638 774 2.380064 AATGAAGCTGTCAAACCCCA 57.620 45.000 0.00 0.00 40.50 4.96
639 775 4.864704 TTTAATGAAGCTGTCAAACCCC 57.135 40.909 0.00 0.00 40.50 4.95
640 776 6.454795 TGAATTTAATGAAGCTGTCAAACCC 58.545 36.000 0.00 0.00 40.50 4.11
641 777 7.370383 TCTGAATTTAATGAAGCTGTCAAACC 58.630 34.615 0.00 0.00 40.50 3.27
642 778 8.976986 ATCTGAATTTAATGAAGCTGTCAAAC 57.023 30.769 0.00 0.00 40.50 2.93
655 791 8.784043 GCGGACCATACTTTATCTGAATTTAAT 58.216 33.333 0.00 0.00 0.00 1.40
656 792 7.990886 AGCGGACCATACTTTATCTGAATTTAA 59.009 33.333 0.00 0.00 0.00 1.52
657 793 7.506114 AGCGGACCATACTTTATCTGAATTTA 58.494 34.615 0.00 0.00 0.00 1.40
658 794 6.357367 AGCGGACCATACTTTATCTGAATTT 58.643 36.000 0.00 0.00 0.00 1.82
659 795 5.930135 AGCGGACCATACTTTATCTGAATT 58.070 37.500 0.00 0.00 0.00 2.17
660 796 5.511545 GGAGCGGACCATACTTTATCTGAAT 60.512 44.000 0.00 0.00 0.00 2.57
661 797 4.202223 GGAGCGGACCATACTTTATCTGAA 60.202 45.833 0.00 0.00 0.00 3.02
662 798 3.321111 GGAGCGGACCATACTTTATCTGA 59.679 47.826 0.00 0.00 0.00 3.27
663 799 3.555168 GGGAGCGGACCATACTTTATCTG 60.555 52.174 0.00 0.00 0.00 2.90
664 800 2.633481 GGGAGCGGACCATACTTTATCT 59.367 50.000 0.00 0.00 0.00 1.98
665 801 2.609737 CGGGAGCGGACCATACTTTATC 60.610 54.545 0.00 0.00 0.00 1.75
666 802 1.343465 CGGGAGCGGACCATACTTTAT 59.657 52.381 0.00 0.00 0.00 1.40
667 803 0.748450 CGGGAGCGGACCATACTTTA 59.252 55.000 0.00 0.00 0.00 1.85
668 804 1.520666 CGGGAGCGGACCATACTTT 59.479 57.895 0.00 0.00 0.00 2.66
669 805 2.432300 CCGGGAGCGGACCATACTT 61.432 63.158 0.00 0.00 0.00 2.24
670 806 2.838225 CCGGGAGCGGACCATACT 60.838 66.667 0.00 0.00 0.00 2.12
671 807 2.836360 TCCGGGAGCGGACCATAC 60.836 66.667 0.00 0.00 32.43 2.39
672 808 2.520982 CTCCGGGAGCGGACCATA 60.521 66.667 11.83 0.00 33.99 2.74
685 821 4.560856 CGGCTTCTCTCCGCTCCG 62.561 72.222 0.00 0.00 40.46 4.63
686 822 2.711922 TTCGGCTTCTCTCCGCTCC 61.712 63.158 0.00 0.00 46.05 4.70
687 823 1.517475 GTTCGGCTTCTCTCCGCTC 60.517 63.158 0.00 0.00 46.05 5.03
688 824 2.574399 GTTCGGCTTCTCTCCGCT 59.426 61.111 0.00 0.00 46.05 5.52
689 825 2.881352 CGTTCGGCTTCTCTCCGC 60.881 66.667 0.00 0.00 46.05 5.54
691 827 1.807573 CTGCGTTCGGCTTCTCTCC 60.808 63.158 0.00 0.00 44.05 3.71
692 828 2.448705 GCTGCGTTCGGCTTCTCTC 61.449 63.158 0.00 0.00 44.05 3.20
693 829 2.433318 GCTGCGTTCGGCTTCTCT 60.433 61.111 0.00 0.00 44.05 3.10
694 830 3.491652 GGCTGCGTTCGGCTTCTC 61.492 66.667 0.00 0.00 44.02 2.87
695 831 2.238847 TATGGCTGCGTTCGGCTTCT 62.239 55.000 0.00 0.00 44.02 2.85
696 832 1.160329 ATATGGCTGCGTTCGGCTTC 61.160 55.000 0.00 0.00 44.02 3.86
697 833 0.105964 TATATGGCTGCGTTCGGCTT 59.894 50.000 0.00 0.00 44.02 4.35
698 834 0.105964 TTATATGGCTGCGTTCGGCT 59.894 50.000 0.00 0.00 44.02 5.52
699 835 1.128692 GATTATATGGCTGCGTTCGGC 59.871 52.381 0.00 0.00 43.83 5.54
700 836 1.732259 GGATTATATGGCTGCGTTCGG 59.268 52.381 0.00 0.00 0.00 4.30
701 837 1.732259 GGGATTATATGGCTGCGTTCG 59.268 52.381 0.00 0.00 0.00 3.95
702 838 2.744202 CAGGGATTATATGGCTGCGTTC 59.256 50.000 0.00 0.00 0.00 3.95
703 839 2.371841 TCAGGGATTATATGGCTGCGTT 59.628 45.455 0.00 0.00 0.00 4.84
704 840 1.977854 TCAGGGATTATATGGCTGCGT 59.022 47.619 0.00 0.00 0.00 5.24
705 841 2.768253 TCAGGGATTATATGGCTGCG 57.232 50.000 0.00 0.00 0.00 5.18
706 842 4.639310 CAGAATCAGGGATTATATGGCTGC 59.361 45.833 0.00 0.00 31.89 5.25
707 843 6.058553 TCAGAATCAGGGATTATATGGCTG 57.941 41.667 0.00 0.00 31.89 4.85
708 844 6.905067 ATCAGAATCAGGGATTATATGGCT 57.095 37.500 0.00 0.00 31.89 4.75
709 845 7.344913 AGAATCAGAATCAGGGATTATATGGC 58.655 38.462 0.00 0.00 31.89 4.40
766 902 0.680061 ACCGGTGGTTTCTCTCTCAC 59.320 55.000 6.12 0.00 27.29 3.51
994 1135 4.562425 GGCGGATCCCATGGCGAA 62.562 66.667 6.09 0.00 0.00 4.70
1112 1253 2.116983 ATCATCCCCATCCGGCTTCG 62.117 60.000 0.00 0.00 0.00 3.79
1319 1460 3.258123 GGCACAACTTCATTACCAACCAT 59.742 43.478 0.00 0.00 0.00 3.55
1422 1563 5.412594 TGTAGCTTTTGATCCTAACAGCAAG 59.587 40.000 0.00 0.00 0.00 4.01
1423 1564 5.312895 TGTAGCTTTTGATCCTAACAGCAA 58.687 37.500 0.00 0.00 0.00 3.91
1475 1616 0.825010 AGTGCTTTGGTGCTCCCTTG 60.825 55.000 1.59 0.00 0.00 3.61
1477 1618 0.036875 GTAGTGCTTTGGTGCTCCCT 59.963 55.000 1.59 0.00 0.00 4.20
1479 1620 1.807142 GAAGTAGTGCTTTGGTGCTCC 59.193 52.381 0.00 0.00 37.59 4.70
1565 1706 7.942341 TGCTTAAGGATCCTTTTACAAGAGAAA 59.058 33.333 31.45 14.41 37.47 2.52
1771 1913 6.237313 AGCGTCTTAACACAAGGAATAAAC 57.763 37.500 0.00 0.00 0.00 2.01
1782 1924 2.748461 TGTGCAAAGCGTCTTAACAC 57.252 45.000 13.20 13.20 0.00 3.32
1955 2097 8.185506 TGTCAATTAGTAAGGTGTAACTGAGA 57.814 34.615 0.00 0.00 36.74 3.27
2557 2699 6.759827 TCAACCTTCCGATAAGCATTAACTAC 59.240 38.462 0.00 0.00 32.17 2.73
2678 2821 8.626526 GGAGTAAAATAGAAGTCACCAAACAAA 58.373 33.333 0.00 0.00 0.00 2.83
2910 3054 5.530915 GTCTGTGCCCTATATAAATGTGCAA 59.469 40.000 0.00 0.00 0.00 4.08
2911 3055 5.063204 GTCTGTGCCCTATATAAATGTGCA 58.937 41.667 0.00 0.00 0.00 4.57
2912 3056 5.308825 AGTCTGTGCCCTATATAAATGTGC 58.691 41.667 0.00 0.00 0.00 4.57
3019 3163 2.422479 GTGATGCAGGTAGAGTACGACA 59.578 50.000 0.00 0.00 0.00 4.35
3023 3167 2.108168 TGGGTGATGCAGGTAGAGTAC 58.892 52.381 0.00 0.00 0.00 2.73
3077 3221 8.088981 GGAACAAATAGACAACTACAGAGAAGA 58.911 37.037 0.00 0.00 0.00 2.87
3111 3255 4.724399 TGGACTCCTGTGCAGAATTTAAA 58.276 39.130 0.02 0.00 39.59 1.52
3131 3275 5.458041 AACACATCAACAGAAATTCCTGG 57.542 39.130 0.00 0.00 38.44 4.45
3146 3290 6.366061 GGGCAAAAACTGAAGATAAACACATC 59.634 38.462 0.00 0.00 0.00 3.06
3194 3338 4.039245 ACGTGGTCAGGGAACATGATATAG 59.961 45.833 10.25 0.00 38.42 1.31
3218 3362 2.743183 GCCACAACACTAGCCAGATAGG 60.743 54.545 0.00 0.00 41.84 2.57
3227 3371 3.599343 TGAAGCATAGCCACAACACTAG 58.401 45.455 0.00 0.00 0.00 2.57
3290 3434 8.439286 TGTTTCAAGTCAAAACATTAAACAAGC 58.561 29.630 0.00 0.00 40.64 4.01
3453 3601 4.787598 CTGAAACTGTAAACATCACTGGC 58.212 43.478 0.00 0.00 0.00 4.85
3455 3603 4.024893 ACGCTGAAACTGTAAACATCACTG 60.025 41.667 0.00 0.00 0.00 3.66
3480 3628 5.984926 ACAAAATGCACAAATCTTACAGTGG 59.015 36.000 0.00 0.00 32.80 4.00
3560 3708 7.044181 TGATTCTAAGCATAAGTTGAGTCCAG 58.956 38.462 0.00 0.00 0.00 3.86
3689 3837 8.332464 CGTTGTCAACACAAAGAGTAGATAAAA 58.668 33.333 15.79 0.00 44.32 1.52
3865 4013 4.032960 ACCTACATGCCATTCAAACAGA 57.967 40.909 0.00 0.00 0.00 3.41
3873 4021 3.763897 GGAAGTTCAACCTACATGCCATT 59.236 43.478 5.01 0.00 0.00 3.16
3903 4051 6.039382 GGATGGGCTTGTAAACTTAAGTATGG 59.961 42.308 8.92 0.00 0.00 2.74
3937 4085 7.451566 CCTCCCCAAATTAATCCTTTATACCAG 59.548 40.741 0.00 0.00 0.00 4.00
4008 4156 3.838244 AGCGACATAAAGGAATGGCTA 57.162 42.857 0.00 0.00 32.27 3.93
4009 4157 2.684881 CAAGCGACATAAAGGAATGGCT 59.315 45.455 0.00 0.00 32.27 4.75
4147 4295 9.740710 GCCTGTCTTAATTTCCCTTATACATAT 57.259 33.333 0.00 0.00 0.00 1.78
4153 4301 7.462590 GGATAGCCTGTCTTAATTTCCCTTAT 58.537 38.462 0.00 0.00 0.00 1.73
4230 4378 6.127810 TGAGCAAATAGTGATTGATCAAGC 57.872 37.500 16.73 16.73 46.58 4.01
4234 4382 7.012138 AGTCATGTGAGCAAATAGTGATTGATC 59.988 37.037 0.00 0.00 42.09 2.92
4288 4436 9.178427 GCTTGCATTCTCATAGTAAATCAATTC 57.822 33.333 0.00 0.00 0.00 2.17
4289 4437 8.910944 AGCTTGCATTCTCATAGTAAATCAATT 58.089 29.630 0.00 0.00 0.00 2.32
4290 4438 8.350722 CAGCTTGCATTCTCATAGTAAATCAAT 58.649 33.333 0.00 0.00 0.00 2.57
4291 4439 7.553760 TCAGCTTGCATTCTCATAGTAAATCAA 59.446 33.333 0.00 0.00 0.00 2.57
4292 4440 7.049754 TCAGCTTGCATTCTCATAGTAAATCA 58.950 34.615 0.00 0.00 0.00 2.57
4293 4441 7.488187 TCAGCTTGCATTCTCATAGTAAATC 57.512 36.000 0.00 0.00 0.00 2.17
4294 4442 8.997323 GTATCAGCTTGCATTCTCATAGTAAAT 58.003 33.333 0.00 0.00 0.00 1.40
4295 4443 7.986889 TGTATCAGCTTGCATTCTCATAGTAAA 59.013 33.333 0.00 0.00 0.00 2.01
4296 4444 7.500141 TGTATCAGCTTGCATTCTCATAGTAA 58.500 34.615 0.00 0.00 0.00 2.24
4297 4445 7.054491 TGTATCAGCTTGCATTCTCATAGTA 57.946 36.000 0.00 0.00 0.00 1.82
4298 4446 5.922053 TGTATCAGCTTGCATTCTCATAGT 58.078 37.500 0.00 0.00 0.00 2.12
4299 4447 7.201539 GCTATGTATCAGCTTGCATTCTCATAG 60.202 40.741 15.30 15.30 36.07 2.23
4300 4448 6.592994 GCTATGTATCAGCTTGCATTCTCATA 59.407 38.462 0.00 0.00 36.07 2.15
4301 4449 5.411977 GCTATGTATCAGCTTGCATTCTCAT 59.588 40.000 0.00 0.00 36.07 2.90
4302 4450 4.753610 GCTATGTATCAGCTTGCATTCTCA 59.246 41.667 0.00 0.00 36.07 3.27
4303 4451 4.753610 TGCTATGTATCAGCTTGCATTCTC 59.246 41.667 0.00 0.00 39.83 2.87
4304 4452 4.711399 TGCTATGTATCAGCTTGCATTCT 58.289 39.130 0.00 0.00 39.83 2.40
4345 4510 3.641434 AAGATAGTGTTCAGCCTGCAT 57.359 42.857 0.00 0.00 0.00 3.96
4624 4789 7.860373 TGTCAAATACTCAAATGTGTTGTAAGC 59.140 33.333 0.00 0.00 0.00 3.09
4739 4904 8.637986 CCCAGTTAAGGCTAATTAATGCATTAA 58.362 33.333 28.99 28.99 41.15 1.40
4740 4905 7.782644 ACCCAGTTAAGGCTAATTAATGCATTA 59.217 33.333 15.21 15.21 34.92 1.90
4741 4906 6.611236 ACCCAGTTAAGGCTAATTAATGCATT 59.389 34.615 17.56 17.56 37.04 3.56
4742 4907 6.136155 ACCCAGTTAAGGCTAATTAATGCAT 58.864 36.000 0.00 0.00 0.00 3.96
4743 4908 5.515106 ACCCAGTTAAGGCTAATTAATGCA 58.485 37.500 0.00 0.00 0.00 3.96
5047 5252 7.587037 TCCAAAAATATTAGGATTGCTGAGG 57.413 36.000 0.00 0.00 0.00 3.86
5049 5254 8.632679 GTGATCCAAAAATATTAGGATTGCTGA 58.367 33.333 14.62 3.29 40.80 4.26
5073 5285 5.505173 AAACACAAGTTCAGAAGATGGTG 57.495 39.130 2.42 2.42 36.84 4.17
5235 5447 1.865340 GAACACTTGAACCGAGACCAC 59.135 52.381 0.00 0.00 0.00 4.16
5566 5780 2.416747 TGAGAGAACAATTCGTGCAGG 58.583 47.619 0.00 0.00 34.02 4.85
5571 5785 5.923733 ACTCCTATGAGAGAACAATTCGT 57.076 39.130 1.64 0.00 41.42 3.85
5608 5822 3.790437 CCAGATCGGCCAGGCACT 61.790 66.667 15.19 3.78 43.88 4.40
5692 5906 0.774276 TGTGGTGATAAAGGGTGGCA 59.226 50.000 0.00 0.00 0.00 4.92
5723 5937 0.040067 GGAGAAACCAAGCAAGTGCG 60.040 55.000 0.00 0.00 41.65 5.34
5735 5949 0.168128 CGGCATCCAAACGGAGAAAC 59.832 55.000 0.00 0.00 35.52 2.78
5743 5957 1.595093 CCTCAACCCGGCATCCAAAC 61.595 60.000 0.00 0.00 0.00 2.93
5762 5976 5.823045 TCACTTCAGGAAAAGAAAACTCTCC 59.177 40.000 0.00 0.00 0.00 3.71
5764 5978 5.294552 CGTCACTTCAGGAAAAGAAAACTCT 59.705 40.000 0.00 0.00 0.00 3.24
5766 5980 4.941873 ACGTCACTTCAGGAAAAGAAAACT 59.058 37.500 0.00 0.00 0.00 2.66
5767 5981 5.231265 ACGTCACTTCAGGAAAAGAAAAC 57.769 39.130 0.00 0.00 0.00 2.43
5770 5984 3.554324 CGAACGTCACTTCAGGAAAAGAA 59.446 43.478 0.00 0.00 0.00 2.52
5771 5985 3.120792 CGAACGTCACTTCAGGAAAAGA 58.879 45.455 0.00 0.00 0.00 2.52
5775 5989 2.667448 CGATCGAACGTCACTTCAGGAA 60.667 50.000 10.26 0.00 0.00 3.36
5776 5990 1.135774 CGATCGAACGTCACTTCAGGA 60.136 52.381 10.26 0.00 0.00 3.86
5777 5991 1.260206 CGATCGAACGTCACTTCAGG 58.740 55.000 10.26 0.00 0.00 3.86
5778 5992 0.635731 GCGATCGAACGTCACTTCAG 59.364 55.000 21.57 0.00 35.59 3.02
5779 5993 0.731514 GGCGATCGAACGTCACTTCA 60.732 55.000 21.57 0.00 37.83 3.02
5780 5994 0.456312 AGGCGATCGAACGTCACTTC 60.456 55.000 21.76 1.13 40.49 3.01
5784 5998 2.092291 GCAAGGCGATCGAACGTCA 61.092 57.895 21.76 0.00 40.49 4.35
5829 7874 7.541162 CCATCAAGCTTAATGATTTTCTCACA 58.459 34.615 11.43 0.00 36.48 3.58
5880 7925 0.950836 TTGTTGTGGCCAGATTGTCG 59.049 50.000 5.11 0.00 0.00 4.35
5902 7947 0.038892 GTGGTTCTTGTAGGCGACGA 60.039 55.000 0.00 0.00 0.00 4.20
5903 7948 0.319211 TGTGGTTCTTGTAGGCGACG 60.319 55.000 0.00 0.00 0.00 5.12
5904 7949 1.732259 CATGTGGTTCTTGTAGGCGAC 59.268 52.381 0.00 0.00 0.00 5.19
5926 7971 3.064207 GCCACACACTCGTCAGAATTTA 58.936 45.455 0.00 0.00 0.00 1.40
5932 7977 2.313172 GCTGCCACACACTCGTCAG 61.313 63.158 0.00 0.00 0.00 3.51
5988 8034 1.067669 GTCGAGTATGCATCTGAGCCA 59.932 52.381 0.19 0.00 0.00 4.75
5989 8035 1.067669 TGTCGAGTATGCATCTGAGCC 59.932 52.381 0.19 0.00 0.00 4.70
5995 8041 1.777101 GCCTCTGTCGAGTATGCATC 58.223 55.000 0.19 0.00 35.43 3.91
6004 8050 1.531423 ACTAACTTCGCCTCTGTCGA 58.469 50.000 0.00 0.00 0.00 4.20
6018 8064 4.535526 ATGCATGTTTTGGGGAACTAAC 57.464 40.909 0.00 0.00 0.00 2.34
6027 8073 6.534793 GGACAAGGTTATTATGCATGTTTTGG 59.465 38.462 10.16 0.00 0.00 3.28
6033 8079 5.833406 TGTGGACAAGGTTATTATGCATG 57.167 39.130 10.16 0.00 0.00 4.06
6040 8086 6.183360 CCTTTCCTTTTGTGGACAAGGTTATT 60.183 38.462 0.00 0.00 40.59 1.40
6056 8128 2.357952 GACGTTTGTCTGCCTTTCCTTT 59.642 45.455 0.00 0.00 42.08 3.11
6058 8130 1.134220 TGACGTTTGTCTGCCTTTCCT 60.134 47.619 0.00 0.00 45.70 3.36
6063 8135 0.179094 TCGTTGACGTTTGTCTGCCT 60.179 50.000 3.25 0.00 45.70 4.75
6100 8172 8.804204 TCTCGTTTCTCTTTAATAGTTTCTCCT 58.196 33.333 0.00 0.00 0.00 3.69
6109 8181 7.283580 CCCTCTCTCTCTCGTTTCTCTTTAATA 59.716 40.741 0.00 0.00 0.00 0.98
6111 8183 5.416326 CCCTCTCTCTCTCGTTTCTCTTTAA 59.584 44.000 0.00 0.00 0.00 1.52
6112 8184 4.944930 CCCTCTCTCTCTCGTTTCTCTTTA 59.055 45.833 0.00 0.00 0.00 1.85
6114 8186 3.009695 TCCCTCTCTCTCTCGTTTCTCTT 59.990 47.826 0.00 0.00 0.00 2.85
6118 8190 2.681344 GTCTCCCTCTCTCTCTCGTTTC 59.319 54.545 0.00 0.00 0.00 2.78
6119 8191 2.040545 TGTCTCCCTCTCTCTCTCGTTT 59.959 50.000 0.00 0.00 0.00 3.60
6120 8192 1.631388 TGTCTCCCTCTCTCTCTCGTT 59.369 52.381 0.00 0.00 0.00 3.85
6121 8193 1.209504 CTGTCTCCCTCTCTCTCTCGT 59.790 57.143 0.00 0.00 0.00 4.18
6122 8194 1.484653 TCTGTCTCCCTCTCTCTCTCG 59.515 57.143 0.00 0.00 0.00 4.04
6124 8196 2.845659 TCTCTGTCTCCCTCTCTCTCT 58.154 52.381 0.00 0.00 0.00 3.10
6125 8197 3.054361 ACTTCTCTGTCTCCCTCTCTCTC 60.054 52.174 0.00 0.00 0.00 3.20
6126 8198 2.919602 ACTTCTCTGTCTCCCTCTCTCT 59.080 50.000 0.00 0.00 0.00 3.10
6127 8199 3.366052 ACTTCTCTGTCTCCCTCTCTC 57.634 52.381 0.00 0.00 0.00 3.20
6128 8200 4.938575 TTACTTCTCTGTCTCCCTCTCT 57.061 45.455 0.00 0.00 0.00 3.10
6129 8201 5.479027 ACTTTTACTTCTCTGTCTCCCTCTC 59.521 44.000 0.00 0.00 0.00 3.20
6130 8202 5.245075 CACTTTTACTTCTCTGTCTCCCTCT 59.755 44.000 0.00 0.00 0.00 3.69
6132 8204 5.148502 TCACTTTTACTTCTCTGTCTCCCT 58.851 41.667 0.00 0.00 0.00 4.20
6133 8205 5.470047 TCACTTTTACTTCTCTGTCTCCC 57.530 43.478 0.00 0.00 0.00 4.30
6134 8206 7.971183 AATTCACTTTTACTTCTCTGTCTCC 57.029 36.000 0.00 0.00 0.00 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.