Multiple sequence alignment - TraesCS4A01G127900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G127900 chr4A 100.000 3459 0 0 409 3867 164689027 164685569 0.000000e+00 6388.0
1 TraesCS4A01G127900 chr4A 90.689 537 31 8 3320 3846 495064505 495065032 0.000000e+00 697.0
2 TraesCS4A01G127900 chr4A 100.000 220 0 0 1 220 164689435 164689216 1.290000e-109 407.0
3 TraesCS4A01G127900 chr4A 92.308 221 12 4 3103 3319 231098367 231098148 3.750000e-80 309.0
4 TraesCS4A01G127900 chr4D 93.818 2103 83 18 891 2976 309943445 309945517 0.000000e+00 3120.0
5 TraesCS4A01G127900 chr4D 92.152 395 26 2 498 892 309928615 309929004 1.570000e-153 553.0
6 TraesCS4A01G127900 chr4B 92.037 2135 86 31 881 2976 387401416 387403505 0.000000e+00 2924.0
7 TraesCS4A01G127900 chr4B 91.403 442 36 2 409 850 387398006 387398445 4.270000e-169 604.0
8 TraesCS4A01G127900 chr4B 95.475 221 9 1 1 220 387397670 387397890 6.150000e-93 351.0
9 TraesCS4A01G127900 chr4B 78.400 125 25 2 1381 1504 664051949 664052072 3.200000e-11 80.5
10 TraesCS4A01G127900 chr2A 94.909 550 22 4 3320 3867 720331321 720330776 0.000000e+00 856.0
11 TraesCS4A01G127900 chr2A 93.636 550 29 3 3321 3867 773704439 773703893 0.000000e+00 817.0
12 TraesCS4A01G127900 chr2A 92.754 552 31 6 3321 3867 720520155 720519608 0.000000e+00 789.0
13 TraesCS4A01G127900 chr5B 92.407 540 31 3 3318 3850 291512437 291511901 0.000000e+00 761.0
14 TraesCS4A01G127900 chr5B 94.580 369 15 1 3319 3682 18302697 18302329 2.020000e-157 566.0
15 TraesCS4A01G127900 chr5B 94.038 369 17 1 3319 3682 18273631 18273263 4.370000e-154 555.0
16 TraesCS4A01G127900 chr1B 90.676 547 25 6 3324 3847 584763607 584764150 0.000000e+00 704.0
17 TraesCS4A01G127900 chr1B 92.627 217 13 2 3103 3319 526351360 526351147 3.750000e-80 309.0
18 TraesCS4A01G127900 chr3A 91.011 534 26 6 3323 3847 729614308 729614828 0.000000e+00 701.0
19 TraesCS4A01G127900 chr3A 93.897 213 8 4 3103 3311 479171054 479171265 2.240000e-82 316.0
20 TraesCS4A01G127900 chr5A 95.011 441 18 3 3428 3867 568055698 568055261 0.000000e+00 689.0
21 TraesCS4A01G127900 chr5A 78.571 126 23 3 1381 1504 703963492 703963369 3.200000e-11 80.5
22 TraesCS4A01G127900 chr5A 78.571 126 23 3 1381 1504 703969338 703969215 3.200000e-11 80.5
23 TraesCS4A01G127900 chr5A 78.571 126 23 3 1381 1504 704099657 704099534 3.200000e-11 80.5
24 TraesCS4A01G127900 chr6A 90.335 538 33 6 3320 3847 219540437 219540965 0.000000e+00 688.0
25 TraesCS4A01G127900 chr3D 93.827 243 12 3 3320 3560 83825565 83825324 2.840000e-96 363.0
26 TraesCS4A01G127900 chr3D 92.237 219 13 2 3103 3319 479918361 479918145 1.350000e-79 307.0
27 TraesCS4A01G127900 chr3D 91.304 230 12 5 3098 3319 593714414 593714185 1.350000e-79 307.0
28 TraesCS4A01G127900 chr2D 92.276 246 14 4 3318 3560 43108885 43109128 1.030000e-90 344.0
29 TraesCS4A01G127900 chr2D 78.109 201 40 4 1314 1512 59724627 59724825 1.460000e-24 124.0
30 TraesCS4A01G127900 chr2D 78.090 178 33 6 1321 1495 55630007 55629833 1.470000e-19 108.0
31 TraesCS4A01G127900 chr7D 93.363 226 13 1 3096 3319 75159086 75159311 2.230000e-87 333.0
32 TraesCS4A01G127900 chr1A 92.342 222 8 7 3103 3319 68303833 68303616 1.350000e-79 307.0
33 TraesCS4A01G127900 chr7A 92.166 217 13 2 3103 3319 115799734 115799522 1.750000e-78 303.0
34 TraesCS4A01G127900 chr6B 91.556 225 11 6 3099 3319 179995271 179995051 1.750000e-78 303.0
35 TraesCS4A01G127900 chr2B 78.756 193 37 4 1314 1504 93408829 93409019 4.060000e-25 126.0
36 TraesCS4A01G127900 chr2B 88.333 60 7 0 1165 1224 94090375 94090316 5.360000e-09 73.1
37 TraesCS4A01G127900 chrUn 80.000 125 23 2 1381 1504 109056990 109057113 1.480000e-14 91.6
38 TraesCS4A01G127900 chr7B 86.585 82 11 0 605 686 12529818 12529737 1.480000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G127900 chr4A 164685569 164689435 3866 True 3397.5 6388 100.000000 1 3867 2 chr4A.!!$R2 3866
1 TraesCS4A01G127900 chr4A 495064505 495065032 527 False 697.0 697 90.689000 3320 3846 1 chr4A.!!$F1 526
2 TraesCS4A01G127900 chr4D 309943445 309945517 2072 False 3120.0 3120 93.818000 891 2976 1 chr4D.!!$F2 2085
3 TraesCS4A01G127900 chr4B 387397670 387403505 5835 False 1293.0 2924 92.971667 1 2976 3 chr4B.!!$F2 2975
4 TraesCS4A01G127900 chr2A 720330776 720331321 545 True 856.0 856 94.909000 3320 3867 1 chr2A.!!$R1 547
5 TraesCS4A01G127900 chr2A 773703893 773704439 546 True 817.0 817 93.636000 3321 3867 1 chr2A.!!$R3 546
6 TraesCS4A01G127900 chr2A 720519608 720520155 547 True 789.0 789 92.754000 3321 3867 1 chr2A.!!$R2 546
7 TraesCS4A01G127900 chr5B 291511901 291512437 536 True 761.0 761 92.407000 3318 3850 1 chr5B.!!$R3 532
8 TraesCS4A01G127900 chr1B 584763607 584764150 543 False 704.0 704 90.676000 3324 3847 1 chr1B.!!$F1 523
9 TraesCS4A01G127900 chr3A 729614308 729614828 520 False 701.0 701 91.011000 3323 3847 1 chr3A.!!$F2 524
10 TraesCS4A01G127900 chr6A 219540437 219540965 528 False 688.0 688 90.335000 3320 3847 1 chr6A.!!$F1 527


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
636 637 0.382158 TCTTAGCGATGCAGAGACCG 59.618 55.0 0.00 0.0 0.00 4.79 F
637 638 0.596083 CTTAGCGATGCAGAGACCGG 60.596 60.0 0.00 0.0 0.00 5.28 F
1561 4505 0.109272 TACCTTCTCGCGCTTGAGTG 60.109 55.0 5.56 3.8 37.28 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1541 4485 0.109226 ACTCAAGCGCGAGAAGGTAC 60.109 55.0 12.10 0.0 36.47 3.34 R
1919 4881 0.463654 TGTATGCCGGACATGCTTCC 60.464 55.0 20.87 0.0 41.56 3.46 R
3034 6013 0.036765 GTGGATGCGGTTGTACTGGA 60.037 55.0 0.00 0.0 0.00 3.86 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 81 5.541845 TCAGGATCACTACAAAAGACACAG 58.458 41.667 0.00 0.00 0.00 3.66
87 88 4.516698 CACTACAAAAGACACAGGAAGCAT 59.483 41.667 0.00 0.00 0.00 3.79
99 100 4.510711 CACAGGAAGCATCATCTACATGTC 59.489 45.833 0.00 0.00 0.00 3.06
104 105 4.870123 AGCATCATCTACATGTCTCCTC 57.130 45.455 0.00 0.00 0.00 3.71
130 131 1.141185 AGGTTATCCCTAGCCAAGCC 58.859 55.000 0.00 0.00 43.87 4.35
471 472 4.067192 GCTCATCCAAGGTGCAAAATTTT 58.933 39.130 0.00 0.00 0.00 1.82
523 524 7.254829 CCATCTTGTTGCTATCAGATCTCAAAG 60.255 40.741 0.00 0.00 0.00 2.77
539 540 4.507335 TCTCAAAGAGATCCCAAAACAGGG 60.507 45.833 0.00 0.00 40.96 4.45
557 558 4.089361 CAGGGTTTTAAGGGAGCATTCTT 58.911 43.478 0.00 0.00 0.00 2.52
580 581 4.065321 TGCCGATTTGTTGGTTTTCATT 57.935 36.364 0.00 0.00 0.00 2.57
598 599 8.925700 GTTTTCATTTTTCTTTTGTCAGACTGT 58.074 29.630 1.59 0.00 0.00 3.55
604 605 5.975693 TTCTTTTGTCAGACTGTTGGTTT 57.024 34.783 1.59 0.00 0.00 3.27
636 637 0.382158 TCTTAGCGATGCAGAGACCG 59.618 55.000 0.00 0.00 0.00 4.79
637 638 0.596083 CTTAGCGATGCAGAGACCGG 60.596 60.000 0.00 0.00 0.00 5.28
644 645 1.480212 ATGCAGAGACCGGGTGTTGA 61.480 55.000 3.30 0.00 0.00 3.18
666 667 9.539825 GTTGATCATCATGAGTTGTATCTACTT 57.460 33.333 0.09 0.00 0.00 2.24
675 676 5.105187 TGAGTTGTATCTACTTGATGCTGCT 60.105 40.000 0.00 0.00 38.39 4.24
676 677 5.114780 AGTTGTATCTACTTGATGCTGCTG 58.885 41.667 0.00 0.00 38.39 4.41
680 681 5.582269 TGTATCTACTTGATGCTGCTGTTTC 59.418 40.000 0.00 0.00 38.39 2.78
700 701 7.011382 TGTTTCAGTTAATAAAAGGGCCCTTA 58.989 34.615 37.33 23.56 34.84 2.69
733 734 8.106247 AGAAAATGTGTGTTATGTTTATCCGT 57.894 30.769 0.00 0.00 0.00 4.69
747 748 5.419155 TGTTTATCCGTATTGCCCAAAATGA 59.581 36.000 0.00 0.00 0.00 2.57
748 749 6.097554 TGTTTATCCGTATTGCCCAAAATGAT 59.902 34.615 0.00 0.00 0.00 2.45
749 750 6.723298 TTATCCGTATTGCCCAAAATGATT 57.277 33.333 0.00 0.00 0.00 2.57
780 781 3.799420 GCCGTGTTGCATTCTTTTTAACA 59.201 39.130 0.00 0.00 0.00 2.41
784 785 7.237173 CCGTGTTGCATTCTTTTTAACAAAAA 58.763 30.769 0.00 0.00 37.99 1.94
814 815 2.415168 ACGTGTATCCGCACTGAAAATG 59.585 45.455 0.00 0.00 37.24 2.32
823 824 2.584791 GCACTGAAAATGCTTACACCG 58.415 47.619 0.00 0.00 40.08 4.94
830 831 6.207810 ACTGAAAATGCTTACACCGGAAATAA 59.792 34.615 9.46 2.33 0.00 1.40
835 836 3.625764 TGCTTACACCGGAAATAATCTGC 59.374 43.478 9.46 4.40 32.64 4.26
839 840 6.149474 GCTTACACCGGAAATAATCTGCATAT 59.851 38.462 9.46 0.00 32.64 1.78
843 844 8.718102 ACACCGGAAATAATCTGCATATATAC 57.282 34.615 9.46 0.00 32.64 1.47
875 876 9.474313 AAATAAATGATAAAGTCCTAACCTGCA 57.526 29.630 0.00 0.00 0.00 4.41
877 878 5.957771 ATGATAAAGTCCTAACCTGCAGA 57.042 39.130 17.39 0.00 0.00 4.26
878 879 5.086104 TGATAAAGTCCTAACCTGCAGAC 57.914 43.478 17.39 4.10 0.00 3.51
879 880 4.530553 TGATAAAGTCCTAACCTGCAGACA 59.469 41.667 17.39 0.00 0.00 3.41
955 3897 4.148825 GACTGCATCGCGGAGGGT 62.149 66.667 6.13 0.00 42.82 4.34
1240 4182 2.765699 AGTCCTCAAGATCTTCCTCTGC 59.234 50.000 4.57 0.00 0.00 4.26
1298 4241 2.492881 TGTTTGATGGTGGATGCATGTC 59.507 45.455 2.46 0.00 0.00 3.06
1301 4244 1.282738 TGATGGTGGATGCATGTCTGT 59.717 47.619 2.46 0.00 0.00 3.41
1302 4245 2.504996 TGATGGTGGATGCATGTCTGTA 59.495 45.455 2.46 0.00 0.00 2.74
1303 4246 2.401583 TGGTGGATGCATGTCTGTAC 57.598 50.000 2.46 0.00 0.00 2.90
1304 4247 1.065491 TGGTGGATGCATGTCTGTACC 60.065 52.381 2.46 3.89 0.00 3.34
1365 4308 2.046892 CCCAGCTTCACCGGTGAG 60.047 66.667 34.25 27.46 41.13 3.51
1537 4481 7.711339 GCTAAAGCCTAAATTTACAGCTCTCTA 59.289 37.037 15.11 8.76 32.19 2.43
1541 4485 9.771534 AAGCCTAAATTTACAGCTCTCTATTAG 57.228 33.333 15.11 0.00 32.19 1.73
1561 4505 0.109272 TACCTTCTCGCGCTTGAGTG 60.109 55.000 5.56 3.80 37.28 3.51
1562 4506 1.080501 CCTTCTCGCGCTTGAGTGA 60.081 57.895 5.56 0.00 37.28 3.41
1563 4507 0.667487 CCTTCTCGCGCTTGAGTGAA 60.667 55.000 5.56 1.56 37.28 3.18
1564 4508 1.139989 CTTCTCGCGCTTGAGTGAAA 58.860 50.000 5.56 0.00 37.28 2.69
1585 4529 3.267483 AGAAAATACCGGTCGTTCCATG 58.733 45.455 12.40 0.00 35.57 3.66
1619 4563 6.402550 GGAAGTACATGTAGCAAGTGACAATG 60.403 42.308 5.62 0.00 0.00 2.82
1846 4808 3.645212 ACACAGCTGATAGCCATGATACT 59.355 43.478 23.35 0.00 43.77 2.12
1847 4809 4.835056 ACACAGCTGATAGCCATGATACTA 59.165 41.667 23.35 0.00 43.77 1.82
1848 4810 5.167121 CACAGCTGATAGCCATGATACTAC 58.833 45.833 23.35 0.00 43.77 2.73
1849 4811 5.047448 CACAGCTGATAGCCATGATACTACT 60.047 44.000 23.35 0.00 43.77 2.57
1850 4812 6.151817 CACAGCTGATAGCCATGATACTACTA 59.848 42.308 23.35 0.00 43.77 1.82
1851 4813 6.376864 ACAGCTGATAGCCATGATACTACTAG 59.623 42.308 23.35 0.00 43.77 2.57
1893 4855 6.490566 TGCATGCATTGATAGATCACATAC 57.509 37.500 18.46 0.00 36.36 2.39
1904 4866 7.710896 TGATAGATCACATACAAGAGTCAGTG 58.289 38.462 0.00 0.00 35.30 3.66
1919 4881 4.887748 AGTCAGTGACACTGTTAGATTGG 58.112 43.478 29.87 6.48 46.03 3.16
1930 4892 3.620488 TGTTAGATTGGGAAGCATGTCC 58.380 45.455 0.00 0.00 36.90 4.02
1946 4915 0.802494 GTCCGGCATACAACCAAGTG 59.198 55.000 0.00 0.00 0.00 3.16
1947 4916 0.958382 TCCGGCATACAACCAAGTGC 60.958 55.000 0.00 0.00 36.88 4.40
1948 4917 1.134487 CGGCATACAACCAAGTGCG 59.866 57.895 0.00 0.00 38.43 5.34
1949 4918 1.154035 GGCATACAACCAAGTGCGC 60.154 57.895 0.00 0.00 38.43 6.09
1950 4919 1.586154 GGCATACAACCAAGTGCGCT 61.586 55.000 9.73 0.00 38.43 5.92
1974 4943 2.964740 CACGTATGCATGGCTAGCTAT 58.035 47.619 15.72 11.85 0.00 2.97
1975 4944 4.110036 CACGTATGCATGGCTAGCTATA 57.890 45.455 13.80 0.00 0.00 1.31
1976 4945 3.859961 CACGTATGCATGGCTAGCTATAC 59.140 47.826 13.80 8.87 0.00 1.47
1977 4946 3.108881 CGTATGCATGGCTAGCTATACG 58.891 50.000 13.80 15.33 39.95 3.06
1979 4948 4.498177 CGTATGCATGGCTAGCTATACGAT 60.498 45.833 22.38 13.39 43.60 3.73
2045 5014 1.294659 CTTGGCTGCTTCGTCTGGTC 61.295 60.000 0.00 0.00 0.00 4.02
2087 5056 2.417933 GAGTTGTGCATCCATCACTGAC 59.582 50.000 0.00 0.00 35.58 3.51
2099 5068 0.391130 TCACTGACCATAGCAACGGC 60.391 55.000 0.00 0.00 41.61 5.68
2100 5069 1.078426 ACTGACCATAGCAACGGCC 60.078 57.895 0.00 0.00 42.56 6.13
2101 5070 1.078497 CTGACCATAGCAACGGCCA 60.078 57.895 2.24 0.00 42.56 5.36
2104 5073 0.676782 GACCATAGCAACGGCCAACT 60.677 55.000 2.24 0.00 42.56 3.16
2139 5108 1.678970 GCCTGCGTCCCCTGAATTT 60.679 57.895 0.00 0.00 0.00 1.82
2156 5125 6.260714 CCTGAATTTAACATGGTGATCGATGA 59.739 38.462 0.54 0.00 34.61 2.92
2179 5148 2.031163 GTCCCTGCGCTTGTCACT 59.969 61.111 9.73 0.00 0.00 3.41
2301 5270 5.191727 ACCTCATAATTCATTCACCACCA 57.808 39.130 0.00 0.00 0.00 4.17
2305 5274 4.341806 TCATAATTCATTCACCACCATGCC 59.658 41.667 0.00 0.00 0.00 4.40
2347 5316 3.507233 AGAAAATCACCACGCAATCATGT 59.493 39.130 0.00 0.00 0.00 3.21
2348 5317 3.940209 AAATCACCACGCAATCATGTT 57.060 38.095 0.00 0.00 0.00 2.71
2368 5343 6.187125 TGTTCTCTATCACAACGTACTACC 57.813 41.667 0.00 0.00 0.00 3.18
2369 5344 5.124457 TGTTCTCTATCACAACGTACTACCC 59.876 44.000 0.00 0.00 0.00 3.69
2370 5345 4.202441 TCTCTATCACAACGTACTACCCC 58.798 47.826 0.00 0.00 0.00 4.95
2673 5648 0.683504 TACTTCTCCGGCCTCCTCAC 60.684 60.000 0.00 0.00 0.00 3.51
2678 5653 2.445845 CCGGCCTCCTCACCCATA 60.446 66.667 0.00 0.00 0.00 2.74
2679 5654 1.843376 CCGGCCTCCTCACCCATAT 60.843 63.158 0.00 0.00 0.00 1.78
2867 5842 1.988834 CTGCCGGGCGGTAAATTGAC 61.989 60.000 19.95 0.00 37.65 3.18
2910 5885 2.524569 ACAAAATGAACTTTGGCCGG 57.475 45.000 0.00 0.00 40.03 6.13
2912 5887 2.169561 ACAAAATGAACTTTGGCCGGTT 59.830 40.909 1.90 8.04 40.03 4.44
2949 5928 3.846360 AGACTGCGTCTTTATGTACACC 58.154 45.455 0.00 0.00 40.28 4.16
2952 5931 4.181578 ACTGCGTCTTTATGTACACCATC 58.818 43.478 0.00 0.00 34.86 3.51
2956 5935 5.126545 TGCGTCTTTATGTACACCATCTACT 59.873 40.000 0.00 0.00 34.86 2.57
2957 5936 5.459107 GCGTCTTTATGTACACCATCTACTG 59.541 44.000 0.00 0.00 34.86 2.74
2980 5959 9.382275 ACTGGAATTAAATGCATTTGTTAATCC 57.618 29.630 30.43 26.11 29.37 3.01
2981 5960 9.603921 CTGGAATTAAATGCATTTGTTAATCCT 57.396 29.630 30.43 11.30 29.37 3.24
2990 5969 8.652810 ATGCATTTGTTAATCCTAATTCTTGC 57.347 30.769 0.00 0.00 0.00 4.01
2991 5970 6.751425 TGCATTTGTTAATCCTAATTCTTGCG 59.249 34.615 0.00 0.00 0.00 4.85
2992 5971 6.291796 GCATTTGTTAATCCTAATTCTTGCGC 60.292 38.462 0.00 0.00 0.00 6.09
2993 5972 5.888691 TTGTTAATCCTAATTCTTGCGCA 57.111 34.783 5.66 5.66 0.00 6.09
2994 5973 5.229921 TGTTAATCCTAATTCTTGCGCAC 57.770 39.130 11.12 0.00 0.00 5.34
2995 5974 4.697828 TGTTAATCCTAATTCTTGCGCACA 59.302 37.500 11.12 0.00 0.00 4.57
2996 5975 5.182190 TGTTAATCCTAATTCTTGCGCACAA 59.818 36.000 11.12 6.49 0.00 3.33
3006 5985 3.542712 CTTGCGCACAAGTATCAAGTT 57.457 42.857 11.12 0.00 46.84 2.66
3007 5986 4.661993 CTTGCGCACAAGTATCAAGTTA 57.338 40.909 11.12 0.00 46.84 2.24
3008 5987 5.029650 CTTGCGCACAAGTATCAAGTTAA 57.970 39.130 11.12 0.00 46.84 2.01
3009 5988 5.621197 TTGCGCACAAGTATCAAGTTAAT 57.379 34.783 11.12 0.00 0.00 1.40
3010 5989 5.216566 TGCGCACAAGTATCAAGTTAATC 57.783 39.130 5.66 0.00 0.00 1.75
3011 5990 4.094294 TGCGCACAAGTATCAAGTTAATCC 59.906 41.667 5.66 0.00 0.00 3.01
3012 5991 4.332819 GCGCACAAGTATCAAGTTAATCCT 59.667 41.667 0.30 0.00 0.00 3.24
3013 5992 5.522460 GCGCACAAGTATCAAGTTAATCCTA 59.478 40.000 0.30 0.00 0.00 2.94
3014 5993 6.036735 GCGCACAAGTATCAAGTTAATCCTAA 59.963 38.462 0.30 0.00 0.00 2.69
3015 5994 7.254795 GCGCACAAGTATCAAGTTAATCCTAAT 60.255 37.037 0.30 0.00 0.00 1.73
3016 5995 8.612619 CGCACAAGTATCAAGTTAATCCTAATT 58.387 33.333 0.00 0.00 0.00 1.40
3017 5996 9.937175 GCACAAGTATCAAGTTAATCCTAATTC 57.063 33.333 0.00 0.00 0.00 2.17
3035 6014 9.705290 TCCTAATTCTTTTTACAAGCCAAATTC 57.295 29.630 0.00 0.00 0.00 2.17
3036 6015 8.935844 CCTAATTCTTTTTACAAGCCAAATTCC 58.064 33.333 0.00 0.00 0.00 3.01
3037 6016 9.487790 CTAATTCTTTTTACAAGCCAAATTCCA 57.512 29.630 0.00 0.00 0.00 3.53
3038 6017 7.967890 ATTCTTTTTACAAGCCAAATTCCAG 57.032 32.000 0.00 0.00 0.00 3.86
3039 6018 6.478512 TCTTTTTACAAGCCAAATTCCAGT 57.521 33.333 0.00 0.00 0.00 4.00
3040 6019 7.589958 TCTTTTTACAAGCCAAATTCCAGTA 57.410 32.000 0.00 0.00 0.00 2.74
3041 6020 7.430441 TCTTTTTACAAGCCAAATTCCAGTAC 58.570 34.615 0.00 0.00 0.00 2.73
3042 6021 6.716934 TTTTACAAGCCAAATTCCAGTACA 57.283 33.333 0.00 0.00 0.00 2.90
3043 6022 6.716934 TTTACAAGCCAAATTCCAGTACAA 57.283 33.333 0.00 0.00 0.00 2.41
3044 6023 4.584327 ACAAGCCAAATTCCAGTACAAC 57.416 40.909 0.00 0.00 0.00 3.32
3045 6024 3.320826 ACAAGCCAAATTCCAGTACAACC 59.679 43.478 0.00 0.00 0.00 3.77
3046 6025 2.159382 AGCCAAATTCCAGTACAACCG 58.841 47.619 0.00 0.00 0.00 4.44
3047 6026 1.402325 GCCAAATTCCAGTACAACCGC 60.402 52.381 0.00 0.00 0.00 5.68
3048 6027 1.883275 CCAAATTCCAGTACAACCGCA 59.117 47.619 0.00 0.00 0.00 5.69
3049 6028 2.491693 CCAAATTCCAGTACAACCGCAT 59.508 45.455 0.00 0.00 0.00 4.73
3050 6029 3.427503 CCAAATTCCAGTACAACCGCATC 60.428 47.826 0.00 0.00 0.00 3.91
3051 6030 2.038387 ATTCCAGTACAACCGCATCC 57.962 50.000 0.00 0.00 0.00 3.51
3052 6031 0.687920 TTCCAGTACAACCGCATCCA 59.312 50.000 0.00 0.00 0.00 3.41
3053 6032 0.036765 TCCAGTACAACCGCATCCAC 60.037 55.000 0.00 0.00 0.00 4.02
3054 6033 0.321210 CCAGTACAACCGCATCCACA 60.321 55.000 0.00 0.00 0.00 4.17
3055 6034 1.678728 CCAGTACAACCGCATCCACAT 60.679 52.381 0.00 0.00 0.00 3.21
3056 6035 1.398041 CAGTACAACCGCATCCACATG 59.602 52.381 0.00 0.00 0.00 3.21
3057 6036 0.732571 GTACAACCGCATCCACATGG 59.267 55.000 0.00 0.00 0.00 3.66
3069 6048 3.266510 TCCACATGGAACTACTGCATC 57.733 47.619 0.00 0.00 42.18 3.91
3070 6049 2.840038 TCCACATGGAACTACTGCATCT 59.160 45.455 0.00 0.00 42.18 2.90
3071 6050 4.030216 TCCACATGGAACTACTGCATCTA 58.970 43.478 0.00 0.00 42.18 1.98
3072 6051 4.122776 CCACATGGAACTACTGCATCTAC 58.877 47.826 0.00 0.00 32.99 2.59
3073 6052 3.798878 CACATGGAACTACTGCATCTACG 59.201 47.826 0.00 0.00 32.99 3.51
3074 6053 3.181475 ACATGGAACTACTGCATCTACGG 60.181 47.826 0.00 0.00 32.99 4.02
3075 6054 2.730382 TGGAACTACTGCATCTACGGA 58.270 47.619 0.00 0.00 0.00 4.69
3076 6055 2.426024 TGGAACTACTGCATCTACGGAC 59.574 50.000 0.00 0.00 0.00 4.79
3077 6056 2.541178 GGAACTACTGCATCTACGGACG 60.541 54.545 0.00 0.00 0.00 4.79
3078 6057 1.022735 ACTACTGCATCTACGGACGG 58.977 55.000 0.00 0.00 0.00 4.79
3079 6058 1.022735 CTACTGCATCTACGGACGGT 58.977 55.000 0.00 0.00 0.00 4.83
3080 6059 1.002684 CTACTGCATCTACGGACGGTC 60.003 57.143 0.00 0.00 0.00 4.79
3081 6060 0.680280 ACTGCATCTACGGACGGTCT 60.680 55.000 8.23 0.00 0.00 3.85
3082 6061 0.248661 CTGCATCTACGGACGGTCTG 60.249 60.000 15.28 15.28 0.00 3.51
3083 6062 1.065928 GCATCTACGGACGGTCTGG 59.934 63.158 20.38 9.61 0.00 3.86
3084 6063 1.381928 GCATCTACGGACGGTCTGGA 61.382 60.000 20.38 11.80 0.00 3.86
3085 6064 1.100510 CATCTACGGACGGTCTGGAA 58.899 55.000 20.38 7.84 0.00 3.53
3086 6065 1.065701 CATCTACGGACGGTCTGGAAG 59.934 57.143 20.38 16.15 0.00 3.46
3087 6066 0.037303 TCTACGGACGGTCTGGAAGT 59.963 55.000 20.38 9.60 33.76 3.01
3088 6067 0.170561 CTACGGACGGTCTGGAAGTG 59.829 60.000 20.38 0.00 33.76 3.16
3089 6068 0.250858 TACGGACGGTCTGGAAGTGA 60.251 55.000 20.38 0.00 33.76 3.41
3090 6069 1.213013 CGGACGGTCTGGAAGTGAG 59.787 63.158 9.16 0.00 33.76 3.51
3091 6070 1.241990 CGGACGGTCTGGAAGTGAGA 61.242 60.000 9.16 0.00 33.76 3.27
3092 6071 0.244178 GGACGGTCTGGAAGTGAGAC 59.756 60.000 8.23 0.00 39.38 3.36
3093 6072 0.959553 GACGGTCTGGAAGTGAGACA 59.040 55.000 0.00 0.00 41.50 3.41
3094 6073 0.962489 ACGGTCTGGAAGTGAGACAG 59.038 55.000 0.00 0.00 41.50 3.51
3095 6074 0.962489 CGGTCTGGAAGTGAGACAGT 59.038 55.000 0.00 0.00 41.50 3.55
3096 6075 1.336332 CGGTCTGGAAGTGAGACAGTG 60.336 57.143 0.00 0.00 41.50 3.66
3097 6076 1.689273 GGTCTGGAAGTGAGACAGTGT 59.311 52.381 0.00 0.00 41.50 3.55
3098 6077 2.288518 GGTCTGGAAGTGAGACAGTGTC 60.289 54.545 15.78 15.78 41.50 3.67
3099 6078 2.362397 GTCTGGAAGTGAGACAGTGTCA 59.638 50.000 24.73 3.11 39.80 3.58
3100 6079 3.031013 TCTGGAAGTGAGACAGTGTCAA 58.969 45.455 24.73 10.13 32.49 3.18
3101 6080 3.068732 TCTGGAAGTGAGACAGTGTCAAG 59.931 47.826 24.73 8.87 32.49 3.02
3102 6081 3.031013 TGGAAGTGAGACAGTGTCAAGA 58.969 45.455 24.73 5.48 34.60 3.02
3103 6082 3.181475 TGGAAGTGAGACAGTGTCAAGAC 60.181 47.826 24.73 16.48 34.60 3.01
3104 6083 3.068873 GGAAGTGAGACAGTGTCAAGACT 59.931 47.826 24.73 18.26 34.60 3.24
3105 6084 4.278669 GGAAGTGAGACAGTGTCAAGACTA 59.721 45.833 24.73 2.02 34.60 2.59
3106 6085 5.446143 AAGTGAGACAGTGTCAAGACTAG 57.554 43.478 24.73 0.00 34.60 2.57
3107 6086 4.720046 AGTGAGACAGTGTCAAGACTAGA 58.280 43.478 24.73 0.00 34.60 2.43
3108 6087 5.133941 AGTGAGACAGTGTCAAGACTAGAA 58.866 41.667 24.73 0.00 34.60 2.10
3109 6088 5.594725 AGTGAGACAGTGTCAAGACTAGAAA 59.405 40.000 24.73 0.00 34.60 2.52
3110 6089 6.096987 AGTGAGACAGTGTCAAGACTAGAAAA 59.903 38.462 24.73 0.00 34.60 2.29
3111 6090 6.757010 GTGAGACAGTGTCAAGACTAGAAAAA 59.243 38.462 24.73 0.00 34.60 1.94
3112 6091 6.757010 TGAGACAGTGTCAAGACTAGAAAAAC 59.243 38.462 24.73 0.00 34.60 2.43
3113 6092 5.749109 AGACAGTGTCAAGACTAGAAAAACG 59.251 40.000 24.73 0.00 34.60 3.60
3114 6093 4.270325 ACAGTGTCAAGACTAGAAAAACGC 59.730 41.667 0.00 0.00 0.00 4.84
3115 6094 3.808174 AGTGTCAAGACTAGAAAAACGCC 59.192 43.478 0.00 0.00 0.00 5.68
3116 6095 3.059120 GTGTCAAGACTAGAAAAACGCCC 60.059 47.826 0.00 0.00 0.00 6.13
3117 6096 2.157085 GTCAAGACTAGAAAAACGCCCG 59.843 50.000 0.00 0.00 0.00 6.13
3118 6097 2.140717 CAAGACTAGAAAAACGCCCGT 58.859 47.619 0.00 0.00 0.00 5.28
3119 6098 1.792006 AGACTAGAAAAACGCCCGTG 58.208 50.000 0.00 0.00 0.00 4.94
3120 6099 0.165295 GACTAGAAAAACGCCCGTGC 59.835 55.000 0.00 0.00 0.00 5.34
3138 6117 3.758172 GTTGCAACGGGGTCACAT 58.242 55.556 14.90 0.00 0.00 3.21
3139 6118 2.037871 GTTGCAACGGGGTCACATT 58.962 52.632 14.90 0.00 0.00 2.71
3140 6119 1.240256 GTTGCAACGGGGTCACATTA 58.760 50.000 14.90 0.00 0.00 1.90
3141 6120 1.609555 GTTGCAACGGGGTCACATTAA 59.390 47.619 14.90 0.00 0.00 1.40
3142 6121 1.982660 TGCAACGGGGTCACATTAAA 58.017 45.000 0.00 0.00 0.00 1.52
3143 6122 2.520069 TGCAACGGGGTCACATTAAAT 58.480 42.857 0.00 0.00 0.00 1.40
3144 6123 2.894126 TGCAACGGGGTCACATTAAATT 59.106 40.909 0.00 0.00 0.00 1.82
3145 6124 3.322254 TGCAACGGGGTCACATTAAATTT 59.678 39.130 0.00 0.00 0.00 1.82
3146 6125 4.523173 TGCAACGGGGTCACATTAAATTTA 59.477 37.500 0.00 0.00 0.00 1.40
3147 6126 5.010719 TGCAACGGGGTCACATTAAATTTAA 59.989 36.000 12.85 12.85 0.00 1.52
3148 6127 5.575218 GCAACGGGGTCACATTAAATTTAAG 59.425 40.000 15.45 10.20 0.00 1.85
3149 6128 6.570764 GCAACGGGGTCACATTAAATTTAAGA 60.571 38.462 15.45 5.69 0.00 2.10
3150 6129 6.753107 ACGGGGTCACATTAAATTTAAGAG 57.247 37.500 15.45 12.52 0.00 2.85
3151 6130 6.243148 ACGGGGTCACATTAAATTTAAGAGT 58.757 36.000 15.45 13.07 0.00 3.24
3152 6131 6.717997 ACGGGGTCACATTAAATTTAAGAGTT 59.282 34.615 15.45 0.00 0.00 3.01
3153 6132 7.094506 ACGGGGTCACATTAAATTTAAGAGTTC 60.095 37.037 15.45 11.03 0.00 3.01
3154 6133 7.094549 CGGGGTCACATTAAATTTAAGAGTTCA 60.095 37.037 15.45 4.45 0.00 3.18
3155 6134 8.581578 GGGGTCACATTAAATTTAAGAGTTCAA 58.418 33.333 15.45 3.81 0.00 2.69
3224 6203 7.881775 AGTGATATTGATGACCCTTTTTACC 57.118 36.000 0.00 0.00 0.00 2.85
3225 6204 7.410174 AGTGATATTGATGACCCTTTTTACCA 58.590 34.615 0.00 0.00 0.00 3.25
3226 6205 8.061304 AGTGATATTGATGACCCTTTTTACCAT 58.939 33.333 0.00 0.00 0.00 3.55
3227 6206 8.352942 GTGATATTGATGACCCTTTTTACCATC 58.647 37.037 0.00 0.00 35.47 3.51
3228 6207 8.058235 TGATATTGATGACCCTTTTTACCATCA 58.942 33.333 0.00 0.00 40.99 3.07
3230 6209 6.985653 TTGATGACCCTTTTTACCATCAAA 57.014 33.333 12.04 0.00 45.52 2.69
3231 6210 7.552050 TTGATGACCCTTTTTACCATCAAAT 57.448 32.000 12.04 0.00 45.52 2.32
3232 6211 7.552050 TGATGACCCTTTTTACCATCAAATT 57.448 32.000 0.00 0.00 40.14 1.82
3233 6212 7.610865 TGATGACCCTTTTTACCATCAAATTC 58.389 34.615 0.00 0.00 40.14 2.17
3234 6213 7.454380 TGATGACCCTTTTTACCATCAAATTCT 59.546 33.333 0.00 0.00 40.14 2.40
3235 6214 7.227049 TGACCCTTTTTACCATCAAATTCTC 57.773 36.000 0.00 0.00 0.00 2.87
3236 6215 6.780031 TGACCCTTTTTACCATCAAATTCTCA 59.220 34.615 0.00 0.00 0.00 3.27
3237 6216 6.993079 ACCCTTTTTACCATCAAATTCTCAC 58.007 36.000 0.00 0.00 0.00 3.51
3238 6217 6.553100 ACCCTTTTTACCATCAAATTCTCACA 59.447 34.615 0.00 0.00 0.00 3.58
3239 6218 6.868339 CCCTTTTTACCATCAAATTCTCACAC 59.132 38.462 0.00 0.00 0.00 3.82
3240 6219 7.432869 CCTTTTTACCATCAAATTCTCACACA 58.567 34.615 0.00 0.00 0.00 3.72
3241 6220 7.382218 CCTTTTTACCATCAAATTCTCACACAC 59.618 37.037 0.00 0.00 0.00 3.82
3242 6221 5.605564 TTACCATCAAATTCTCACACACG 57.394 39.130 0.00 0.00 0.00 4.49
3243 6222 2.226437 ACCATCAAATTCTCACACACGC 59.774 45.455 0.00 0.00 0.00 5.34
3244 6223 2.226200 CCATCAAATTCTCACACACGCA 59.774 45.455 0.00 0.00 0.00 5.24
3245 6224 3.228749 CATCAAATTCTCACACACGCAC 58.771 45.455 0.00 0.00 0.00 5.34
3246 6225 1.601903 TCAAATTCTCACACACGCACC 59.398 47.619 0.00 0.00 0.00 5.01
3247 6226 0.951558 AAATTCTCACACACGCACCC 59.048 50.000 0.00 0.00 0.00 4.61
3248 6227 0.108585 AATTCTCACACACGCACCCT 59.891 50.000 0.00 0.00 0.00 4.34
3249 6228 0.320771 ATTCTCACACACGCACCCTC 60.321 55.000 0.00 0.00 0.00 4.30
3250 6229 1.399744 TTCTCACACACGCACCCTCT 61.400 55.000 0.00 0.00 0.00 3.69
3251 6230 1.373497 CTCACACACGCACCCTCTC 60.373 63.158 0.00 0.00 0.00 3.20
3252 6231 2.357517 CACACACGCACCCTCTCC 60.358 66.667 0.00 0.00 0.00 3.71
3253 6232 3.626924 ACACACGCACCCTCTCCC 61.627 66.667 0.00 0.00 0.00 4.30
3254 6233 3.314331 CACACGCACCCTCTCCCT 61.314 66.667 0.00 0.00 0.00 4.20
3255 6234 2.997897 ACACGCACCCTCTCCCTC 60.998 66.667 0.00 0.00 0.00 4.30
3256 6235 3.775654 CACGCACCCTCTCCCTCC 61.776 72.222 0.00 0.00 0.00 4.30
3258 6237 4.787280 CGCACCCTCTCCCTCCCT 62.787 72.222 0.00 0.00 0.00 4.20
3259 6238 2.766229 GCACCCTCTCCCTCCCTC 60.766 72.222 0.00 0.00 0.00 4.30
3260 6239 3.114390 CACCCTCTCCCTCCCTCT 58.886 66.667 0.00 0.00 0.00 3.69
3261 6240 1.394151 CACCCTCTCCCTCCCTCTT 59.606 63.158 0.00 0.00 0.00 2.85
3262 6241 0.689412 CACCCTCTCCCTCCCTCTTC 60.689 65.000 0.00 0.00 0.00 2.87
3263 6242 1.074850 CCCTCTCCCTCCCTCTTCC 60.075 68.421 0.00 0.00 0.00 3.46
3264 6243 1.598856 CCCTCTCCCTCCCTCTTCCT 61.599 65.000 0.00 0.00 0.00 3.36
3265 6244 0.105709 CCTCTCCCTCCCTCTTCCTC 60.106 65.000 0.00 0.00 0.00 3.71
3266 6245 0.633921 CTCTCCCTCCCTCTTCCTCA 59.366 60.000 0.00 0.00 0.00 3.86
3267 6246 0.336737 TCTCCCTCCCTCTTCCTCAC 59.663 60.000 0.00 0.00 0.00 3.51
3268 6247 0.338120 CTCCCTCCCTCTTCCTCACT 59.662 60.000 0.00 0.00 0.00 3.41
3269 6248 0.336737 TCCCTCCCTCTTCCTCACTC 59.663 60.000 0.00 0.00 0.00 3.51
3270 6249 0.338120 CCCTCCCTCTTCCTCACTCT 59.662 60.000 0.00 0.00 0.00 3.24
3271 6250 1.687996 CCCTCCCTCTTCCTCACTCTC 60.688 61.905 0.00 0.00 0.00 3.20
3272 6251 1.287739 CCTCCCTCTTCCTCACTCTCT 59.712 57.143 0.00 0.00 0.00 3.10
3273 6252 2.654863 CTCCCTCTTCCTCACTCTCTC 58.345 57.143 0.00 0.00 0.00 3.20
3274 6253 2.242196 CTCCCTCTTCCTCACTCTCTCT 59.758 54.545 0.00 0.00 0.00 3.10
3275 6254 2.241176 TCCCTCTTCCTCACTCTCTCTC 59.759 54.545 0.00 0.00 0.00 3.20
3276 6255 2.654863 CCTCTTCCTCACTCTCTCTCC 58.345 57.143 0.00 0.00 0.00 3.71
3277 6256 2.654863 CTCTTCCTCACTCTCTCTCCC 58.345 57.143 0.00 0.00 0.00 4.30
3278 6257 2.242196 CTCTTCCTCACTCTCTCTCCCT 59.758 54.545 0.00 0.00 0.00 4.20
3279 6258 2.241176 TCTTCCTCACTCTCTCTCCCTC 59.759 54.545 0.00 0.00 0.00 4.30
3280 6259 1.979809 TCCTCACTCTCTCTCCCTCT 58.020 55.000 0.00 0.00 0.00 3.69
3281 6260 1.843851 TCCTCACTCTCTCTCCCTCTC 59.156 57.143 0.00 0.00 0.00 3.20
3282 6261 1.846439 CCTCACTCTCTCTCCCTCTCT 59.154 57.143 0.00 0.00 0.00 3.10
3283 6262 2.158755 CCTCACTCTCTCTCCCTCTCTC 60.159 59.091 0.00 0.00 0.00 3.20
3284 6263 1.843851 TCACTCTCTCTCCCTCTCTCC 59.156 57.143 0.00 0.00 0.00 3.71
3285 6264 1.133792 CACTCTCTCTCCCTCTCTCCC 60.134 61.905 0.00 0.00 0.00 4.30
3286 6265 0.478507 CTCTCTCTCCCTCTCTCCCC 59.521 65.000 0.00 0.00 0.00 4.81
3287 6266 0.996762 TCTCTCTCCCTCTCTCCCCC 60.997 65.000 0.00 0.00 0.00 5.40
3288 6267 0.998945 CTCTCTCCCTCTCTCCCCCT 60.999 65.000 0.00 0.00 0.00 4.79
3289 6268 0.996762 TCTCTCCCTCTCTCCCCCTC 60.997 65.000 0.00 0.00 0.00 4.30
3290 6269 0.998945 CTCTCCCTCTCTCCCCCTCT 60.999 65.000 0.00 0.00 0.00 3.69
3291 6270 0.996762 TCTCCCTCTCTCCCCCTCTC 60.997 65.000 0.00 0.00 0.00 3.20
3292 6271 0.998945 CTCCCTCTCTCCCCCTCTCT 60.999 65.000 0.00 0.00 0.00 3.10
3293 6272 0.996762 TCCCTCTCTCCCCCTCTCTC 60.997 65.000 0.00 0.00 0.00 3.20
3294 6273 0.998945 CCCTCTCTCCCCCTCTCTCT 60.999 65.000 0.00 0.00 0.00 3.10
3295 6274 0.478507 CCTCTCTCCCCCTCTCTCTC 59.521 65.000 0.00 0.00 0.00 3.20
3296 6275 1.522900 CTCTCTCCCCCTCTCTCTCT 58.477 60.000 0.00 0.00 0.00 3.10
3297 6276 2.698967 CCTCTCTCCCCCTCTCTCTCTA 60.699 59.091 0.00 0.00 0.00 2.43
3298 6277 3.053077 CTCTCTCCCCCTCTCTCTCTAA 58.947 54.545 0.00 0.00 0.00 2.10
3299 6278 2.781174 TCTCTCCCCCTCTCTCTCTAAC 59.219 54.545 0.00 0.00 0.00 2.34
3300 6279 2.512056 CTCTCCCCCTCTCTCTCTAACA 59.488 54.545 0.00 0.00 0.00 2.41
3301 6280 2.242708 TCTCCCCCTCTCTCTCTAACAC 59.757 54.545 0.00 0.00 0.00 3.32
3302 6281 2.000803 TCCCCCTCTCTCTCTAACACA 58.999 52.381 0.00 0.00 0.00 3.72
3303 6282 2.104170 CCCCCTCTCTCTCTAACACAC 58.896 57.143 0.00 0.00 0.00 3.82
3304 6283 2.557676 CCCCCTCTCTCTCTAACACACA 60.558 54.545 0.00 0.00 0.00 3.72
3305 6284 2.494073 CCCCTCTCTCTCTAACACACAC 59.506 54.545 0.00 0.00 0.00 3.82
3306 6285 3.157881 CCCTCTCTCTCTAACACACACA 58.842 50.000 0.00 0.00 0.00 3.72
3307 6286 3.766591 CCCTCTCTCTCTAACACACACAT 59.233 47.826 0.00 0.00 0.00 3.21
3308 6287 4.950475 CCCTCTCTCTCTAACACACACATA 59.050 45.833 0.00 0.00 0.00 2.29
3309 6288 5.596361 CCCTCTCTCTCTAACACACACATAT 59.404 44.000 0.00 0.00 0.00 1.78
3310 6289 6.238897 CCCTCTCTCTCTAACACACACATATC 60.239 46.154 0.00 0.00 0.00 1.63
3311 6290 6.238897 CCTCTCTCTCTAACACACACATATCC 60.239 46.154 0.00 0.00 0.00 2.59
3312 6291 6.187682 TCTCTCTCTAACACACACATATCCA 58.812 40.000 0.00 0.00 0.00 3.41
3313 6292 6.836007 TCTCTCTCTAACACACACATATCCAT 59.164 38.462 0.00 0.00 0.00 3.41
3314 6293 7.013750 TCTCTCTCTAACACACACATATCCATC 59.986 40.741 0.00 0.00 0.00 3.51
3315 6294 6.836007 TCTCTCTAACACACACATATCCATCT 59.164 38.462 0.00 0.00 0.00 2.90
3316 6295 7.343057 TCTCTCTAACACACACATATCCATCTT 59.657 37.037 0.00 0.00 0.00 2.40
3328 6307 6.370994 CACATATCCATCTTATCACTTCTGCC 59.629 42.308 0.00 0.00 0.00 4.85
3444 6452 4.781616 TCCACGCCGATACCCCCA 62.782 66.667 0.00 0.00 0.00 4.96
3552 6561 1.108776 GCCCACAATGTCAGATGCAT 58.891 50.000 0.00 0.00 0.00 3.96
3661 6676 4.711949 CTGCCGCCAGCCTTCTGT 62.712 66.667 0.00 0.00 42.71 3.41
3688 6703 4.738998 CCGTGCCCTCCATTGCCA 62.739 66.667 0.00 0.00 0.00 4.92
3794 6809 1.300620 CTTCAGACGCCACCAACGA 60.301 57.895 0.00 0.00 0.00 3.85
3811 6826 4.222589 ATTCGATTGCCGCGCGTG 62.223 61.111 29.95 20.72 38.37 5.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 5.486526 TCATTGTTGCAAAAGAAACTTGGT 58.513 33.333 0.00 0.00 0.00 3.67
18 19 6.162079 TGTTCTTTGAGTTCATTGTTGCAAA 58.838 32.000 0.00 0.00 0.00 3.68
60 61 4.894784 TCCTGTGTCTTTTGTAGTGATCC 58.105 43.478 0.00 0.00 0.00 3.36
80 81 4.040217 AGGAGACATGTAGATGATGCTTCC 59.960 45.833 6.90 5.96 33.36 3.46
87 88 3.570540 CCAGGAGGAGACATGTAGATGA 58.429 50.000 6.90 0.00 36.89 2.92
425 426 3.769844 CACTATGTCTAGGTGGTCCAAGT 59.230 47.826 0.00 0.00 35.89 3.16
427 428 4.023980 CTCACTATGTCTAGGTGGTCCAA 58.976 47.826 0.00 0.00 35.89 3.53
430 431 3.292460 AGCTCACTATGTCTAGGTGGTC 58.708 50.000 0.00 0.00 0.00 4.02
471 472 0.547471 TGCTCAAGTCTGGGATGGGA 60.547 55.000 0.00 0.00 0.00 4.37
532 533 3.322191 TGCTCCCTTAAAACCCTGTTT 57.678 42.857 0.00 0.00 0.00 2.83
539 540 4.690748 GGCAAAAGAATGCTCCCTTAAAAC 59.309 41.667 0.00 0.00 45.68 2.43
557 558 3.861840 TGAAAACCAACAAATCGGCAAA 58.138 36.364 0.00 0.00 0.00 3.68
580 581 5.975693 ACCAACAGTCTGACAAAAGAAAA 57.024 34.783 10.88 0.00 0.00 2.29
598 599 0.829333 ATGCACACAGCCAAAACCAA 59.171 45.000 0.00 0.00 44.83 3.67
604 605 1.167851 GCTAAGATGCACACAGCCAA 58.832 50.000 0.00 0.00 44.83 4.52
632 633 1.942657 CATGATGATCAACACCCGGTC 59.057 52.381 7.94 0.00 0.00 4.79
636 637 4.012374 ACAACTCATGATGATCAACACCC 58.988 43.478 7.94 0.00 0.00 4.61
637 638 6.765036 AGATACAACTCATGATGATCAACACC 59.235 38.462 7.94 0.00 0.00 4.16
644 645 9.708092 CATCAAGTAGATACAACTCATGATGAT 57.292 33.333 10.35 0.00 34.43 2.45
666 667 6.816134 TTATTAACTGAAACAGCAGCATCA 57.184 33.333 0.00 0.00 39.51 3.07
675 676 5.399113 AGGGCCCTTTTATTAACTGAAACA 58.601 37.500 22.28 0.00 0.00 2.83
676 677 5.995565 AGGGCCCTTTTATTAACTGAAAC 57.004 39.130 22.28 0.00 0.00 2.78
707 708 8.573035 ACGGATAAACATAACACACATTTTCTT 58.427 29.630 0.00 0.00 0.00 2.52
708 709 8.106247 ACGGATAAACATAACACACATTTTCT 57.894 30.769 0.00 0.00 0.00 2.52
709 710 9.997482 ATACGGATAAACATAACACACATTTTC 57.003 29.630 0.00 0.00 0.00 2.29
726 727 6.723298 AATCATTTTGGGCAATACGGATAA 57.277 33.333 0.00 0.00 0.00 1.75
784 785 2.297880 TGCGGATACACGTAGCCATATT 59.702 45.455 11.74 0.00 41.48 1.28
814 815 3.625764 TGCAGATTATTTCCGGTGTAAGC 59.374 43.478 0.00 2.42 0.00 3.09
850 851 9.125026 CTGCAGGTTAGGACTTTATCATTTATT 57.875 33.333 5.57 0.00 0.00 1.40
853 854 6.599638 GTCTGCAGGTTAGGACTTTATCATTT 59.400 38.462 15.13 0.00 0.00 2.32
854 855 6.116126 GTCTGCAGGTTAGGACTTTATCATT 58.884 40.000 15.13 0.00 0.00 2.57
856 857 4.530553 TGTCTGCAGGTTAGGACTTTATCA 59.469 41.667 15.13 0.00 0.00 2.15
857 858 5.086104 TGTCTGCAGGTTAGGACTTTATC 57.914 43.478 15.13 0.00 0.00 1.75
858 859 5.700402 ATGTCTGCAGGTTAGGACTTTAT 57.300 39.130 15.13 0.00 0.00 1.40
859 860 6.439375 TCTTATGTCTGCAGGTTAGGACTTTA 59.561 38.462 15.13 0.00 0.00 1.85
860 861 5.248477 TCTTATGTCTGCAGGTTAGGACTTT 59.752 40.000 15.13 0.00 0.00 2.66
864 865 3.133003 GCTCTTATGTCTGCAGGTTAGGA 59.867 47.826 15.13 8.24 0.00 2.94
867 868 4.956700 ACTAGCTCTTATGTCTGCAGGTTA 59.043 41.667 15.13 0.51 0.00 2.85
869 870 3.370104 ACTAGCTCTTATGTCTGCAGGT 58.630 45.455 15.13 3.08 0.00 4.00
870 871 4.582656 ACTACTAGCTCTTATGTCTGCAGG 59.417 45.833 15.13 0.00 0.00 4.85
872 873 6.120220 TGTACTACTAGCTCTTATGTCTGCA 58.880 40.000 0.00 0.00 0.00 4.41
873 874 6.621316 TGTACTACTAGCTCTTATGTCTGC 57.379 41.667 0.00 0.00 0.00 4.26
875 876 6.207810 GGCATGTACTACTAGCTCTTATGTCT 59.792 42.308 0.00 0.00 0.00 3.41
877 878 6.015856 CAGGCATGTACTACTAGCTCTTATGT 60.016 42.308 0.00 0.00 0.00 2.29
878 879 6.015856 ACAGGCATGTACTACTAGCTCTTATG 60.016 42.308 0.06 0.00 38.09 1.90
879 880 6.071984 ACAGGCATGTACTACTAGCTCTTAT 58.928 40.000 0.06 0.00 38.09 1.73
955 3897 2.040545 TCACCTTTCGGCTTTGGGATAA 59.959 45.455 0.00 0.00 0.00 1.75
978 3920 5.574891 TGAGAGATCTAAGTGTCTCAAGC 57.425 43.478 7.44 0.00 43.14 4.01
1014 3956 4.094476 AGAGAAAAGGTGGGAGACGAATA 58.906 43.478 0.00 0.00 0.00 1.75
1016 3958 2.326428 AGAGAAAAGGTGGGAGACGAA 58.674 47.619 0.00 0.00 0.00 3.85
1087 4029 3.509740 GGCAAGAAGAACCGTAGTAGTC 58.490 50.000 0.00 0.00 0.00 2.59
1240 4182 4.844349 TGAAAGAGGACCAAGGGAATAG 57.156 45.455 0.00 0.00 0.00 1.73
1298 4241 1.030457 CCCCTAGCGTACAGGTACAG 58.970 60.000 9.97 4.29 35.87 2.74
1301 4244 1.039233 GCACCCCTAGCGTACAGGTA 61.039 60.000 0.00 0.00 0.00 3.08
1302 4245 2.356780 GCACCCCTAGCGTACAGGT 61.357 63.158 0.00 0.00 0.00 4.00
1303 4246 2.499685 GCACCCCTAGCGTACAGG 59.500 66.667 0.00 0.00 0.00 4.00
1537 4481 2.426024 TCAAGCGCGAGAAGGTACTAAT 59.574 45.455 12.10 0.00 38.49 1.73
1539 4483 1.400846 CTCAAGCGCGAGAAGGTACTA 59.599 52.381 12.10 0.00 38.49 1.82
1540 4484 2.490933 ACTCAAGCGCGAGAAGGTACT 61.491 52.381 12.10 0.00 36.93 2.73
1541 4485 0.109226 ACTCAAGCGCGAGAAGGTAC 60.109 55.000 12.10 0.00 36.47 3.34
1561 4505 3.747529 TGGAACGACCGGTATTTTCTTTC 59.252 43.478 7.34 3.84 42.61 2.62
1562 4506 3.742385 TGGAACGACCGGTATTTTCTTT 58.258 40.909 7.34 0.00 42.61 2.52
1563 4507 3.405823 TGGAACGACCGGTATTTTCTT 57.594 42.857 7.34 0.00 42.61 2.52
1564 4508 3.267483 CATGGAACGACCGGTATTTTCT 58.733 45.455 7.34 0.00 42.61 2.52
1585 4529 1.308998 CATGTACTTCCATTCCGCCC 58.691 55.000 0.00 0.00 0.00 6.13
1846 4808 5.263599 TGTCTCCGGGTAATTTGTCTAGTA 58.736 41.667 0.00 0.00 0.00 1.82
1847 4809 4.091549 TGTCTCCGGGTAATTTGTCTAGT 58.908 43.478 0.00 0.00 0.00 2.57
1848 4810 4.730949 TGTCTCCGGGTAATTTGTCTAG 57.269 45.455 0.00 0.00 0.00 2.43
1849 4811 4.682320 GCATGTCTCCGGGTAATTTGTCTA 60.682 45.833 0.00 0.00 0.00 2.59
1850 4812 3.873910 CATGTCTCCGGGTAATTTGTCT 58.126 45.455 0.00 0.00 0.00 3.41
1851 4813 2.354821 GCATGTCTCCGGGTAATTTGTC 59.645 50.000 0.00 0.00 0.00 3.18
1904 4866 3.674997 TGCTTCCCAATCTAACAGTGTC 58.325 45.455 0.00 0.00 0.00 3.67
1919 4881 0.463654 TGTATGCCGGACATGCTTCC 60.464 55.000 20.87 0.00 41.56 3.46
1930 4892 1.134487 CGCACTTGGTTGTATGCCG 59.866 57.895 0.00 0.00 34.49 5.69
2045 5014 8.361139 CAACTCCATCATTAACTAGGTAGGTAG 58.639 40.741 0.00 0.00 0.00 3.18
2087 5056 0.676466 TCAGTTGGCCGTTGCTATGG 60.676 55.000 0.00 1.55 37.74 2.74
2099 5068 3.716006 CGCTGGCGTGTCAGTTGG 61.716 66.667 6.83 0.00 37.12 3.77
2124 5093 2.570415 TGTTAAATTCAGGGGACGCA 57.430 45.000 0.00 0.00 0.00 5.24
2127 5096 4.340617 TCACCATGTTAAATTCAGGGGAC 58.659 43.478 1.96 0.00 40.47 4.46
2139 5108 4.261197 CGAGAGTCATCGATCACCATGTTA 60.261 45.833 0.00 0.00 45.56 2.41
2179 5148 1.143277 TGGTCGGCAAAAGGAAAGGTA 59.857 47.619 0.00 0.00 0.00 3.08
2260 5229 2.358737 GTTGGGCCTGAGTGACCG 60.359 66.667 4.53 0.00 0.00 4.79
2261 5230 1.150536 TTGTTGGGCCTGAGTGACC 59.849 57.895 4.53 0.00 0.00 4.02
2301 5270 1.941377 TTGAATTTGGAGCAGGGCAT 58.059 45.000 0.00 0.00 0.00 4.40
2305 5274 5.458041 TCTTCTTTTGAATTTGGAGCAGG 57.542 39.130 0.00 0.00 37.85 4.85
2347 5316 4.641989 GGGGTAGTACGTTGTGATAGAGAA 59.358 45.833 0.00 0.00 0.00 2.87
2348 5317 4.080129 AGGGGTAGTACGTTGTGATAGAGA 60.080 45.833 0.00 0.00 0.00 3.10
2368 5343 3.734902 GCATTTCGCTTTCCAATGTAGGG 60.735 47.826 0.00 0.00 37.77 3.53
2369 5344 3.438360 GCATTTCGCTTTCCAATGTAGG 58.562 45.455 0.00 0.00 37.77 3.18
2370 5345 3.100817 CGCATTTCGCTTTCCAATGTAG 58.899 45.455 0.00 0.00 39.08 2.74
2419 5394 0.864455 GGCATTATCGACAGAGCTGC 59.136 55.000 0.00 0.00 0.00 5.25
2678 5653 3.415087 GGAGTGGAGCAGCCCCAT 61.415 66.667 0.00 0.00 35.91 4.00
2798 5773 1.971167 GCACACCGAGATTGCCCAA 60.971 57.895 0.00 0.00 0.00 4.12
2833 5808 0.107459 GGCAGTTGACCCTGATCTCC 60.107 60.000 0.00 0.00 34.23 3.71
2836 5811 1.450312 CCGGCAGTTGACCCTGATC 60.450 63.158 0.00 0.00 34.23 2.92
2863 5838 4.999310 AGATACCCAGGATCTATCGTCAA 58.001 43.478 0.00 0.00 31.72 3.18
2910 5885 1.145803 CTCACTTCCCGTTTCCGAAC 58.854 55.000 0.00 0.00 35.63 3.95
2912 5887 0.316204 GTCTCACTTCCCGTTTCCGA 59.684 55.000 0.00 0.00 35.63 4.55
2949 5928 9.590451 AACAAATGCATTTAATTCCAGTAGATG 57.410 29.630 23.69 9.97 0.00 2.90
2972 5951 4.697828 TGTGCGCAAGAATTAGGATTAACA 59.302 37.500 14.00 0.00 43.02 2.41
2987 5966 5.391523 GGATTAACTTGATACTTGTGCGCAA 60.392 40.000 14.00 12.92 0.00 4.85
2988 5967 4.094294 GGATTAACTTGATACTTGTGCGCA 59.906 41.667 5.66 5.66 0.00 6.09
2989 5968 4.332819 AGGATTAACTTGATACTTGTGCGC 59.667 41.667 0.00 0.00 0.00 6.09
2990 5969 7.534085 TTAGGATTAACTTGATACTTGTGCG 57.466 36.000 0.00 0.00 0.00 5.34
2991 5970 9.937175 GAATTAGGATTAACTTGATACTTGTGC 57.063 33.333 0.00 0.00 0.00 4.57
3009 5988 9.705290 GAATTTGGCTTGTAAAAAGAATTAGGA 57.295 29.630 0.00 0.00 0.00 2.94
3010 5989 8.935844 GGAATTTGGCTTGTAAAAAGAATTAGG 58.064 33.333 0.00 0.00 0.00 2.69
3011 5990 9.487790 TGGAATTTGGCTTGTAAAAAGAATTAG 57.512 29.630 0.00 0.00 0.00 1.73
3012 5991 9.487790 CTGGAATTTGGCTTGTAAAAAGAATTA 57.512 29.630 0.00 0.00 0.00 1.40
3013 5992 7.992608 ACTGGAATTTGGCTTGTAAAAAGAATT 59.007 29.630 0.00 0.00 0.00 2.17
3014 5993 7.508687 ACTGGAATTTGGCTTGTAAAAAGAAT 58.491 30.769 0.00 0.00 0.00 2.40
3015 5994 6.883744 ACTGGAATTTGGCTTGTAAAAAGAA 58.116 32.000 0.00 0.00 0.00 2.52
3016 5995 6.478512 ACTGGAATTTGGCTTGTAAAAAGA 57.521 33.333 0.00 0.00 0.00 2.52
3017 5996 7.206687 TGTACTGGAATTTGGCTTGTAAAAAG 58.793 34.615 0.00 0.00 0.00 2.27
3018 5997 7.113658 TGTACTGGAATTTGGCTTGTAAAAA 57.886 32.000 0.00 0.00 0.00 1.94
3019 5998 6.716934 TGTACTGGAATTTGGCTTGTAAAA 57.283 33.333 0.00 0.00 0.00 1.52
3020 5999 6.461788 GGTTGTACTGGAATTTGGCTTGTAAA 60.462 38.462 0.00 0.00 0.00 2.01
3021 6000 5.010213 GGTTGTACTGGAATTTGGCTTGTAA 59.990 40.000 0.00 0.00 0.00 2.41
3022 6001 4.521256 GGTTGTACTGGAATTTGGCTTGTA 59.479 41.667 0.00 0.00 0.00 2.41
3023 6002 3.320826 GGTTGTACTGGAATTTGGCTTGT 59.679 43.478 0.00 0.00 0.00 3.16
3024 6003 3.611530 CGGTTGTACTGGAATTTGGCTTG 60.612 47.826 0.00 0.00 0.00 4.01
3025 6004 2.556622 CGGTTGTACTGGAATTTGGCTT 59.443 45.455 0.00 0.00 0.00 4.35
3026 6005 2.159382 CGGTTGTACTGGAATTTGGCT 58.841 47.619 0.00 0.00 0.00 4.75
3027 6006 1.402325 GCGGTTGTACTGGAATTTGGC 60.402 52.381 0.00 0.00 0.00 4.52
3028 6007 1.883275 TGCGGTTGTACTGGAATTTGG 59.117 47.619 0.00 0.00 0.00 3.28
3029 6008 3.427503 GGATGCGGTTGTACTGGAATTTG 60.428 47.826 0.00 0.00 0.00 2.32
3030 6009 2.752903 GGATGCGGTTGTACTGGAATTT 59.247 45.455 0.00 0.00 0.00 1.82
3031 6010 2.290641 TGGATGCGGTTGTACTGGAATT 60.291 45.455 0.00 0.00 0.00 2.17
3032 6011 1.280710 TGGATGCGGTTGTACTGGAAT 59.719 47.619 0.00 0.00 0.00 3.01
3033 6012 0.687920 TGGATGCGGTTGTACTGGAA 59.312 50.000 0.00 0.00 0.00 3.53
3034 6013 0.036765 GTGGATGCGGTTGTACTGGA 60.037 55.000 0.00 0.00 0.00 3.86
3035 6014 0.321210 TGTGGATGCGGTTGTACTGG 60.321 55.000 0.00 0.00 0.00 4.00
3036 6015 1.398041 CATGTGGATGCGGTTGTACTG 59.602 52.381 0.00 0.00 0.00 2.74
3037 6016 1.678728 CCATGTGGATGCGGTTGTACT 60.679 52.381 0.00 0.00 37.39 2.73
3038 6017 0.732571 CCATGTGGATGCGGTTGTAC 59.267 55.000 0.00 0.00 37.39 2.90
3039 6018 0.615850 TCCATGTGGATGCGGTTGTA 59.384 50.000 0.00 0.00 39.78 2.41
3040 6019 0.251121 TTCCATGTGGATGCGGTTGT 60.251 50.000 1.98 0.00 44.98 3.32
3041 6020 0.171007 GTTCCATGTGGATGCGGTTG 59.829 55.000 1.98 0.00 44.98 3.77
3042 6021 0.038166 AGTTCCATGTGGATGCGGTT 59.962 50.000 1.98 0.00 44.98 4.44
3043 6022 0.908910 TAGTTCCATGTGGATGCGGT 59.091 50.000 1.98 0.00 44.98 5.68
3044 6023 1.134401 AGTAGTTCCATGTGGATGCGG 60.134 52.381 1.98 0.00 44.98 5.69
3045 6024 1.935873 CAGTAGTTCCATGTGGATGCG 59.064 52.381 1.98 0.00 44.98 4.73
3046 6025 1.672881 GCAGTAGTTCCATGTGGATGC 59.327 52.381 1.98 5.75 44.98 3.91
3047 6026 2.989909 TGCAGTAGTTCCATGTGGATG 58.010 47.619 1.98 0.00 44.98 3.51
3048 6027 3.457380 AGATGCAGTAGTTCCATGTGGAT 59.543 43.478 1.98 0.00 44.98 3.41
3049 6028 2.840038 AGATGCAGTAGTTCCATGTGGA 59.160 45.455 0.00 0.00 43.73 4.02
3050 6029 3.272574 AGATGCAGTAGTTCCATGTGG 57.727 47.619 0.00 0.00 0.00 4.17
3051 6030 3.798878 CGTAGATGCAGTAGTTCCATGTG 59.201 47.826 0.00 0.00 0.00 3.21
3052 6031 3.181475 CCGTAGATGCAGTAGTTCCATGT 60.181 47.826 0.00 0.00 0.00 3.21
3053 6032 3.068165 TCCGTAGATGCAGTAGTTCCATG 59.932 47.826 0.00 0.00 0.00 3.66
3054 6033 3.068307 GTCCGTAGATGCAGTAGTTCCAT 59.932 47.826 0.00 0.00 0.00 3.41
3055 6034 2.426024 GTCCGTAGATGCAGTAGTTCCA 59.574 50.000 0.00 0.00 0.00 3.53
3056 6035 2.541178 CGTCCGTAGATGCAGTAGTTCC 60.541 54.545 0.00 0.00 0.00 3.62
3057 6036 2.541178 CCGTCCGTAGATGCAGTAGTTC 60.541 54.545 0.00 0.00 0.00 3.01
3058 6037 1.404391 CCGTCCGTAGATGCAGTAGTT 59.596 52.381 0.00 0.00 0.00 2.24
3059 6038 1.022735 CCGTCCGTAGATGCAGTAGT 58.977 55.000 0.00 0.00 0.00 2.73
3060 6039 1.002684 GACCGTCCGTAGATGCAGTAG 60.003 57.143 0.00 0.00 0.00 2.57
3061 6040 1.019673 GACCGTCCGTAGATGCAGTA 58.980 55.000 0.00 0.00 0.00 2.74
3062 6041 0.680280 AGACCGTCCGTAGATGCAGT 60.680 55.000 0.00 0.00 0.00 4.40
3063 6042 0.248661 CAGACCGTCCGTAGATGCAG 60.249 60.000 0.00 0.00 0.00 4.41
3064 6043 1.663379 CCAGACCGTCCGTAGATGCA 61.663 60.000 0.00 0.00 0.00 3.96
3065 6044 1.065928 CCAGACCGTCCGTAGATGC 59.934 63.158 0.00 0.00 0.00 3.91
3066 6045 1.065701 CTTCCAGACCGTCCGTAGATG 59.934 57.143 0.00 0.00 0.00 2.90
3067 6046 1.340795 ACTTCCAGACCGTCCGTAGAT 60.341 52.381 0.00 0.00 0.00 1.98
3068 6047 0.037303 ACTTCCAGACCGTCCGTAGA 59.963 55.000 0.00 0.00 0.00 2.59
3069 6048 0.170561 CACTTCCAGACCGTCCGTAG 59.829 60.000 0.00 0.00 0.00 3.51
3070 6049 0.250858 TCACTTCCAGACCGTCCGTA 60.251 55.000 0.00 0.00 0.00 4.02
3071 6050 1.524863 CTCACTTCCAGACCGTCCGT 61.525 60.000 0.00 0.00 0.00 4.69
3072 6051 1.213013 CTCACTTCCAGACCGTCCG 59.787 63.158 0.00 0.00 0.00 4.79
3073 6052 0.244178 GTCTCACTTCCAGACCGTCC 59.756 60.000 0.00 0.00 35.19 4.79
3074 6053 0.959553 TGTCTCACTTCCAGACCGTC 59.040 55.000 0.00 0.00 39.78 4.79
3075 6054 0.962489 CTGTCTCACTTCCAGACCGT 59.038 55.000 0.00 0.00 39.78 4.83
3076 6055 0.962489 ACTGTCTCACTTCCAGACCG 59.038 55.000 0.00 0.00 39.78 4.79
3077 6056 1.689273 ACACTGTCTCACTTCCAGACC 59.311 52.381 0.00 0.00 39.78 3.85
3078 6057 2.362397 TGACACTGTCTCACTTCCAGAC 59.638 50.000 10.54 0.00 40.75 3.51
3079 6058 2.666317 TGACACTGTCTCACTTCCAGA 58.334 47.619 10.54 0.00 33.15 3.86
3080 6059 3.068732 TCTTGACACTGTCTCACTTCCAG 59.931 47.826 10.54 0.00 33.15 3.86
3081 6060 3.031013 TCTTGACACTGTCTCACTTCCA 58.969 45.455 10.54 0.00 33.15 3.53
3082 6061 3.068873 AGTCTTGACACTGTCTCACTTCC 59.931 47.826 10.54 0.00 33.15 3.46
3083 6062 4.314740 AGTCTTGACACTGTCTCACTTC 57.685 45.455 10.54 0.00 33.15 3.01
3084 6063 5.133941 TCTAGTCTTGACACTGTCTCACTT 58.866 41.667 10.54 0.00 33.15 3.16
3085 6064 4.720046 TCTAGTCTTGACACTGTCTCACT 58.280 43.478 10.54 10.80 33.15 3.41
3086 6065 5.440234 TTCTAGTCTTGACACTGTCTCAC 57.560 43.478 10.54 4.59 33.15 3.51
3087 6066 6.465439 TTTTCTAGTCTTGACACTGTCTCA 57.535 37.500 10.54 0.00 33.15 3.27
3088 6067 6.074782 CGTTTTTCTAGTCTTGACACTGTCTC 60.075 42.308 10.54 0.00 33.15 3.36
3089 6068 5.749109 CGTTTTTCTAGTCTTGACACTGTCT 59.251 40.000 10.54 0.00 33.15 3.41
3090 6069 5.556570 GCGTTTTTCTAGTCTTGACACTGTC 60.557 44.000 1.86 1.86 0.00 3.51
3091 6070 4.270325 GCGTTTTTCTAGTCTTGACACTGT 59.730 41.667 3.49 0.00 0.00 3.55
3092 6071 4.318831 GGCGTTTTTCTAGTCTTGACACTG 60.319 45.833 3.49 0.00 0.00 3.66
3093 6072 3.808174 GGCGTTTTTCTAGTCTTGACACT 59.192 43.478 3.49 0.00 0.00 3.55
3094 6073 3.059120 GGGCGTTTTTCTAGTCTTGACAC 60.059 47.826 3.49 0.00 0.00 3.67
3095 6074 3.135994 GGGCGTTTTTCTAGTCTTGACA 58.864 45.455 3.49 0.00 0.00 3.58
3096 6075 2.157085 CGGGCGTTTTTCTAGTCTTGAC 59.843 50.000 0.00 0.00 0.00 3.18
3097 6076 2.224113 ACGGGCGTTTTTCTAGTCTTGA 60.224 45.455 0.00 0.00 0.00 3.02
3098 6077 2.096417 CACGGGCGTTTTTCTAGTCTTG 60.096 50.000 0.00 0.00 0.00 3.02
3099 6078 2.140717 CACGGGCGTTTTTCTAGTCTT 58.859 47.619 0.00 0.00 0.00 3.01
3100 6079 1.792006 CACGGGCGTTTTTCTAGTCT 58.208 50.000 0.00 0.00 0.00 3.24
3101 6080 0.165295 GCACGGGCGTTTTTCTAGTC 59.835 55.000 0.00 0.00 0.00 2.59
3102 6081 2.241171 GCACGGGCGTTTTTCTAGT 58.759 52.632 0.00 0.00 0.00 2.57
3121 6100 1.240256 TAATGTGACCCCGTTGCAAC 58.760 50.000 19.89 19.89 0.00 4.17
3122 6101 1.982660 TTAATGTGACCCCGTTGCAA 58.017 45.000 0.00 0.00 0.00 4.08
3123 6102 1.982660 TTTAATGTGACCCCGTTGCA 58.017 45.000 0.00 0.00 0.00 4.08
3124 6103 3.586100 AATTTAATGTGACCCCGTTGC 57.414 42.857 0.00 0.00 0.00 4.17
3125 6104 6.915349 TCTTAAATTTAATGTGACCCCGTTG 58.085 36.000 10.97 0.00 0.00 4.10
3126 6105 6.717997 ACTCTTAAATTTAATGTGACCCCGTT 59.282 34.615 10.97 0.00 0.00 4.44
3127 6106 6.243148 ACTCTTAAATTTAATGTGACCCCGT 58.757 36.000 10.97 0.00 0.00 5.28
3128 6107 6.753107 ACTCTTAAATTTAATGTGACCCCG 57.247 37.500 10.97 0.00 0.00 5.73
3129 6108 8.117813 TGAACTCTTAAATTTAATGTGACCCC 57.882 34.615 10.97 3.86 0.00 4.95
3198 6177 9.403583 GGTAAAAAGGGTCATCAATATCACTTA 57.596 33.333 0.00 0.00 0.00 2.24
3199 6178 7.893302 TGGTAAAAAGGGTCATCAATATCACTT 59.107 33.333 0.00 0.00 0.00 3.16
3200 6179 7.410174 TGGTAAAAAGGGTCATCAATATCACT 58.590 34.615 0.00 0.00 0.00 3.41
3201 6180 7.639113 TGGTAAAAAGGGTCATCAATATCAC 57.361 36.000 0.00 0.00 0.00 3.06
3202 6181 8.058235 TGATGGTAAAAAGGGTCATCAATATCA 58.942 33.333 0.00 0.00 40.50 2.15
3203 6182 8.463930 TGATGGTAAAAAGGGTCATCAATATC 57.536 34.615 0.00 0.00 40.50 1.63
3204 6183 8.837099 TTGATGGTAAAAAGGGTCATCAATAT 57.163 30.769 11.48 0.00 44.66 1.28
3205 6184 8.657387 TTTGATGGTAAAAAGGGTCATCAATA 57.343 30.769 14.92 6.54 46.98 1.90
3206 6185 7.552050 TTTGATGGTAAAAAGGGTCATCAAT 57.448 32.000 14.92 0.00 46.98 2.57
3207 6186 6.985653 TTTGATGGTAAAAAGGGTCATCAA 57.014 33.333 11.48 11.48 46.50 2.57
3208 6187 7.454380 AGAATTTGATGGTAAAAAGGGTCATCA 59.546 33.333 0.00 0.00 41.35 3.07
3209 6188 7.840931 AGAATTTGATGGTAAAAAGGGTCATC 58.159 34.615 0.00 0.00 35.93 2.92
3210 6189 7.454380 TGAGAATTTGATGGTAAAAAGGGTCAT 59.546 33.333 0.00 0.00 0.00 3.06
3211 6190 6.780031 TGAGAATTTGATGGTAAAAAGGGTCA 59.220 34.615 0.00 0.00 0.00 4.02
3212 6191 7.090808 GTGAGAATTTGATGGTAAAAAGGGTC 58.909 38.462 0.00 0.00 0.00 4.46
3213 6192 6.553100 TGTGAGAATTTGATGGTAAAAAGGGT 59.447 34.615 0.00 0.00 0.00 4.34
3214 6193 6.868339 GTGTGAGAATTTGATGGTAAAAAGGG 59.132 38.462 0.00 0.00 0.00 3.95
3215 6194 7.382218 GTGTGTGAGAATTTGATGGTAAAAAGG 59.618 37.037 0.00 0.00 0.00 3.11
3216 6195 7.113404 CGTGTGTGAGAATTTGATGGTAAAAAG 59.887 37.037 0.00 0.00 0.00 2.27
3217 6196 6.915300 CGTGTGTGAGAATTTGATGGTAAAAA 59.085 34.615 0.00 0.00 0.00 1.94
3218 6197 6.434596 CGTGTGTGAGAATTTGATGGTAAAA 58.565 36.000 0.00 0.00 0.00 1.52
3219 6198 5.561919 GCGTGTGTGAGAATTTGATGGTAAA 60.562 40.000 0.00 0.00 0.00 2.01
3220 6199 4.083537 GCGTGTGTGAGAATTTGATGGTAA 60.084 41.667 0.00 0.00 0.00 2.85
3221 6200 3.435327 GCGTGTGTGAGAATTTGATGGTA 59.565 43.478 0.00 0.00 0.00 3.25
3222 6201 2.226437 GCGTGTGTGAGAATTTGATGGT 59.774 45.455 0.00 0.00 0.00 3.55
3223 6202 2.226200 TGCGTGTGTGAGAATTTGATGG 59.774 45.455 0.00 0.00 0.00 3.51
3224 6203 3.228749 GTGCGTGTGTGAGAATTTGATG 58.771 45.455 0.00 0.00 0.00 3.07
3225 6204 2.226437 GGTGCGTGTGTGAGAATTTGAT 59.774 45.455 0.00 0.00 0.00 2.57
3226 6205 1.601903 GGTGCGTGTGTGAGAATTTGA 59.398 47.619 0.00 0.00 0.00 2.69
3227 6206 1.334960 GGGTGCGTGTGTGAGAATTTG 60.335 52.381 0.00 0.00 0.00 2.32
3228 6207 0.951558 GGGTGCGTGTGTGAGAATTT 59.048 50.000 0.00 0.00 0.00 1.82
3229 6208 0.108585 AGGGTGCGTGTGTGAGAATT 59.891 50.000 0.00 0.00 0.00 2.17
3230 6209 0.320771 GAGGGTGCGTGTGTGAGAAT 60.321 55.000 0.00 0.00 0.00 2.40
3231 6210 1.069090 GAGGGTGCGTGTGTGAGAA 59.931 57.895 0.00 0.00 0.00 2.87
3232 6211 1.806461 GAGAGGGTGCGTGTGTGAGA 61.806 60.000 0.00 0.00 0.00 3.27
3233 6212 1.373497 GAGAGGGTGCGTGTGTGAG 60.373 63.158 0.00 0.00 0.00 3.51
3234 6213 2.734591 GAGAGGGTGCGTGTGTGA 59.265 61.111 0.00 0.00 0.00 3.58
3235 6214 2.357517 GGAGAGGGTGCGTGTGTG 60.358 66.667 0.00 0.00 0.00 3.82
3236 6215 3.626924 GGGAGAGGGTGCGTGTGT 61.627 66.667 0.00 0.00 0.00 3.72
3237 6216 3.302347 GAGGGAGAGGGTGCGTGTG 62.302 68.421 0.00 0.00 0.00 3.82
3238 6217 2.997897 GAGGGAGAGGGTGCGTGT 60.998 66.667 0.00 0.00 0.00 4.49
3239 6218 3.775654 GGAGGGAGAGGGTGCGTG 61.776 72.222 0.00 0.00 0.00 5.34
3241 6220 4.787280 AGGGAGGGAGAGGGTGCG 62.787 72.222 0.00 0.00 0.00 5.34
3242 6221 2.766229 GAGGGAGGGAGAGGGTGC 60.766 72.222 0.00 0.00 0.00 5.01
3243 6222 0.689412 GAAGAGGGAGGGAGAGGGTG 60.689 65.000 0.00 0.00 0.00 4.61
3244 6223 1.707200 GAAGAGGGAGGGAGAGGGT 59.293 63.158 0.00 0.00 0.00 4.34
3245 6224 1.074850 GGAAGAGGGAGGGAGAGGG 60.075 68.421 0.00 0.00 0.00 4.30
3246 6225 0.105709 GAGGAAGAGGGAGGGAGAGG 60.106 65.000 0.00 0.00 0.00 3.69
3247 6226 0.633921 TGAGGAAGAGGGAGGGAGAG 59.366 60.000 0.00 0.00 0.00 3.20
3248 6227 0.336737 GTGAGGAAGAGGGAGGGAGA 59.663 60.000 0.00 0.00 0.00 3.71
3249 6228 0.338120 AGTGAGGAAGAGGGAGGGAG 59.662 60.000 0.00 0.00 0.00 4.30
3250 6229 0.336737 GAGTGAGGAAGAGGGAGGGA 59.663 60.000 0.00 0.00 0.00 4.20
3251 6230 0.338120 AGAGTGAGGAAGAGGGAGGG 59.662 60.000 0.00 0.00 0.00 4.30
3252 6231 1.287739 AGAGAGTGAGGAAGAGGGAGG 59.712 57.143 0.00 0.00 0.00 4.30
3253 6232 2.242196 AGAGAGAGTGAGGAAGAGGGAG 59.758 54.545 0.00 0.00 0.00 4.30
3254 6233 2.241176 GAGAGAGAGTGAGGAAGAGGGA 59.759 54.545 0.00 0.00 0.00 4.20
3255 6234 2.654863 GAGAGAGAGTGAGGAAGAGGG 58.345 57.143 0.00 0.00 0.00 4.30
3256 6235 2.654863 GGAGAGAGAGTGAGGAAGAGG 58.345 57.143 0.00 0.00 0.00 3.69
3257 6236 2.242196 AGGGAGAGAGAGTGAGGAAGAG 59.758 54.545 0.00 0.00 0.00 2.85
3258 6237 2.241176 GAGGGAGAGAGAGTGAGGAAGA 59.759 54.545 0.00 0.00 0.00 2.87
3259 6238 2.242196 AGAGGGAGAGAGAGTGAGGAAG 59.758 54.545 0.00 0.00 0.00 3.46
3260 6239 2.241176 GAGAGGGAGAGAGAGTGAGGAA 59.759 54.545 0.00 0.00 0.00 3.36
3261 6240 1.843851 GAGAGGGAGAGAGAGTGAGGA 59.156 57.143 0.00 0.00 0.00 3.71
3262 6241 1.846439 AGAGAGGGAGAGAGAGTGAGG 59.154 57.143 0.00 0.00 0.00 3.86
3263 6242 2.158755 GGAGAGAGGGAGAGAGAGTGAG 60.159 59.091 0.00 0.00 0.00 3.51
3264 6243 1.843851 GGAGAGAGGGAGAGAGAGTGA 59.156 57.143 0.00 0.00 0.00 3.41
3265 6244 1.133792 GGGAGAGAGGGAGAGAGAGTG 60.134 61.905 0.00 0.00 0.00 3.51
3266 6245 1.222567 GGGAGAGAGGGAGAGAGAGT 58.777 60.000 0.00 0.00 0.00 3.24
3267 6246 0.478507 GGGGAGAGAGGGAGAGAGAG 59.521 65.000 0.00 0.00 0.00 3.20
3268 6247 0.996762 GGGGGAGAGAGGGAGAGAGA 60.997 65.000 0.00 0.00 0.00 3.10
3269 6248 0.998945 AGGGGGAGAGAGGGAGAGAG 60.999 65.000 0.00 0.00 0.00 3.20
3270 6249 0.996762 GAGGGGGAGAGAGGGAGAGA 60.997 65.000 0.00 0.00 0.00 3.10
3271 6250 0.998945 AGAGGGGGAGAGAGGGAGAG 60.999 65.000 0.00 0.00 0.00 3.20
3272 6251 0.996762 GAGAGGGGGAGAGAGGGAGA 60.997 65.000 0.00 0.00 0.00 3.71
3273 6252 0.998945 AGAGAGGGGGAGAGAGGGAG 60.999 65.000 0.00 0.00 0.00 4.30
3274 6253 0.996762 GAGAGAGGGGGAGAGAGGGA 60.997 65.000 0.00 0.00 0.00 4.20
3275 6254 0.998945 AGAGAGAGGGGGAGAGAGGG 60.999 65.000 0.00 0.00 0.00 4.30
3276 6255 0.478507 GAGAGAGAGGGGGAGAGAGG 59.521 65.000 0.00 0.00 0.00 3.69
3277 6256 1.522900 AGAGAGAGAGGGGGAGAGAG 58.477 60.000 0.00 0.00 0.00 3.20
3278 6257 2.781174 GTTAGAGAGAGAGGGGGAGAGA 59.219 54.545 0.00 0.00 0.00 3.10
3279 6258 2.512056 TGTTAGAGAGAGAGGGGGAGAG 59.488 54.545 0.00 0.00 0.00 3.20
3280 6259 2.242708 GTGTTAGAGAGAGAGGGGGAGA 59.757 54.545 0.00 0.00 0.00 3.71
3281 6260 2.024846 TGTGTTAGAGAGAGAGGGGGAG 60.025 54.545 0.00 0.00 0.00 4.30
3282 6261 2.000803 TGTGTTAGAGAGAGAGGGGGA 58.999 52.381 0.00 0.00 0.00 4.81
3283 6262 2.104170 GTGTGTTAGAGAGAGAGGGGG 58.896 57.143 0.00 0.00 0.00 5.40
3284 6263 2.494073 GTGTGTGTTAGAGAGAGAGGGG 59.506 54.545 0.00 0.00 0.00 4.79
3285 6264 3.157881 TGTGTGTGTTAGAGAGAGAGGG 58.842 50.000 0.00 0.00 0.00 4.30
3286 6265 6.238897 GGATATGTGTGTGTTAGAGAGAGAGG 60.239 46.154 0.00 0.00 0.00 3.69
3287 6266 6.319911 TGGATATGTGTGTGTTAGAGAGAGAG 59.680 42.308 0.00 0.00 0.00 3.20
3288 6267 6.187682 TGGATATGTGTGTGTTAGAGAGAGA 58.812 40.000 0.00 0.00 0.00 3.10
3289 6268 6.456795 TGGATATGTGTGTGTTAGAGAGAG 57.543 41.667 0.00 0.00 0.00 3.20
3290 6269 6.836007 AGATGGATATGTGTGTGTTAGAGAGA 59.164 38.462 0.00 0.00 0.00 3.10
3291 6270 7.048629 AGATGGATATGTGTGTGTTAGAGAG 57.951 40.000 0.00 0.00 0.00 3.20
3292 6271 7.423844 AAGATGGATATGTGTGTGTTAGAGA 57.576 36.000 0.00 0.00 0.00 3.10
3293 6272 9.416794 GATAAGATGGATATGTGTGTGTTAGAG 57.583 37.037 0.00 0.00 0.00 2.43
3294 6273 8.923270 TGATAAGATGGATATGTGTGTGTTAGA 58.077 33.333 0.00 0.00 0.00 2.10
3295 6274 8.982685 GTGATAAGATGGATATGTGTGTGTTAG 58.017 37.037 0.00 0.00 0.00 2.34
3296 6275 8.704668 AGTGATAAGATGGATATGTGTGTGTTA 58.295 33.333 0.00 0.00 0.00 2.41
3297 6276 7.568349 AGTGATAAGATGGATATGTGTGTGTT 58.432 34.615 0.00 0.00 0.00 3.32
3298 6277 7.129457 AGTGATAAGATGGATATGTGTGTGT 57.871 36.000 0.00 0.00 0.00 3.72
3299 6278 7.930325 AGAAGTGATAAGATGGATATGTGTGTG 59.070 37.037 0.00 0.00 0.00 3.82
3300 6279 7.930325 CAGAAGTGATAAGATGGATATGTGTGT 59.070 37.037 0.00 0.00 0.00 3.72
3301 6280 7.095313 GCAGAAGTGATAAGATGGATATGTGTG 60.095 40.741 0.00 0.00 0.00 3.82
3302 6281 6.933521 GCAGAAGTGATAAGATGGATATGTGT 59.066 38.462 0.00 0.00 0.00 3.72
3303 6282 6.370994 GGCAGAAGTGATAAGATGGATATGTG 59.629 42.308 0.00 0.00 0.00 3.21
3304 6283 6.271857 AGGCAGAAGTGATAAGATGGATATGT 59.728 38.462 0.00 0.00 0.00 2.29
3305 6284 6.709281 AGGCAGAAGTGATAAGATGGATATG 58.291 40.000 0.00 0.00 0.00 1.78
3306 6285 6.350864 CGAGGCAGAAGTGATAAGATGGATAT 60.351 42.308 0.00 0.00 0.00 1.63
3307 6286 5.047731 CGAGGCAGAAGTGATAAGATGGATA 60.048 44.000 0.00 0.00 0.00 2.59
3308 6287 4.262377 CGAGGCAGAAGTGATAAGATGGAT 60.262 45.833 0.00 0.00 0.00 3.41
3309 6288 3.068732 CGAGGCAGAAGTGATAAGATGGA 59.931 47.826 0.00 0.00 0.00 3.41
3310 6289 3.388308 CGAGGCAGAAGTGATAAGATGG 58.612 50.000 0.00 0.00 0.00 3.51
3311 6290 3.181471 ACCGAGGCAGAAGTGATAAGATG 60.181 47.826 0.00 0.00 0.00 2.90
3312 6291 3.034635 ACCGAGGCAGAAGTGATAAGAT 58.965 45.455 0.00 0.00 0.00 2.40
3313 6292 2.457598 ACCGAGGCAGAAGTGATAAGA 58.542 47.619 0.00 0.00 0.00 2.10
3314 6293 2.969628 ACCGAGGCAGAAGTGATAAG 57.030 50.000 0.00 0.00 0.00 1.73
3315 6294 3.093814 TGTACCGAGGCAGAAGTGATAA 58.906 45.455 0.00 0.00 0.00 1.75
3316 6295 2.426024 GTGTACCGAGGCAGAAGTGATA 59.574 50.000 0.00 0.00 0.00 2.15
3328 6307 2.564062 TGTTTAAGGAGGGTGTACCGAG 59.436 50.000 0.00 0.00 46.96 4.63
3444 6452 2.103538 CCGTATACACAGGCGCGT 59.896 61.111 8.43 0.00 0.00 6.01
3794 6809 4.222589 CACGCGCGGCAATCGAAT 62.223 61.111 35.22 6.31 42.43 3.34



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.