Multiple sequence alignment - TraesCS4A01G128500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G128500 chr4A 100.000 4297 0 0 1 4297 165414517 165410221 0.000000e+00 7936.0
1 TraesCS4A01G128500 chr4A 97.802 91 2 0 3560 3650 690358227 690358137 1.600000e-34 158.0
2 TraesCS4A01G128500 chr4A 92.000 50 2 2 239 286 655264476 655264427 7.710000e-08 69.4
3 TraesCS4A01G128500 chr4A 90.000 50 3 2 239 286 655264875 655264826 3.590000e-06 63.9
4 TraesCS4A01G128500 chr4B 90.293 1638 90 28 1948 3524 386490516 386492145 0.000000e+00 2080.0
5 TraesCS4A01G128500 chr4B 86.817 933 98 13 1 913 386464778 386465705 0.000000e+00 1018.0
6 TraesCS4A01G128500 chr4B 88.357 773 80 7 3528 4297 386492838 386493603 0.000000e+00 920.0
7 TraesCS4A01G128500 chr4B 82.353 102 16 2 321 421 559158454 559158554 2.130000e-13 87.9
8 TraesCS4A01G128500 chr4D 83.216 2139 256 46 1 2082 309622443 309624535 0.000000e+00 1866.0
9 TraesCS4A01G128500 chr4D 94.598 907 26 3 2556 3439 309627903 309628809 0.000000e+00 1382.0
10 TraesCS4A01G128500 chr4D 84.473 1301 180 15 443 1732 509018383 509019672 0.000000e+00 1264.0
11 TraesCS4A01G128500 chr4D 89.031 547 51 7 3758 4297 309630957 309631501 0.000000e+00 669.0
12 TraesCS4A01G128500 chr4D 80.359 835 136 22 1002 1816 82863209 82862383 3.670000e-170 608.0
13 TraesCS4A01G128500 chr4D 76.254 977 155 38 800 1741 82520935 82520001 8.480000e-122 448.0
14 TraesCS4A01G128500 chr4D 90.204 245 9 3 3417 3646 309629157 309629401 5.400000e-79 305.0
15 TraesCS4A01G128500 chr4D 88.213 263 15 8 2098 2351 309626528 309626783 2.510000e-77 300.0
16 TraesCS4A01G128500 chr4D 88.764 178 20 0 3589 3766 309629401 309629578 7.230000e-53 219.0
17 TraesCS4A01G128500 chr4D 95.652 46 2 0 2454 2499 309626860 309626905 1.660000e-09 75.0
18 TraesCS4A01G128500 chr4D 100.000 40 0 0 2531 2570 309627845 309627884 1.660000e-09 75.0
19 TraesCS4A01G128500 chr7B 79.946 1471 226 39 443 1857 379207967 379206510 0.000000e+00 1018.0
20 TraesCS4A01G128500 chr7B 85.336 566 68 14 440 998 550452236 550452793 4.820000e-159 571.0
21 TraesCS4A01G128500 chr1D 79.604 1466 213 37 443 1852 221023614 221022179 0.000000e+00 972.0
22 TraesCS4A01G128500 chr1D 82.890 602 97 6 414 1013 361800479 361801076 1.760000e-148 536.0
23 TraesCS4A01G128500 chr2A 80.029 1392 202 44 442 1799 673175319 673173970 0.000000e+00 961.0
24 TraesCS4A01G128500 chr2A 80.583 1303 180 38 442 1710 673026508 673025245 0.000000e+00 937.0
25 TraesCS4A01G128500 chr2A 89.362 47 3 2 239 283 738117541 738117587 1.670000e-04 58.4
26 TraesCS4A01G128500 chr7D 81.566 1188 162 27 733 1868 484990085 484991267 0.000000e+00 928.0
27 TraesCS4A01G128500 chr7D 84.364 582 81 9 440 1013 517336827 517337406 2.900000e-156 562.0
28 TraesCS4A01G128500 chr7D 86.408 103 12 1 321 421 5173609 5173711 1.260000e-20 111.0
29 TraesCS4A01G128500 chr5A 82.014 1112 167 24 497 1579 575278250 575279357 0.000000e+00 915.0
30 TraesCS4A01G128500 chr2D 79.026 1273 172 46 530 1742 16118816 16117579 0.000000e+00 784.0
31 TraesCS4A01G128500 chr2D 92.233 103 6 2 3549 3650 518251477 518251376 1.250000e-30 145.0
32 TraesCS4A01G128500 chr6A 79.121 1183 182 39 441 1586 599304797 599303643 0.000000e+00 756.0
33 TraesCS4A01G128500 chr6A 80.349 860 142 18 1015 1857 113541389 113542238 1.010000e-175 627.0
34 TraesCS4A01G128500 chr1A 77.439 1312 229 45 651 1917 257982328 257983617 0.000000e+00 721.0
35 TraesCS4A01G128500 chr1A 97.297 37 0 1 255 290 28643714 28643750 1.290000e-05 62.1
36 TraesCS4A01G128500 chr6D 82.367 828 124 13 1003 1816 95716492 95715673 0.000000e+00 701.0
37 TraesCS4A01G128500 chr6D 87.379 103 11 2 321 421 115633403 115633505 2.710000e-22 117.0
38 TraesCS4A01G128500 chr3D 81.951 820 129 10 1064 1869 120634330 120633516 0.000000e+00 676.0
39 TraesCS4A01G128500 chr3D 84.884 86 12 1 321 406 7570797 7570713 7.660000e-13 86.1
40 TraesCS4A01G128500 chr7A 87.002 577 70 5 440 1013 553237134 553237708 0.000000e+00 645.0
41 TraesCS4A01G128500 chr7A 83.654 104 14 1 321 421 610191315 610191212 1.270000e-15 95.3
42 TraesCS4A01G128500 chrUn 83.926 647 101 3 1170 1814 101358986 101359631 2.200000e-172 616.0
43 TraesCS4A01G128500 chr2B 77.885 312 42 20 137 428 583417605 583417301 7.390000e-38 169.0
44 TraesCS4A01G128500 chr3B 86.755 151 18 1 1003 1153 406910628 406910480 2.660000e-37 167.0
45 TraesCS4A01G128500 chr3B 97.778 90 2 0 3561 3650 283640226 283640137 5.750000e-34 156.0
46 TraesCS4A01G128500 chr6B 95.876 97 4 0 3554 3650 671130506 671130410 1.600000e-34 158.0
47 TraesCS4A01G128500 chr6B 96.809 94 2 1 3557 3650 708222287 708222195 5.750000e-34 156.0
48 TraesCS4A01G128500 chr5B 96.739 92 2 1 3557 3648 382536775 382536685 7.440000e-33 152.0
49 TraesCS4A01G128500 chr5D 80.663 181 26 8 152 325 526753339 526753161 9.700000e-27 132.0
50 TraesCS4A01G128500 chr5D 81.176 85 11 5 204 286 376295582 376295501 3.590000e-06 63.9
51 TraesCS4A01G128500 chr1B 88.000 50 5 1 238 286 264347710 264347759 1.670000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G128500 chr4A 165410221 165414517 4296 True 7936.000 7936 100.00000 1 4297 1 chr4A.!!$R1 4296
1 TraesCS4A01G128500 chr4B 386490516 386493603 3087 False 1500.000 2080 89.32500 1948 4297 2 chr4B.!!$F3 2349
2 TraesCS4A01G128500 chr4B 386464778 386465705 927 False 1018.000 1018 86.81700 1 913 1 chr4B.!!$F1 912
3 TraesCS4A01G128500 chr4D 509018383 509019672 1289 False 1264.000 1264 84.47300 443 1732 1 chr4D.!!$F1 1289
4 TraesCS4A01G128500 chr4D 309622443 309631501 9058 False 611.375 1866 91.20975 1 4297 8 chr4D.!!$F2 4296
5 TraesCS4A01G128500 chr4D 82862383 82863209 826 True 608.000 608 80.35900 1002 1816 1 chr4D.!!$R2 814
6 TraesCS4A01G128500 chr4D 82520001 82520935 934 True 448.000 448 76.25400 800 1741 1 chr4D.!!$R1 941
7 TraesCS4A01G128500 chr7B 379206510 379207967 1457 True 1018.000 1018 79.94600 443 1857 1 chr7B.!!$R1 1414
8 TraesCS4A01G128500 chr7B 550452236 550452793 557 False 571.000 571 85.33600 440 998 1 chr7B.!!$F1 558
9 TraesCS4A01G128500 chr1D 221022179 221023614 1435 True 972.000 972 79.60400 443 1852 1 chr1D.!!$R1 1409
10 TraesCS4A01G128500 chr1D 361800479 361801076 597 False 536.000 536 82.89000 414 1013 1 chr1D.!!$F1 599
11 TraesCS4A01G128500 chr2A 673173970 673175319 1349 True 961.000 961 80.02900 442 1799 1 chr2A.!!$R2 1357
12 TraesCS4A01G128500 chr2A 673025245 673026508 1263 True 937.000 937 80.58300 442 1710 1 chr2A.!!$R1 1268
13 TraesCS4A01G128500 chr7D 484990085 484991267 1182 False 928.000 928 81.56600 733 1868 1 chr7D.!!$F2 1135
14 TraesCS4A01G128500 chr7D 517336827 517337406 579 False 562.000 562 84.36400 440 1013 1 chr7D.!!$F3 573
15 TraesCS4A01G128500 chr5A 575278250 575279357 1107 False 915.000 915 82.01400 497 1579 1 chr5A.!!$F1 1082
16 TraesCS4A01G128500 chr2D 16117579 16118816 1237 True 784.000 784 79.02600 530 1742 1 chr2D.!!$R1 1212
17 TraesCS4A01G128500 chr6A 599303643 599304797 1154 True 756.000 756 79.12100 441 1586 1 chr6A.!!$R1 1145
18 TraesCS4A01G128500 chr6A 113541389 113542238 849 False 627.000 627 80.34900 1015 1857 1 chr6A.!!$F1 842
19 TraesCS4A01G128500 chr1A 257982328 257983617 1289 False 721.000 721 77.43900 651 1917 1 chr1A.!!$F2 1266
20 TraesCS4A01G128500 chr6D 95715673 95716492 819 True 701.000 701 82.36700 1003 1816 1 chr6D.!!$R1 813
21 TraesCS4A01G128500 chr3D 120633516 120634330 814 True 676.000 676 81.95100 1064 1869 1 chr3D.!!$R2 805
22 TraesCS4A01G128500 chr7A 553237134 553237708 574 False 645.000 645 87.00200 440 1013 1 chr7A.!!$F1 573
23 TraesCS4A01G128500 chrUn 101358986 101359631 645 False 616.000 616 83.92600 1170 1814 1 chrUn.!!$F1 644

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
69 71 0.744874 TGTAGATGCCCTAGCGTGTC 59.255 55.0 0.0 0.0 44.31 3.67 F
1451 1601 0.245266 TGCGATTCTTGCCTGTCGTA 59.755 50.0 0.0 0.0 36.53 3.43 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1516 1668 0.110688 CACACATCCGTTCACAAGCG 60.111 55.0 0.00 0.00 0.00 4.68 R
3352 6519 0.592637 TACTACACCGGTCACGTGTG 59.407 55.0 16.51 8.54 42.78 3.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 7.222999 CCACAAACGTTTAAGAAGCCAAATTTA 59.777 33.333 14.20 0.00 0.00 1.40
41 42 7.402811 AACGTTTAAGAAGCCAAATTTAAGC 57.597 32.000 0.00 4.58 0.00 3.09
46 48 9.855021 GTTTAAGAAGCCAAATTTAAGCAGATA 57.145 29.630 13.21 1.23 0.00 1.98
69 71 0.744874 TGTAGATGCCCTAGCGTGTC 59.255 55.000 0.00 0.00 44.31 3.67
81 83 3.118454 CGTGTCGCATGTCCACCC 61.118 66.667 0.00 0.00 0.00 4.61
126 128 5.181748 GTGATACCAACTCTCAAATGCTCT 58.818 41.667 0.00 0.00 0.00 4.09
255 262 6.507958 TTCGGAATGCACATTGAGAAATAA 57.492 33.333 0.00 0.00 0.00 1.40
258 265 7.374272 TCGGAATGCACATTGAGAAATAAAAA 58.626 30.769 0.00 0.00 0.00 1.94
351 368 5.586339 TCTCAATTTGTGTTTCGCATTTCA 58.414 33.333 0.00 0.00 0.00 2.69
393 410 3.987220 TGTACACTCATGTGATGTGAACG 59.013 43.478 14.91 0.00 46.55 3.95
487 506 0.810031 ATTTTCTCCCGCATCCGTCG 60.810 55.000 0.00 0.00 0.00 5.12
648 675 4.897025 TTGTACAAACCGGACGAAAATT 57.103 36.364 9.46 0.00 0.00 1.82
780 817 3.065575 CGGATCCCTTTGTCTTCCG 57.934 57.895 6.06 0.00 42.79 4.30
851 890 2.248160 TCTTCCCCCGTATCTTCCCTAA 59.752 50.000 0.00 0.00 0.00 2.69
855 894 1.612463 CCCCGTATCTTCCCTAAGTCG 59.388 57.143 0.00 0.00 34.13 4.18
930 974 1.419387 GCTTCTATGGAGCCAGATGGT 59.581 52.381 0.00 0.00 37.57 3.55
1097 1168 1.671850 CGCAACCGGCTTCTTTCTCTA 60.672 52.381 0.00 0.00 41.67 2.43
1124 1195 4.580044 CACGGCTAAGCGCGCATG 62.580 66.667 35.10 22.45 40.44 4.06
1227 1373 2.357034 TTCGAGCGGTGAGTTGCC 60.357 61.111 0.00 0.00 0.00 4.52
1288 1434 2.575455 CTAGGCGAGGGAGGTGGAGT 62.575 65.000 0.00 0.00 0.00 3.85
1447 1597 1.073025 TGGTGCGATTCTTGCCTGT 59.927 52.632 0.00 0.00 0.00 4.00
1451 1601 0.245266 TGCGATTCTTGCCTGTCGTA 59.755 50.000 0.00 0.00 36.53 3.43
1480 1632 3.181497 CGTTTAAATAGAGGACGGACGGA 60.181 47.826 0.00 0.00 0.00 4.69
1516 1668 4.201679 GCGTTTAATGCCGGCCCC 62.202 66.667 26.77 3.93 0.00 5.80
1537 1689 1.877637 CTTGTGAACGGATGTGTGGA 58.122 50.000 0.00 0.00 0.00 4.02
1582 1748 0.730840 CGGGTTTAATGGAGGCGTTC 59.269 55.000 0.00 0.00 0.00 3.95
1687 1871 3.039588 GGTCGCGTTCGCCTTGAA 61.040 61.111 5.77 0.00 35.26 2.69
1752 1936 2.809119 CGAGTAGCTGGACGATAGATGT 59.191 50.000 0.00 0.00 41.38 3.06
1786 1974 0.178973 CGAAGGGAGGGGTTTTGGTT 60.179 55.000 0.00 0.00 0.00 3.67
1816 2004 0.739813 GTTAGAAGCGGGCGTGACAT 60.740 55.000 0.00 0.00 0.00 3.06
1818 2006 1.320344 TAGAAGCGGGCGTGACATCT 61.320 55.000 0.00 0.00 0.00 2.90
1819 2007 2.125512 AAGCGGGCGTGACATCTC 60.126 61.111 0.00 0.00 0.00 2.75
1823 2014 2.815308 GGGCGTGACATCTCGGAT 59.185 61.111 5.60 0.00 33.93 4.18
1857 2049 8.868522 ATCTCTTCATGTTTGTCTCCAATTTA 57.131 30.769 0.00 0.00 0.00 1.40
1859 2051 9.300681 TCTCTTCATGTTTGTCTCCAATTTATT 57.699 29.630 0.00 0.00 0.00 1.40
1892 2084 0.821301 TTGGACCACTGCGCAAATCA 60.821 50.000 13.05 1.34 0.00 2.57
1901 2093 4.439153 CCACTGCGCAAATCAATACAGATT 60.439 41.667 13.05 0.00 39.81 2.40
1903 2095 4.395854 ACTGCGCAAATCAATACAGATTCA 59.604 37.500 13.05 0.00 37.24 2.57
1904 2096 4.661125 TGCGCAAATCAATACAGATTCAC 58.339 39.130 8.16 0.00 37.24 3.18
1906 2098 5.163632 TGCGCAAATCAATACAGATTCACAT 60.164 36.000 8.16 0.00 37.24 3.21
1907 2099 5.745294 GCGCAAATCAATACAGATTCACATT 59.255 36.000 0.30 0.00 37.24 2.71
1908 2100 6.291427 GCGCAAATCAATACAGATTCACATTG 60.291 38.462 0.30 0.00 37.24 2.82
1909 2101 6.197655 CGCAAATCAATACAGATTCACATTGG 59.802 38.462 0.00 0.00 37.24 3.16
1910 2102 7.259882 GCAAATCAATACAGATTCACATTGGA 58.740 34.615 0.00 0.00 37.24 3.53
1913 2105 6.381481 TCAATACAGATTCACATTGGATGC 57.619 37.500 0.00 0.00 0.00 3.91
1914 2106 5.300034 TCAATACAGATTCACATTGGATGCC 59.700 40.000 0.00 0.00 0.00 4.40
1915 2107 3.377253 ACAGATTCACATTGGATGCCT 57.623 42.857 0.00 0.00 0.00 4.75
1916 2108 3.705051 ACAGATTCACATTGGATGCCTT 58.295 40.909 0.00 0.00 0.00 4.35
1917 2109 3.698040 ACAGATTCACATTGGATGCCTTC 59.302 43.478 0.00 0.00 0.00 3.46
1918 2110 3.952323 CAGATTCACATTGGATGCCTTCT 59.048 43.478 0.00 0.00 0.00 2.85
1921 2113 2.905075 TCACATTGGATGCCTTCTACG 58.095 47.619 0.00 0.00 0.00 3.51
1926 2118 1.944778 GGATGCCTTCTACGCATGC 59.055 57.895 7.91 7.91 46.76 4.06
1927 2119 2.694065 GATGCCTTCTACGCATGCA 58.306 52.632 19.57 0.00 46.76 3.96
1932 2124 1.468054 GCCTTCTACGCATGCAAAAGG 60.468 52.381 23.13 23.13 37.04 3.11
1941 2133 1.799544 CATGCAAAAGGTTTGAGGGC 58.200 50.000 4.93 0.00 0.00 5.19
1942 2134 1.345415 CATGCAAAAGGTTTGAGGGCT 59.655 47.619 4.93 0.00 0.00 5.19
1943 2135 2.373335 TGCAAAAGGTTTGAGGGCTA 57.627 45.000 4.93 0.00 0.00 3.93
1944 2136 1.960689 TGCAAAAGGTTTGAGGGCTAC 59.039 47.619 4.93 0.00 0.00 3.58
1945 2137 1.068541 GCAAAAGGTTTGAGGGCTACG 60.069 52.381 4.93 0.00 0.00 3.51
1946 2138 2.227194 CAAAAGGTTTGAGGGCTACGT 58.773 47.619 0.00 0.00 0.00 3.57
1948 2140 1.892209 AAGGTTTGAGGGCTACGTTG 58.108 50.000 0.00 0.00 0.00 4.10
1949 2141 0.036306 AGGTTTGAGGGCTACGTTGG 59.964 55.000 0.00 0.00 0.00 3.77
1950 2142 0.035739 GGTTTGAGGGCTACGTTGGA 59.964 55.000 0.00 0.00 0.00 3.53
1951 2143 1.543871 GGTTTGAGGGCTACGTTGGAA 60.544 52.381 0.00 0.00 0.00 3.53
1952 2144 2.223745 GTTTGAGGGCTACGTTGGAAA 58.776 47.619 0.00 0.00 0.00 3.13
1953 2145 2.817844 GTTTGAGGGCTACGTTGGAAAT 59.182 45.455 0.00 0.00 0.00 2.17
1954 2146 2.107950 TGAGGGCTACGTTGGAAATG 57.892 50.000 0.00 0.00 39.23 2.32
1955 2147 1.626321 TGAGGGCTACGTTGGAAATGA 59.374 47.619 0.00 0.00 36.03 2.57
1956 2148 2.007608 GAGGGCTACGTTGGAAATGAC 58.992 52.381 0.00 0.00 36.03 3.06
1965 2157 4.566987 ACGTTGGAAATGACCTAAGAGAC 58.433 43.478 0.00 0.00 36.03 3.36
1973 2165 2.816411 TGACCTAAGAGACGGGAACAT 58.184 47.619 0.00 0.00 0.00 2.71
1990 2182 4.322349 GGAACATCTGATATTCTCCCCTCG 60.322 50.000 8.43 0.00 0.00 4.63
2059 2252 1.083489 TTGCTTAACAGGATTCGCCG 58.917 50.000 0.00 0.00 43.43 6.46
2064 2257 3.388841 ACAGGATTCGCCGGTTCT 58.611 55.556 1.90 0.00 42.87 3.01
2078 2271 2.038033 CCGGTTCTCCCAGTTTAGTCAA 59.962 50.000 0.00 0.00 0.00 3.18
2082 2275 4.445879 GGTTCTCCCAGTTTAGTCAAAGGT 60.446 45.833 0.00 0.00 0.00 3.50
2083 2276 5.131067 GTTCTCCCAGTTTAGTCAAAGGTT 58.869 41.667 0.00 0.00 0.00 3.50
2084 2277 4.714632 TCTCCCAGTTTAGTCAAAGGTTG 58.285 43.478 0.00 0.00 0.00 3.77
2085 2278 3.219281 TCCCAGTTTAGTCAAAGGTTGC 58.781 45.455 0.00 0.00 0.00 4.17
2086 2279 3.117663 TCCCAGTTTAGTCAAAGGTTGCT 60.118 43.478 0.00 0.00 0.00 3.91
2087 2280 3.636764 CCCAGTTTAGTCAAAGGTTGCTT 59.363 43.478 0.00 0.00 0.00 3.91
2088 2281 4.099419 CCCAGTTTAGTCAAAGGTTGCTTT 59.901 41.667 0.00 0.00 0.00 3.51
2089 2282 5.281727 CCAGTTTAGTCAAAGGTTGCTTTC 58.718 41.667 0.00 0.00 0.00 2.62
2090 2283 5.067805 CCAGTTTAGTCAAAGGTTGCTTTCT 59.932 40.000 0.00 0.00 0.00 2.52
2093 2286 7.226720 CAGTTTAGTCAAAGGTTGCTTTCTCTA 59.773 37.037 0.00 0.00 0.00 2.43
2095 2288 9.216117 GTTTAGTCAAAGGTTGCTTTCTCTATA 57.784 33.333 0.00 0.00 0.00 1.31
2096 2289 8.773404 TTAGTCAAAGGTTGCTTTCTCTATAC 57.227 34.615 0.00 0.00 0.00 1.47
2121 4291 2.358737 ACCCTTCTTGAAGCGCCG 60.359 61.111 2.29 0.00 0.00 6.46
2183 4354 8.970020 AGTTGATTATTGTGCTTTCATATGGAA 58.030 29.630 2.13 0.00 0.00 3.53
2193 4364 7.558807 TGTGCTTTCATATGGAATTCAGAAGAT 59.441 33.333 7.93 0.00 34.91 2.40
2217 4388 0.449388 GAAACGGAAGCAGCCATGAG 59.551 55.000 0.00 0.00 0.00 2.90
2230 4401 0.604578 CCATGAGGTTGGCCAACAAG 59.395 55.000 41.33 26.83 42.85 3.16
2245 4416 0.588252 ACAAGACATGACTGCGTTGC 59.412 50.000 0.00 0.00 0.00 4.17
2326 4509 9.636789 TTAGGTAGATGTTAATACTGTGCTAGA 57.363 33.333 0.00 0.00 0.00 2.43
2327 4510 7.942990 AGGTAGATGTTAATACTGTGCTAGAC 58.057 38.462 0.00 0.00 0.00 2.59
2328 4511 7.780745 AGGTAGATGTTAATACTGTGCTAGACT 59.219 37.037 0.00 0.00 0.00 3.24
2433 4621 9.717942 GAGTGGATAGCTGATACTAATTGAAAT 57.282 33.333 0.00 0.00 0.00 2.17
2447 4635 8.324163 ACTAATTGAAATGCGTAGAAGTTTCT 57.676 30.769 0.00 0.00 41.24 2.52
2501 4692 2.759114 CACCTGGGTGCTGGTCAT 59.241 61.111 6.84 0.00 39.39 3.06
2505 4696 1.588082 CTGGGTGCTGGTCATTTGC 59.412 57.895 0.00 0.00 0.00 3.68
2526 5615 1.598685 GGTCCAAAGAAACGGCCGA 60.599 57.895 35.90 1.64 0.00 5.54
2527 5616 1.167781 GGTCCAAAGAAACGGCCGAA 61.168 55.000 35.90 1.91 0.00 4.30
2528 5617 0.237498 GTCCAAAGAAACGGCCGAAG 59.763 55.000 35.90 12.30 0.00 3.79
2575 5707 2.126596 CAAGCACAGGCCACACCAA 61.127 57.895 5.01 0.00 43.14 3.67
2743 5886 1.618837 TCTTGTCCTCAGGTACAGCAC 59.381 52.381 0.00 0.00 0.00 4.40
2780 5923 3.329386 TCTCAACTCCGCTTTGATCTTG 58.671 45.455 0.00 0.00 32.57 3.02
2814 5957 3.914426 ATCGTTTCCCTATCTGCAAGT 57.086 42.857 0.00 0.00 33.76 3.16
2854 5997 5.061808 CGGTGACTCCTTTTATTAGTTCGTG 59.938 44.000 0.00 0.00 0.00 4.35
2889 6032 6.395426 TCATCAATATCCATGACCTTTTGC 57.605 37.500 0.00 0.00 0.00 3.68
2955 6098 3.371063 CAGTGCAGCCAAGGCAGG 61.371 66.667 14.40 6.14 42.85 4.85
3323 6490 1.350319 GCGTGCGTGTGTTTCTTCA 59.650 52.632 0.00 0.00 0.00 3.02
3324 6491 0.041312 GCGTGCGTGTGTTTCTTCAT 60.041 50.000 0.00 0.00 0.00 2.57
3329 6496 1.069227 GCGTGTGTTTCTTCATGGGAC 60.069 52.381 0.00 0.00 0.00 4.46
3352 6519 2.380410 CGTACCGTGCTGCTTGGTC 61.380 63.158 17.44 10.03 37.20 4.02
3359 6526 2.179547 TGCTGCTTGGTCACACGTG 61.180 57.895 15.48 15.48 0.00 4.49
3472 7013 3.753797 AGAGAAGAGCGTTTCATTTTCCC 59.246 43.478 6.11 0.00 0.00 3.97
3524 7065 6.559810 TGTATATCACCCGCAATTTTCTTTG 58.440 36.000 0.00 0.00 0.00 2.77
3526 7067 1.147473 CACCCGCAATTTTCTTTGGC 58.853 50.000 0.00 0.00 0.00 4.52
3586 7816 4.982295 GTGTTTGGATGTAGGAAAAACTGC 59.018 41.667 0.00 0.00 33.07 4.40
3713 8000 8.810652 TTTTGAATCTATTTCAGGTTTTTCGG 57.189 30.769 0.00 0.00 44.90 4.30
3731 8018 1.491274 GGGTTCGGGGTTAGTTGGGA 61.491 60.000 0.00 0.00 0.00 4.37
3736 8023 0.908180 CGGGGTTAGTTGGGAGAGGT 60.908 60.000 0.00 0.00 0.00 3.85
3740 8027 2.107726 GGGTTAGTTGGGAGAGGTGTTT 59.892 50.000 0.00 0.00 0.00 2.83
3741 8028 3.436035 GGGTTAGTTGGGAGAGGTGTTTT 60.436 47.826 0.00 0.00 0.00 2.43
3742 8029 4.212716 GGTTAGTTGGGAGAGGTGTTTTT 58.787 43.478 0.00 0.00 0.00 1.94
3778 9452 4.621460 ACGTCTGTGATAACTTCGTCAATG 59.379 41.667 0.00 0.00 0.00 2.82
3794 9468 2.816672 TCAATGTTAAGATGTTGCGCCA 59.183 40.909 4.18 0.00 0.00 5.69
3800 9475 1.317613 AAGATGTTGCGCCAGTTCAA 58.682 45.000 4.18 0.00 0.00 2.69
3804 9479 0.743688 TGTTGCGCCAGTTCAACATT 59.256 45.000 4.18 0.00 45.09 2.71
3877 9552 8.675504 GCTAAGTGTATATCCGTGTATATGAGT 58.324 37.037 0.00 0.00 0.00 3.41
3919 9594 6.627243 TGTTCATAGAGCTAAATGTACACGT 58.373 36.000 13.10 0.00 31.15 4.49
3921 9596 6.203808 TCATAGAGCTAAATGTACACGTGT 57.796 37.500 26.52 26.52 0.00 4.49
3942 9617 6.317088 GTGTATATACGAGTATTTGCGGCTA 58.683 40.000 8.33 0.00 0.00 3.93
3945 9620 8.676401 TGTATATACGAGTATTTGCGGCTATAA 58.324 33.333 8.33 0.00 0.00 0.98
3998 9673 9.543018 GTACTAACAATCAAACTATGAAAGCAC 57.457 33.333 0.00 0.00 42.54 4.40
4008 9683 6.494893 AACTATGAAAGCACGCAATTTCTA 57.505 33.333 7.91 0.00 36.57 2.10
4067 9742 4.260948 GCCACTCTCTTTCTGTGACAAAAG 60.261 45.833 11.45 11.45 33.95 2.27
4072 9749 6.094186 ACTCTCTTTCTGTGACAAAAGAAACC 59.906 38.462 17.25 0.00 40.09 3.27
4074 9751 5.013547 TCTTTCTGTGACAAAAGAAACCCA 58.986 37.500 15.49 0.00 38.27 4.51
4079 9758 4.090090 TGTGACAAAAGAAACCCAAAGGA 58.910 39.130 0.00 0.00 36.73 3.36
4084 9763 4.962362 ACAAAAGAAACCCAAAGGACATCT 59.038 37.500 0.00 0.00 36.73 2.90
4087 9766 6.650427 AAAGAAACCCAAAGGACATCTTAC 57.350 37.500 0.00 0.00 34.24 2.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 3.181450 GGGCATCTACAACCTATCTGCTT 60.181 47.826 0.00 0.00 0.00 3.91
41 42 4.322349 GCTAGGGCATCTACAACCTATCTG 60.322 50.000 0.00 0.00 35.22 2.90
46 48 0.753262 CGCTAGGGCATCTACAACCT 59.247 55.000 0.00 0.00 38.60 3.50
69 71 1.024046 TTTCATCGGGTGGACATGCG 61.024 55.000 0.00 0.00 0.00 4.73
73 75 0.037590 CCCTTTTCATCGGGTGGACA 59.962 55.000 0.00 0.00 35.65 4.02
81 83 5.468072 CACCTGATATTCTCCCTTTTCATCG 59.532 44.000 0.00 0.00 0.00 3.84
177 184 7.917505 GGAACATTCCTTATGAACATTCATGTC 59.082 37.037 15.83 2.07 44.30 3.06
258 265 7.599998 GCCACTATTCACATTCAAATTTGTCTT 59.400 33.333 17.47 1.76 0.00 3.01
270 277 9.777297 AAAAGTTAAAATGCCACTATTCACATT 57.223 25.926 0.00 0.00 34.30 2.71
335 352 5.578336 TGTCAAAATGAAATGCGAAACACAA 59.422 32.000 0.00 0.00 0.00 3.33
351 368 9.705290 GTGTACAATCCCTAAAAATGTCAAAAT 57.295 29.630 0.00 0.00 0.00 1.82
421 440 6.071560 GCCCTTAGGTGCTTTAATGTTAAACT 60.072 38.462 0.00 0.00 34.57 2.66
487 506 2.352805 CTGGTCCCCTTGTCTGCC 59.647 66.667 0.00 0.00 0.00 4.85
628 655 3.626670 ACAATTTTCGTCCGGTTTGTACA 59.373 39.130 0.00 0.00 0.00 2.90
674 702 5.754778 ACGTGCACATAGTTTAACCTTTTC 58.245 37.500 18.64 0.00 0.00 2.29
682 710 4.971830 GCGACTATACGTGCACATAGTTTA 59.028 41.667 23.38 10.72 37.94 2.01
930 974 1.833630 CTCAGACCATCCTAGGCACAA 59.166 52.381 2.96 0.00 0.00 3.33
1227 1373 3.434319 AAGCCGGTGCATGCTTCG 61.434 61.111 20.33 20.52 44.12 3.79
1447 1597 5.508489 CCTCTATTTAAACGAGGCCATACGA 60.508 44.000 20.27 1.88 38.05 3.43
1451 1601 4.704965 GTCCTCTATTTAAACGAGGCCAT 58.295 43.478 22.05 0.00 43.16 4.40
1516 1668 0.110688 CACACATCCGTTCACAAGCG 60.111 55.000 0.00 0.00 0.00 4.68
1537 1689 1.765230 AGCCGAGAAATCTACTCCGT 58.235 50.000 0.00 0.00 0.00 4.69
1604 1770 4.960866 TGCTGCACACCTGGCTGG 62.961 66.667 9.11 9.11 42.93 4.85
1687 1871 1.367840 GCTCCACACTGAAGACGGT 59.632 57.895 0.00 0.00 35.84 4.83
1714 1898 4.179926 ACTCGCATTCATATCGCTGTAT 57.820 40.909 0.00 0.00 0.00 2.29
1746 1930 1.202371 CCCTCGTGCGCTTTACATCTA 60.202 52.381 9.73 0.00 0.00 1.98
1786 1974 2.931105 TTCTAACCGCCCTGGCCA 60.931 61.111 4.71 4.71 43.94 5.36
1816 2004 5.185828 TGAAGAGATTTGTGAGAATCCGAGA 59.814 40.000 0.00 0.00 36.84 4.04
1818 2006 5.405935 TGAAGAGATTTGTGAGAATCCGA 57.594 39.130 0.00 0.00 36.84 4.55
1819 2007 5.583854 ACATGAAGAGATTTGTGAGAATCCG 59.416 40.000 0.00 0.00 36.84 4.18
1823 2014 7.500227 AGACAAACATGAAGAGATTTGTGAGAA 59.500 33.333 12.87 0.00 43.46 2.87
1859 2051 7.441157 CGCAGTGGTCCAAATATATTTTCTCTA 59.559 37.037 8.01 0.00 0.00 2.43
1870 2062 1.610363 TTTGCGCAGTGGTCCAAATA 58.390 45.000 11.31 0.00 0.00 1.40
1873 2065 0.821301 TGATTTGCGCAGTGGTCCAA 60.821 50.000 11.31 0.00 0.00 3.53
1882 2074 4.155644 TGTGAATCTGTATTGATTTGCGCA 59.844 37.500 5.66 5.66 36.86 6.09
1883 2075 4.661125 TGTGAATCTGTATTGATTTGCGC 58.339 39.130 0.00 0.00 36.86 6.09
1892 2084 5.452255 AGGCATCCAATGTGAATCTGTATT 58.548 37.500 0.00 0.00 0.00 1.89
1901 2093 2.905075 CGTAGAAGGCATCCAATGTGA 58.095 47.619 0.00 0.00 0.00 3.58
1903 2095 1.065491 TGCGTAGAAGGCATCCAATGT 60.065 47.619 0.00 0.00 33.67 2.71
1904 2096 1.667236 TGCGTAGAAGGCATCCAATG 58.333 50.000 0.00 0.00 33.67 2.82
1906 2098 1.667236 CATGCGTAGAAGGCATCCAA 58.333 50.000 4.23 0.00 45.38 3.53
1907 2099 0.815213 GCATGCGTAGAAGGCATCCA 60.815 55.000 0.00 0.00 45.38 3.41
1908 2100 0.815213 TGCATGCGTAGAAGGCATCC 60.815 55.000 14.09 0.00 45.38 3.51
1909 2101 1.016627 TTGCATGCGTAGAAGGCATC 58.983 50.000 14.09 1.93 45.38 3.91
1913 2105 1.812571 ACCTTTTGCATGCGTAGAAGG 59.187 47.619 26.34 26.34 39.55 3.46
1914 2106 3.559238 AACCTTTTGCATGCGTAGAAG 57.441 42.857 14.09 13.08 0.00 2.85
1915 2107 3.316588 TCAAACCTTTTGCATGCGTAGAA 59.683 39.130 14.09 0.00 0.00 2.10
1916 2108 2.881513 TCAAACCTTTTGCATGCGTAGA 59.118 40.909 14.09 3.75 0.00 2.59
1917 2109 3.236816 CTCAAACCTTTTGCATGCGTAG 58.763 45.455 14.09 9.68 0.00 3.51
1918 2110 2.030363 CCTCAAACCTTTTGCATGCGTA 60.030 45.455 14.09 0.00 0.00 4.42
1921 2113 1.799544 CCCTCAAACCTTTTGCATGC 58.200 50.000 11.82 11.82 0.00 4.06
1926 2118 2.227194 ACGTAGCCCTCAAACCTTTTG 58.773 47.619 0.00 0.00 0.00 2.44
1927 2119 2.621526 CAACGTAGCCCTCAAACCTTTT 59.378 45.455 0.00 0.00 0.00 2.27
1932 2124 1.886886 TTCCAACGTAGCCCTCAAAC 58.113 50.000 0.00 0.00 0.00 2.93
1941 2133 5.805994 GTCTCTTAGGTCATTTCCAACGTAG 59.194 44.000 0.00 0.00 0.00 3.51
1942 2134 5.620654 CGTCTCTTAGGTCATTTCCAACGTA 60.621 44.000 0.00 0.00 0.00 3.57
1943 2135 4.566987 GTCTCTTAGGTCATTTCCAACGT 58.433 43.478 0.00 0.00 0.00 3.99
1944 2136 3.612860 CGTCTCTTAGGTCATTTCCAACG 59.387 47.826 0.00 0.00 0.00 4.10
1945 2137 3.933332 CCGTCTCTTAGGTCATTTCCAAC 59.067 47.826 0.00 0.00 0.00 3.77
1946 2138 3.055385 CCCGTCTCTTAGGTCATTTCCAA 60.055 47.826 0.00 0.00 0.00 3.53
1948 2140 2.764572 TCCCGTCTCTTAGGTCATTTCC 59.235 50.000 0.00 0.00 0.00 3.13
1949 2141 4.182339 GTTCCCGTCTCTTAGGTCATTTC 58.818 47.826 0.00 0.00 0.00 2.17
1950 2142 3.581332 TGTTCCCGTCTCTTAGGTCATTT 59.419 43.478 0.00 0.00 0.00 2.32
1951 2143 3.170717 TGTTCCCGTCTCTTAGGTCATT 58.829 45.455 0.00 0.00 0.00 2.57
1952 2144 2.816411 TGTTCCCGTCTCTTAGGTCAT 58.184 47.619 0.00 0.00 0.00 3.06
1953 2145 2.297698 TGTTCCCGTCTCTTAGGTCA 57.702 50.000 0.00 0.00 0.00 4.02
1954 2146 3.025262 AGATGTTCCCGTCTCTTAGGTC 58.975 50.000 0.00 0.00 30.96 3.85
1955 2147 2.761208 CAGATGTTCCCGTCTCTTAGGT 59.239 50.000 0.00 0.00 34.64 3.08
1956 2148 3.024547 TCAGATGTTCCCGTCTCTTAGG 58.975 50.000 0.00 0.00 34.64 2.69
1965 2157 3.307059 GGGGAGAATATCAGATGTTCCCG 60.307 52.174 14.58 0.00 42.97 5.14
1973 2165 3.595190 TCACGAGGGGAGAATATCAGA 57.405 47.619 0.00 0.00 0.00 3.27
1990 2182 1.745653 GGTGCCTATGCTCCTTTTCAC 59.254 52.381 4.07 0.00 45.62 3.18
2047 2240 1.218316 GAGAACCGGCGAATCCTGT 59.782 57.895 9.30 0.00 33.34 4.00
2059 2252 4.072839 CCTTTGACTAAACTGGGAGAACC 58.927 47.826 0.00 0.00 40.81 3.62
2064 2257 3.117663 AGCAACCTTTGACTAAACTGGGA 60.118 43.478 0.00 0.00 0.00 4.37
2078 2271 4.473477 AGCGTATAGAGAAAGCAACCTT 57.527 40.909 0.00 0.00 0.00 3.50
2082 2275 3.628942 TCGGTAGCGTATAGAGAAAGCAA 59.371 43.478 14.79 0.00 0.00 3.91
2083 2276 3.003068 GTCGGTAGCGTATAGAGAAAGCA 59.997 47.826 14.79 0.00 0.00 3.91
2084 2277 3.553532 GTCGGTAGCGTATAGAGAAAGC 58.446 50.000 14.79 0.00 0.00 3.51
2085 2278 3.058363 GGGTCGGTAGCGTATAGAGAAAG 60.058 52.174 14.79 0.00 0.00 2.62
2086 2279 2.880890 GGGTCGGTAGCGTATAGAGAAA 59.119 50.000 14.79 0.00 0.00 2.52
2087 2280 2.105477 AGGGTCGGTAGCGTATAGAGAA 59.895 50.000 14.79 0.00 0.00 2.87
2088 2281 1.696336 AGGGTCGGTAGCGTATAGAGA 59.304 52.381 14.79 0.00 0.00 3.10
2089 2282 2.181954 AGGGTCGGTAGCGTATAGAG 57.818 55.000 14.79 0.00 0.00 2.43
2090 2283 2.105477 AGAAGGGTCGGTAGCGTATAGA 59.895 50.000 14.79 0.00 0.00 1.98
2093 2286 1.407979 CAAGAAGGGTCGGTAGCGTAT 59.592 52.381 14.79 0.00 0.00 3.06
2095 2288 0.896940 TCAAGAAGGGTCGGTAGCGT 60.897 55.000 14.79 0.00 0.00 5.07
2096 2289 0.245539 TTCAAGAAGGGTCGGTAGCG 59.754 55.000 8.29 8.29 0.00 4.26
2156 4326 9.625747 TCCATATGAAAGCACAATAATCAACTA 57.374 29.630 3.65 0.00 0.00 2.24
2183 4354 5.165961 TCCGTTTCTTGGATCTTCTGAAT 57.834 39.130 0.00 0.00 0.00 2.57
2193 4364 0.889186 GGCTGCTTCCGTTTCTTGGA 60.889 55.000 0.00 0.00 0.00 3.53
2217 4388 1.000274 GTCATGTCTTGTTGGCCAACC 60.000 52.381 38.90 26.21 40.46 3.77
2230 4401 1.594862 GATAGGCAACGCAGTCATGTC 59.405 52.381 0.00 0.00 45.00 3.06
2391 4574 9.167311 GCTATCCACTCAAAAAGAAGAAGATTA 57.833 33.333 0.00 0.00 0.00 1.75
2393 4576 7.336427 CAGCTATCCACTCAAAAAGAAGAAGAT 59.664 37.037 0.00 0.00 0.00 2.40
2394 4577 6.652481 CAGCTATCCACTCAAAAAGAAGAAGA 59.348 38.462 0.00 0.00 0.00 2.87
2395 4578 6.652481 TCAGCTATCCACTCAAAAAGAAGAAG 59.348 38.462 0.00 0.00 0.00 2.85
2397 4580 6.114187 TCAGCTATCCACTCAAAAAGAAGA 57.886 37.500 0.00 0.00 0.00 2.87
2400 4583 7.187824 AGTATCAGCTATCCACTCAAAAAGA 57.812 36.000 0.00 0.00 0.00 2.52
2401 4584 8.948631 TTAGTATCAGCTATCCACTCAAAAAG 57.051 34.615 0.00 0.00 0.00 2.27
2411 4599 7.118390 ACGCATTTCAATTAGTATCAGCTATCC 59.882 37.037 0.00 0.00 0.00 2.59
2433 4621 4.927425 GGTAACATGAGAAACTTCTACGCA 59.073 41.667 0.00 0.00 37.73 5.24
2447 4635 2.462723 TCATCGGTCCAGGTAACATGA 58.537 47.619 0.00 0.00 41.41 3.07
2499 4690 3.308530 GTTTCTTTGGACCGAGCAAATG 58.691 45.455 0.00 0.00 0.00 2.32
2501 4692 1.332375 CGTTTCTTTGGACCGAGCAAA 59.668 47.619 0.00 0.00 0.00 3.68
2505 4696 1.574702 GGCCGTTTCTTTGGACCGAG 61.575 60.000 0.00 0.00 0.00 4.63
2526 5615 4.424842 TCCAACATAAGAAAATGCCCCTT 58.575 39.130 0.00 0.00 0.00 3.95
2527 5616 4.059773 TCCAACATAAGAAAATGCCCCT 57.940 40.909 0.00 0.00 0.00 4.79
2528 5617 4.405358 TCATCCAACATAAGAAAATGCCCC 59.595 41.667 0.00 0.00 0.00 5.80
2529 5618 5.127682 ACTCATCCAACATAAGAAAATGCCC 59.872 40.000 0.00 0.00 0.00 5.36
2575 5707 0.679505 ATATATGGCACGTCGGCTGT 59.320 50.000 11.55 4.89 41.89 4.40
2743 5886 1.236628 GAGAGCTATGGCAAGCATGG 58.763 55.000 19.03 0.00 45.30 3.66
2780 5923 4.142752 GGGAAACGATTAACTAGCAACACC 60.143 45.833 0.00 0.00 0.00 4.16
2814 5957 2.642154 ACCGGTGTTGTGGTGATTTA 57.358 45.000 6.12 0.00 37.02 1.40
2854 5997 7.692460 TGGATATTGATGAATTACTCATGGC 57.308 36.000 0.00 0.00 45.23 4.40
2889 6032 1.445926 CCAAAATGAAAGGGCGCCG 60.446 57.895 22.54 1.42 0.00 6.46
3316 6483 4.276431 GGTACGTTTTGTCCCATGAAGAAA 59.724 41.667 0.00 0.00 0.00 2.52
3352 6519 0.592637 TACTACACCGGTCACGTGTG 59.407 55.000 16.51 8.54 42.78 3.82
3359 6526 1.153958 GCCACGTACTACACCGGTC 60.154 63.158 2.59 0.00 0.00 4.79
3524 7065 2.781923 AGCAAATGATGTTTTTGGGCC 58.218 42.857 0.00 0.00 35.18 5.80
3526 7067 6.857777 TTTGTAGCAAATGATGTTTTTGGG 57.142 33.333 0.00 0.00 35.18 4.12
3559 7789 3.500448 TTCCTACATCCAAACACAGCA 57.500 42.857 0.00 0.00 0.00 4.41
3586 7816 5.726980 TTCCAGTCCAATTCAATTCCAAG 57.273 39.130 0.00 0.00 0.00 3.61
3693 7980 6.349033 CGAACCCGAAAAACCTGAAATAGATT 60.349 38.462 0.00 0.00 38.22 2.40
3711 7998 1.376295 CCAACTAACCCCGAACCCG 60.376 63.158 0.00 0.00 0.00 5.28
3713 8000 0.035725 CTCCCAACTAACCCCGAACC 60.036 60.000 0.00 0.00 0.00 3.62
3731 8018 5.413833 TCTCGTAGTCGATAAAAACACCTCT 59.586 40.000 0.00 0.00 45.21 3.69
3736 8023 5.034554 ACGTCTCGTAGTCGATAAAAACA 57.965 39.130 8.03 0.00 45.21 2.83
3740 8027 3.928992 ACAGACGTCTCGTAGTCGATAAA 59.071 43.478 16.96 0.00 45.21 1.40
3741 8028 3.305361 CACAGACGTCTCGTAGTCGATAA 59.695 47.826 16.96 0.00 45.21 1.75
3742 8029 2.856557 CACAGACGTCTCGTAGTCGATA 59.143 50.000 16.96 0.00 45.21 2.92
3778 9452 2.225491 TGAACTGGCGCAACATCTTAAC 59.775 45.455 10.83 0.00 0.00 2.01
3794 9468 3.825328 AGCACCTCTGAAATGTTGAACT 58.175 40.909 0.00 0.00 0.00 3.01
3800 9475 4.721776 TCCCTATTAGCACCTCTGAAATGT 59.278 41.667 0.00 0.00 0.00 2.71
3804 9479 5.087323 CCTATCCCTATTAGCACCTCTGAA 58.913 45.833 0.00 0.00 0.00 3.02
3848 9523 4.850347 ACACGGATATACACTTAGCTCC 57.150 45.455 0.00 0.00 0.00 4.70
3877 9552 5.131784 TGAACATATGCATGCACATCCTAA 58.868 37.500 25.37 4.28 35.39 2.69
3917 9592 4.029861 GCCGCAAATACTCGTATATACACG 59.970 45.833 13.22 0.00 43.28 4.49
3919 9594 5.381174 AGCCGCAAATACTCGTATATACA 57.619 39.130 13.22 0.11 0.00 2.29
3921 9596 9.673454 CATTATAGCCGCAAATACTCGTATATA 57.327 33.333 0.00 0.00 0.00 0.86
3981 9656 4.764679 TTGCGTGCTTTCATAGTTTGAT 57.235 36.364 0.00 0.00 33.34 2.57
3982 9657 4.764679 ATTGCGTGCTTTCATAGTTTGA 57.235 36.364 0.00 0.00 0.00 2.69
3998 9673 4.234574 GAGGGTTGGTTTTAGAAATTGCG 58.765 43.478 0.00 0.00 0.00 4.85
4043 9718 2.042464 TGTCACAGAAAGAGAGTGGCT 58.958 47.619 0.00 0.00 38.61 4.75
4067 9742 6.004574 AGAAGTAAGATGTCCTTTGGGTTTC 58.995 40.000 0.00 0.00 36.34 2.78
4186 9866 9.442047 CCAATTACTACTTTCTCTGTCTCAAAT 57.558 33.333 0.00 0.00 0.00 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.