Multiple sequence alignment - TraesCS4A01G129000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G129000 chr4A 100.000 5036 0 0 1 5036 166296480 166301515 0.000000e+00 9300.0
1 TraesCS4A01G129000 chr4A 91.011 89 8 0 4935 5023 166301274 166301362 2.460000e-23 121.0
2 TraesCS4A01G129000 chr4A 82.895 76 11 2 4002 4076 230668578 230668652 3.250000e-07 67.6
3 TraesCS4A01G129000 chr4D 96.703 3427 70 19 793 4188 308952762 308949348 0.000000e+00 5662.0
4 TraesCS4A01G129000 chr4D 93.953 430 15 1 4618 5036 308949363 308948934 1.530000e-179 640.0
5 TraesCS4A01G129000 chr4D 85.600 250 32 4 4686 4932 277383312 277383560 5.000000e-65 259.0
6 TraesCS4A01G129000 chr4D 75.065 385 64 21 4250 4608 487202190 487202568 3.140000e-32 150.0
7 TraesCS4A01G129000 chr4D 89.888 89 9 0 4935 5023 308949175 308949087 1.150000e-21 115.0
8 TraesCS4A01G129000 chr4D 82.243 107 14 5 3998 4101 12358491 12358387 2.500000e-13 87.9
9 TraesCS4A01G129000 chr4B 95.620 2329 49 25 655 2956 386027681 386025379 0.000000e+00 3687.0
10 TraesCS4A01G129000 chr4B 96.326 1252 22 10 2948 4178 386023971 386022723 0.000000e+00 2036.0
11 TraesCS4A01G129000 chr4B 86.553 528 34 15 134 655 386047510 386047014 9.530000e-152 547.0
12 TraesCS4A01G129000 chr4B 82.822 326 48 7 4615 4934 242709344 242709667 8.250000e-73 285.0
13 TraesCS4A01G129000 chr4B 92.670 191 14 0 1 191 386047708 386047518 4.970000e-70 276.0
14 TraesCS4A01G129000 chr4B 97.279 147 3 1 4888 5034 386022487 386022342 1.080000e-61 248.0
15 TraesCS4A01G129000 chr4B 83.333 168 28 0 24 191 539975100 539974933 6.750000e-34 156.0
16 TraesCS4A01G129000 chr4B 80.729 192 35 2 1 191 28696286 28696476 1.130000e-31 148.0
17 TraesCS4A01G129000 chr4B 83.908 87 10 2 230 316 299679909 299679991 4.180000e-11 80.5
18 TraesCS4A01G129000 chr4B 83.908 87 10 2 230 316 654588860 654588942 4.180000e-11 80.5
19 TraesCS4A01G129000 chr1D 87.327 434 49 5 4182 4614 84806682 84806254 4.530000e-135 492.0
20 TraesCS4A01G129000 chr1D 92.949 156 11 0 4179 4334 141898335 141898490 1.410000e-55 228.0
21 TraesCS4A01G129000 chr1D 83.459 133 18 4 476 606 366207357 366207227 2.460000e-23 121.0
22 TraesCS4A01G129000 chr2D 84.362 486 40 14 4172 4624 645179269 645179751 1.290000e-120 444.0
23 TraesCS4A01G129000 chr2D 81.416 113 16 4 4000 4109 60782950 60782840 2.500000e-13 87.9
24 TraesCS4A01G129000 chr2D 80.556 108 14 6 4511 4615 442288974 442289077 5.410000e-10 76.8
25 TraesCS4A01G129000 chr1A 86.461 421 35 9 4615 5023 521976336 521976746 4.630000e-120 442.0
26 TraesCS4A01G129000 chr1A 81.955 133 20 4 476 606 465532413 465532543 5.330000e-20 110.0
27 TraesCS4A01G129000 chr3D 84.416 308 36 7 4629 4934 562531908 562532205 4.930000e-75 292.0
28 TraesCS4A01G129000 chr3D 86.937 222 24 4 4712 4929 84114096 84114316 1.400000e-60 244.0
29 TraesCS4A01G129000 chr3D 84.737 190 25 4 4250 4438 456536135 456536321 2.390000e-43 187.0
30 TraesCS4A01G129000 chr3D 85.057 87 9 2 230 316 380454807 380454889 8.980000e-13 86.1
31 TraesCS4A01G129000 chrUn 84.818 303 30 2 4325 4611 93046263 93046565 1.770000e-74 291.0
32 TraesCS4A01G129000 chrUn 91.892 148 12 0 4179 4326 50135651 50135798 1.840000e-49 207.0
33 TraesCS4A01G129000 chrUn 81.618 272 28 15 4319 4573 378498145 378497879 6.610000e-49 206.0
34 TraesCS4A01G129000 chr3A 83.117 308 38 9 4629 4934 697638027 697638322 8.310000e-68 268.0
35 TraesCS4A01G129000 chr3A 83.402 241 38 2 4686 4924 724890205 724889965 6.560000e-54 222.0
36 TraesCS4A01G129000 chr3A 83.920 199 21 9 4250 4445 599327817 599328007 4.010000e-41 180.0
37 TraesCS4A01G129000 chr5D 85.317 252 30 5 4686 4935 387662375 387662621 2.330000e-63 254.0
38 TraesCS4A01G129000 chr5D 80.189 106 13 7 4002 4103 536284702 536284601 6.990000e-09 73.1
39 TraesCS4A01G129000 chr7D 92.308 156 11 1 4179 4334 58994542 58994696 2.360000e-53 220.0
40 TraesCS4A01G129000 chr7D 80.882 204 30 8 4 205 87771124 87770928 8.730000e-33 152.0
41 TraesCS4A01G129000 chr7D 80.117 171 25 8 4270 4438 215060773 215060610 8.860000e-23 119.0
42 TraesCS4A01G129000 chr7D 76.382 199 32 12 3125 3318 217874989 217875177 5.370000e-15 93.5
43 TraesCS4A01G129000 chr7D 94.118 51 3 0 4561 4611 189713738 189713688 1.500000e-10 78.7
44 TraesCS4A01G129000 chr7A 91.503 153 11 2 4179 4331 38206941 38207091 5.110000e-50 209.0
45 TraesCS4A01G129000 chr7A 79.679 187 29 7 4426 4609 657093787 657093967 5.290000e-25 126.0
46 TraesCS4A01G129000 chr1B 90.385 156 15 0 4179 4334 196060300 196060455 6.610000e-49 206.0
47 TraesCS4A01G129000 chr1B 75.168 298 36 19 476 765 491393104 491393371 6.900000e-19 106.0
48 TraesCS4A01G129000 chr1B 85.057 87 9 2 230 316 175675951 175675869 8.980000e-13 86.1
49 TraesCS4A01G129000 chr1B 83.908 87 10 2 230 316 117939744 117939826 4.180000e-11 80.5
50 TraesCS4A01G129000 chr1B 83.529 85 10 2 230 314 118335479 118335399 5.410000e-10 76.8
51 TraesCS4A01G129000 chr6D 85.542 166 24 0 18 183 98138369 98138204 1.860000e-39 174.0
52 TraesCS4A01G129000 chr3B 82.723 191 27 6 18 204 298270719 298270907 1.120000e-36 165.0
53 TraesCS4A01G129000 chr3B 81.818 132 19 4 4275 4404 92851761 92851889 6.900000e-19 106.0
54 TraesCS4A01G129000 chr3B 85.057 87 9 2 230 316 53214085 53214167 8.980000e-13 86.1
55 TraesCS4A01G129000 chr3B 83.750 80 9 4 4008 4085 797634114 797634037 6.990000e-09 73.1
56 TraesCS4A01G129000 chr6B 83.240 179 27 3 28 205 692057579 692057403 1.450000e-35 161.0
57 TraesCS4A01G129000 chr2A 82.105 190 28 6 19 204 49424286 49424473 1.880000e-34 158.0
58 TraesCS4A01G129000 chr5A 81.720 186 34 0 18 203 74937375 74937560 6.750000e-34 156.0
59 TraesCS4A01G129000 chr7B 84.706 85 9 2 232 316 719135102 719135022 1.160000e-11 82.4
60 TraesCS4A01G129000 chr7B 80.952 105 15 5 4002 4103 329794162 329794264 1.500000e-10 78.7
61 TraesCS4A01G129000 chr6A 79.439 107 16 5 4005 4109 506636503 506636401 2.520000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G129000 chr4A 166296480 166301515 5035 False 4710.500000 9300 95.505500 1 5036 2 chr4A.!!$F2 5035
1 TraesCS4A01G129000 chr4D 308948934 308952762 3828 True 2139.000000 5662 93.514667 793 5036 3 chr4D.!!$R2 4243
2 TraesCS4A01G129000 chr4B 386022342 386027681 5339 True 1990.333333 3687 96.408333 655 5034 3 chr4B.!!$R2 4379
3 TraesCS4A01G129000 chr4B 386047014 386047708 694 True 411.500000 547 89.611500 1 655 2 chr4B.!!$R3 654

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
984 1084 0.187606 AAGTTCCAAGTCCAACCCCC 59.812 55.000 0.00 0.0 0.00 5.40 F
1088 1193 2.138320 CATTCGTCCTCATCCCAATCG 58.862 52.381 0.00 0.0 0.00 3.34 F
1265 1370 2.272146 CGGATGAACCTGTGGGGG 59.728 66.667 0.00 0.0 40.03 5.40 F
3239 4782 2.700354 TGGGCCCACATGTCAGATATA 58.300 47.619 24.45 0.0 0.00 0.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1854 1959 6.571154 GCGCAATCAAATTTGAGAAAAGAAAC 59.429 34.615 24.17 5.95 41.08 2.78 R
2914 3030 7.686434 ACCAGCAGTTTTAATTCTAGGTCTTA 58.314 34.615 0.00 0.00 0.00 2.10 R
3666 5210 1.064463 GGATTTCATCACCTCCTGGCA 60.064 52.381 0.00 0.00 36.63 4.92 R
4231 5790 0.031449 GCTCACTACGGGCATCTCTC 59.969 60.000 0.00 0.00 0.00 3.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 4.576330 ATTTGAACTCTTGGGACCTAGG 57.424 45.455 7.41 7.41 0.00 3.02
124 125 8.611654 TTTAGTGTTAGTAATGAGTGAAACCC 57.388 34.615 0.00 0.00 37.80 4.11
125 126 6.182507 AGTGTTAGTAATGAGTGAAACCCA 57.817 37.500 0.00 0.00 37.80 4.51
140 141 8.250143 AGTGAAACCCATTTTCTGAAATAAGT 57.750 30.769 3.31 0.00 43.70 2.24
217 284 8.899427 TTGGTTTTCATGCTGATTATTTCAAA 57.101 26.923 0.00 0.00 32.78 2.69
254 321 6.931281 TGAGTGGAATCTAGTTTTGAGACAAG 59.069 38.462 0.00 0.00 0.00 3.16
368 439 9.833894 CAATTTTTGACTGTAATCTTTTGTTCG 57.166 29.630 0.00 0.00 0.00 3.95
373 444 7.169035 TGACTGTAATCTTTTGTTCGTACAC 57.831 36.000 0.00 0.00 32.98 2.90
379 450 4.702247 TCTTTTGTTCGTACACATGACG 57.298 40.909 0.00 0.00 41.69 4.35
486 566 8.652810 AGTGGAATCAACTTTTTGAAAATGAG 57.347 30.769 10.07 0.00 45.01 2.90
487 567 8.260114 AGTGGAATCAACTTTTTGAAAATGAGT 58.740 29.630 10.07 2.02 45.01 3.41
488 568 8.330302 GTGGAATCAACTTTTTGAAAATGAGTG 58.670 33.333 10.07 7.71 45.01 3.51
489 569 8.256605 TGGAATCAACTTTTTGAAAATGAGTGA 58.743 29.630 10.07 11.73 45.01 3.41
490 570 9.097257 GGAATCAACTTTTTGAAAATGAGTGAA 57.903 29.630 10.07 0.00 45.01 3.18
572 653 6.314899 TGGTTTTTGTGAAACCCCTTATTT 57.685 33.333 15.77 0.00 46.93 1.40
573 654 6.722328 TGGTTTTTGTGAAACCCCTTATTTT 58.278 32.000 15.77 0.00 46.93 1.82
575 656 7.988028 TGGTTTTTGTGAAACCCCTTATTTTAG 59.012 33.333 15.77 0.00 46.93 1.85
576 657 7.988599 GGTTTTTGTGAAACCCCTTATTTTAGT 59.011 33.333 9.05 0.00 42.89 2.24
577 658 8.822855 GTTTTTGTGAAACCCCTTATTTTAGTG 58.177 33.333 0.00 0.00 34.36 2.74
578 659 7.663043 TTTGTGAAACCCCTTATTTTAGTGT 57.337 32.000 0.00 0.00 34.36 3.55
579 660 6.642707 TGTGAAACCCCTTATTTTAGTGTG 57.357 37.500 0.00 0.00 34.36 3.82
581 662 6.608002 TGTGAAACCCCTTATTTTAGTGTGTT 59.392 34.615 0.00 0.00 34.36 3.32
582 663 7.124448 TGTGAAACCCCTTATTTTAGTGTGTTT 59.876 33.333 0.00 0.00 34.36 2.83
598 679 6.265577 AGTGTGTTTATTGTGAAGTTGCTTC 58.734 36.000 2.22 2.22 40.54 3.86
599 680 5.171337 GTGTGTTTATTGTGAAGTTGCTTCG 59.829 40.000 4.69 0.00 42.78 3.79
674 756 6.429692 CACATATACCACTTCTTGAAACCACA 59.570 38.462 0.00 0.00 0.00 4.17
675 757 7.121168 CACATATACCACTTCTTGAAACCACAT 59.879 37.037 0.00 0.00 0.00 3.21
950 1045 2.097038 CGCAGCTGAGTTCCTTCCG 61.097 63.158 20.43 3.82 0.00 4.30
984 1084 0.187606 AAGTTCCAAGTCCAACCCCC 59.812 55.000 0.00 0.00 0.00 5.40
1076 1181 3.055747 ACTTCTTCTTCCCTCATTCGTCC 60.056 47.826 0.00 0.00 0.00 4.79
1079 1184 2.231716 TCTTCCCTCATTCGTCCTCA 57.768 50.000 0.00 0.00 0.00 3.86
1088 1193 2.138320 CATTCGTCCTCATCCCAATCG 58.862 52.381 0.00 0.00 0.00 3.34
1107 1212 4.027755 CGGATCCCGGAATCAACG 57.972 61.111 0.73 0.00 44.15 4.10
1245 1350 4.994907 AAGGCGTTAGGTTTTGAAGTTT 57.005 36.364 0.00 0.00 0.00 2.66
1265 1370 2.272146 CGGATGAACCTGTGGGGG 59.728 66.667 0.00 0.00 40.03 5.40
1298 1403 5.710567 GGAGTATAATTTGGTGGGATTAGGC 59.289 44.000 0.00 0.00 0.00 3.93
1488 1593 9.626045 CTGTATGAATATATTCGTGCTTCAGTA 57.374 33.333 26.27 11.70 38.63 2.74
1499 1604 4.049186 CGTGCTTCAGTACACAACTAAGT 58.951 43.478 0.00 0.00 35.76 2.24
1854 1959 5.432885 AAAAGGAACAATTACACTGGTCG 57.567 39.130 0.00 0.00 30.81 4.79
2822 2938 6.293190 CGCTTCTGGTGTTGTTTACTCAATTA 60.293 38.462 0.00 0.00 0.00 1.40
3197 4735 6.084277 CGAAGAAAACTAAAATTTCTCCGGG 58.916 40.000 0.00 0.00 44.22 5.73
3198 4736 6.293790 CGAAGAAAACTAAAATTTCTCCGGGT 60.294 38.462 0.00 0.00 44.22 5.28
3239 4782 2.700354 TGGGCCCACATGTCAGATATA 58.300 47.619 24.45 0.00 0.00 0.86
3240 4783 3.259328 TGGGCCCACATGTCAGATATAT 58.741 45.455 24.45 0.00 0.00 0.86
3666 5210 2.958355 AGCTGCATTACTGTTTGGTTGT 59.042 40.909 1.02 0.00 0.00 3.32
3841 5385 2.087461 GGGGAATGGGGGCTCAGAT 61.087 63.158 0.00 0.00 0.00 2.90
3918 5476 6.016024 CCTTGTGGCTATATATTGTTGCATGT 60.016 38.462 0.00 0.00 0.00 3.21
3998 5556 4.846779 AATTTGAGGCGTTGTACATGTT 57.153 36.364 2.30 0.00 0.00 2.71
4199 5758 6.111768 AGCACTTTAGCTAAATGTCAATCG 57.888 37.500 18.93 7.68 44.50 3.34
4200 5759 5.874810 AGCACTTTAGCTAAATGTCAATCGA 59.125 36.000 18.93 0.00 44.50 3.59
4201 5760 5.960105 GCACTTTAGCTAAATGTCAATCGAC 59.040 40.000 18.93 0.98 42.93 4.20
4202 5761 6.478588 CACTTTAGCTAAATGTCAATCGACC 58.521 40.000 18.93 0.00 41.85 4.79
4203 5762 5.291128 ACTTTAGCTAAATGTCAATCGACCG 59.709 40.000 18.93 5.68 41.85 4.79
4204 5763 3.520290 AGCTAAATGTCAATCGACCGA 57.480 42.857 0.00 0.00 41.85 4.69
4205 5764 4.060038 AGCTAAATGTCAATCGACCGAT 57.940 40.909 0.00 0.00 41.85 4.18
4206 5765 4.442706 AGCTAAATGTCAATCGACCGATT 58.557 39.130 11.39 11.39 44.73 3.34
4207 5766 4.876107 AGCTAAATGTCAATCGACCGATTT 59.124 37.500 14.16 3.79 42.30 2.17
4208 5767 5.354234 AGCTAAATGTCAATCGACCGATTTT 59.646 36.000 14.16 8.96 42.30 1.82
4209 5768 5.452302 GCTAAATGTCAATCGACCGATTTTG 59.548 40.000 14.16 7.09 42.30 2.44
4210 5769 5.621197 AAATGTCAATCGACCGATTTTGA 57.379 34.783 14.16 9.16 42.30 2.69
4211 5770 5.621197 AATGTCAATCGACCGATTTTGAA 57.379 34.783 14.16 2.83 42.30 2.69
4212 5771 5.621197 ATGTCAATCGACCGATTTTGAAA 57.379 34.783 14.16 7.77 42.30 2.69
4213 5772 5.621197 TGTCAATCGACCGATTTTGAAAT 57.379 34.783 14.16 0.00 42.30 2.17
4214 5773 6.729391 TGTCAATCGACCGATTTTGAAATA 57.271 33.333 14.16 1.34 42.30 1.40
4215 5774 6.771076 TGTCAATCGACCGATTTTGAAATAG 58.229 36.000 14.16 2.52 42.30 1.73
4216 5775 6.183360 TGTCAATCGACCGATTTTGAAATAGG 60.183 38.462 14.16 12.30 42.30 2.57
4217 5776 5.295787 TCAATCGACCGATTTTGAAATAGGG 59.704 40.000 14.16 10.80 43.08 3.53
4218 5777 4.210724 TCGACCGATTTTGAAATAGGGT 57.789 40.909 16.54 13.23 43.08 4.34
4219 5778 4.186159 TCGACCGATTTTGAAATAGGGTC 58.814 43.478 19.36 19.36 43.08 4.46
4220 5779 3.936453 CGACCGATTTTGAAATAGGGTCA 59.064 43.478 24.13 0.00 44.34 4.02
4221 5780 4.034048 CGACCGATTTTGAAATAGGGTCAG 59.966 45.833 24.13 17.70 44.34 3.51
4222 5781 4.918588 ACCGATTTTGAAATAGGGTCAGT 58.081 39.130 16.54 0.00 43.08 3.41
4223 5782 4.941873 ACCGATTTTGAAATAGGGTCAGTC 59.058 41.667 16.54 0.00 43.08 3.51
4224 5783 4.034048 CCGATTTTGAAATAGGGTCAGTCG 59.966 45.833 7.48 0.00 37.47 4.18
4225 5784 4.034048 CGATTTTGAAATAGGGTCAGTCGG 59.966 45.833 0.00 0.00 0.00 4.79
4226 5785 4.360951 TTTTGAAATAGGGTCAGTCGGT 57.639 40.909 0.00 0.00 0.00 4.69
4227 5786 4.360951 TTTGAAATAGGGTCAGTCGGTT 57.639 40.909 0.00 0.00 0.00 4.44
4228 5787 4.360951 TTGAAATAGGGTCAGTCGGTTT 57.639 40.909 0.00 0.00 0.00 3.27
4229 5788 4.360951 TGAAATAGGGTCAGTCGGTTTT 57.639 40.909 0.00 0.00 0.00 2.43
4230 5789 4.320870 TGAAATAGGGTCAGTCGGTTTTC 58.679 43.478 0.00 0.00 0.00 2.29
4231 5790 2.667473 ATAGGGTCAGTCGGTTTTCG 57.333 50.000 0.00 0.00 40.90 3.46
4232 5791 1.619654 TAGGGTCAGTCGGTTTTCGA 58.380 50.000 0.00 0.00 46.77 3.71
4240 5799 3.436001 TCGGTTTTCGAGAGATGCC 57.564 52.632 0.00 0.00 43.74 4.40
4241 5800 0.108329 TCGGTTTTCGAGAGATGCCC 60.108 55.000 0.00 0.00 43.74 5.36
4242 5801 1.421410 CGGTTTTCGAGAGATGCCCG 61.421 60.000 0.00 0.00 42.43 6.13
4243 5802 0.391263 GGTTTTCGAGAGATGCCCGT 60.391 55.000 0.00 0.00 41.60 5.28
4244 5803 1.134907 GGTTTTCGAGAGATGCCCGTA 60.135 52.381 0.00 0.00 41.60 4.02
4245 5804 2.194271 GTTTTCGAGAGATGCCCGTAG 58.806 52.381 0.00 0.00 41.60 3.51
4246 5805 1.471119 TTTCGAGAGATGCCCGTAGT 58.529 50.000 0.00 0.00 41.60 2.73
4247 5806 0.738975 TTCGAGAGATGCCCGTAGTG 59.261 55.000 0.00 0.00 41.60 2.74
4248 5807 0.107361 TCGAGAGATGCCCGTAGTGA 60.107 55.000 0.00 0.00 33.31 3.41
4249 5808 0.309302 CGAGAGATGCCCGTAGTGAG 59.691 60.000 0.00 0.00 0.00 3.51
4250 5809 0.031449 GAGAGATGCCCGTAGTGAGC 59.969 60.000 0.00 0.00 0.00 4.26
4251 5810 1.068250 GAGATGCCCGTAGTGAGCC 59.932 63.158 0.00 0.00 0.00 4.70
4252 5811 2.279517 GATGCCCGTAGTGAGCCG 60.280 66.667 0.00 0.00 0.00 5.52
4253 5812 3.792053 GATGCCCGTAGTGAGCCGG 62.792 68.421 0.00 0.00 43.82 6.13
4271 5830 3.528597 CGGAGGTAAAGAAGGAGAAGG 57.471 52.381 0.00 0.00 0.00 3.46
4272 5831 3.097614 CGGAGGTAAAGAAGGAGAAGGA 58.902 50.000 0.00 0.00 0.00 3.36
4273 5832 3.514309 CGGAGGTAAAGAAGGAGAAGGAA 59.486 47.826 0.00 0.00 0.00 3.36
4274 5833 4.382147 CGGAGGTAAAGAAGGAGAAGGAAG 60.382 50.000 0.00 0.00 0.00 3.46
4275 5834 4.080807 GGAGGTAAAGAAGGAGAAGGAAGG 60.081 50.000 0.00 0.00 0.00 3.46
4276 5835 3.847184 AGGTAAAGAAGGAGAAGGAAGGG 59.153 47.826 0.00 0.00 0.00 3.95
4277 5836 3.054287 GGTAAAGAAGGAGAAGGAAGGGG 60.054 52.174 0.00 0.00 0.00 4.79
4278 5837 0.995803 AAGAAGGAGAAGGAAGGGGC 59.004 55.000 0.00 0.00 0.00 5.80
4279 5838 0.120172 AGAAGGAGAAGGAAGGGGCT 59.880 55.000 0.00 0.00 0.00 5.19
4280 5839 0.544223 GAAGGAGAAGGAAGGGGCTC 59.456 60.000 0.00 0.00 0.00 4.70
4281 5840 1.268283 AAGGAGAAGGAAGGGGCTCG 61.268 60.000 0.00 0.00 0.00 5.03
4282 5841 2.188207 GAGAAGGAAGGGGCTCGC 59.812 66.667 0.00 0.00 0.00 5.03
4283 5842 3.393149 GAGAAGGAAGGGGCTCGCC 62.393 68.421 0.00 0.00 0.00 5.54
4284 5843 4.840005 GAAGGAAGGGGCTCGCCG 62.840 72.222 1.24 0.00 36.85 6.46
4301 5860 3.844161 CGGAGGACTACCCCAGTAT 57.156 57.895 0.00 0.00 37.72 2.12
4302 5861 1.618487 CGGAGGACTACCCCAGTATC 58.382 60.000 0.00 0.00 37.72 2.24
4303 5862 1.145325 CGGAGGACTACCCCAGTATCT 59.855 57.143 0.00 0.00 37.72 1.98
4304 5863 2.374504 CGGAGGACTACCCCAGTATCTA 59.625 54.545 0.00 0.00 37.72 1.98
4305 5864 3.010361 CGGAGGACTACCCCAGTATCTAT 59.990 52.174 0.00 0.00 37.72 1.98
4306 5865 4.602107 GGAGGACTACCCCAGTATCTATC 58.398 52.174 0.00 0.00 37.72 2.08
4307 5866 4.292836 GGAGGACTACCCCAGTATCTATCT 59.707 50.000 0.00 0.00 37.72 1.98
4308 5867 5.222379 GGAGGACTACCCCAGTATCTATCTT 60.222 48.000 0.00 0.00 37.72 2.40
4309 5868 6.011805 GGAGGACTACCCCAGTATCTATCTTA 60.012 46.154 0.00 0.00 37.72 2.10
4310 5869 7.034967 AGGACTACCCCAGTATCTATCTTAG 57.965 44.000 0.00 0.00 37.72 2.18
4311 5870 6.011451 AGGACTACCCCAGTATCTATCTTAGG 60.011 46.154 0.00 0.00 37.72 2.69
4312 5871 6.155247 ACTACCCCAGTATCTATCTTAGGG 57.845 45.833 0.00 0.00 34.98 3.53
4314 5873 5.435545 ACCCCAGTATCTATCTTAGGGTT 57.564 43.478 0.00 0.00 44.14 4.11
4315 5874 5.800653 ACCCCAGTATCTATCTTAGGGTTT 58.199 41.667 0.00 0.00 44.14 3.27
4316 5875 6.941915 ACCCCAGTATCTATCTTAGGGTTTA 58.058 40.000 0.00 0.00 44.14 2.01
4317 5876 7.017531 ACCCCAGTATCTATCTTAGGGTTTAG 58.982 42.308 0.00 0.00 44.14 1.85
4318 5877 6.440965 CCCCAGTATCTATCTTAGGGTTTAGG 59.559 46.154 0.00 0.00 32.90 2.69
4319 5878 6.440965 CCCAGTATCTATCTTAGGGTTTAGGG 59.559 46.154 0.00 0.00 0.00 3.53
4320 5879 7.017531 CCAGTATCTATCTTAGGGTTTAGGGT 58.982 42.308 0.00 0.00 0.00 4.34
4321 5880 7.038941 CCAGTATCTATCTTAGGGTTTAGGGTG 60.039 44.444 0.00 0.00 0.00 4.61
4322 5881 7.017531 AGTATCTATCTTAGGGTTTAGGGTGG 58.982 42.308 0.00 0.00 0.00 4.61
4323 5882 4.563782 TCTATCTTAGGGTTTAGGGTGGG 58.436 47.826 0.00 0.00 0.00 4.61
4324 5883 1.975471 TCTTAGGGTTTAGGGTGGGG 58.025 55.000 0.00 0.00 0.00 4.96
4325 5884 0.924090 CTTAGGGTTTAGGGTGGGGG 59.076 60.000 0.00 0.00 0.00 5.40
4326 5885 0.199216 TTAGGGTTTAGGGTGGGGGT 59.801 55.000 0.00 0.00 0.00 4.95
4327 5886 0.550638 TAGGGTTTAGGGTGGGGGTG 60.551 60.000 0.00 0.00 0.00 4.61
4328 5887 2.768045 GGTTTAGGGTGGGGGTGG 59.232 66.667 0.00 0.00 0.00 4.61
4329 5888 2.164967 GGTTTAGGGTGGGGGTGGT 61.165 63.158 0.00 0.00 0.00 4.16
4330 5889 1.076014 GTTTAGGGTGGGGGTGGTG 59.924 63.158 0.00 0.00 0.00 4.17
4331 5890 2.164279 TTTAGGGTGGGGGTGGTGG 61.164 63.158 0.00 0.00 0.00 4.61
4332 5891 2.955317 TTTAGGGTGGGGGTGGTGGT 62.955 60.000 0.00 0.00 0.00 4.16
4336 5895 4.299796 GTGGGGGTGGTGGTGCAT 62.300 66.667 0.00 0.00 0.00 3.96
4337 5896 3.516512 TGGGGGTGGTGGTGCATT 61.517 61.111 0.00 0.00 0.00 3.56
4338 5897 2.203773 GGGGGTGGTGGTGCATTT 60.204 61.111 0.00 0.00 0.00 2.32
4339 5898 2.282783 GGGGGTGGTGGTGCATTTC 61.283 63.158 0.00 0.00 0.00 2.17
4340 5899 2.282783 GGGGTGGTGGTGCATTTCC 61.283 63.158 0.00 0.00 0.00 3.13
4341 5900 2.282783 GGGTGGTGGTGCATTTCCC 61.283 63.158 0.00 0.00 0.00 3.97
4342 5901 2.282783 GGTGGTGGTGCATTTCCCC 61.283 63.158 0.00 0.00 0.00 4.81
4343 5902 2.282816 TGGTGGTGCATTTCCCCG 60.283 61.111 0.00 0.00 0.00 5.73
4344 5903 3.068064 GGTGGTGCATTTCCCCGG 61.068 66.667 0.00 0.00 0.00 5.73
4345 5904 2.034999 GTGGTGCATTTCCCCGGA 59.965 61.111 0.73 0.00 0.00 5.14
4346 5905 2.046285 GTGGTGCATTTCCCCGGAG 61.046 63.158 0.73 0.00 0.00 4.63
4347 5906 2.227757 TGGTGCATTTCCCCGGAGA 61.228 57.895 0.73 0.00 0.00 3.71
4348 5907 1.001393 GGTGCATTTCCCCGGAGAA 60.001 57.895 0.73 0.00 0.00 2.87
4349 5908 0.610785 GGTGCATTTCCCCGGAGAAA 60.611 55.000 13.99 13.99 39.92 2.52
4350 5909 1.253100 GTGCATTTCCCCGGAGAAAA 58.747 50.000 15.62 6.76 39.11 2.29
4351 5910 1.616374 GTGCATTTCCCCGGAGAAAAA 59.384 47.619 15.62 1.67 39.11 1.94
4368 5927 1.271856 AAAACTTAAATGGGGGCGGG 58.728 50.000 0.00 0.00 0.00 6.13
4369 5928 1.261938 AAACTTAAATGGGGGCGGGC 61.262 55.000 0.00 0.00 0.00 6.13
4370 5929 2.837758 CTTAAATGGGGGCGGGCC 60.838 66.667 13.01 13.01 0.00 5.80
4371 5930 3.351885 TTAAATGGGGGCGGGCCT 61.352 61.111 20.88 2.28 36.10 5.19
4372 5931 2.002018 CTTAAATGGGGGCGGGCCTA 62.002 60.000 20.88 10.38 36.10 3.93
4373 5932 2.002018 TTAAATGGGGGCGGGCCTAG 62.002 60.000 20.88 0.00 36.10 3.02
4374 5933 2.918374 TAAATGGGGGCGGGCCTAGA 62.918 60.000 20.88 4.91 36.10 2.43
4379 5938 4.964241 GGGCGGGCCTAGAGGGAT 62.964 72.222 14.22 0.00 37.23 3.85
4380 5939 3.631046 GGCGGGCCTAGAGGGATG 61.631 72.222 0.84 0.00 37.23 3.51
4381 5940 2.844839 GCGGGCCTAGAGGGATGT 60.845 66.667 0.84 0.00 37.23 3.06
4382 5941 2.873525 GCGGGCCTAGAGGGATGTC 61.874 68.421 0.84 0.00 37.23 3.06
4383 5942 1.152440 CGGGCCTAGAGGGATGTCT 60.152 63.158 0.84 0.00 37.23 3.41
4384 5943 1.467678 CGGGCCTAGAGGGATGTCTG 61.468 65.000 0.84 0.00 37.23 3.51
4385 5944 1.124477 GGGCCTAGAGGGATGTCTGG 61.124 65.000 0.84 0.00 37.23 3.86
4386 5945 1.124477 GGCCTAGAGGGATGTCTGGG 61.124 65.000 0.00 0.00 45.77 4.45
4387 5946 1.124477 GCCTAGAGGGATGTCTGGGG 61.124 65.000 5.54 0.00 43.74 4.96
4388 5947 0.472734 CCTAGAGGGATGTCTGGGGG 60.473 65.000 0.00 0.00 40.66 5.40
4389 5948 1.074471 TAGAGGGATGTCTGGGGGC 60.074 63.158 0.00 0.00 0.00 5.80
4390 5949 2.946988 TAGAGGGATGTCTGGGGGCG 62.947 65.000 0.00 0.00 0.00 6.13
4411 5970 3.033419 GGCTAGACCGGTAGTAGGG 57.967 63.158 20.10 5.62 0.00 3.53
4412 5971 0.539207 GGCTAGACCGGTAGTAGGGG 60.539 65.000 20.10 4.73 0.00 4.79
4413 5972 1.177895 GCTAGACCGGTAGTAGGGGC 61.178 65.000 20.10 9.92 0.00 5.80
4414 5973 0.888285 CTAGACCGGTAGTAGGGGCG 60.888 65.000 7.34 0.00 36.05 6.13
4415 5974 2.343475 TAGACCGGTAGTAGGGGCGG 62.343 65.000 7.34 0.00 36.05 6.13
4416 5975 4.066139 ACCGGTAGTAGGGGCGGT 62.066 66.667 4.49 0.00 0.00 5.68
4417 5976 2.761213 CCGGTAGTAGGGGCGGTT 60.761 66.667 0.00 0.00 0.00 4.44
4418 5977 2.361567 CCGGTAGTAGGGGCGGTTT 61.362 63.158 0.00 0.00 0.00 3.27
4419 5978 1.142531 CGGTAGTAGGGGCGGTTTC 59.857 63.158 0.00 0.00 0.00 2.78
4420 5979 1.142531 GGTAGTAGGGGCGGTTTCG 59.857 63.158 0.00 0.00 39.81 3.46
4421 5980 1.142531 GTAGTAGGGGCGGTTTCGG 59.857 63.158 0.00 0.00 36.79 4.30
4422 5981 2.059786 TAGTAGGGGCGGTTTCGGG 61.060 63.158 0.00 0.00 36.79 5.14
4423 5982 4.478371 GTAGGGGCGGTTTCGGGG 62.478 72.222 0.00 0.00 36.79 5.73
4424 5983 4.718827 TAGGGGCGGTTTCGGGGA 62.719 66.667 0.00 0.00 36.79 4.81
4499 6058 3.515286 CGGGCGACGGCTAGAGAA 61.515 66.667 21.48 0.00 39.81 2.87
4500 6059 2.413765 GGGCGACGGCTAGAGAAG 59.586 66.667 21.48 0.00 39.81 2.85
4501 6060 2.119655 GGGCGACGGCTAGAGAAGA 61.120 63.158 21.48 0.00 39.81 2.87
4502 6061 1.664321 GGGCGACGGCTAGAGAAGAA 61.664 60.000 21.48 0.00 39.81 2.52
4503 6062 0.248702 GGCGACGGCTAGAGAAGAAG 60.249 60.000 15.00 0.00 39.81 2.85
4504 6063 0.733729 GCGACGGCTAGAGAAGAAGA 59.266 55.000 0.00 0.00 35.83 2.87
4505 6064 1.132643 GCGACGGCTAGAGAAGAAGAA 59.867 52.381 0.00 0.00 35.83 2.52
4506 6065 2.793237 GCGACGGCTAGAGAAGAAGAAG 60.793 54.545 0.00 0.00 35.83 2.85
4507 6066 2.678836 CGACGGCTAGAGAAGAAGAAGA 59.321 50.000 0.00 0.00 0.00 2.87
4508 6067 3.314080 CGACGGCTAGAGAAGAAGAAGAT 59.686 47.826 0.00 0.00 0.00 2.40
4509 6068 4.512198 CGACGGCTAGAGAAGAAGAAGATA 59.488 45.833 0.00 0.00 0.00 1.98
4510 6069 5.180492 CGACGGCTAGAGAAGAAGAAGATAT 59.820 44.000 0.00 0.00 0.00 1.63
4511 6070 6.325919 ACGGCTAGAGAAGAAGAAGATATG 57.674 41.667 0.00 0.00 0.00 1.78
4512 6071 5.242838 ACGGCTAGAGAAGAAGAAGATATGG 59.757 44.000 0.00 0.00 0.00 2.74
4513 6072 5.475220 CGGCTAGAGAAGAAGAAGATATGGA 59.525 44.000 0.00 0.00 0.00 3.41
4514 6073 6.349280 CGGCTAGAGAAGAAGAAGATATGGAG 60.349 46.154 0.00 0.00 0.00 3.86
4515 6074 6.071391 GGCTAGAGAAGAAGAAGATATGGAGG 60.071 46.154 0.00 0.00 0.00 4.30
4516 6075 6.493458 GCTAGAGAAGAAGAAGATATGGAGGT 59.507 42.308 0.00 0.00 0.00 3.85
4517 6076 7.668052 GCTAGAGAAGAAGAAGATATGGAGGTA 59.332 40.741 0.00 0.00 0.00 3.08
4518 6077 9.231297 CTAGAGAAGAAGAAGATATGGAGGTAG 57.769 40.741 0.00 0.00 0.00 3.18
4519 6078 7.821566 AGAGAAGAAGAAGATATGGAGGTAGA 58.178 38.462 0.00 0.00 0.00 2.59
4520 6079 8.285891 AGAGAAGAAGAAGATATGGAGGTAGAA 58.714 37.037 0.00 0.00 0.00 2.10
4521 6080 8.477419 AGAAGAAGAAGATATGGAGGTAGAAG 57.523 38.462 0.00 0.00 0.00 2.85
4522 6081 8.285891 AGAAGAAGAAGATATGGAGGTAGAAGA 58.714 37.037 0.00 0.00 0.00 2.87
4523 6082 8.846423 AAGAAGAAGATATGGAGGTAGAAGAA 57.154 34.615 0.00 0.00 0.00 2.52
4524 6083 8.846423 AGAAGAAGATATGGAGGTAGAAGAAA 57.154 34.615 0.00 0.00 0.00 2.52
4525 6084 8.923270 AGAAGAAGATATGGAGGTAGAAGAAAG 58.077 37.037 0.00 0.00 0.00 2.62
4526 6085 7.610580 AGAAGATATGGAGGTAGAAGAAAGG 57.389 40.000 0.00 0.00 0.00 3.11
4527 6086 5.816955 AGATATGGAGGTAGAAGAAAGGC 57.183 43.478 0.00 0.00 0.00 4.35
4528 6087 4.595350 AGATATGGAGGTAGAAGAAAGGCC 59.405 45.833 0.00 0.00 0.00 5.19
4529 6088 0.902531 TGGAGGTAGAAGAAAGGCCG 59.097 55.000 0.00 0.00 0.00 6.13
4530 6089 0.178301 GGAGGTAGAAGAAAGGCCGG 59.822 60.000 0.00 0.00 0.00 6.13
4531 6090 0.178301 GAGGTAGAAGAAAGGCCGGG 59.822 60.000 2.18 0.00 0.00 5.73
4532 6091 1.451567 GGTAGAAGAAAGGCCGGGC 60.452 63.158 22.67 22.67 0.00 6.13
4533 6092 1.814169 GTAGAAGAAAGGCCGGGCG 60.814 63.158 23.81 0.00 0.00 6.13
4534 6093 3.675619 TAGAAGAAAGGCCGGGCGC 62.676 63.158 23.81 15.99 0.00 6.53
4545 6104 4.174129 CGGGCGCCGTTGGATTTC 62.174 66.667 22.54 1.28 42.73 2.17
4546 6105 4.174129 GGGCGCCGTTGGATTTCG 62.174 66.667 22.54 0.00 0.00 3.46
4547 6106 3.122323 GGCGCCGTTGGATTTCGA 61.122 61.111 12.58 0.00 0.00 3.71
4548 6107 2.469516 GGCGCCGTTGGATTTCGAT 61.470 57.895 12.58 0.00 0.00 3.59
4549 6108 1.011131 GCGCCGTTGGATTTCGATC 60.011 57.895 0.00 0.00 0.00 3.69
4550 6109 1.272715 CGCCGTTGGATTTCGATCG 59.727 57.895 9.36 9.36 0.00 3.69
4551 6110 1.418342 CGCCGTTGGATTTCGATCGT 61.418 55.000 15.94 0.00 0.00 3.73
4552 6111 1.563111 GCCGTTGGATTTCGATCGTA 58.437 50.000 15.94 1.77 0.00 3.43
4553 6112 1.257155 GCCGTTGGATTTCGATCGTAC 59.743 52.381 15.94 0.00 0.00 3.67
4554 6113 1.515631 CCGTTGGATTTCGATCGTACG 59.484 52.381 15.94 9.53 0.00 3.67
4555 6114 2.179589 CGTTGGATTTCGATCGTACGT 58.820 47.619 15.94 2.33 34.70 3.57
4556 6115 2.595536 CGTTGGATTTCGATCGTACGTT 59.404 45.455 15.94 6.89 34.70 3.99
4557 6116 3.300754 CGTTGGATTTCGATCGTACGTTC 60.301 47.826 15.94 15.40 34.70 3.95
4558 6117 2.443387 TGGATTTCGATCGTACGTTCG 58.557 47.619 32.31 32.31 38.31 3.95
4559 6118 2.095692 TGGATTTCGATCGTACGTTCGA 59.904 45.455 34.98 34.98 42.30 3.71
4565 6124 4.726975 TCGATCGTACGTTCGAAAAATC 57.273 40.909 35.93 19.70 41.46 2.17
4566 6125 3.235852 TCGATCGTACGTTCGAAAAATCG 59.764 43.478 35.93 27.68 41.46 3.34
4567 6126 3.235852 CGATCGTACGTTCGAAAAATCGA 59.764 43.478 33.82 13.87 42.99 3.59
4568 6127 3.933740 TCGTACGTTCGAAAAATCGAC 57.066 42.857 15.14 5.90 42.20 4.20
4569 6128 3.554524 TCGTACGTTCGAAAAATCGACT 58.445 40.909 15.14 0.00 42.20 4.18
4570 6129 3.358700 TCGTACGTTCGAAAAATCGACTG 59.641 43.478 15.14 0.00 42.20 3.51
4571 6130 3.358700 CGTACGTTCGAAAAATCGACTGA 59.641 43.478 9.11 0.00 42.20 3.41
4572 6131 3.765505 ACGTTCGAAAAATCGACTGAC 57.234 42.857 12.17 0.00 42.20 3.51
4573 6132 2.473984 ACGTTCGAAAAATCGACTGACC 59.526 45.455 12.17 0.00 42.20 4.02
4574 6133 2.159881 CGTTCGAAAAATCGACTGACCC 60.160 50.000 0.00 0.00 42.20 4.46
4575 6134 1.705256 TCGAAAAATCGACTGACCCG 58.295 50.000 0.00 0.00 37.20 5.28
4576 6135 1.270274 TCGAAAAATCGACTGACCCGA 59.730 47.619 0.00 0.00 40.53 5.14
4583 6142 2.823924 TCGACTGACCCGATTTGAAA 57.176 45.000 0.00 0.00 0.00 2.69
4584 6143 3.114668 TCGACTGACCCGATTTGAAAA 57.885 42.857 0.00 0.00 0.00 2.29
4585 6144 3.468770 TCGACTGACCCGATTTGAAAAA 58.531 40.909 0.00 0.00 0.00 1.94
4586 6145 3.496884 TCGACTGACCCGATTTGAAAAAG 59.503 43.478 0.00 0.00 0.00 2.27
4587 6146 3.250040 CGACTGACCCGATTTGAAAAAGT 59.750 43.478 0.00 0.00 0.00 2.66
4588 6147 4.610680 CGACTGACCCGATTTGAAAAAGTC 60.611 45.833 0.00 0.00 0.00 3.01
4589 6148 4.204012 ACTGACCCGATTTGAAAAAGTCA 58.796 39.130 0.00 0.00 0.00 3.41
4590 6149 4.787598 CTGACCCGATTTGAAAAAGTCAG 58.212 43.478 12.35 12.35 42.46 3.51
4591 6150 4.204012 TGACCCGATTTGAAAAAGTCAGT 58.796 39.130 0.00 0.00 37.61 3.41
4592 6151 4.642885 TGACCCGATTTGAAAAAGTCAGTT 59.357 37.500 0.00 0.00 37.61 3.16
4593 6152 5.823570 TGACCCGATTTGAAAAAGTCAGTTA 59.176 36.000 0.00 0.00 37.61 2.24
4594 6153 6.319152 TGACCCGATTTGAAAAAGTCAGTTAA 59.681 34.615 0.00 0.00 37.61 2.01
4595 6154 6.500910 ACCCGATTTGAAAAAGTCAGTTAAC 58.499 36.000 0.00 0.00 37.61 2.01
4596 6155 6.320418 ACCCGATTTGAAAAAGTCAGTTAACT 59.680 34.615 1.12 1.12 37.61 2.24
4597 6156 6.636850 CCCGATTTGAAAAAGTCAGTTAACTG 59.363 38.462 26.60 26.60 45.08 3.16
4608 6167 3.299340 CAGTTAACTGACGTGTAGCCT 57.701 47.619 28.17 0.00 46.59 4.58
4609 6168 3.243336 CAGTTAACTGACGTGTAGCCTC 58.757 50.000 28.17 0.00 46.59 4.70
4610 6169 2.889045 AGTTAACTGACGTGTAGCCTCA 59.111 45.455 7.48 0.00 0.00 3.86
4611 6170 3.510360 AGTTAACTGACGTGTAGCCTCAT 59.490 43.478 7.48 0.00 0.00 2.90
4612 6171 2.656560 AACTGACGTGTAGCCTCATC 57.343 50.000 0.00 0.00 0.00 2.92
4613 6172 0.818296 ACTGACGTGTAGCCTCATCC 59.182 55.000 0.00 0.00 0.00 3.51
4614 6173 1.107114 CTGACGTGTAGCCTCATCCT 58.893 55.000 0.00 0.00 0.00 3.24
4615 6174 0.817654 TGACGTGTAGCCTCATCCTG 59.182 55.000 0.00 0.00 0.00 3.86
4616 6175 0.528684 GACGTGTAGCCTCATCCTGC 60.529 60.000 0.00 0.00 0.00 4.85
4617 6176 1.257750 ACGTGTAGCCTCATCCTGCA 61.258 55.000 0.00 0.00 0.00 4.41
4618 6177 0.108186 CGTGTAGCCTCATCCTGCAA 60.108 55.000 0.00 0.00 0.00 4.08
4619 6178 1.675714 CGTGTAGCCTCATCCTGCAAA 60.676 52.381 0.00 0.00 0.00 3.68
4620 6179 2.648059 GTGTAGCCTCATCCTGCAAAT 58.352 47.619 0.00 0.00 0.00 2.32
4621 6180 3.741075 CGTGTAGCCTCATCCTGCAAATA 60.741 47.826 0.00 0.00 0.00 1.40
4622 6181 3.812053 GTGTAGCCTCATCCTGCAAATAG 59.188 47.826 0.00 0.00 0.00 1.73
4659 6218 1.423395 CACGCCTTCACTTGAGAGAC 58.577 55.000 0.00 0.00 0.00 3.36
4679 6238 0.329261 CCAGGTTTGATCCCAGCTCA 59.671 55.000 0.00 0.00 0.00 4.26
4802 6372 9.231297 TGAAAATTCCTTAGAGAAATGTGTAGG 57.769 33.333 0.00 0.00 0.00 3.18
4829 6399 7.671495 TCAAATATGCTATTATCGTGCATGT 57.329 32.000 5.68 0.73 45.52 3.21
5014 6584 9.301153 GGTTTACAATGCAACCTTAATTCATAG 57.699 33.333 7.49 0.00 39.62 2.23
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 8.440771 CCTAGGTCCCAAGAGTTCAAATATATT 58.559 37.037 0.00 0.00 0.00 1.28
44 45 3.518303 TCTTGTTCTAAAGGCCTAGGTCC 59.482 47.826 10.56 11.93 0.00 4.46
45 46 4.820894 TCTTGTTCTAAAGGCCTAGGTC 57.179 45.455 5.16 4.79 0.00 3.85
49 50 7.200434 AGATTGATCTTGTTCTAAAGGCCTA 57.800 36.000 5.16 0.00 31.97 3.93
224 291 9.354673 TCTCAAAACTAGATTCCACTCATTTTT 57.645 29.630 0.00 0.00 0.00 1.94
228 295 7.009179 TGTCTCAAAACTAGATTCCACTCAT 57.991 36.000 0.00 0.00 0.00 2.90
352 423 7.740346 GTCATGTGTACGAACAAAAGATTACAG 59.260 37.037 0.00 0.00 37.36 2.74
368 439 5.027737 CACCAAAATATGCGTCATGTGTAC 58.972 41.667 0.00 0.00 0.00 2.90
373 444 4.354071 TCACACCAAAATATGCGTCATG 57.646 40.909 3.07 0.00 0.00 3.07
379 450 9.585099 TTTCAGATATTTCACACCAAAATATGC 57.415 29.630 5.97 0.00 38.68 3.14
460 540 9.101655 CTCATTTTCAAAAAGTTGATTCCACTT 57.898 29.630 0.00 0.00 43.29 3.16
551 632 8.822855 CACTAAAATAAGGGGTTTCACAAAAAC 58.177 33.333 0.00 0.00 0.00 2.43
572 653 7.328277 AGCAACTTCACAATAAACACACTAA 57.672 32.000 0.00 0.00 0.00 2.24
573 654 6.935741 AGCAACTTCACAATAAACACACTA 57.064 33.333 0.00 0.00 0.00 2.74
575 656 5.171337 CGAAGCAACTTCACAATAAACACAC 59.829 40.000 7.99 0.00 40.17 3.82
576 657 5.163703 ACGAAGCAACTTCACAATAAACACA 60.164 36.000 7.99 0.00 40.17 3.72
577 658 5.270853 ACGAAGCAACTTCACAATAAACAC 58.729 37.500 7.99 0.00 40.17 3.32
578 659 5.493133 ACGAAGCAACTTCACAATAAACA 57.507 34.783 7.99 0.00 40.17 2.83
579 660 6.806120 AAACGAAGCAACTTCACAATAAAC 57.194 33.333 7.99 0.00 40.17 2.01
581 662 7.011576 TGAGTAAACGAAGCAACTTCACAATAA 59.988 33.333 7.99 0.00 40.17 1.40
582 663 6.480651 TGAGTAAACGAAGCAACTTCACAATA 59.519 34.615 7.99 0.00 40.17 1.90
829 913 2.166821 TGCTTTACCTAACGGCGAAA 57.833 45.000 16.62 0.76 0.00 3.46
950 1045 1.803555 GAACTTGGAAGAGACAGCTGC 59.196 52.381 15.27 6.85 0.00 5.25
1076 1181 0.671781 GATCCGGCGATTGGGATGAG 60.672 60.000 9.30 0.00 43.00 2.90
1079 1184 2.750350 GGATCCGGCGATTGGGAT 59.250 61.111 9.30 0.93 45.57 3.85
1107 1212 2.760385 CGAGGGGTCCTGGTCCTC 60.760 72.222 17.29 17.29 42.60 3.71
1245 1350 2.350895 CCACAGGTTCATCCGCCA 59.649 61.111 0.00 0.00 41.99 5.69
1265 1370 4.202430 ACCAAATTATACTCCCCCATCGAC 60.202 45.833 0.00 0.00 0.00 4.20
1298 1403 6.238049 CGAAATATTCAGAGTGCCTTCAGAAG 60.238 42.308 2.78 2.78 0.00 2.85
1499 1604 8.924691 CAAGAAAGACAGAAACAAAATCAACAA 58.075 29.630 0.00 0.00 0.00 2.83
1854 1959 6.571154 GCGCAATCAAATTTGAGAAAAGAAAC 59.429 34.615 24.17 5.95 41.08 2.78
2364 2471 7.863901 AGGACTAAGATATACTGGATTGCTT 57.136 36.000 0.00 0.00 0.00 3.91
2914 3030 7.686434 ACCAGCAGTTTTAATTCTAGGTCTTA 58.314 34.615 0.00 0.00 0.00 2.10
3666 5210 1.064463 GGATTTCATCACCTCCTGGCA 60.064 52.381 0.00 0.00 36.63 4.92
3841 5385 6.774673 TGACACATCATAAGTAACCCTTCAA 58.225 36.000 0.00 0.00 34.46 2.69
3944 5502 5.773176 TCTGTGTGATGTACTGTCTTCCTAA 59.227 40.000 0.00 0.00 0.00 2.69
4171 5730 9.793252 ATTGACATTTAGCTAAAGTGCTATTTG 57.207 29.630 22.55 15.47 43.92 2.32
4192 5751 6.192360 CCTATTTCAAAATCGGTCGATTGAC 58.808 40.000 17.64 4.31 43.26 3.18
4193 5752 5.295787 CCCTATTTCAAAATCGGTCGATTGA 59.704 40.000 17.64 11.29 43.26 2.57
4194 5753 5.065988 ACCCTATTTCAAAATCGGTCGATTG 59.934 40.000 17.64 9.32 43.26 2.67
4195 5754 5.190677 ACCCTATTTCAAAATCGGTCGATT 58.809 37.500 12.18 12.18 45.67 3.34
4196 5755 4.777463 ACCCTATTTCAAAATCGGTCGAT 58.223 39.130 0.00 0.00 36.23 3.59
4197 5756 4.186159 GACCCTATTTCAAAATCGGTCGA 58.814 43.478 14.21 0.00 37.79 4.20
4198 5757 3.936453 TGACCCTATTTCAAAATCGGTCG 59.064 43.478 19.54 5.87 43.77 4.79
4199 5758 4.941873 ACTGACCCTATTTCAAAATCGGTC 59.058 41.667 18.78 18.78 42.54 4.79
4200 5759 4.918588 ACTGACCCTATTTCAAAATCGGT 58.081 39.130 6.79 6.79 35.21 4.69
4201 5760 4.034048 CGACTGACCCTATTTCAAAATCGG 59.966 45.833 0.24 0.24 32.60 4.18
4202 5761 4.034048 CCGACTGACCCTATTTCAAAATCG 59.966 45.833 0.00 0.00 0.00 3.34
4203 5762 4.941873 ACCGACTGACCCTATTTCAAAATC 59.058 41.667 0.00 0.00 0.00 2.17
4204 5763 4.918588 ACCGACTGACCCTATTTCAAAAT 58.081 39.130 0.00 0.00 0.00 1.82
4205 5764 4.360951 ACCGACTGACCCTATTTCAAAA 57.639 40.909 0.00 0.00 0.00 2.44
4206 5765 4.360951 AACCGACTGACCCTATTTCAAA 57.639 40.909 0.00 0.00 0.00 2.69
4207 5766 4.360951 AAACCGACTGACCCTATTTCAA 57.639 40.909 0.00 0.00 0.00 2.69
4208 5767 4.320870 GAAAACCGACTGACCCTATTTCA 58.679 43.478 0.00 0.00 0.00 2.69
4209 5768 3.370061 CGAAAACCGACTGACCCTATTTC 59.630 47.826 0.00 0.00 41.76 2.17
4210 5769 3.007182 TCGAAAACCGACTGACCCTATTT 59.993 43.478 0.00 0.00 43.23 1.40
4211 5770 2.564062 TCGAAAACCGACTGACCCTATT 59.436 45.455 0.00 0.00 43.23 1.73
4212 5771 2.165845 CTCGAAAACCGACTGACCCTAT 59.834 50.000 0.00 0.00 43.23 2.57
4213 5772 1.542915 CTCGAAAACCGACTGACCCTA 59.457 52.381 0.00 0.00 43.23 3.53
4214 5773 0.317479 CTCGAAAACCGACTGACCCT 59.683 55.000 0.00 0.00 43.23 4.34
4215 5774 0.316204 TCTCGAAAACCGACTGACCC 59.684 55.000 0.00 0.00 43.23 4.46
4216 5775 1.268899 TCTCTCGAAAACCGACTGACC 59.731 52.381 0.00 0.00 43.23 4.02
4217 5776 2.701073 TCTCTCGAAAACCGACTGAC 57.299 50.000 0.00 0.00 43.23 3.51
4218 5777 2.671351 GCATCTCTCGAAAACCGACTGA 60.671 50.000 0.00 0.00 43.23 3.41
4219 5778 1.656095 GCATCTCTCGAAAACCGACTG 59.344 52.381 0.00 0.00 43.23 3.51
4220 5779 1.404315 GGCATCTCTCGAAAACCGACT 60.404 52.381 0.00 0.00 43.23 4.18
4221 5780 1.000145 GGCATCTCTCGAAAACCGAC 59.000 55.000 0.00 0.00 43.23 4.79
4222 5781 0.108329 GGGCATCTCTCGAAAACCGA 60.108 55.000 0.00 0.00 46.35 4.69
4223 5782 1.421410 CGGGCATCTCTCGAAAACCG 61.421 60.000 0.00 0.00 40.25 4.44
4224 5783 0.391263 ACGGGCATCTCTCGAAAACC 60.391 55.000 0.00 0.00 0.00 3.27
4225 5784 2.194271 CTACGGGCATCTCTCGAAAAC 58.806 52.381 0.00 0.00 0.00 2.43
4226 5785 1.822990 ACTACGGGCATCTCTCGAAAA 59.177 47.619 0.00 0.00 0.00 2.29
4227 5786 1.134367 CACTACGGGCATCTCTCGAAA 59.866 52.381 0.00 0.00 0.00 3.46
4228 5787 0.738975 CACTACGGGCATCTCTCGAA 59.261 55.000 0.00 0.00 0.00 3.71
4229 5788 0.107361 TCACTACGGGCATCTCTCGA 60.107 55.000 0.00 0.00 0.00 4.04
4230 5789 0.309302 CTCACTACGGGCATCTCTCG 59.691 60.000 0.00 0.00 0.00 4.04
4231 5790 0.031449 GCTCACTACGGGCATCTCTC 59.969 60.000 0.00 0.00 0.00 3.20
4232 5791 1.395826 GGCTCACTACGGGCATCTCT 61.396 60.000 0.00 0.00 0.00 3.10
4233 5792 1.068250 GGCTCACTACGGGCATCTC 59.932 63.158 0.00 0.00 0.00 2.75
4234 5793 2.786495 CGGCTCACTACGGGCATCT 61.786 63.158 0.00 0.00 0.00 2.90
4235 5794 2.279517 CGGCTCACTACGGGCATC 60.280 66.667 0.00 0.00 0.00 3.91
4236 5795 3.849951 CCGGCTCACTACGGGCAT 61.850 66.667 0.00 0.00 46.08 4.40
4241 5800 0.813184 TTTACCTCCGGCTCACTACG 59.187 55.000 0.00 0.00 0.00 3.51
4242 5801 2.097825 TCTTTACCTCCGGCTCACTAC 58.902 52.381 0.00 0.00 0.00 2.73
4243 5802 2.519771 TCTTTACCTCCGGCTCACTA 57.480 50.000 0.00 0.00 0.00 2.74
4244 5803 1.550976 CTTCTTTACCTCCGGCTCACT 59.449 52.381 0.00 0.00 0.00 3.41
4245 5804 1.405661 CCTTCTTTACCTCCGGCTCAC 60.406 57.143 0.00 0.00 0.00 3.51
4246 5805 0.902531 CCTTCTTTACCTCCGGCTCA 59.097 55.000 0.00 0.00 0.00 4.26
4247 5806 1.137282 CTCCTTCTTTACCTCCGGCTC 59.863 57.143 0.00 0.00 0.00 4.70
4248 5807 1.196012 CTCCTTCTTTACCTCCGGCT 58.804 55.000 0.00 0.00 0.00 5.52
4249 5808 1.192428 TCTCCTTCTTTACCTCCGGC 58.808 55.000 0.00 0.00 0.00 6.13
4250 5809 2.168728 CCTTCTCCTTCTTTACCTCCGG 59.831 54.545 0.00 0.00 0.00 5.14
4251 5810 3.097614 TCCTTCTCCTTCTTTACCTCCG 58.902 50.000 0.00 0.00 0.00 4.63
4252 5811 4.080807 CCTTCCTTCTCCTTCTTTACCTCC 60.081 50.000 0.00 0.00 0.00 4.30
4253 5812 4.080807 CCCTTCCTTCTCCTTCTTTACCTC 60.081 50.000 0.00 0.00 0.00 3.85
4254 5813 3.847184 CCCTTCCTTCTCCTTCTTTACCT 59.153 47.826 0.00 0.00 0.00 3.08
4255 5814 3.054287 CCCCTTCCTTCTCCTTCTTTACC 60.054 52.174 0.00 0.00 0.00 2.85
4256 5815 3.622704 GCCCCTTCCTTCTCCTTCTTTAC 60.623 52.174 0.00 0.00 0.00 2.01
4257 5816 2.576648 GCCCCTTCCTTCTCCTTCTTTA 59.423 50.000 0.00 0.00 0.00 1.85
4258 5817 1.356059 GCCCCTTCCTTCTCCTTCTTT 59.644 52.381 0.00 0.00 0.00 2.52
4259 5818 0.995803 GCCCCTTCCTTCTCCTTCTT 59.004 55.000 0.00 0.00 0.00 2.52
4260 5819 0.120172 AGCCCCTTCCTTCTCCTTCT 59.880 55.000 0.00 0.00 0.00 2.85
4261 5820 0.544223 GAGCCCCTTCCTTCTCCTTC 59.456 60.000 0.00 0.00 0.00 3.46
4262 5821 1.268283 CGAGCCCCTTCCTTCTCCTT 61.268 60.000 0.00 0.00 0.00 3.36
4263 5822 1.687493 CGAGCCCCTTCCTTCTCCT 60.687 63.158 0.00 0.00 0.00 3.69
4264 5823 2.904131 CGAGCCCCTTCCTTCTCC 59.096 66.667 0.00 0.00 0.00 3.71
4265 5824 2.188207 GCGAGCCCCTTCCTTCTC 59.812 66.667 0.00 0.00 0.00 2.87
4266 5825 3.403558 GGCGAGCCCCTTCCTTCT 61.404 66.667 1.97 0.00 0.00 2.85
4267 5826 4.840005 CGGCGAGCCCCTTCCTTC 62.840 72.222 0.00 0.00 0.00 3.46
4276 5835 3.902086 GTAGTCCTCCGGCGAGCC 61.902 72.222 9.30 3.59 34.49 4.70
4277 5836 3.902086 GGTAGTCCTCCGGCGAGC 61.902 72.222 9.30 0.00 34.49 5.03
4278 5837 3.217743 GGGTAGTCCTCCGGCGAG 61.218 72.222 9.30 3.68 35.72 5.03
4279 5838 4.828296 GGGGTAGTCCTCCGGCGA 62.828 72.222 9.30 0.00 35.33 5.54
4281 5840 2.578586 TACTGGGGTAGTCCTCCGGC 62.579 65.000 0.00 0.00 40.89 6.13
4282 5841 0.187851 ATACTGGGGTAGTCCTCCGG 59.812 60.000 0.00 0.00 40.89 5.14
4283 5842 1.145325 AGATACTGGGGTAGTCCTCCG 59.855 57.143 0.00 0.00 40.89 4.63
4284 5843 4.292836 AGATAGATACTGGGGTAGTCCTCC 59.707 50.000 0.00 0.00 40.89 4.30
4285 5844 5.523883 AGATAGATACTGGGGTAGTCCTC 57.476 47.826 0.00 0.00 40.89 3.71
4286 5845 5.952161 AAGATAGATACTGGGGTAGTCCT 57.048 43.478 0.00 0.00 40.89 3.85
4287 5846 6.189133 CCTAAGATAGATACTGGGGTAGTCC 58.811 48.000 0.00 0.00 40.89 3.85
4288 5847 6.189133 CCCTAAGATAGATACTGGGGTAGTC 58.811 48.000 0.00 0.00 40.89 2.59
4289 5848 5.620457 ACCCTAAGATAGATACTGGGGTAGT 59.380 44.000 0.00 0.00 40.16 2.73
4290 5849 6.155247 ACCCTAAGATAGATACTGGGGTAG 57.845 45.833 0.00 0.00 40.16 3.18
4291 5850 6.556644 AACCCTAAGATAGATACTGGGGTA 57.443 41.667 0.00 0.00 40.64 3.69
4292 5851 5.435545 AACCCTAAGATAGATACTGGGGT 57.564 43.478 0.00 0.00 42.04 4.95
4293 5852 6.440965 CCTAAACCCTAAGATAGATACTGGGG 59.559 46.154 0.00 0.00 37.56 4.96
4294 5853 6.440965 CCCTAAACCCTAAGATAGATACTGGG 59.559 46.154 0.00 0.00 39.06 4.45
4295 5854 7.017531 ACCCTAAACCCTAAGATAGATACTGG 58.982 42.308 0.00 0.00 0.00 4.00
4296 5855 7.038941 CCACCCTAAACCCTAAGATAGATACTG 60.039 44.444 0.00 0.00 0.00 2.74
4297 5856 7.017531 CCACCCTAAACCCTAAGATAGATACT 58.982 42.308 0.00 0.00 0.00 2.12
4298 5857 6.212993 CCCACCCTAAACCCTAAGATAGATAC 59.787 46.154 0.00 0.00 0.00 2.24
4299 5858 6.328592 CCCACCCTAAACCCTAAGATAGATA 58.671 44.000 0.00 0.00 0.00 1.98
4300 5859 5.163390 CCCACCCTAAACCCTAAGATAGAT 58.837 45.833 0.00 0.00 0.00 1.98
4301 5860 4.563782 CCCACCCTAAACCCTAAGATAGA 58.436 47.826 0.00 0.00 0.00 1.98
4302 5861 3.651423 CCCCACCCTAAACCCTAAGATAG 59.349 52.174 0.00 0.00 0.00 2.08
4303 5862 3.636855 CCCCCACCCTAAACCCTAAGATA 60.637 52.174 0.00 0.00 0.00 1.98
4304 5863 2.499515 CCCCACCCTAAACCCTAAGAT 58.500 52.381 0.00 0.00 0.00 2.40
4305 5864 1.558622 CCCCCACCCTAAACCCTAAGA 60.559 57.143 0.00 0.00 0.00 2.10
4306 5865 0.924090 CCCCCACCCTAAACCCTAAG 59.076 60.000 0.00 0.00 0.00 2.18
4307 5866 0.199216 ACCCCCACCCTAAACCCTAA 59.801 55.000 0.00 0.00 0.00 2.69
4308 5867 0.550638 CACCCCCACCCTAAACCCTA 60.551 60.000 0.00 0.00 0.00 3.53
4309 5868 1.855451 CACCCCCACCCTAAACCCT 60.855 63.158 0.00 0.00 0.00 4.34
4310 5869 2.768045 CACCCCCACCCTAAACCC 59.232 66.667 0.00 0.00 0.00 4.11
4311 5870 2.164967 ACCACCCCCACCCTAAACC 61.165 63.158 0.00 0.00 0.00 3.27
4312 5871 1.076014 CACCACCCCCACCCTAAAC 59.924 63.158 0.00 0.00 0.00 2.01
4313 5872 2.164279 CCACCACCCCCACCCTAAA 61.164 63.158 0.00 0.00 0.00 1.85
4314 5873 2.533232 CCACCACCCCCACCCTAA 60.533 66.667 0.00 0.00 0.00 2.69
4315 5874 3.877553 ACCACCACCCCCACCCTA 61.878 66.667 0.00 0.00 0.00 3.53
4319 5878 3.826265 AATGCACCACCACCCCCAC 62.826 63.158 0.00 0.00 0.00 4.61
4320 5879 3.093415 AAATGCACCACCACCCCCA 62.093 57.895 0.00 0.00 0.00 4.96
4321 5880 2.203773 AAATGCACCACCACCCCC 60.204 61.111 0.00 0.00 0.00 5.40
4322 5881 2.282783 GGAAATGCACCACCACCCC 61.283 63.158 0.00 0.00 0.00 4.95
4323 5882 2.282783 GGGAAATGCACCACCACCC 61.283 63.158 0.00 0.00 0.00 4.61
4324 5883 2.282783 GGGGAAATGCACCACCACC 61.283 63.158 0.00 0.00 41.00 4.61
4325 5884 2.635443 CGGGGAAATGCACCACCAC 61.635 63.158 0.00 0.00 41.62 4.16
4326 5885 2.282816 CGGGGAAATGCACCACCA 60.283 61.111 0.00 0.00 41.62 4.17
4327 5886 3.068064 CCGGGGAAATGCACCACC 61.068 66.667 0.00 0.00 41.62 4.61
4328 5887 2.034999 TCCGGGGAAATGCACCAC 59.965 61.111 0.00 0.00 41.62 4.16
4329 5888 1.784301 TTCTCCGGGGAAATGCACCA 61.784 55.000 16.30 0.00 41.62 4.17
4330 5889 0.610785 TTTCTCCGGGGAAATGCACC 60.611 55.000 25.83 0.00 36.39 5.01
4331 5890 1.253100 TTTTCTCCGGGGAAATGCAC 58.747 50.000 29.58 0.00 35.51 4.57
4332 5891 2.002505 TTTTTCTCCGGGGAAATGCA 57.997 45.000 29.58 13.00 35.51 3.96
4348 5907 1.626321 CCCGCCCCCATTTAAGTTTTT 59.374 47.619 0.00 0.00 0.00 1.94
4349 5908 1.271856 CCCGCCCCCATTTAAGTTTT 58.728 50.000 0.00 0.00 0.00 2.43
4350 5909 1.261938 GCCCGCCCCCATTTAAGTTT 61.262 55.000 0.00 0.00 0.00 2.66
4351 5910 1.684391 GCCCGCCCCCATTTAAGTT 60.684 57.895 0.00 0.00 0.00 2.66
4352 5911 2.043349 GCCCGCCCCCATTTAAGT 60.043 61.111 0.00 0.00 0.00 2.24
4353 5912 2.002018 TAGGCCCGCCCCCATTTAAG 62.002 60.000 0.00 0.00 36.58 1.85
4354 5913 2.002018 CTAGGCCCGCCCCCATTTAA 62.002 60.000 0.00 0.00 36.58 1.52
4355 5914 2.368466 TAGGCCCGCCCCCATTTA 60.368 61.111 0.00 0.00 36.58 1.40
4356 5915 3.820843 CTAGGCCCGCCCCCATTT 61.821 66.667 0.00 0.00 36.58 2.32
4357 5916 4.835456 TCTAGGCCCGCCCCCATT 62.835 66.667 0.00 0.00 36.58 3.16
4362 5921 4.964241 ATCCCTCTAGGCCCGCCC 62.964 72.222 0.00 0.00 36.58 6.13
4363 5922 3.631046 CATCCCTCTAGGCCCGCC 61.631 72.222 0.00 0.00 34.51 6.13
4364 5923 2.844839 ACATCCCTCTAGGCCCGC 60.845 66.667 0.00 0.00 34.51 6.13
4365 5924 1.152440 AGACATCCCTCTAGGCCCG 60.152 63.158 0.00 0.00 34.51 6.13
4366 5925 1.124477 CCAGACATCCCTCTAGGCCC 61.124 65.000 0.00 0.00 34.51 5.80
4367 5926 1.124477 CCCAGACATCCCTCTAGGCC 61.124 65.000 0.00 0.00 34.51 5.19
4368 5927 1.124477 CCCCAGACATCCCTCTAGGC 61.124 65.000 0.00 0.00 34.51 3.93
4369 5928 0.472734 CCCCCAGACATCCCTCTAGG 60.473 65.000 0.00 0.00 0.00 3.02
4370 5929 1.124477 GCCCCCAGACATCCCTCTAG 61.124 65.000 0.00 0.00 0.00 2.43
4371 5930 1.074471 GCCCCCAGACATCCCTCTA 60.074 63.158 0.00 0.00 0.00 2.43
4372 5931 2.367512 GCCCCCAGACATCCCTCT 60.368 66.667 0.00 0.00 0.00 3.69
4373 5932 3.866582 CGCCCCCAGACATCCCTC 61.867 72.222 0.00 0.00 0.00 4.30
4393 5952 0.539207 CCCCTACTACCGGTCTAGCC 60.539 65.000 12.40 0.00 0.00 3.93
4394 5953 1.177895 GCCCCTACTACCGGTCTAGC 61.178 65.000 12.40 1.65 0.00 3.42
4395 5954 0.888285 CGCCCCTACTACCGGTCTAG 60.888 65.000 12.40 11.43 0.00 2.43
4396 5955 1.149174 CGCCCCTACTACCGGTCTA 59.851 63.158 12.40 0.12 0.00 2.59
4397 5956 2.123982 CGCCCCTACTACCGGTCT 60.124 66.667 12.40 0.00 0.00 3.85
4398 5957 3.222121 CCGCCCCTACTACCGGTC 61.222 72.222 12.40 0.00 36.18 4.79
4400 5959 2.302199 GAAACCGCCCCTACTACCGG 62.302 65.000 0.00 0.00 45.80 5.28
4401 5960 1.142531 GAAACCGCCCCTACTACCG 59.857 63.158 0.00 0.00 0.00 4.02
4402 5961 1.142531 CGAAACCGCCCCTACTACC 59.857 63.158 0.00 0.00 0.00 3.18
4403 5962 1.142531 CCGAAACCGCCCCTACTAC 59.857 63.158 0.00 0.00 0.00 2.73
4404 5963 2.059786 CCCGAAACCGCCCCTACTA 61.060 63.158 0.00 0.00 0.00 1.82
4405 5964 3.396570 CCCGAAACCGCCCCTACT 61.397 66.667 0.00 0.00 0.00 2.57
4406 5965 4.478371 CCCCGAAACCGCCCCTAC 62.478 72.222 0.00 0.00 0.00 3.18
4407 5966 4.718827 TCCCCGAAACCGCCCCTA 62.719 66.667 0.00 0.00 0.00 3.53
4482 6041 3.471244 CTTCTCTAGCCGTCGCCCG 62.471 68.421 0.00 0.00 34.57 6.13
4483 6042 1.664321 TTCTTCTCTAGCCGTCGCCC 61.664 60.000 0.00 0.00 34.57 6.13
4484 6043 0.248702 CTTCTTCTCTAGCCGTCGCC 60.249 60.000 0.00 0.00 34.57 5.54
4485 6044 0.733729 TCTTCTTCTCTAGCCGTCGC 59.266 55.000 0.00 0.00 0.00 5.19
4486 6045 2.678836 TCTTCTTCTTCTCTAGCCGTCG 59.321 50.000 0.00 0.00 0.00 5.12
4487 6046 4.911514 ATCTTCTTCTTCTCTAGCCGTC 57.088 45.455 0.00 0.00 0.00 4.79
4488 6047 5.242838 CCATATCTTCTTCTTCTCTAGCCGT 59.757 44.000 0.00 0.00 0.00 5.68
4489 6048 5.475220 TCCATATCTTCTTCTTCTCTAGCCG 59.525 44.000 0.00 0.00 0.00 5.52
4490 6049 6.071391 CCTCCATATCTTCTTCTTCTCTAGCC 60.071 46.154 0.00 0.00 0.00 3.93
4491 6050 6.493458 ACCTCCATATCTTCTTCTTCTCTAGC 59.507 42.308 0.00 0.00 0.00 3.42
4492 6051 9.231297 CTACCTCCATATCTTCTTCTTCTCTAG 57.769 40.741 0.00 0.00 0.00 2.43
4493 6052 8.950480 TCTACCTCCATATCTTCTTCTTCTCTA 58.050 37.037 0.00 0.00 0.00 2.43
4494 6053 7.821566 TCTACCTCCATATCTTCTTCTTCTCT 58.178 38.462 0.00 0.00 0.00 3.10
4495 6054 8.472007 TTCTACCTCCATATCTTCTTCTTCTC 57.528 38.462 0.00 0.00 0.00 2.87
4496 6055 8.285891 TCTTCTACCTCCATATCTTCTTCTTCT 58.714 37.037 0.00 0.00 0.00 2.85
4497 6056 8.472007 TCTTCTACCTCCATATCTTCTTCTTC 57.528 38.462 0.00 0.00 0.00 2.87
4498 6057 8.846423 TTCTTCTACCTCCATATCTTCTTCTT 57.154 34.615 0.00 0.00 0.00 2.52
4499 6058 8.846423 TTTCTTCTACCTCCATATCTTCTTCT 57.154 34.615 0.00 0.00 0.00 2.85
4500 6059 8.147704 CCTTTCTTCTACCTCCATATCTTCTTC 58.852 40.741 0.00 0.00 0.00 2.87
4501 6060 7.419634 GCCTTTCTTCTACCTCCATATCTTCTT 60.420 40.741 0.00 0.00 0.00 2.52
4502 6061 6.042666 GCCTTTCTTCTACCTCCATATCTTCT 59.957 42.308 0.00 0.00 0.00 2.85
4503 6062 6.227522 GCCTTTCTTCTACCTCCATATCTTC 58.772 44.000 0.00 0.00 0.00 2.87
4504 6063 5.072464 GGCCTTTCTTCTACCTCCATATCTT 59.928 44.000 0.00 0.00 0.00 2.40
4505 6064 4.595350 GGCCTTTCTTCTACCTCCATATCT 59.405 45.833 0.00 0.00 0.00 1.98
4506 6065 4.561734 CGGCCTTTCTTCTACCTCCATATC 60.562 50.000 0.00 0.00 0.00 1.63
4507 6066 3.325135 CGGCCTTTCTTCTACCTCCATAT 59.675 47.826 0.00 0.00 0.00 1.78
4508 6067 2.698797 CGGCCTTTCTTCTACCTCCATA 59.301 50.000 0.00 0.00 0.00 2.74
4509 6068 1.486726 CGGCCTTTCTTCTACCTCCAT 59.513 52.381 0.00 0.00 0.00 3.41
4510 6069 0.902531 CGGCCTTTCTTCTACCTCCA 59.097 55.000 0.00 0.00 0.00 3.86
4511 6070 0.178301 CCGGCCTTTCTTCTACCTCC 59.822 60.000 0.00 0.00 0.00 4.30
4512 6071 0.178301 CCCGGCCTTTCTTCTACCTC 59.822 60.000 0.00 0.00 0.00 3.85
4513 6072 1.911702 GCCCGGCCTTTCTTCTACCT 61.912 60.000 0.00 0.00 0.00 3.08
4514 6073 1.451567 GCCCGGCCTTTCTTCTACC 60.452 63.158 0.00 0.00 0.00 3.18
4515 6074 1.814169 CGCCCGGCCTTTCTTCTAC 60.814 63.158 3.10 0.00 0.00 2.59
4516 6075 2.582436 CGCCCGGCCTTTCTTCTA 59.418 61.111 3.10 0.00 0.00 2.10
4529 6088 4.174129 CGAAATCCAACGGCGCCC 62.174 66.667 23.46 2.84 0.00 6.13
4530 6089 2.374877 GATCGAAATCCAACGGCGCC 62.375 60.000 19.07 19.07 0.00 6.53
4531 6090 1.011131 GATCGAAATCCAACGGCGC 60.011 57.895 6.90 0.00 0.00 6.53
4532 6091 1.272715 CGATCGAAATCCAACGGCG 59.727 57.895 10.26 4.80 0.00 6.46
4533 6092 1.257155 GTACGATCGAAATCCAACGGC 59.743 52.381 24.34 0.00 0.00 5.68
4534 6093 1.515631 CGTACGATCGAAATCCAACGG 59.484 52.381 24.34 1.89 34.94 4.44
4535 6094 2.179589 ACGTACGATCGAAATCCAACG 58.820 47.619 24.34 18.80 40.08 4.10
4536 6095 3.300754 CGAACGTACGATCGAAATCCAAC 60.301 47.826 35.24 3.10 41.82 3.77
4537 6096 2.847717 CGAACGTACGATCGAAATCCAA 59.152 45.455 35.24 0.00 41.82 3.53
4538 6097 2.095692 TCGAACGTACGATCGAAATCCA 59.904 45.455 37.37 20.62 44.18 3.41
4539 6098 2.708514 TCGAACGTACGATCGAAATCC 58.291 47.619 37.37 7.93 44.18 3.01
4544 6103 3.235852 CGATTTTTCGAACGTACGATCGA 59.764 43.478 36.37 36.37 45.14 3.59
4545 6104 3.235852 TCGATTTTTCGAACGTACGATCG 59.764 43.478 33.55 33.55 41.82 3.69
4546 6105 4.261581 AGTCGATTTTTCGAACGTACGATC 59.738 41.667 24.41 19.18 44.12 3.69
4547 6106 4.029861 CAGTCGATTTTTCGAACGTACGAT 59.970 41.667 24.41 10.83 44.12 3.73
4548 6107 3.358700 CAGTCGATTTTTCGAACGTACGA 59.641 43.478 24.41 5.00 44.12 3.43
4549 6108 3.358700 TCAGTCGATTTTTCGAACGTACG 59.641 43.478 15.01 15.01 44.12 3.67
4550 6109 4.432115 GGTCAGTCGATTTTTCGAACGTAC 60.432 45.833 0.00 0.00 44.12 3.67
4551 6110 3.670055 GGTCAGTCGATTTTTCGAACGTA 59.330 43.478 0.00 0.00 44.12 3.57
4552 6111 2.473984 GGTCAGTCGATTTTTCGAACGT 59.526 45.455 0.00 0.00 44.12 3.99
4553 6112 2.159881 GGGTCAGTCGATTTTTCGAACG 60.160 50.000 0.00 0.00 44.12 3.95
4554 6113 2.159881 CGGGTCAGTCGATTTTTCGAAC 60.160 50.000 0.00 0.00 44.12 3.95
4555 6114 2.063266 CGGGTCAGTCGATTTTTCGAA 58.937 47.619 0.00 0.00 44.12 3.71
4556 6115 1.270274 TCGGGTCAGTCGATTTTTCGA 59.730 47.619 0.00 0.00 40.06 3.71
4557 6116 1.705256 TCGGGTCAGTCGATTTTTCG 58.295 50.000 0.00 0.00 0.00 3.46
4564 6123 2.823924 TTTCAAATCGGGTCAGTCGA 57.176 45.000 0.00 0.00 41.04 4.20
4565 6124 3.250040 ACTTTTTCAAATCGGGTCAGTCG 59.750 43.478 0.00 0.00 0.00 4.18
4566 6125 4.274950 TGACTTTTTCAAATCGGGTCAGTC 59.725 41.667 0.00 0.00 0.00 3.51
4567 6126 4.204012 TGACTTTTTCAAATCGGGTCAGT 58.796 39.130 0.00 0.00 0.00 3.41
4568 6127 4.787598 CTGACTTTTTCAAATCGGGTCAG 58.212 43.478 0.00 0.00 41.60 3.51
4569 6128 4.204012 ACTGACTTTTTCAAATCGGGTCA 58.796 39.130 0.00 0.00 32.21 4.02
4570 6129 4.830826 ACTGACTTTTTCAAATCGGGTC 57.169 40.909 0.00 0.00 32.21 4.46
4571 6130 6.320418 AGTTAACTGACTTTTTCAAATCGGGT 59.680 34.615 7.48 0.00 32.21 5.28
4572 6131 6.636850 CAGTTAACTGACTTTTTCAAATCGGG 59.363 38.462 28.17 0.00 46.59 5.14
4573 6132 7.608974 CAGTTAACTGACTTTTTCAAATCGG 57.391 36.000 28.17 0.00 46.59 4.18
4588 6147 3.243336 GAGGCTACACGTCAGTTAACTG 58.757 50.000 26.60 26.60 45.08 3.16
4589 6148 2.889045 TGAGGCTACACGTCAGTTAACT 59.111 45.455 1.12 1.12 38.23 2.24
4590 6149 3.293311 TGAGGCTACACGTCAGTTAAC 57.707 47.619 0.00 0.00 38.23 2.01
4591 6150 3.119245 GGATGAGGCTACACGTCAGTTAA 60.119 47.826 0.00 0.00 45.72 2.01
4592 6151 2.426024 GGATGAGGCTACACGTCAGTTA 59.574 50.000 0.00 0.00 45.72 2.24
4593 6152 1.204941 GGATGAGGCTACACGTCAGTT 59.795 52.381 0.00 0.00 45.72 3.16
4594 6153 0.818296 GGATGAGGCTACACGTCAGT 59.182 55.000 0.00 0.00 45.72 3.41
4595 6154 1.107114 AGGATGAGGCTACACGTCAG 58.893 55.000 0.00 0.00 45.72 3.51
4596 6155 0.817654 CAGGATGAGGCTACACGTCA 59.182 55.000 0.00 0.00 46.51 4.35
4597 6156 0.528684 GCAGGATGAGGCTACACGTC 60.529 60.000 0.00 0.00 39.69 4.34
4598 6157 1.257750 TGCAGGATGAGGCTACACGT 61.258 55.000 0.00 0.00 39.69 4.49
4599 6158 0.108186 TTGCAGGATGAGGCTACACG 60.108 55.000 0.00 0.00 39.69 4.49
4600 6159 2.113860 TTTGCAGGATGAGGCTACAC 57.886 50.000 0.00 0.00 39.69 2.90
4601 6160 3.745480 GCTATTTGCAGGATGAGGCTACA 60.745 47.826 0.00 0.00 39.69 2.74
4602 6161 2.810852 GCTATTTGCAGGATGAGGCTAC 59.189 50.000 0.00 0.00 39.69 3.58
4603 6162 2.224621 GGCTATTTGCAGGATGAGGCTA 60.225 50.000 0.00 0.00 45.15 3.93
4604 6163 1.478288 GGCTATTTGCAGGATGAGGCT 60.478 52.381 0.00 0.00 45.15 4.58
4605 6164 0.957362 GGCTATTTGCAGGATGAGGC 59.043 55.000 0.00 0.00 45.15 4.70
4606 6165 1.133699 TGGGCTATTTGCAGGATGAGG 60.134 52.381 0.00 0.00 45.15 3.86
4607 6166 2.353357 TGGGCTATTTGCAGGATGAG 57.647 50.000 0.00 0.00 45.15 2.90
4608 6167 2.960384 CAATGGGCTATTTGCAGGATGA 59.040 45.455 0.00 0.00 45.15 2.92
4609 6168 2.036733 CCAATGGGCTATTTGCAGGATG 59.963 50.000 0.00 0.00 45.15 3.51
4610 6169 2.322658 CCAATGGGCTATTTGCAGGAT 58.677 47.619 0.00 0.00 45.15 3.24
4611 6170 1.779221 CCAATGGGCTATTTGCAGGA 58.221 50.000 0.00 0.00 45.15 3.86
4647 6206 2.103153 AACCTGGGTCTCTCAAGTGA 57.897 50.000 0.00 0.00 0.00 3.41
4659 6218 0.394899 GAGCTGGGATCAAACCTGGG 60.395 60.000 0.00 0.00 0.00 4.45
4802 6372 8.843733 CATGCACGATAATAGCATATTTGAAAC 58.156 33.333 0.00 0.00 46.39 2.78


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.