Multiple sequence alignment - TraesCS4A01G128300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G128300 chr4A 100.000 4480 0 0 1 4480 165357261 165361740 0.000000e+00 8274.0
1 TraesCS4A01G128300 chr4B 95.908 2664 74 10 1779 4431 386746785 386744146 0.000000e+00 4283.0
2 TraesCS4A01G128300 chr4B 93.687 1774 64 12 1 1758 386748660 386746919 0.000000e+00 2612.0
3 TraesCS4A01G128300 chr4B 91.463 164 13 1 3610 3772 28724304 28724141 1.620000e-54 224.0
4 TraesCS4A01G128300 chr4B 97.619 42 0 1 4439 4480 386744065 386744025 2.240000e-08 71.3
5 TraesCS4A01G128300 chr4D 96.544 2257 49 8 1779 4030 309698816 309696584 0.000000e+00 3709.0
6 TraesCS4A01G128300 chr4D 95.609 1526 42 5 1 1503 309701957 309700434 0.000000e+00 2423.0
7 TraesCS4A01G128300 chr4D 93.659 410 19 4 4029 4431 309696422 309696013 1.380000e-169 606.0
8 TraesCS4A01G128300 chr4D 95.539 269 8 2 1492 1758 309699216 309698950 1.150000e-115 427.0
9 TraesCS4A01G128300 chr4D 100.000 38 0 0 4443 4480 309696017 309695980 2.240000e-08 71.3
10 TraesCS4A01G128300 chr3B 92.216 167 12 1 3609 3774 552226406 552226572 7.490000e-58 235.0
11 TraesCS4A01G128300 chr5D 91.617 167 13 1 3608 3773 461072765 461072599 3.490000e-56 230.0
12 TraesCS4A01G128300 chr3A 90.588 170 14 2 3602 3770 238686203 238686371 1.620000e-54 224.0
13 TraesCS4A01G128300 chr3A 89.655 174 15 3 3609 3781 726769129 726768958 7.550000e-53 219.0
14 TraesCS4A01G128300 chr2D 91.411 163 13 1 3610 3771 572684769 572684607 5.830000e-54 222.0
15 TraesCS4A01G128300 chr6D 87.432 183 19 3 3591 3772 467802448 467802269 1.630000e-49 207.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G128300 chr4A 165357261 165361740 4479 False 8274.00 8274 100.0000 1 4480 1 chr4A.!!$F1 4479
1 TraesCS4A01G128300 chr4B 386744025 386748660 4635 True 2322.10 4283 95.7380 1 4480 3 chr4B.!!$R2 4479
2 TraesCS4A01G128300 chr4D 309695980 309701957 5977 True 1447.26 3709 96.2702 1 4480 5 chr4D.!!$R1 4479

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
731 734 1.288127 GTCGCCGTACTTGACCACT 59.712 57.895 0.00 0.0 0.00 4.00 F
1011 1019 0.035439 CCCAACCAATGTCGGCTACT 60.035 55.000 0.00 0.0 0.00 2.57 F
1060 1068 0.171903 ATGGCTCAAATCGTGCTTGC 59.828 50.000 0.00 0.0 34.47 4.01 F
1233 1241 0.602638 GTGTGACTGACGGATTGCCA 60.603 55.000 0.00 0.0 0.00 4.92 F
1686 2947 0.673644 ACCATCCCTGAAAAGCGACG 60.674 55.000 0.00 0.0 0.00 5.12 F
2153 3532 0.751643 AGTTTGCGCTGGACAACCTT 60.752 50.000 9.73 0.0 37.04 3.50 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2353 3732 0.385029 GCACAAACATCCAGCACACA 59.615 50.000 0.00 0.0 0.00 3.72 R
2354 3733 0.670162 AGCACAAACATCCAGCACAC 59.330 50.000 0.00 0.0 0.00 3.82 R
2355 3734 1.401761 AAGCACAAACATCCAGCACA 58.598 45.000 0.00 0.0 0.00 4.57 R
2430 3809 2.026542 TGCTTCCATCTCAGCATGTCTT 60.027 45.455 0.00 0.0 41.20 3.01 R
3449 4828 1.464376 CCACTCGGACAGGTCTGTGT 61.464 60.000 8.49 9.5 45.05 3.72 R
3482 4861 3.723260 TCATCAGCACGACTAACAAACA 58.277 40.909 0.00 0.0 0.00 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 63 6.600822 AGAGCAAAATACATATCAGTGTTGCT 59.399 34.615 10.51 10.51 42.17 3.91
95 98 2.283617 GCTAATCATGTCTGCACACTCG 59.716 50.000 0.00 0.00 34.48 4.18
191 194 1.889530 CGTCAGGAGGGAGTTCCACC 61.890 65.000 0.00 0.00 45.38 4.61
194 197 4.452733 GGAGGGAGTTCCACCGCG 62.453 72.222 0.00 0.00 36.55 6.46
731 734 1.288127 GTCGCCGTACTTGACCACT 59.712 57.895 0.00 0.00 0.00 4.00
922 930 1.521141 GGAGAAACCTAGACGCCCC 59.479 63.158 0.00 0.00 35.41 5.80
1011 1019 0.035439 CCCAACCAATGTCGGCTACT 60.035 55.000 0.00 0.00 0.00 2.57
1060 1068 0.171903 ATGGCTCAAATCGTGCTTGC 59.828 50.000 0.00 0.00 34.47 4.01
1106 1114 1.985473 ATTTCTGAACTGTGGCTGCA 58.015 45.000 0.50 0.00 0.00 4.41
1233 1241 0.602638 GTGTGACTGACGGATTGCCA 60.603 55.000 0.00 0.00 0.00 4.92
1235 1243 1.021390 GTGACTGACGGATTGCCAGG 61.021 60.000 0.00 0.00 32.52 4.45
1290 1320 7.105241 AGCCTGATTGACTGAAATTATTTCC 57.895 36.000 14.22 1.15 38.90 3.13
1293 1323 7.148018 GCCTGATTGACTGAAATTATTTCCTCA 60.148 37.037 14.22 11.65 38.90 3.86
1343 1373 3.324268 GCTTCATCCTCAGATCATCCTGA 59.676 47.826 0.00 0.00 40.57 3.86
1478 1508 5.464030 AAGAAAACTACCGAGCAGAGTTA 57.536 39.130 0.00 0.00 33.13 2.24
1527 2786 4.039124 TGCAGGGAGAAGAAAAACCATTTC 59.961 41.667 0.00 0.00 0.00 2.17
1686 2947 0.673644 ACCATCCCTGAAAAGCGACG 60.674 55.000 0.00 0.00 0.00 5.12
1860 3234 2.697229 TCATTTGTGTGGTTCATGCCAA 59.303 40.909 0.00 0.00 40.68 4.52
1877 3251 2.098770 GCCAAATCTGGTCTGCTTGATC 59.901 50.000 0.00 0.00 45.53 2.92
1997 3371 2.672874 TCATTGTGTTGTCTATGAGCGC 59.327 45.455 0.00 0.00 0.00 5.92
2039 3413 2.803492 GCTAGGCGAGTCGATCCAATTT 60.803 50.000 18.61 0.00 0.00 1.82
2044 3418 3.120991 GGCGAGTCGATCCAATTTTATCG 60.121 47.826 18.61 11.30 44.88 2.92
2051 3425 5.065474 GTCGATCCAATTTTATCGGTTTCCA 59.935 40.000 15.55 0.00 43.94 3.53
2153 3532 0.751643 AGTTTGCGCTGGACAACCTT 60.752 50.000 9.73 0.00 37.04 3.50
2254 3633 9.503427 GTTCCTAATGTGCTAATTGTATTGTTC 57.497 33.333 0.00 0.00 0.00 3.18
2353 3732 3.261897 CCCGGAATGTATGCTATTCTCCT 59.738 47.826 0.73 0.00 35.42 3.69
2354 3733 4.248859 CCGGAATGTATGCTATTCTCCTG 58.751 47.826 0.00 0.00 35.42 3.86
2355 3734 4.262635 CCGGAATGTATGCTATTCTCCTGT 60.263 45.833 0.00 0.00 35.42 4.00
2356 3735 4.687948 CGGAATGTATGCTATTCTCCTGTG 59.312 45.833 0.00 0.00 35.42 3.66
2357 3736 5.615289 GGAATGTATGCTATTCTCCTGTGT 58.385 41.667 0.00 0.00 35.42 3.72
2358 3737 5.468072 GGAATGTATGCTATTCTCCTGTGTG 59.532 44.000 0.00 0.00 35.42 3.82
2359 3738 3.797039 TGTATGCTATTCTCCTGTGTGC 58.203 45.455 0.00 0.00 0.00 4.57
2360 3739 3.452264 TGTATGCTATTCTCCTGTGTGCT 59.548 43.478 0.00 0.00 0.00 4.40
2361 3740 2.391616 TGCTATTCTCCTGTGTGCTG 57.608 50.000 0.00 0.00 0.00 4.41
2362 3741 1.065926 TGCTATTCTCCTGTGTGCTGG 60.066 52.381 0.00 0.00 35.32 4.85
2363 3742 1.208052 GCTATTCTCCTGTGTGCTGGA 59.792 52.381 0.00 0.00 39.90 3.86
2364 3743 2.158842 GCTATTCTCCTGTGTGCTGGAT 60.159 50.000 0.00 0.00 41.07 3.41
2365 3744 2.414994 ATTCTCCTGTGTGCTGGATG 57.585 50.000 0.00 0.00 41.07 3.51
2458 3837 2.223611 GCTGAGATGGAAGCAATCGATG 59.776 50.000 0.00 0.00 39.31 3.84
2595 3974 7.649057 CATTGTCGATACTAGGTCTGTGATTA 58.351 38.462 0.00 0.00 0.00 1.75
2780 4159 1.822990 AGCCTTTCGTCGGATGACTTA 59.177 47.619 0.00 0.00 43.21 2.24
2798 4177 5.152934 GACTTAACAGGGTGAGGGGATATA 58.847 45.833 0.00 0.00 0.00 0.86
2814 4193 5.452636 GGGGATATAAGCGGCAAATTGAAAA 60.453 40.000 1.45 0.00 0.00 2.29
3271 4650 5.813672 TGTTGCTTAAAGTTCGAACTGTACT 59.186 36.000 30.33 17.25 39.66 2.73
3339 4718 1.548719 TCCGGTCAGTGTACTTCCATG 59.451 52.381 0.00 0.00 0.00 3.66
3353 4732 9.817809 GTGTACTTCCATGTTCTATTAGAATCA 57.182 33.333 9.28 9.45 36.50 2.57
3449 4828 1.865788 GCATTTCAGCACCGAAGCCA 61.866 55.000 0.00 0.00 34.23 4.75
3482 4861 1.067283 CGAGTGGATCAGCAGTGACTT 60.067 52.381 0.00 0.00 34.75 3.01
3501 4880 4.127171 ACTTGTTTGTTAGTCGTGCTGAT 58.873 39.130 0.00 0.00 0.00 2.90
3522 4901 6.380414 TGATGAGGAAGATCTCAGGTATTCT 58.620 40.000 0.00 0.00 45.60 2.40
3639 5018 6.427242 CCTCCGTTTCTAAATATAAGCCCTTC 59.573 42.308 0.00 0.00 0.00 3.46
3726 5105 6.108687 TCATTTGCTCTGTATGTAGTCCTTG 58.891 40.000 0.00 0.00 0.00 3.61
3766 5145 5.455755 GGGCTTATATTTAGGAACGAAGGGT 60.456 44.000 0.00 0.00 0.00 4.34
3841 5220 7.346751 ACTGTACATCATTTGTTTTTGAGGT 57.653 32.000 0.00 0.00 39.82 3.85
4201 5744 4.022068 ACTTTGGCAGTACATTTCCATGTG 60.022 41.667 0.00 0.00 43.92 3.21
4202 5745 3.153369 TGGCAGTACATTTCCATGTGT 57.847 42.857 0.00 0.00 43.92 3.72
4245 5792 0.467290 TTGTTTGGCTCCTGACCACC 60.467 55.000 0.00 0.00 36.76 4.61
4246 5793 1.150536 GTTTGGCTCCTGACCACCA 59.849 57.895 0.00 0.00 36.76 4.17
4272 5819 2.099652 CTCTTGCTGTGGTGACCCGA 62.100 60.000 0.00 0.00 0.00 5.14
4280 5827 0.179073 GTGGTGACCCGATCAGATGG 60.179 60.000 0.00 0.00 38.28 3.51
4317 5864 3.470567 CGCGAACAGGACTGTCGC 61.471 66.667 25.19 25.19 46.31 5.19
4343 5890 1.306825 ATCCCACCAGCAGAGCTCT 60.307 57.895 11.45 11.45 36.40 4.09
4385 5934 1.450312 GACTGGTCATGCCCTTCCG 60.450 63.158 0.00 0.00 36.04 4.30
4394 5943 1.274703 ATGCCCTTCCGTGGAGACAT 61.275 55.000 0.00 0.00 46.14 3.06
4397 5946 0.905357 CCCTTCCGTGGAGACATTCT 59.095 55.000 0.00 0.00 46.14 2.40
4428 5977 1.600916 GTTGAACGCCCAAGCTCCT 60.601 57.895 0.00 0.00 36.60 3.69
4431 5980 1.600916 GAACGCCCAAGCTCCTGTT 60.601 57.895 0.00 0.00 36.60 3.16
4432 5981 1.578206 GAACGCCCAAGCTCCTGTTC 61.578 60.000 0.00 0.00 36.60 3.18
4433 5982 2.056906 AACGCCCAAGCTCCTGTTCT 62.057 55.000 0.00 0.00 36.60 3.01
4434 5983 1.302832 CGCCCAAGCTCCTGTTCTT 60.303 57.895 0.00 0.00 36.60 2.52
4436 5985 0.250901 GCCCAAGCTCCTGTTCTTGA 60.251 55.000 3.79 0.00 41.50 3.02
4439 5988 1.471684 CCAAGCTCCTGTTCTTGATGC 59.528 52.381 3.79 0.00 41.50 3.91
4440 5989 2.434428 CAAGCTCCTGTTCTTGATGCT 58.566 47.619 0.00 0.00 41.50 3.79
4441 5990 2.110901 AGCTCCTGTTCTTGATGCTG 57.889 50.000 0.00 0.00 0.00 4.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 63 2.027837 TGATTAGCTCAGCTGCAACTGA 60.028 45.455 18.37 18.37 44.32 3.41
95 98 7.337942 AGTGATGTTAAAGTCAAGGATGATTCC 59.662 37.037 0.00 0.00 42.96 3.01
159 162 0.105593 CCTGACGAGGTGATCCATGG 59.894 60.000 4.97 4.97 34.16 3.66
212 215 0.836606 TTGCTGACAAGGAGGTCACA 59.163 50.000 0.00 0.00 42.56 3.58
410 413 1.144057 GTCCGCCATGATCGAGGTT 59.856 57.895 8.56 0.00 0.00 3.50
731 734 3.760035 GAGGCGTGGAAGCTCGGA 61.760 66.667 0.00 0.00 37.29 4.55
809 812 2.434331 CAACAAAGCGGGGAGGGA 59.566 61.111 0.00 0.00 0.00 4.20
813 816 4.211330 TGGGCAACAAAGCGGGGA 62.211 61.111 0.00 0.00 39.74 4.81
884 887 9.508642 TTTCTCCTTATTTTTCCTTCTCTCTTC 57.491 33.333 0.00 0.00 0.00 2.87
919 927 2.266055 GAACTGCTCGAGTGGGGG 59.734 66.667 15.13 2.82 34.02 5.40
1011 1019 2.106074 CGCCAGCTCCATAAACGCA 61.106 57.895 0.00 0.00 0.00 5.24
1053 1061 0.169672 TCTACTCGTACGGCAAGCAC 59.830 55.000 16.52 0.00 0.00 4.40
1060 1068 1.202110 ACGCATGTTCTACTCGTACGG 60.202 52.381 16.52 8.79 0.00 4.02
1106 1114 3.064987 CTCCGGCGTCGAGGACAAT 62.065 63.158 12.93 0.00 39.00 2.71
1290 1320 7.778470 ACAAAAGTAGTTTCAGAGAGTTGAG 57.222 36.000 0.00 0.00 0.00 3.02
1318 1348 5.011840 CAGGATGATCTGAGGATGAAGCTAA 59.988 44.000 0.00 0.00 39.69 3.09
1343 1373 8.584157 TGTTGAACCATCTAAATTAAGCATGTT 58.416 29.630 0.00 0.00 0.00 2.71
1412 1442 3.967326 TGCTACACTCATTGGCCTATACT 59.033 43.478 3.32 0.00 0.00 2.12
1478 1508 3.312890 ACTAGCCTGAGATAATGCCAGT 58.687 45.455 0.00 0.00 0.00 4.00
1527 2786 0.107508 AGATTCGGAGCCACCACATG 60.108 55.000 0.00 0.00 38.90 3.21
1539 2798 2.892425 GTCCAGCGCCAGATTCGG 60.892 66.667 2.29 0.00 0.00 4.30
1666 2925 1.404986 CGTCGCTTTTCAGGGATGGTA 60.405 52.381 1.49 0.00 43.47 3.25
1686 2947 4.537433 CCTCTAGGGCGCCACTGC 62.537 72.222 30.85 11.04 0.00 4.40
1860 3234 2.092538 CCCTGATCAAGCAGACCAGATT 60.093 50.000 2.30 0.00 38.14 2.40
1896 3270 2.533266 AAAGATGTCACTGTCACGCT 57.467 45.000 0.00 0.00 0.00 5.07
2026 3400 5.296035 GGAAACCGATAAAATTGGATCGACT 59.704 40.000 18.88 6.89 46.19 4.18
2029 3403 5.493133 TGGAAACCGATAAAATTGGATCG 57.507 39.130 12.93 12.93 43.59 3.69
2044 3418 8.216387 GTTTATGATGGAAACCTGTTGGAAACC 61.216 40.741 0.00 0.00 37.12 3.27
2051 3425 5.393866 ACCAGTTTATGATGGAAACCTGTT 58.606 37.500 0.00 0.00 39.02 3.16
2153 3532 2.116238 GCATACCCTACAGGAACCTCA 58.884 52.381 0.00 0.00 39.89 3.86
2254 3633 2.634940 ACATCTATCTTGACGGGGATGG 59.365 50.000 0.00 0.00 36.05 3.51
2353 3732 0.385029 GCACAAACATCCAGCACACA 59.615 50.000 0.00 0.00 0.00 3.72
2354 3733 0.670162 AGCACAAACATCCAGCACAC 59.330 50.000 0.00 0.00 0.00 3.82
2355 3734 1.401761 AAGCACAAACATCCAGCACA 58.598 45.000 0.00 0.00 0.00 4.57
2356 3735 2.129607 CAAAGCACAAACATCCAGCAC 58.870 47.619 0.00 0.00 0.00 4.40
2357 3736 2.030371 TCAAAGCACAAACATCCAGCA 58.970 42.857 0.00 0.00 0.00 4.41
2358 3737 2.294233 TCTCAAAGCACAAACATCCAGC 59.706 45.455 0.00 0.00 0.00 4.85
2359 3738 3.316029 TGTCTCAAAGCACAAACATCCAG 59.684 43.478 0.00 0.00 0.00 3.86
2360 3739 3.286353 TGTCTCAAAGCACAAACATCCA 58.714 40.909 0.00 0.00 0.00 3.41
2361 3740 3.988379 TGTCTCAAAGCACAAACATCC 57.012 42.857 0.00 0.00 0.00 3.51
2362 3741 6.833342 AAAATGTCTCAAAGCACAAACATC 57.167 33.333 0.00 0.00 0.00 3.06
2363 3742 6.594937 ACAAAAATGTCTCAAAGCACAAACAT 59.405 30.769 0.00 0.00 0.00 2.71
2364 3743 5.931146 ACAAAAATGTCTCAAAGCACAAACA 59.069 32.000 0.00 0.00 0.00 2.83
2365 3744 6.128580 ACACAAAAATGTCTCAAAGCACAAAC 60.129 34.615 0.00 0.00 0.00 2.93
2430 3809 2.026542 TGCTTCCATCTCAGCATGTCTT 60.027 45.455 0.00 0.00 41.20 3.01
2595 3974 4.264352 TGGGGCAAACAGGAGAAATAGAAT 60.264 41.667 0.00 0.00 0.00 2.40
2612 3991 7.529555 AGAAATAGAATAATCAAGATGGGGCA 58.470 34.615 0.00 0.00 0.00 5.36
2688 4067 4.019591 ACACCCAAAGTATACTTCCCTGAC 60.020 45.833 18.28 0.00 34.61 3.51
2780 4159 2.711547 GCTTATATCCCCTCACCCTGTT 59.288 50.000 0.00 0.00 0.00 3.16
2798 4177 3.319122 AGAGAGTTTTCAATTTGCCGCTT 59.681 39.130 0.00 0.00 0.00 4.68
2814 4193 3.758755 TTGTTCACATGAGCAGAGAGT 57.241 42.857 0.00 0.00 36.65 3.24
2952 4331 8.045507 AGAAGAATGCATGAGAACTCAATAAGA 58.954 33.333 0.00 0.00 43.58 2.10
3271 4650 5.014755 ACCCCAACTCATATAAACAGAACCA 59.985 40.000 0.00 0.00 0.00 3.67
3339 4718 9.994432 CATTTGTGGTTCTGATTCTAATAGAAC 57.006 33.333 4.66 0.00 45.87 3.01
3353 4732 6.265196 TCTTTGATGCTTACATTTGTGGTTCT 59.735 34.615 0.00 0.00 36.35 3.01
3449 4828 1.464376 CCACTCGGACAGGTCTGTGT 61.464 60.000 8.49 9.50 45.05 3.72
3482 4861 3.723260 TCATCAGCACGACTAACAAACA 58.277 40.909 0.00 0.00 0.00 2.83
3501 4880 5.770919 TCAGAATACCTGAGATCTTCCTCA 58.229 41.667 0.00 0.00 46.38 3.86
3522 4901 5.046448 AGCTTGCCATCCATTGTTTAAATCA 60.046 36.000 0.00 0.00 0.00 2.57
3726 5105 8.926092 ATATAAGCCCTTTTAGAGATTCCAAC 57.074 34.615 0.00 0.00 0.00 3.77
3766 5145 3.882888 GCAAGCCCATATAGCAAACTACA 59.117 43.478 0.24 0.00 0.00 2.74
3841 5220 6.088016 AGATCTGCAAAATAACAACAGCAA 57.912 33.333 0.00 0.00 0.00 3.91
3944 5323 7.885399 TGTCTAGATGATAGATAGCTGCAACTA 59.115 37.037 1.02 0.00 0.00 2.24
4172 5714 4.766404 AATGTACTGCCAAAGTGTAAGC 57.234 40.909 0.00 0.00 40.26 3.09
4272 5819 2.110627 GCAGGCGAGCCATCTGAT 59.889 61.111 17.18 0.00 38.92 2.90
4307 5854 2.032681 GGCAAAGGCGACAGTCCT 59.967 61.111 0.00 0.00 42.47 3.85
4317 5864 2.353610 GCTGGTGGGATGGCAAAGG 61.354 63.158 0.00 0.00 0.00 3.11
4343 5890 2.736995 GGCGCGTGCAGTGACTAA 60.737 61.111 24.18 0.00 45.35 2.24
4370 5919 2.350895 CACGGAAGGGCATGACCA 59.649 61.111 22.78 0.00 42.05 4.02
4373 5922 1.612146 TCTCCACGGAAGGGCATGA 60.612 57.895 0.00 0.00 0.00 3.07
4385 5934 0.393537 CAGCCCCAGAATGTCTCCAC 60.394 60.000 0.00 0.00 0.00 4.02
4428 5977 2.857186 TACTGGCAGCATCAAGAACA 57.143 45.000 15.89 0.00 0.00 3.18
4431 5980 2.040278 ACCTTTACTGGCAGCATCAAGA 59.960 45.455 15.89 0.00 0.00 3.02
4432 5981 2.440409 ACCTTTACTGGCAGCATCAAG 58.560 47.619 15.89 10.99 0.00 3.02
4433 5982 2.557924 CAACCTTTACTGGCAGCATCAA 59.442 45.455 15.89 0.64 0.00 2.57
4434 5983 2.161855 CAACCTTTACTGGCAGCATCA 58.838 47.619 15.89 0.00 0.00 3.07
4436 5985 1.888512 CACAACCTTTACTGGCAGCAT 59.111 47.619 15.89 0.00 0.00 3.79
4439 5988 1.267806 CAGCACAACCTTTACTGGCAG 59.732 52.381 14.16 14.16 0.00 4.85
4440 5989 1.317613 CAGCACAACCTTTACTGGCA 58.682 50.000 0.00 0.00 0.00 4.92
4441 5990 0.598065 CCAGCACAACCTTTACTGGC 59.402 55.000 0.00 0.00 41.31 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.