Multiple sequence alignment - TraesCS4A01G126400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G126400 chr4A 100.000 2450 0 0 1 2450 162812498 162814947 0.000000e+00 4525.0
1 TraesCS4A01G126400 chr4A 84.016 244 30 7 2028 2262 60655260 60655503 2.450000e-55 226.0
2 TraesCS4A01G126400 chr4A 88.298 188 21 1 2087 2273 38632498 38632311 8.820000e-55 224.0
3 TraesCS4A01G126400 chr4D 92.410 1357 58 10 644 1988 313886644 313885321 0.000000e+00 1893.0
4 TraesCS4A01G126400 chr4D 93.633 267 15 1 146 410 313887248 313886982 4.910000e-107 398.0
5 TraesCS4A01G126400 chr4D 90.393 229 8 1 430 644 313886914 313886686 3.080000e-74 289.0
6 TraesCS4A01G126400 chr4D 83.740 246 32 5 2028 2265 199947513 199947268 2.450000e-55 226.0
7 TraesCS4A01G126400 chr4D 90.286 175 12 3 2279 2449 313883326 313883153 8.820000e-55 224.0
8 TraesCS4A01G126400 chr4D 93.182 44 2 1 1973 2015 468268484 468268527 2.030000e-06 63.9
9 TraesCS4A01G126400 chr4B 93.065 1067 38 9 642 1695 391157669 391158712 0.000000e+00 1528.0
10 TraesCS4A01G126400 chr4B 83.831 569 25 15 123 644 391157094 391157642 1.700000e-131 479.0
11 TraesCS4A01G126400 chr4B 84.706 425 50 9 2039 2450 391161712 391162134 6.310000e-111 411.0
12 TraesCS4A01G126400 chr4B 83.918 342 42 5 1693 2032 391160798 391161128 5.090000e-82 315.0
13 TraesCS4A01G126400 chr5D 85.214 257 27 7 2028 2274 67716217 67716472 1.120000e-63 254.0
14 TraesCS4A01G126400 chr3D 84.766 256 30 6 2028 2274 445944211 445944466 5.230000e-62 248.0
15 TraesCS4A01G126400 chr3D 96.875 32 1 0 1065 1096 504003838 504003807 1.000000e-03 54.7
16 TraesCS4A01G126400 chr5A 83.721 258 28 11 2028 2274 314319861 314320115 5.270000e-57 231.0
17 TraesCS4A01G126400 chr5A 83.146 89 12 3 1888 1974 554642646 554642733 7.260000e-11 78.7
18 TraesCS4A01G126400 chr5A 97.368 38 1 0 1983 2020 400881730 400881693 5.650000e-07 65.8
19 TraesCS4A01G126400 chr2D 84.615 234 29 5 2048 2274 75909638 75909405 2.450000e-55 226.0
20 TraesCS4A01G126400 chr3A 84.052 232 32 3 2048 2274 440994273 440994504 4.100000e-53 219.0
21 TraesCS4A01G126400 chr3A 92.157 51 4 0 1982 2032 722390040 722389990 3.380000e-09 73.1
22 TraesCS4A01G126400 chr1A 81.673 251 29 13 2025 2265 22897138 22896895 2.490000e-45 193.0
23 TraesCS4A01G126400 chr1A 92.453 53 3 1 1980 2031 463815178 463815230 9.400000e-10 75.0
24 TraesCS4A01G126400 chr1A 83.077 65 10 1 1778 1841 478254698 478254762 9.460000e-05 58.4
25 TraesCS4A01G126400 chr3B 80.335 239 44 3 1734 1970 492606928 492607165 6.960000e-41 178.0
26 TraesCS4A01G126400 chr3B 85.714 133 12 6 1838 1970 293741071 293740946 1.530000e-27 134.0
27 TraesCS4A01G126400 chr7A 80.851 235 33 7 1743 1970 519170887 519171116 9.010000e-40 174.0
28 TraesCS4A01G126400 chr7A 92.157 51 4 0 1982 2032 127583185 127583235 3.380000e-09 73.1
29 TraesCS4A01G126400 chr7A 80.000 85 15 2 1743 1826 148929474 148929391 7.320000e-06 62.1
30 TraesCS4A01G126400 chr6A 92.593 54 3 1 1980 2032 65535894 65535947 2.610000e-10 76.8
31 TraesCS4A01G126400 chr2B 90.566 53 4 1 1980 2031 495441676 495441624 4.370000e-08 69.4
32 TraesCS4A01G126400 chr1B 93.617 47 2 1 1980 2025 513310854 513310808 4.370000e-08 69.4
33 TraesCS4A01G126400 chr7B 95.238 42 2 0 1984 2025 561554808 561554849 1.570000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G126400 chr4A 162812498 162814947 2449 False 4525.00 4525 100.0000 1 2450 1 chr4A.!!$F2 2449
1 TraesCS4A01G126400 chr4D 313883153 313887248 4095 True 701.00 1893 91.6805 146 2449 4 chr4D.!!$R2 2303
2 TraesCS4A01G126400 chr4B 391157094 391162134 5040 False 683.25 1528 86.3800 123 2450 4 chr4B.!!$F1 2327

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
966 1120 0.096628 CTTCGTCTCATTGCTGCTGC 59.903 55.0 8.89 8.89 40.2 5.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2226 5050 1.211703 TGGTGTTGATGGTGTGTCTGT 59.788 47.619 0.0 0.0 0.0 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.957684 ATCTAATTAACTAGTGGCGCCT 57.042 40.909 29.70 11.31 0.00 5.52
22 23 4.317671 TCTAATTAACTAGTGGCGCCTC 57.682 45.455 29.70 25.08 0.00 4.70
23 24 3.958798 TCTAATTAACTAGTGGCGCCTCT 59.041 43.478 31.57 31.57 0.00 3.69
24 25 3.629142 AATTAACTAGTGGCGCCTCTT 57.371 42.857 33.65 19.68 0.00 2.85
25 26 2.380084 TTAACTAGTGGCGCCTCTTG 57.620 50.000 33.65 31.49 0.00 3.02
26 27 1.552578 TAACTAGTGGCGCCTCTTGA 58.447 50.000 35.30 20.42 0.00 3.02
27 28 0.685097 AACTAGTGGCGCCTCTTGAA 59.315 50.000 35.30 19.78 0.00 2.69
28 29 0.685097 ACTAGTGGCGCCTCTTGAAA 59.315 50.000 35.30 19.46 0.00 2.69
29 30 1.279271 ACTAGTGGCGCCTCTTGAAAT 59.721 47.619 35.30 17.91 0.00 2.17
30 31 2.290323 ACTAGTGGCGCCTCTTGAAATT 60.290 45.455 35.30 17.61 0.00 1.82
31 32 2.489938 AGTGGCGCCTCTTGAAATTA 57.510 45.000 29.70 0.00 0.00 1.40
32 33 2.359900 AGTGGCGCCTCTTGAAATTAG 58.640 47.619 29.70 0.00 0.00 1.73
33 34 2.027192 AGTGGCGCCTCTTGAAATTAGA 60.027 45.455 29.70 0.00 0.00 2.10
34 35 2.096013 GTGGCGCCTCTTGAAATTAGAC 59.904 50.000 29.70 8.60 0.00 2.59
35 36 2.027192 TGGCGCCTCTTGAAATTAGACT 60.027 45.455 29.70 0.00 0.00 3.24
36 37 2.352960 GGCGCCTCTTGAAATTAGACTG 59.647 50.000 22.15 0.00 0.00 3.51
37 38 3.262420 GCGCCTCTTGAAATTAGACTGA 58.738 45.455 0.00 0.00 0.00 3.41
38 39 3.308323 GCGCCTCTTGAAATTAGACTGAG 59.692 47.826 0.00 0.00 0.00 3.35
39 40 4.499183 CGCCTCTTGAAATTAGACTGAGT 58.501 43.478 0.00 0.00 0.00 3.41
40 41 4.932200 CGCCTCTTGAAATTAGACTGAGTT 59.068 41.667 0.00 0.00 0.00 3.01
41 42 5.062809 CGCCTCTTGAAATTAGACTGAGTTC 59.937 44.000 0.83 0.83 0.00 3.01
42 43 5.062809 GCCTCTTGAAATTAGACTGAGTTCG 59.937 44.000 3.41 0.00 0.00 3.95
43 44 6.390721 CCTCTTGAAATTAGACTGAGTTCGA 58.609 40.000 3.41 0.90 0.00 3.71
44 45 6.868864 CCTCTTGAAATTAGACTGAGTTCGAA 59.131 38.462 0.00 0.00 0.00 3.71
45 46 7.547370 CCTCTTGAAATTAGACTGAGTTCGAAT 59.453 37.037 0.00 0.00 0.00 3.34
46 47 8.833231 TCTTGAAATTAGACTGAGTTCGAATT 57.167 30.769 0.00 0.00 33.68 2.17
47 48 9.273016 TCTTGAAATTAGACTGAGTTCGAATTT 57.727 29.630 0.00 10.73 41.03 1.82
48 49 9.322776 CTTGAAATTAGACTGAGTTCGAATTTG 57.677 33.333 13.95 0.00 39.48 2.32
49 50 7.806690 TGAAATTAGACTGAGTTCGAATTTGG 58.193 34.615 13.95 0.00 39.48 3.28
50 51 7.444183 TGAAATTAGACTGAGTTCGAATTTGGT 59.556 33.333 13.95 0.00 39.48 3.67
51 52 8.842358 AAATTAGACTGAGTTCGAATTTGGTA 57.158 30.769 0.00 0.00 38.57 3.25
52 53 8.480643 AATTAGACTGAGTTCGAATTTGGTAG 57.519 34.615 0.00 0.00 29.49 3.18
53 54 4.246458 AGACTGAGTTCGAATTTGGTAGC 58.754 43.478 0.00 0.00 0.00 3.58
54 55 4.021016 AGACTGAGTTCGAATTTGGTAGCT 60.021 41.667 0.00 0.00 0.00 3.32
55 56 5.185249 AGACTGAGTTCGAATTTGGTAGCTA 59.815 40.000 0.00 0.00 0.00 3.32
56 57 5.978814 ACTGAGTTCGAATTTGGTAGCTAT 58.021 37.500 0.00 0.00 0.00 2.97
57 58 7.068348 AGACTGAGTTCGAATTTGGTAGCTATA 59.932 37.037 0.00 0.00 0.00 1.31
58 59 7.553334 ACTGAGTTCGAATTTGGTAGCTATAA 58.447 34.615 0.00 0.00 0.00 0.98
59 60 7.491696 ACTGAGTTCGAATTTGGTAGCTATAAC 59.508 37.037 0.00 0.00 0.00 1.89
60 61 7.324935 TGAGTTCGAATTTGGTAGCTATAACA 58.675 34.615 0.00 0.00 0.00 2.41
61 62 7.985184 TGAGTTCGAATTTGGTAGCTATAACAT 59.015 33.333 0.00 0.00 0.00 2.71
62 63 8.366671 AGTTCGAATTTGGTAGCTATAACATC 57.633 34.615 0.00 0.00 0.00 3.06
63 64 7.985184 AGTTCGAATTTGGTAGCTATAACATCA 59.015 33.333 0.00 0.00 0.00 3.07
64 65 7.946655 TCGAATTTGGTAGCTATAACATCAG 57.053 36.000 0.00 0.00 0.00 2.90
65 66 7.497595 TCGAATTTGGTAGCTATAACATCAGT 58.502 34.615 0.00 0.00 0.00 3.41
66 67 7.652105 TCGAATTTGGTAGCTATAACATCAGTC 59.348 37.037 0.00 0.00 0.00 3.51
67 68 7.653713 CGAATTTGGTAGCTATAACATCAGTCT 59.346 37.037 0.00 0.00 0.00 3.24
68 69 8.668510 AATTTGGTAGCTATAACATCAGTCTG 57.331 34.615 0.00 0.00 0.00 3.51
69 70 7.418337 TTTGGTAGCTATAACATCAGTCTGA 57.582 36.000 4.68 4.68 0.00 3.27
70 71 7.603180 TTGGTAGCTATAACATCAGTCTGAT 57.397 36.000 9.68 9.68 37.65 2.90
84 85 6.737720 TCAGTCTGATGGGGATATATATGC 57.262 41.667 5.70 5.70 0.00 3.14
85 86 5.302823 TCAGTCTGATGGGGATATATATGCG 59.697 44.000 8.01 0.00 0.00 4.73
86 87 4.039730 AGTCTGATGGGGATATATATGCGC 59.960 45.833 20.16 20.16 37.46 6.09
87 88 3.005791 TCTGATGGGGATATATATGCGCG 59.994 47.826 21.07 0.00 39.30 6.86
88 89 2.962421 TGATGGGGATATATATGCGCGA 59.038 45.455 21.07 13.32 39.30 5.87
89 90 3.005791 TGATGGGGATATATATGCGCGAG 59.994 47.826 21.07 0.00 39.30 5.03
90 91 2.661718 TGGGGATATATATGCGCGAGA 58.338 47.619 21.07 6.34 39.30 4.04
91 92 3.230976 TGGGGATATATATGCGCGAGAT 58.769 45.455 21.07 2.70 39.30 2.75
92 93 3.005791 TGGGGATATATATGCGCGAGATG 59.994 47.826 21.07 0.00 39.30 2.90
93 94 3.005897 GGGGATATATATGCGCGAGATGT 59.994 47.826 12.10 1.08 0.00 3.06
94 95 4.217767 GGGGATATATATGCGCGAGATGTA 59.782 45.833 12.10 3.70 0.00 2.29
95 96 5.394802 GGGATATATATGCGCGAGATGTAG 58.605 45.833 12.10 0.00 0.00 2.74
96 97 5.394802 GGATATATATGCGCGAGATGTAGG 58.605 45.833 12.10 0.00 0.00 3.18
97 98 3.717400 ATATATGCGCGAGATGTAGGG 57.283 47.619 12.10 0.00 0.00 3.53
98 99 1.257743 ATATGCGCGAGATGTAGGGT 58.742 50.000 12.10 0.00 0.00 4.34
99 100 0.313987 TATGCGCGAGATGTAGGGTG 59.686 55.000 12.10 0.00 0.00 4.61
100 101 1.391933 ATGCGCGAGATGTAGGGTGA 61.392 55.000 12.10 0.00 0.00 4.02
101 102 1.299468 GCGCGAGATGTAGGGTGAG 60.299 63.158 12.10 0.00 0.00 3.51
102 103 1.360551 CGCGAGATGTAGGGTGAGG 59.639 63.158 0.00 0.00 0.00 3.86
103 104 1.384989 CGCGAGATGTAGGGTGAGGT 61.385 60.000 0.00 0.00 0.00 3.85
104 105 0.103208 GCGAGATGTAGGGTGAGGTG 59.897 60.000 0.00 0.00 0.00 4.00
105 106 0.103208 CGAGATGTAGGGTGAGGTGC 59.897 60.000 0.00 0.00 0.00 5.01
106 107 1.195115 GAGATGTAGGGTGAGGTGCA 58.805 55.000 0.00 0.00 0.00 4.57
107 108 1.137872 GAGATGTAGGGTGAGGTGCAG 59.862 57.143 0.00 0.00 0.00 4.41
108 109 1.195115 GATGTAGGGTGAGGTGCAGA 58.805 55.000 0.00 0.00 0.00 4.26
109 110 1.555075 GATGTAGGGTGAGGTGCAGAA 59.445 52.381 0.00 0.00 0.00 3.02
110 111 0.976641 TGTAGGGTGAGGTGCAGAAG 59.023 55.000 0.00 0.00 0.00 2.85
111 112 0.391793 GTAGGGTGAGGTGCAGAAGC 60.392 60.000 0.00 0.00 42.57 3.86
131 132 5.306114 AGCATTCCCCTACCAATTAGTAC 57.694 43.478 0.00 0.00 0.00 2.73
142 143 8.348507 CCCTACCAATTAGTACTTCGTTACTAG 58.651 40.741 0.00 0.00 31.33 2.57
143 144 7.859875 CCTACCAATTAGTACTTCGTTACTAGC 59.140 40.741 0.00 0.00 31.33 3.42
144 145 6.567959 ACCAATTAGTACTTCGTTACTAGCC 58.432 40.000 0.00 0.00 31.33 3.93
149 156 4.028825 AGTACTTCGTTACTAGCCCCATT 58.971 43.478 0.00 0.00 0.00 3.16
154 161 3.101437 TCGTTACTAGCCCCATTCTGAA 58.899 45.455 0.00 0.00 0.00 3.02
162 169 1.970640 GCCCCATTCTGAAACAACCTT 59.029 47.619 0.00 0.00 0.00 3.50
164 171 3.769300 GCCCCATTCTGAAACAACCTTAT 59.231 43.478 0.00 0.00 0.00 1.73
212 219 3.992943 AAATTCAGACGTGTATCCCCA 57.007 42.857 0.00 0.00 0.00 4.96
228 255 3.915575 CATGGTCTGGAAGCAGGC 58.084 61.111 0.00 0.00 39.11 4.85
229 256 1.001764 CATGGTCTGGAAGCAGGCA 60.002 57.895 0.00 0.00 39.11 4.75
230 257 1.001641 ATGGTCTGGAAGCAGGCAC 60.002 57.895 0.00 0.00 39.11 5.01
231 258 1.495579 ATGGTCTGGAAGCAGGCACT 61.496 55.000 0.00 0.00 39.11 4.40
232 259 1.073897 GGTCTGGAAGCAGGCACTT 59.926 57.895 0.00 0.00 34.60 3.16
233 260 0.538287 GGTCTGGAAGCAGGCACTTT 60.538 55.000 0.00 0.00 34.60 2.66
234 261 0.877743 GTCTGGAAGCAGGCACTTTC 59.122 55.000 0.00 0.00 34.60 2.62
235 262 0.250901 TCTGGAAGCAGGCACTTTCC 60.251 55.000 4.36 4.36 34.60 3.13
236 263 0.251077 CTGGAAGCAGGCACTTTCCT 60.251 55.000 10.82 0.00 34.60 3.36
256 283 0.958822 GCCACGGGAAAATTCACACT 59.041 50.000 0.00 0.00 0.00 3.55
392 421 1.815421 GACCGCCGAGATGTTGCAT 60.815 57.895 0.00 0.00 0.00 3.96
410 439 2.036346 GCATGGTTTGAACTGAAAGGCT 59.964 45.455 0.00 0.00 39.30 4.58
412 441 4.261994 GCATGGTTTGAACTGAAAGGCTAA 60.262 41.667 0.00 0.00 39.30 3.09
413 442 5.567423 GCATGGTTTGAACTGAAAGGCTAAT 60.567 40.000 0.00 0.00 39.30 1.73
414 443 6.350110 GCATGGTTTGAACTGAAAGGCTAATA 60.350 38.462 0.00 0.00 39.30 0.98
437 484 3.775316 CACCCCCTTTCAGATACACTAGT 59.225 47.826 0.00 0.00 0.00 2.57
438 485 3.775316 ACCCCCTTTCAGATACACTAGTG 59.225 47.826 21.44 21.44 0.00 2.74
439 486 3.432326 CCCCCTTTCAGATACACTAGTGC 60.432 52.174 22.90 6.83 0.00 4.40
450 527 6.015856 CAGATACACTAGTGCTACAAGCCTAT 60.016 42.308 22.90 9.37 41.51 2.57
546 641 0.247736 CCAGGAACCTTCACCTCTCG 59.752 60.000 0.00 0.00 33.91 4.04
557 656 3.238108 TCACCTCTCGCTCTCAAAATC 57.762 47.619 0.00 0.00 0.00 2.17
602 701 1.609208 CCACTCACCAACTTTCCCAG 58.391 55.000 0.00 0.00 0.00 4.45
673 814 1.512230 CCCATGTGCCACAATTCGG 59.488 57.895 0.00 0.12 0.00 4.30
829 970 1.515081 GCCGCGCAACCCTATATAAA 58.485 50.000 8.75 0.00 0.00 1.40
924 1068 0.869454 GATCGCTCAGTCCGCTTCAG 60.869 60.000 0.00 0.00 0.00 3.02
966 1120 0.096628 CTTCGTCTCATTGCTGCTGC 59.903 55.000 8.89 8.89 40.20 5.25
967 1121 0.321034 TTCGTCTCATTGCTGCTGCT 60.321 50.000 17.00 0.00 40.48 4.24
968 1122 1.017701 TCGTCTCATTGCTGCTGCTG 61.018 55.000 17.00 7.75 40.48 4.41
969 1123 1.136984 GTCTCATTGCTGCTGCTGC 59.863 57.895 22.51 22.51 40.48 5.25
970 1124 1.002502 TCTCATTGCTGCTGCTGCT 60.003 52.632 27.67 9.87 40.48 4.24
971 1125 1.137614 CTCATTGCTGCTGCTGCTG 59.862 57.895 27.67 19.87 40.48 4.41
980 1134 3.020026 GCTGCTGCTGCTGTACGTG 62.020 63.158 22.10 3.65 39.81 4.49
1242 1396 1.443322 GCGTCCCGTCCTACTACTCC 61.443 65.000 0.00 0.00 0.00 3.85
1245 1399 0.842635 TCCCGTCCTACTACTCCTCC 59.157 60.000 0.00 0.00 0.00 4.30
1498 1652 3.585990 CGGTTCGGCATGCCATCC 61.586 66.667 34.93 28.42 35.37 3.51
1758 4000 7.671495 TTGGATCATGATAAATATCACACGG 57.329 36.000 8.54 0.00 44.66 4.94
1763 4005 4.764050 TGATAAATATCACACGGGTGGT 57.236 40.909 19.60 14.77 45.32 4.16
1776 4018 2.104451 ACGGGTGGTACAAACACATACA 59.896 45.455 0.00 0.00 44.16 2.29
1817 4060 5.790593 TGGTAAGTTTAGTGATGTGAGGAC 58.209 41.667 0.00 0.00 0.00 3.85
1819 4062 3.594603 AGTTTAGTGATGTGAGGACGG 57.405 47.619 0.00 0.00 0.00 4.79
1849 4092 3.540314 TGTCAAGCATGGCAACTTTTT 57.460 38.095 0.00 0.00 38.47 1.94
1942 4185 4.020617 CAGGGCCGGAGTGCTTCA 62.021 66.667 5.05 0.00 0.00 3.02
1951 4194 0.890542 GGAGTGCTTCATGCCACACA 60.891 55.000 12.38 0.00 42.00 3.72
1972 4215 4.082300 ACATGCGGCACTTATCATTTGAAA 60.082 37.500 4.03 0.00 0.00 2.69
1980 4223 8.920665 CGGCACTTATCATTTGAAATTGTTTTA 58.079 29.630 0.00 0.00 0.00 1.52
2002 4246 0.790207 ACTAGCAATGTGTTCGTGCG 59.210 50.000 0.00 0.00 0.00 5.34
2022 4266 3.907894 GTTGCAACGGATCCAAAGTAA 57.092 42.857 14.90 3.21 0.00 2.24
2032 4276 6.905578 ACGGATCCAAAGTAAAACAATACAC 58.094 36.000 13.41 0.00 0.00 2.90
2033 4277 6.713450 ACGGATCCAAAGTAAAACAATACACT 59.287 34.615 13.41 0.00 0.00 3.55
2034 4278 7.879160 ACGGATCCAAAGTAAAACAATACACTA 59.121 33.333 13.41 0.00 0.00 2.74
2035 4279 8.723311 CGGATCCAAAGTAAAACAATACACTAA 58.277 33.333 13.41 0.00 0.00 2.24
2101 4924 4.853468 TTTTATGTGAGGCAGGGATGTA 57.147 40.909 0.00 0.00 0.00 2.29
2106 4929 0.253044 TGAGGCAGGGATGTAGTTGC 59.747 55.000 0.00 0.00 35.87 4.17
2113 4936 3.255642 GCAGGGATGTAGTTGCTTTCAAA 59.744 43.478 0.00 0.00 33.37 2.69
2130 4954 9.357161 TGCTTTCAAAATACTAAGGGTTTTCTA 57.643 29.630 0.00 0.00 0.00 2.10
2161 4985 4.362677 AGCAGAGAAGTGGGGTCTTATTA 58.637 43.478 0.00 0.00 0.00 0.98
2190 5014 3.070878 TGTCACAGCTTACCTCACAATCA 59.929 43.478 0.00 0.00 0.00 2.57
2192 5016 4.331168 GTCACAGCTTACCTCACAATCATC 59.669 45.833 0.00 0.00 0.00 2.92
2198 5022 4.697514 CTTACCTCACAATCATCGGATGT 58.302 43.478 17.01 2.95 32.92 3.06
2212 5036 2.814336 TCGGATGTAGATCTGATGGTCG 59.186 50.000 7.29 2.92 38.81 4.79
2226 5050 0.899019 TGGTCGGAAATGACGGATGA 59.101 50.000 0.00 0.00 39.83 2.92
2241 5065 2.612721 CGGATGACAGACACACCATCAA 60.613 50.000 0.00 0.00 37.67 2.57
2249 5073 2.020720 GACACACCATCAACACCAACA 58.979 47.619 0.00 0.00 0.00 3.33
2262 5086 9.180678 CATCAACACCAACAAAGTCTTTTATAC 57.819 33.333 0.00 0.00 0.00 1.47
2265 5097 6.951643 ACACCAACAAAGTCTTTTATACGAC 58.048 36.000 0.00 0.00 0.00 4.34
2277 5109 9.709495 AGTCTTTTATACGACTAGAGATACGAT 57.291 33.333 0.00 0.00 38.63 3.73
2344 6945 8.674263 TGCTCCATTTGTTTCATAATTTTTGT 57.326 26.923 0.00 0.00 0.00 2.83
2346 6947 8.772705 GCTCCATTTGTTTCATAATTTTTGTCA 58.227 29.630 0.00 0.00 0.00 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.589374 AGAGGCGCCACTAGTTAATTAGAT 59.411 41.667 31.54 0.06 0.00 1.98
1 2 3.958798 AGAGGCGCCACTAGTTAATTAGA 59.041 43.478 31.54 0.00 0.00 2.10
2 3 4.323553 AGAGGCGCCACTAGTTAATTAG 57.676 45.455 31.54 3.60 0.00 1.73
3 4 4.160814 TCAAGAGGCGCCACTAGTTAATTA 59.839 41.667 31.54 0.00 0.00 1.40
4 5 3.055385 TCAAGAGGCGCCACTAGTTAATT 60.055 43.478 31.54 7.79 0.00 1.40
5 6 2.500098 TCAAGAGGCGCCACTAGTTAAT 59.500 45.455 31.54 8.62 0.00 1.40
6 7 1.897133 TCAAGAGGCGCCACTAGTTAA 59.103 47.619 31.54 9.21 0.00 2.01
7 8 1.552578 TCAAGAGGCGCCACTAGTTA 58.447 50.000 31.54 11.05 0.00 2.24
8 9 0.685097 TTCAAGAGGCGCCACTAGTT 59.315 50.000 31.54 10.32 0.00 2.24
9 10 0.685097 TTTCAAGAGGCGCCACTAGT 59.315 50.000 31.54 11.17 0.00 2.57
10 11 2.029838 ATTTCAAGAGGCGCCACTAG 57.970 50.000 31.54 15.92 0.00 2.57
11 12 2.489938 AATTTCAAGAGGCGCCACTA 57.510 45.000 31.54 13.28 0.00 2.74
12 13 2.027192 TCTAATTTCAAGAGGCGCCACT 60.027 45.455 31.54 26.50 0.00 4.00
13 14 2.096013 GTCTAATTTCAAGAGGCGCCAC 59.904 50.000 31.54 24.27 0.00 5.01
14 15 2.027192 AGTCTAATTTCAAGAGGCGCCA 60.027 45.455 31.54 5.89 0.00 5.69
15 16 2.352960 CAGTCTAATTTCAAGAGGCGCC 59.647 50.000 21.89 21.89 0.00 6.53
16 17 3.262420 TCAGTCTAATTTCAAGAGGCGC 58.738 45.455 0.00 0.00 0.00 6.53
17 18 4.499183 ACTCAGTCTAATTTCAAGAGGCG 58.501 43.478 0.00 0.00 0.00 5.52
18 19 5.062809 CGAACTCAGTCTAATTTCAAGAGGC 59.937 44.000 0.00 0.00 0.00 4.70
19 20 6.390721 TCGAACTCAGTCTAATTTCAAGAGG 58.609 40.000 0.00 0.00 0.00 3.69
20 21 7.875316 TTCGAACTCAGTCTAATTTCAAGAG 57.125 36.000 0.00 0.00 0.00 2.85
21 22 8.833231 AATTCGAACTCAGTCTAATTTCAAGA 57.167 30.769 0.00 0.00 0.00 3.02
22 23 9.322776 CAAATTCGAACTCAGTCTAATTTCAAG 57.677 33.333 0.00 0.00 33.17 3.02
23 24 8.289618 CCAAATTCGAACTCAGTCTAATTTCAA 58.710 33.333 0.00 0.00 33.17 2.69
24 25 7.444183 ACCAAATTCGAACTCAGTCTAATTTCA 59.556 33.333 0.00 0.00 33.17 2.69
25 26 7.807680 ACCAAATTCGAACTCAGTCTAATTTC 58.192 34.615 0.00 0.00 33.17 2.17
26 27 7.745620 ACCAAATTCGAACTCAGTCTAATTT 57.254 32.000 0.00 0.00 34.80 1.82
27 28 7.064728 GCTACCAAATTCGAACTCAGTCTAATT 59.935 37.037 0.00 0.00 0.00 1.40
28 29 6.535508 GCTACCAAATTCGAACTCAGTCTAAT 59.464 38.462 0.00 0.00 0.00 1.73
29 30 5.867716 GCTACCAAATTCGAACTCAGTCTAA 59.132 40.000 0.00 0.00 0.00 2.10
30 31 5.185249 AGCTACCAAATTCGAACTCAGTCTA 59.815 40.000 0.00 0.00 0.00 2.59
31 32 4.021016 AGCTACCAAATTCGAACTCAGTCT 60.021 41.667 0.00 0.00 0.00 3.24
32 33 4.246458 AGCTACCAAATTCGAACTCAGTC 58.754 43.478 0.00 0.00 0.00 3.51
33 34 4.273148 AGCTACCAAATTCGAACTCAGT 57.727 40.909 0.00 0.00 0.00 3.41
34 35 7.491372 TGTTATAGCTACCAAATTCGAACTCAG 59.509 37.037 0.00 0.00 0.00 3.35
35 36 7.324935 TGTTATAGCTACCAAATTCGAACTCA 58.675 34.615 0.00 0.00 0.00 3.41
36 37 7.766219 TGTTATAGCTACCAAATTCGAACTC 57.234 36.000 0.00 0.00 0.00 3.01
37 38 7.985184 TGATGTTATAGCTACCAAATTCGAACT 59.015 33.333 0.00 0.00 0.00 3.01
38 39 8.138365 TGATGTTATAGCTACCAAATTCGAAC 57.862 34.615 0.00 0.00 0.00 3.95
39 40 7.985184 ACTGATGTTATAGCTACCAAATTCGAA 59.015 33.333 0.00 0.00 0.00 3.71
40 41 7.497595 ACTGATGTTATAGCTACCAAATTCGA 58.502 34.615 0.00 0.00 0.00 3.71
41 42 7.653713 AGACTGATGTTATAGCTACCAAATTCG 59.346 37.037 0.00 0.00 0.00 3.34
42 43 8.768955 CAGACTGATGTTATAGCTACCAAATTC 58.231 37.037 0.00 0.00 0.00 2.17
43 44 8.486210 TCAGACTGATGTTATAGCTACCAAATT 58.514 33.333 0.00 0.00 0.00 1.82
44 45 8.023021 TCAGACTGATGTTATAGCTACCAAAT 57.977 34.615 0.00 0.00 0.00 2.32
45 46 7.418337 TCAGACTGATGTTATAGCTACCAAA 57.582 36.000 0.00 0.00 0.00 3.28
46 47 7.436933 CATCAGACTGATGTTATAGCTACCAA 58.563 38.462 29.74 0.00 46.80 3.67
47 48 6.986250 CATCAGACTGATGTTATAGCTACCA 58.014 40.000 29.74 0.00 46.80 3.25
60 61 6.014755 CGCATATATATCCCCATCAGACTGAT 60.015 42.308 12.37 12.37 37.65 2.90
61 62 5.302823 CGCATATATATCCCCATCAGACTGA 59.697 44.000 7.80 7.80 0.00 3.41
62 63 5.536260 CGCATATATATCCCCATCAGACTG 58.464 45.833 0.00 0.00 0.00 3.51
63 64 4.039730 GCGCATATATATCCCCATCAGACT 59.960 45.833 0.30 0.00 0.00 3.24
64 65 4.310769 GCGCATATATATCCCCATCAGAC 58.689 47.826 0.30 0.00 0.00 3.51
65 66 3.005791 CGCGCATATATATCCCCATCAGA 59.994 47.826 8.75 0.00 0.00 3.27
66 67 3.005791 TCGCGCATATATATCCCCATCAG 59.994 47.826 8.75 0.00 0.00 2.90
67 68 2.962421 TCGCGCATATATATCCCCATCA 59.038 45.455 8.75 0.00 0.00 3.07
68 69 3.255888 TCTCGCGCATATATATCCCCATC 59.744 47.826 8.75 0.00 0.00 3.51
69 70 3.230976 TCTCGCGCATATATATCCCCAT 58.769 45.455 8.75 0.00 0.00 4.00
70 71 2.661718 TCTCGCGCATATATATCCCCA 58.338 47.619 8.75 0.00 0.00 4.96
71 72 3.005897 ACATCTCGCGCATATATATCCCC 59.994 47.826 8.75 0.00 0.00 4.81
72 73 4.244425 ACATCTCGCGCATATATATCCC 57.756 45.455 8.75 0.00 0.00 3.85
73 74 5.394802 CCTACATCTCGCGCATATATATCC 58.605 45.833 8.75 0.00 0.00 2.59
74 75 5.048643 ACCCTACATCTCGCGCATATATATC 60.049 44.000 8.75 0.00 0.00 1.63
75 76 4.827835 ACCCTACATCTCGCGCATATATAT 59.172 41.667 8.75 0.00 0.00 0.86
76 77 4.036380 CACCCTACATCTCGCGCATATATA 59.964 45.833 8.75 0.00 0.00 0.86
77 78 3.024547 ACCCTACATCTCGCGCATATAT 58.975 45.455 8.75 0.00 0.00 0.86
78 79 2.163613 CACCCTACATCTCGCGCATATA 59.836 50.000 8.75 0.00 0.00 0.86
79 80 1.067565 CACCCTACATCTCGCGCATAT 60.068 52.381 8.75 0.00 0.00 1.78
80 81 0.313987 CACCCTACATCTCGCGCATA 59.686 55.000 8.75 0.00 0.00 3.14
81 82 1.068083 CACCCTACATCTCGCGCAT 59.932 57.895 8.75 0.00 0.00 4.73
82 83 2.004808 CTCACCCTACATCTCGCGCA 62.005 60.000 8.75 0.00 0.00 6.09
83 84 1.299468 CTCACCCTACATCTCGCGC 60.299 63.158 0.00 0.00 0.00 6.86
84 85 1.360551 CCTCACCCTACATCTCGCG 59.639 63.158 0.00 0.00 0.00 5.87
85 86 0.103208 CACCTCACCCTACATCTCGC 59.897 60.000 0.00 0.00 0.00 5.03
86 87 0.103208 GCACCTCACCCTACATCTCG 59.897 60.000 0.00 0.00 0.00 4.04
87 88 1.137872 CTGCACCTCACCCTACATCTC 59.862 57.143 0.00 0.00 0.00 2.75
88 89 1.198713 CTGCACCTCACCCTACATCT 58.801 55.000 0.00 0.00 0.00 2.90
89 90 1.195115 TCTGCACCTCACCCTACATC 58.805 55.000 0.00 0.00 0.00 3.06
90 91 1.556911 CTTCTGCACCTCACCCTACAT 59.443 52.381 0.00 0.00 0.00 2.29
91 92 0.976641 CTTCTGCACCTCACCCTACA 59.023 55.000 0.00 0.00 0.00 2.74
92 93 0.391793 GCTTCTGCACCTCACCCTAC 60.392 60.000 0.00 0.00 39.41 3.18
93 94 0.835971 TGCTTCTGCACCTCACCCTA 60.836 55.000 0.00 0.00 45.31 3.53
94 95 2.149383 TGCTTCTGCACCTCACCCT 61.149 57.895 0.00 0.00 45.31 4.34
95 96 2.431683 TGCTTCTGCACCTCACCC 59.568 61.111 0.00 0.00 45.31 4.61
104 105 0.255890 TGGTAGGGGAATGCTTCTGC 59.744 55.000 0.00 0.00 40.20 4.26
105 106 2.806945 TTGGTAGGGGAATGCTTCTG 57.193 50.000 0.00 0.00 0.00 3.02
106 107 4.478686 ACTAATTGGTAGGGGAATGCTTCT 59.521 41.667 0.00 0.00 33.68 2.85
107 108 4.793201 ACTAATTGGTAGGGGAATGCTTC 58.207 43.478 0.00 0.00 33.68 3.86
108 109 4.881157 ACTAATTGGTAGGGGAATGCTT 57.119 40.909 0.00 0.00 33.68 3.91
109 110 4.975794 AGTACTAATTGGTAGGGGAATGCT 59.024 41.667 1.33 0.00 33.68 3.79
110 111 5.306114 AGTACTAATTGGTAGGGGAATGC 57.694 43.478 1.33 0.00 33.68 3.56
111 112 5.989777 CGAAGTACTAATTGGTAGGGGAATG 59.010 44.000 1.33 0.00 33.68 2.67
112 113 5.664457 ACGAAGTACTAATTGGTAGGGGAAT 59.336 40.000 1.33 0.00 41.94 3.01
113 114 5.025453 ACGAAGTACTAATTGGTAGGGGAA 58.975 41.667 1.33 0.00 41.94 3.97
114 115 4.613437 ACGAAGTACTAATTGGTAGGGGA 58.387 43.478 1.33 0.00 41.94 4.81
115 116 5.349061 AACGAAGTACTAATTGGTAGGGG 57.651 43.478 1.33 0.00 45.00 4.79
116 117 7.105241 AGTAACGAAGTACTAATTGGTAGGG 57.895 40.000 1.33 0.00 45.00 3.53
117 118 7.859875 GCTAGTAACGAAGTACTAATTGGTAGG 59.140 40.741 1.33 0.00 45.00 3.18
118 119 7.859875 GGCTAGTAACGAAGTACTAATTGGTAG 59.140 40.741 1.33 0.00 45.00 3.18
119 120 7.201821 GGGCTAGTAACGAAGTACTAATTGGTA 60.202 40.741 0.00 0.00 45.00 3.25
120 121 6.406288 GGGCTAGTAACGAAGTACTAATTGGT 60.406 42.308 0.00 0.00 45.00 3.67
121 122 5.981915 GGGCTAGTAACGAAGTACTAATTGG 59.018 44.000 0.00 0.00 45.00 3.16
131 132 3.132289 TCAGAATGGGGCTAGTAACGAAG 59.868 47.826 0.00 0.00 36.16 3.79
142 143 1.632589 AGGTTGTTTCAGAATGGGGC 58.367 50.000 0.00 0.00 36.16 5.80
143 144 6.017109 CGATATAAGGTTGTTTCAGAATGGGG 60.017 42.308 0.00 0.00 36.16 4.96
144 145 6.765989 TCGATATAAGGTTGTTTCAGAATGGG 59.234 38.462 0.00 0.00 36.16 4.00
149 156 9.613428 AATTGATCGATATAAGGTTGTTTCAGA 57.387 29.630 0.00 0.00 0.00 3.27
162 169 8.773645 CACTGCCAGTTTTAATTGATCGATATA 58.226 33.333 0.00 0.00 0.00 0.86
164 171 6.821160 TCACTGCCAGTTTTAATTGATCGATA 59.179 34.615 0.00 0.00 0.00 2.92
212 219 1.001641 GTGCCTGCTTCCAGACCAT 60.002 57.895 0.00 0.00 41.77 3.55
227 254 3.365265 CCCGTGGCAGGAAAGTGC 61.365 66.667 9.09 0.00 43.19 4.40
228 255 0.821711 TTTCCCGTGGCAGGAAAGTG 60.822 55.000 14.90 0.00 46.10 3.16
229 256 1.534697 TTTCCCGTGGCAGGAAAGT 59.465 52.632 14.90 0.00 46.10 2.66
230 257 4.492604 TTTCCCGTGGCAGGAAAG 57.507 55.556 14.90 1.97 46.10 2.62
232 259 1.253100 GAATTTTCCCGTGGCAGGAA 58.747 50.000 9.09 6.43 41.69 3.36
233 260 0.111446 TGAATTTTCCCGTGGCAGGA 59.889 50.000 9.09 0.00 0.00 3.86
234 261 0.243636 GTGAATTTTCCCGTGGCAGG 59.756 55.000 0.00 0.00 0.00 4.85
235 262 0.958091 TGTGAATTTTCCCGTGGCAG 59.042 50.000 0.00 0.00 0.00 4.85
236 263 0.671251 GTGTGAATTTTCCCGTGGCA 59.329 50.000 0.00 0.00 0.00 4.92
237 264 0.958822 AGTGTGAATTTTCCCGTGGC 59.041 50.000 0.00 0.00 0.00 5.01
238 265 2.158841 CGTAGTGTGAATTTTCCCGTGG 59.841 50.000 0.00 0.00 0.00 4.94
239 266 2.158841 CCGTAGTGTGAATTTTCCCGTG 59.841 50.000 0.00 0.00 0.00 4.94
240 267 2.037511 TCCGTAGTGTGAATTTTCCCGT 59.962 45.455 0.00 0.00 0.00 5.28
241 268 2.690786 TCCGTAGTGTGAATTTTCCCG 58.309 47.619 0.00 0.00 0.00 5.14
242 269 3.181500 GCATCCGTAGTGTGAATTTTCCC 60.181 47.826 0.00 0.00 0.00 3.97
243 270 3.438781 TGCATCCGTAGTGTGAATTTTCC 59.561 43.478 0.00 0.00 0.00 3.13
292 319 3.912909 GGCATCGATCGAGATGTCTCTTC 60.913 52.174 23.84 3.93 46.49 2.87
378 407 0.527565 AAACCATGCAACATCTCGGC 59.472 50.000 0.00 0.00 0.00 5.54
392 421 6.016610 GTGTATTAGCCTTTCAGTTCAAACCA 60.017 38.462 0.00 0.00 0.00 3.67
410 439 5.968167 AGTGTATCTGAAAGGGGGTGTATTA 59.032 40.000 0.00 0.00 0.00 0.98
412 441 4.371681 AGTGTATCTGAAAGGGGGTGTAT 58.628 43.478 0.00 0.00 0.00 2.29
413 442 3.798515 AGTGTATCTGAAAGGGGGTGTA 58.201 45.455 0.00 0.00 0.00 2.90
414 443 2.632537 AGTGTATCTGAAAGGGGGTGT 58.367 47.619 0.00 0.00 0.00 4.16
437 484 2.290260 ACTTGTGCATAGGCTTGTAGCA 60.290 45.455 0.00 0.00 44.75 3.49
438 485 2.096496 CACTTGTGCATAGGCTTGTAGC 59.904 50.000 0.00 0.00 41.91 3.58
439 486 3.599343 TCACTTGTGCATAGGCTTGTAG 58.401 45.455 0.00 0.00 41.91 2.74
450 527 1.131504 GACCGTTTGTTCACTTGTGCA 59.868 47.619 0.00 0.00 0.00 4.57
546 641 0.305922 CGCGGGATGATTTTGAGAGC 59.694 55.000 0.00 0.00 0.00 4.09
602 701 4.218478 GCGCATCGTACCGTTGCC 62.218 66.667 0.30 4.11 45.84 4.52
829 970 3.906879 GTTTTGTTGGCGGGGCGT 61.907 61.111 0.00 0.00 0.00 5.68
924 1068 3.982360 GAGAGCGCGCGATGAAGC 61.982 66.667 37.18 16.17 0.00 3.86
966 1120 0.663269 TCGAACACGTACAGCAGCAG 60.663 55.000 0.00 0.00 0.00 4.24
967 1121 0.038618 ATCGAACACGTACAGCAGCA 60.039 50.000 0.00 0.00 0.00 4.41
968 1122 0.640768 GATCGAACACGTACAGCAGC 59.359 55.000 0.00 0.00 0.00 5.25
969 1123 0.907837 CGATCGAACACGTACAGCAG 59.092 55.000 10.26 0.00 0.00 4.24
970 1124 0.518195 TCGATCGAACACGTACAGCA 59.482 50.000 16.99 0.00 0.00 4.41
971 1125 1.181001 CTCGATCGAACACGTACAGC 58.819 55.000 19.92 0.00 0.00 4.40
972 1126 2.800694 TCTCGATCGAACACGTACAG 57.199 50.000 19.92 4.06 0.00 2.74
973 1127 3.120095 ACAATCTCGATCGAACACGTACA 60.120 43.478 19.92 0.00 0.00 2.90
974 1128 3.423571 ACAATCTCGATCGAACACGTAC 58.576 45.455 19.92 0.00 0.00 3.67
980 1134 2.888594 TCCCAACAATCTCGATCGAAC 58.111 47.619 19.92 0.00 0.00 3.95
1092 1246 4.794648 TTGATCCCCTTGCCGCCG 62.795 66.667 0.00 0.00 0.00 6.46
1242 1396 1.152839 GGAGGAGGAGGACGAGGAG 60.153 68.421 0.00 0.00 0.00 3.69
1245 1399 0.841289 AGTAGGAGGAGGAGGACGAG 59.159 60.000 0.00 0.00 0.00 4.18
1436 1590 3.142951 CTCCGATCCTACCAGTAGTCTG 58.857 54.545 4.23 0.00 41.01 3.51
1498 1652 5.066764 TCACACATATGCAAGTGATGGATTG 59.933 40.000 19.92 9.48 40.91 2.67
1635 1789 4.442375 TCTCGAACAACAAAGGCAAAAA 57.558 36.364 0.00 0.00 0.00 1.94
1643 1797 4.315803 GGGAGAAGATCTCGAACAACAAA 58.684 43.478 0.00 0.00 44.28 2.83
1750 3992 1.141254 TGTTTGTACCACCCGTGTGAT 59.859 47.619 0.00 0.00 45.76 3.06
1758 4000 5.278120 GGAGTTTGTATGTGTTTGTACCACC 60.278 44.000 0.00 0.00 31.71 4.61
1763 4005 6.123651 ACCTTGGAGTTTGTATGTGTTTGTA 58.876 36.000 0.00 0.00 0.00 2.41
1797 4040 4.619863 GCCGTCCTCACATCACTAAACTTA 60.620 45.833 0.00 0.00 0.00 2.24
1809 4052 2.811431 CAATTAAGTTGCCGTCCTCACA 59.189 45.455 0.00 0.00 0.00 3.58
1811 4054 3.071479 GACAATTAAGTTGCCGTCCTCA 58.929 45.455 0.00 0.00 41.69 3.86
1817 4060 3.281341 TGCTTGACAATTAAGTTGCCG 57.719 42.857 0.00 0.00 41.69 5.69
1819 4062 3.368843 GCCATGCTTGACAATTAAGTTGC 59.631 43.478 0.22 0.00 41.69 4.17
1849 4092 6.486657 AGATCTTGAAACTTGTCATCCGAAAA 59.513 34.615 0.00 0.00 0.00 2.29
1906 4149 6.015772 GGCCCTGATGTTTTCTACAAGTAAAA 60.016 38.462 0.00 0.00 40.89 1.52
1911 4154 2.420022 CGGCCCTGATGTTTTCTACAAG 59.580 50.000 0.00 0.00 40.89 3.16
1951 4194 4.717233 TTTCAAATGATAAGTGCCGCAT 57.283 36.364 0.00 0.00 0.00 4.73
1954 4197 6.949578 AACAATTTCAAATGATAAGTGCCG 57.050 33.333 0.00 0.00 0.00 5.69
1972 4215 9.554724 CGAACACATTGCTAGTAATAAAACAAT 57.445 29.630 5.69 0.00 0.00 2.71
1980 4223 3.062099 CGCACGAACACATTGCTAGTAAT 59.938 43.478 0.00 0.00 33.90 1.89
2002 4246 3.907894 TTACTTTGGATCCGTTGCAAC 57.092 42.857 19.89 19.89 35.14 4.17
2085 4908 1.278985 CAACTACATCCCTGCCTCACA 59.721 52.381 0.00 0.00 0.00 3.58
2101 4924 7.597288 AACCCTTAGTATTTTGAAAGCAACT 57.403 32.000 0.00 0.00 32.79 3.16
2130 4954 4.530875 CCCACTTCTCTGCTCCAATTTAT 58.469 43.478 0.00 0.00 0.00 1.40
2161 4985 4.887071 TGAGGTAAGCTGTGACATTTTTGT 59.113 37.500 0.00 0.00 0.00 2.83
2190 5014 3.441922 CGACCATCAGATCTACATCCGAT 59.558 47.826 0.00 0.00 0.00 4.18
2192 5016 2.095008 CCGACCATCAGATCTACATCCG 60.095 54.545 0.00 0.00 0.00 4.18
2198 5022 4.261614 CGTCATTTCCGACCATCAGATCTA 60.262 45.833 0.00 0.00 31.91 1.98
2212 5036 2.673368 GTGTCTGTCATCCGTCATTTCC 59.327 50.000 0.00 0.00 0.00 3.13
2226 5050 1.211703 TGGTGTTGATGGTGTGTCTGT 59.788 47.619 0.00 0.00 0.00 3.41
2241 5065 6.764560 AGTCGTATAAAAGACTTTGTTGGTGT 59.235 34.615 0.06 0.00 44.46 4.16
2262 5086 3.666274 AGTGGGATCGTATCTCTAGTCG 58.334 50.000 0.00 0.00 0.00 4.18
2265 5097 6.419791 AGGATTAGTGGGATCGTATCTCTAG 58.580 44.000 0.00 0.00 0.00 2.43
2317 6918 9.384682 CAAAAATTATGAAACAAATGGAGCAAC 57.615 29.630 0.00 0.00 0.00 4.17
2318 6919 9.118300 ACAAAAATTATGAAACAAATGGAGCAA 57.882 25.926 0.00 0.00 0.00 3.91
2344 6945 6.657117 TCCCTTCGTTTCATAATTCATGTTGA 59.343 34.615 0.00 0.00 35.96 3.18
2346 6947 6.659242 ACTCCCTTCGTTTCATAATTCATGTT 59.341 34.615 0.00 0.00 35.96 2.71
2350 6951 9.893634 TTATTACTCCCTTCGTTTCATAATTCA 57.106 29.630 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.