Multiple sequence alignment - TraesCS4A01G126200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G126200 chr4A 100.000 6461 0 0 1 6461 162419365 162412905 0.000000e+00 11932.0
1 TraesCS4A01G126200 chr4D 94.685 3895 158 22 761 4649 314071425 314075276 0.000000e+00 6000.0
2 TraesCS4A01G126200 chr4D 94.632 857 32 7 5616 6461 314077913 314078766 0.000000e+00 1315.0
3 TraesCS4A01G126200 chr4D 93.982 565 24 3 5064 5619 314075850 314076413 0.000000e+00 846.0
4 TraesCS4A01G126200 chr4D 94.085 355 20 1 4688 5041 314075375 314075729 7.370000e-149 538.0
5 TraesCS4A01G126200 chr4D 94.393 321 17 1 121 441 74225935 74226254 5.820000e-135 492.0
6 TraesCS4A01G126200 chr4D 92.308 325 22 2 439 762 314070593 314070915 5.900000e-125 459.0
7 TraesCS4A01G126200 chr4B 96.394 2191 72 4 2491 4675 391549840 391552029 0.000000e+00 3602.0
8 TraesCS4A01G126200 chr4B 93.973 1825 61 22 4673 6461 391552168 391553979 0.000000e+00 2715.0
9 TraesCS4A01G126200 chr4B 87.285 1510 107 41 614 2058 391545471 391546960 0.000000e+00 1646.0
10 TraesCS4A01G126200 chr4B 94.183 361 21 0 2134 2494 391546994 391547354 9.470000e-153 551.0
11 TraesCS4A01G126200 chr4B 88.601 193 12 3 439 631 391545230 391545412 6.520000e-55 226.0
12 TraesCS4A01G126200 chr3A 96.226 318 11 1 126 442 9301355 9301038 2.670000e-143 520.0
13 TraesCS4A01G126200 chr7A 95.312 320 15 0 123 442 106189306 106188987 5.780000e-140 508.0
14 TraesCS4A01G126200 chr7A 91.071 56 4 1 4651 4706 429737706 429737652 2.500000e-09 75.0
15 TraesCS4A01G126200 chr6A 94.654 318 16 1 124 441 129352981 129352665 5.820000e-135 492.0
16 TraesCS4A01G126200 chr6A 93.009 329 21 2 121 448 86014691 86015018 4.530000e-131 479.0
17 TraesCS4A01G126200 chr6A 97.674 43 1 0 4652 4694 34179591 34179549 2.500000e-09 75.0
18 TraesCS4A01G126200 chr5A 94.357 319 18 0 124 442 228895269 228894951 2.090000e-134 490.0
19 TraesCS4A01G126200 chr2D 94.637 317 16 1 123 439 36275429 36275114 2.090000e-134 490.0
20 TraesCS4A01G126200 chr2D 94.340 318 17 1 124 441 42524854 42524538 2.710000e-133 486.0
21 TraesCS4A01G126200 chr2D 97.674 43 1 0 4653 4695 170617926 170617968 2.500000e-09 75.0
22 TraesCS4A01G126200 chr1A 93.769 321 19 1 124 444 121360135 121359816 1.260000e-131 481.0
23 TraesCS4A01G126200 chr7D 91.379 58 4 1 4651 4708 382119519 382119463 1.930000e-10 78.7
24 TraesCS4A01G126200 chr7B 92.308 52 4 0 4657 4708 376356872 376356821 2.500000e-09 75.0
25 TraesCS4A01G126200 chr3D 95.556 45 2 0 4653 4697 370110065 370110021 8.990000e-09 73.1
26 TraesCS4A01G126200 chr2B 93.750 48 3 0 4654 4701 692467703 692467656 8.990000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G126200 chr4A 162412905 162419365 6460 True 11932.0 11932 100.0000 1 6461 1 chr4A.!!$R1 6460
1 TraesCS4A01G126200 chr4D 314070593 314078766 8173 False 1831.6 6000 93.9384 439 6461 5 chr4D.!!$F2 6022
2 TraesCS4A01G126200 chr4B 391545230 391553979 8749 False 1748.0 3602 92.0872 439 6461 5 chr4B.!!$F1 6022

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
99 100 0.109272 CTTCCGACACAAGAGCGCTA 60.109 55.000 11.50 0.00 0.00 4.26 F
286 287 0.321346 GTCACCCCTTTTTGCATGGG 59.679 55.000 0.00 7.40 44.03 4.00 F
292 293 0.321346 CCTTTTTGCATGGGTCCCAC 59.679 55.000 14.57 1.42 35.80 4.61 F
293 294 0.321346 CTTTTTGCATGGGTCCCACC 59.679 55.000 14.57 8.17 35.80 4.61 F
767 845 0.391130 ATGCACGCGTCCTTACACAT 60.391 50.000 9.86 1.67 0.00 3.21 F
768 846 0.601576 TGCACGCGTCCTTACACATT 60.602 50.000 9.86 0.00 0.00 2.71 F
1503 2115 0.950116 GCCTACAGATGATGCTTGCC 59.050 55.000 0.00 0.00 0.00 4.52 F
1587 2199 1.072806 TCAAGTGCTGATCAACTGCCT 59.927 47.619 0.79 0.00 41.66 4.75 F
3101 6245 1.141449 GGCACTTGTGCAGCAAACA 59.859 52.632 24.34 0.00 36.53 2.83 F
3504 6648 1.535462 ACGCAATGTGCAGGTACTTTC 59.465 47.619 0.61 0.00 45.36 2.62 F
4243 7390 0.111061 ATGCAGGTGAAGGTGCTCAA 59.889 50.000 0.00 0.00 40.54 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1082 1685 0.324923 AGGACCGTGGTAGCCATACA 60.325 55.000 0.00 0.00 35.28 2.29 R
1435 2047 1.065701 CTCTGTATTCCGTCACCCTCG 59.934 57.143 0.00 0.00 0.00 4.63 R
1900 2529 1.541147 GAAGCAAACTACTGGCATGCA 59.459 47.619 21.36 4.79 39.42 3.96 R
1901 2530 1.541147 TGAAGCAAACTACTGGCATGC 59.459 47.619 9.90 9.90 37.28 4.06 R
2453 3108 1.399440 CATTCAGCGGGTTGATCACAG 59.601 52.381 0.00 0.00 0.00 3.66 R
2600 5744 2.803451 GACAGGCAGTCACTAGATTCG 58.197 52.381 5.03 0.00 46.77 3.34 R
3276 6420 0.035820 TGGTCACCGGTAGATTTGCC 60.036 55.000 6.87 5.69 0.00 4.52 R
3454 6598 7.699878 ACTTCCTACTCCATAAAGGTTCAAAT 58.300 34.615 0.00 0.00 39.02 2.32 R
4221 7368 1.740025 GAGCACCTTCACCTGCATAAC 59.260 52.381 0.00 0.00 35.73 1.89 R
5189 8581 0.933097 ATGCAGCAGCTAATTCGTCG 59.067 50.000 0.00 0.00 42.74 5.12 R
5943 10854 0.608035 TGGTTCGGAAGGGTGATTGC 60.608 55.000 0.00 0.00 0.00 3.56 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.395426 TTGGTGGATCAATTTATCAGATGC 57.605 37.500 2.21 0.00 0.00 3.91
25 26 4.828939 TGGTGGATCAATTTATCAGATGCC 59.171 41.667 2.21 0.00 30.19 4.40
26 27 4.828939 GGTGGATCAATTTATCAGATGCCA 59.171 41.667 2.21 0.00 30.19 4.92
27 28 5.302568 GGTGGATCAATTTATCAGATGCCAA 59.697 40.000 2.21 0.00 30.19 4.52
28 29 6.211515 GTGGATCAATTTATCAGATGCCAAC 58.788 40.000 2.21 0.00 30.19 3.77
29 30 5.892686 TGGATCAATTTATCAGATGCCAACA 59.107 36.000 2.21 0.00 30.19 3.33
30 31 6.551975 TGGATCAATTTATCAGATGCCAACAT 59.448 34.615 2.21 0.00 39.98 2.71
40 41 2.787994 GATGCCAACATCCCTCATAGG 58.212 52.381 0.00 0.00 45.94 2.57
41 42 1.891933 TGCCAACATCCCTCATAGGA 58.108 50.000 0.00 0.00 37.67 2.94
42 43 2.204463 TGCCAACATCCCTCATAGGAA 58.796 47.619 0.00 0.00 40.04 3.36
43 44 2.580322 TGCCAACATCCCTCATAGGAAA 59.420 45.455 0.00 0.00 40.04 3.13
44 45 3.217626 GCCAACATCCCTCATAGGAAAG 58.782 50.000 0.00 0.00 40.04 2.62
45 46 3.372025 GCCAACATCCCTCATAGGAAAGT 60.372 47.826 0.00 0.00 40.04 2.66
46 47 4.455606 CCAACATCCCTCATAGGAAAGTC 58.544 47.826 0.00 0.00 40.04 3.01
47 48 4.080356 CCAACATCCCTCATAGGAAAGTCA 60.080 45.833 0.00 0.00 40.04 3.41
48 49 5.398353 CCAACATCCCTCATAGGAAAGTCAT 60.398 44.000 0.00 0.00 40.04 3.06
49 50 5.301835 ACATCCCTCATAGGAAAGTCATG 57.698 43.478 0.00 0.00 40.04 3.07
50 51 4.103785 ACATCCCTCATAGGAAAGTCATGG 59.896 45.833 0.00 0.00 40.04 3.66
51 52 3.736094 TCCCTCATAGGAAAGTCATGGT 58.264 45.455 0.00 0.00 37.67 3.55
52 53 3.711704 TCCCTCATAGGAAAGTCATGGTC 59.288 47.826 0.00 0.00 37.67 4.02
53 54 3.713764 CCCTCATAGGAAAGTCATGGTCT 59.286 47.826 0.00 0.00 37.67 3.85
54 55 4.444022 CCCTCATAGGAAAGTCATGGTCTG 60.444 50.000 0.00 0.00 37.67 3.51
55 56 4.163078 CCTCATAGGAAAGTCATGGTCTGT 59.837 45.833 0.00 0.00 37.67 3.41
56 57 5.344743 TCATAGGAAAGTCATGGTCTGTC 57.655 43.478 0.00 0.00 0.00 3.51
57 58 5.026121 TCATAGGAAAGTCATGGTCTGTCT 58.974 41.667 0.00 0.00 0.00 3.41
58 59 3.971245 AGGAAAGTCATGGTCTGTCTC 57.029 47.619 0.00 0.00 0.00 3.36
59 60 3.242867 AGGAAAGTCATGGTCTGTCTCA 58.757 45.455 0.00 0.00 0.00 3.27
60 61 3.648067 AGGAAAGTCATGGTCTGTCTCAA 59.352 43.478 0.00 0.00 0.00 3.02
61 62 4.103153 AGGAAAGTCATGGTCTGTCTCAAA 59.897 41.667 0.00 0.00 0.00 2.69
62 63 4.214332 GGAAAGTCATGGTCTGTCTCAAAC 59.786 45.833 0.00 0.00 0.00 2.93
63 64 4.422073 AAGTCATGGTCTGTCTCAAACA 57.578 40.909 0.00 0.00 36.18 2.83
64 65 4.422073 AGTCATGGTCTGTCTCAAACAA 57.578 40.909 0.00 0.00 37.45 2.83
65 66 4.384056 AGTCATGGTCTGTCTCAAACAAG 58.616 43.478 0.00 0.00 37.45 3.16
66 67 4.101585 AGTCATGGTCTGTCTCAAACAAGA 59.898 41.667 0.00 0.00 37.45 3.02
67 68 4.450419 GTCATGGTCTGTCTCAAACAAGAG 59.550 45.833 0.00 0.00 37.45 2.85
68 69 4.344968 TCATGGTCTGTCTCAAACAAGAGA 59.655 41.667 0.00 0.00 42.12 3.10
69 70 4.753516 TGGTCTGTCTCAAACAAGAGAA 57.246 40.909 0.00 0.00 45.54 2.87
70 71 5.097742 TGGTCTGTCTCAAACAAGAGAAA 57.902 39.130 0.00 0.00 45.54 2.52
71 72 5.684704 TGGTCTGTCTCAAACAAGAGAAAT 58.315 37.500 0.00 0.00 45.54 2.17
72 73 5.528690 TGGTCTGTCTCAAACAAGAGAAATG 59.471 40.000 0.00 0.00 45.54 2.32
73 74 5.447573 GTCTGTCTCAAACAAGAGAAATGC 58.552 41.667 0.00 0.00 45.54 3.56
74 75 4.516698 TCTGTCTCAAACAAGAGAAATGCC 59.483 41.667 0.00 0.00 45.54 4.40
75 76 3.569701 TGTCTCAAACAAGAGAAATGCCC 59.430 43.478 0.00 0.00 45.54 5.36
76 77 2.813754 TCTCAAACAAGAGAAATGCCCG 59.186 45.455 0.00 0.00 41.45 6.13
77 78 2.554032 CTCAAACAAGAGAAATGCCCGT 59.446 45.455 0.00 0.00 37.87 5.28
78 79 2.293122 TCAAACAAGAGAAATGCCCGTG 59.707 45.455 0.00 0.00 0.00 4.94
79 80 1.981256 AACAAGAGAAATGCCCGTGT 58.019 45.000 0.00 0.00 0.00 4.49
80 81 1.523758 ACAAGAGAAATGCCCGTGTC 58.476 50.000 0.00 0.00 0.00 3.67
81 82 1.072331 ACAAGAGAAATGCCCGTGTCT 59.928 47.619 0.00 0.00 0.00 3.41
82 83 2.154462 CAAGAGAAATGCCCGTGTCTT 58.846 47.619 0.00 0.00 0.00 3.01
83 84 2.100605 AGAGAAATGCCCGTGTCTTC 57.899 50.000 0.00 0.00 0.00 2.87
84 85 1.087501 GAGAAATGCCCGTGTCTTCC 58.912 55.000 0.00 0.00 0.00 3.46
85 86 0.673644 AGAAATGCCCGTGTCTTCCG 60.674 55.000 0.00 0.00 0.00 4.30
86 87 0.672401 GAAATGCCCGTGTCTTCCGA 60.672 55.000 0.00 0.00 0.00 4.55
87 88 0.953960 AAATGCCCGTGTCTTCCGAC 60.954 55.000 0.00 0.00 40.64 4.79
95 96 3.588277 TGTCTTCCGACACAAGAGC 57.412 52.632 0.00 0.00 44.85 4.09
96 97 0.318699 TGTCTTCCGACACAAGAGCG 60.319 55.000 0.00 0.00 44.85 5.03
97 98 1.372997 TCTTCCGACACAAGAGCGC 60.373 57.895 0.00 0.00 0.00 5.92
98 99 1.373497 CTTCCGACACAAGAGCGCT 60.373 57.895 11.27 11.27 0.00 5.92
99 100 0.109272 CTTCCGACACAAGAGCGCTA 60.109 55.000 11.50 0.00 0.00 4.26
100 101 0.388134 TTCCGACACAAGAGCGCTAC 60.388 55.000 11.50 4.00 0.00 3.58
101 102 1.080772 CCGACACAAGAGCGCTACA 60.081 57.895 11.50 0.00 0.00 2.74
102 103 0.458543 CCGACACAAGAGCGCTACAT 60.459 55.000 11.50 0.00 0.00 2.29
103 104 0.917259 CGACACAAGAGCGCTACATC 59.083 55.000 11.50 0.00 0.00 3.06
104 105 1.281899 GACACAAGAGCGCTACATCC 58.718 55.000 11.50 0.00 0.00 3.51
105 106 0.608130 ACACAAGAGCGCTACATCCA 59.392 50.000 11.50 0.00 0.00 3.41
106 107 1.001974 ACACAAGAGCGCTACATCCAA 59.998 47.619 11.50 0.00 0.00 3.53
107 108 2.283298 CACAAGAGCGCTACATCCAAT 58.717 47.619 11.50 0.00 0.00 3.16
108 109 2.286294 CACAAGAGCGCTACATCCAATC 59.714 50.000 11.50 0.00 0.00 2.67
109 110 1.869767 CAAGAGCGCTACATCCAATCC 59.130 52.381 11.50 0.00 0.00 3.01
110 111 1.418334 AGAGCGCTACATCCAATCCT 58.582 50.000 11.50 0.00 0.00 3.24
111 112 1.765314 AGAGCGCTACATCCAATCCTT 59.235 47.619 11.50 0.00 0.00 3.36
112 113 2.139118 GAGCGCTACATCCAATCCTTC 58.861 52.381 11.50 0.00 0.00 3.46
113 114 1.765314 AGCGCTACATCCAATCCTTCT 59.235 47.619 8.99 0.00 0.00 2.85
114 115 2.965831 AGCGCTACATCCAATCCTTCTA 59.034 45.455 8.99 0.00 0.00 2.10
115 116 3.388024 AGCGCTACATCCAATCCTTCTAA 59.612 43.478 8.99 0.00 0.00 2.10
116 117 4.127171 GCGCTACATCCAATCCTTCTAAA 58.873 43.478 0.00 0.00 0.00 1.85
117 118 4.024809 GCGCTACATCCAATCCTTCTAAAC 60.025 45.833 0.00 0.00 0.00 2.01
118 119 5.360591 CGCTACATCCAATCCTTCTAAACT 58.639 41.667 0.00 0.00 0.00 2.66
119 120 5.817816 CGCTACATCCAATCCTTCTAAACTT 59.182 40.000 0.00 0.00 0.00 2.66
120 121 6.984474 CGCTACATCCAATCCTTCTAAACTTA 59.016 38.462 0.00 0.00 0.00 2.24
121 122 7.494625 CGCTACATCCAATCCTTCTAAACTTAA 59.505 37.037 0.00 0.00 0.00 1.85
122 123 9.343539 GCTACATCCAATCCTTCTAAACTTAAT 57.656 33.333 0.00 0.00 0.00 1.40
128 129 9.185680 TCCAATCCTTCTAAACTTAATTAAGGC 57.814 33.333 25.25 0.00 37.62 4.35
129 130 8.414003 CCAATCCTTCTAAACTTAATTAAGGCC 58.586 37.037 25.25 0.00 37.62 5.19
130 131 9.190317 CAATCCTTCTAAACTTAATTAAGGCCT 57.810 33.333 25.25 0.00 37.62 5.19
131 132 9.769677 AATCCTTCTAAACTTAATTAAGGCCTT 57.230 29.630 24.18 24.18 37.62 4.35
132 133 8.575649 TCCTTCTAAACTTAATTAAGGCCTTG 57.424 34.615 28.77 12.48 37.62 3.61
133 134 8.168058 TCCTTCTAAACTTAATTAAGGCCTTGT 58.832 33.333 28.77 13.19 37.62 3.16
134 135 8.803235 CCTTCTAAACTTAATTAAGGCCTTGTT 58.197 33.333 28.77 22.63 37.62 2.83
136 137 9.974980 TTCTAAACTTAATTAAGGCCTTGTTTG 57.025 29.630 28.77 18.95 37.62 2.93
137 138 8.581578 TCTAAACTTAATTAAGGCCTTGTTTGG 58.418 33.333 28.77 25.30 37.62 3.28
138 139 6.740944 AACTTAATTAAGGCCTTGTTTGGT 57.259 33.333 28.77 18.25 37.62 3.67
139 140 6.740944 ACTTAATTAAGGCCTTGTTTGGTT 57.259 33.333 28.77 14.40 37.62 3.67
140 141 6.755206 ACTTAATTAAGGCCTTGTTTGGTTC 58.245 36.000 28.77 0.00 37.62 3.62
141 142 4.617253 AATTAAGGCCTTGTTTGGTTCC 57.383 40.909 28.77 0.00 0.00 3.62
142 143 2.757894 TAAGGCCTTGTTTGGTTCCA 57.242 45.000 28.77 0.00 0.00 3.53
143 144 1.872773 AAGGCCTTGTTTGGTTCCAA 58.127 45.000 19.73 0.00 0.00 3.53
144 145 1.872773 AGGCCTTGTTTGGTTCCAAA 58.127 45.000 12.29 12.29 34.09 3.28
145 146 2.407562 AGGCCTTGTTTGGTTCCAAAT 58.592 42.857 18.11 0.31 38.07 2.32
146 147 3.582164 AGGCCTTGTTTGGTTCCAAATA 58.418 40.909 18.11 13.61 38.07 1.40
147 148 3.970640 AGGCCTTGTTTGGTTCCAAATAA 59.029 39.130 18.11 19.00 38.07 1.40
148 149 4.040339 AGGCCTTGTTTGGTTCCAAATAAG 59.960 41.667 29.68 29.68 45.78 1.73
149 150 4.202315 GGCCTTGTTTGGTTCCAAATAAGT 60.202 41.667 31.66 0.00 45.28 2.24
150 151 4.988540 GCCTTGTTTGGTTCCAAATAAGTC 59.011 41.667 31.66 24.28 45.28 3.01
151 152 5.452636 GCCTTGTTTGGTTCCAAATAAGTCA 60.453 40.000 31.66 19.21 45.28 3.41
152 153 5.983118 CCTTGTTTGGTTCCAAATAAGTCAC 59.017 40.000 31.66 17.21 45.28 3.67
153 154 5.523438 TGTTTGGTTCCAAATAAGTCACC 57.477 39.130 18.11 5.59 38.07 4.02
154 155 4.956700 TGTTTGGTTCCAAATAAGTCACCA 59.043 37.500 18.11 7.77 38.07 4.17
155 156 5.422331 TGTTTGGTTCCAAATAAGTCACCAA 59.578 36.000 18.11 0.00 41.48 3.67
156 157 5.523438 TTGGTTCCAAATAAGTCACCAAC 57.477 39.130 1.42 0.00 38.97 3.77
157 158 4.798882 TGGTTCCAAATAAGTCACCAACT 58.201 39.130 0.00 0.00 41.10 3.16
158 159 6.155393 TTTGGTTCCAAATAAGTCACCAACTT 59.845 34.615 12.29 0.00 42.59 2.66
172 173 8.747538 AGTCACCAACTTATAAGTTCAAAAGT 57.252 30.769 24.77 15.11 45.65 2.66
173 174 8.621286 AGTCACCAACTTATAAGTTCAAAAGTG 58.379 33.333 24.77 22.86 45.65 3.16
174 175 8.617809 GTCACCAACTTATAAGTTCAAAAGTGA 58.382 33.333 24.77 24.21 45.65 3.41
175 176 9.179909 TCACCAACTTATAAGTTCAAAAGTGAA 57.820 29.630 24.77 14.21 45.65 3.18
176 177 9.796120 CACCAACTTATAAGTTCAAAAGTGAAA 57.204 29.630 24.77 0.00 45.65 2.69
203 204 8.601845 AAATAACTTATTTTGCCAAACAGACC 57.398 30.769 1.48 0.00 34.91 3.85
204 205 4.600692 ACTTATTTTGCCAAACAGACCC 57.399 40.909 0.00 0.00 0.00 4.46
205 206 3.964031 ACTTATTTTGCCAAACAGACCCA 59.036 39.130 0.00 0.00 0.00 4.51
206 207 4.407296 ACTTATTTTGCCAAACAGACCCAA 59.593 37.500 0.00 0.00 0.00 4.12
207 208 2.682155 TTTTGCCAAACAGACCCAAC 57.318 45.000 0.00 0.00 0.00 3.77
208 209 1.859302 TTTGCCAAACAGACCCAACT 58.141 45.000 0.00 0.00 0.00 3.16
209 210 1.859302 TTGCCAAACAGACCCAACTT 58.141 45.000 0.00 0.00 0.00 2.66
210 211 2.738587 TGCCAAACAGACCCAACTTA 57.261 45.000 0.00 0.00 0.00 2.24
211 212 3.237268 TGCCAAACAGACCCAACTTAT 57.763 42.857 0.00 0.00 0.00 1.73
212 213 4.374689 TGCCAAACAGACCCAACTTATA 57.625 40.909 0.00 0.00 0.00 0.98
213 214 4.730966 TGCCAAACAGACCCAACTTATAA 58.269 39.130 0.00 0.00 0.00 0.98
214 215 4.764823 TGCCAAACAGACCCAACTTATAAG 59.235 41.667 11.05 11.05 0.00 1.73
215 216 4.765339 GCCAAACAGACCCAACTTATAAGT 59.235 41.667 12.50 12.50 42.04 2.24
216 217 5.106277 GCCAAACAGACCCAACTTATAAGTC 60.106 44.000 18.28 6.18 38.57 3.01
217 218 6.001460 CCAAACAGACCCAACTTATAAGTCA 58.999 40.000 18.28 0.00 38.57 3.41
218 219 6.072673 CCAAACAGACCCAACTTATAAGTCAC 60.073 42.308 18.28 8.47 38.57 3.67
219 220 5.161943 ACAGACCCAACTTATAAGTCACC 57.838 43.478 18.28 6.90 38.57 4.02
220 221 4.019591 ACAGACCCAACTTATAAGTCACCC 60.020 45.833 18.28 7.52 38.57 4.61
221 222 3.522343 AGACCCAACTTATAAGTCACCCC 59.478 47.826 18.28 8.46 38.57 4.95
222 223 3.261962 ACCCAACTTATAAGTCACCCCA 58.738 45.455 18.28 0.00 38.57 4.96
223 224 3.658705 ACCCAACTTATAAGTCACCCCAA 59.341 43.478 18.28 0.00 38.57 4.12
224 225 4.014406 CCCAACTTATAAGTCACCCCAAC 58.986 47.826 18.28 0.00 38.57 3.77
225 226 4.263771 CCCAACTTATAAGTCACCCCAACT 60.264 45.833 18.28 0.00 38.57 3.16
226 227 5.321927 CCAACTTATAAGTCACCCCAACTT 58.678 41.667 18.28 0.00 38.57 2.66
227 228 6.478129 CCAACTTATAAGTCACCCCAACTTA 58.522 40.000 18.28 0.00 41.91 2.24
228 229 7.116736 CCAACTTATAAGTCACCCCAACTTAT 58.883 38.462 18.28 11.86 46.48 1.73
229 230 8.269317 CCAACTTATAAGTCACCCCAACTTATA 58.731 37.037 18.28 10.26 44.28 0.98
234 235 5.836024 AAGTCACCCCAACTTATAAGTCA 57.164 39.130 18.28 0.00 38.57 3.41
235 236 6.388619 AAGTCACCCCAACTTATAAGTCAT 57.611 37.500 18.28 1.19 38.57 3.06
236 237 7.504926 AAGTCACCCCAACTTATAAGTCATA 57.495 36.000 18.28 0.00 38.57 2.15
237 238 7.504926 AGTCACCCCAACTTATAAGTCATAA 57.495 36.000 18.28 0.00 38.57 1.90
248 249 7.484035 CTTATAAGTCATAAGTTGCTCCACC 57.516 40.000 4.18 0.00 40.84 4.61
249 250 2.789409 AGTCATAAGTTGCTCCACCC 57.211 50.000 0.00 0.00 0.00 4.61
250 251 1.282157 AGTCATAAGTTGCTCCACCCC 59.718 52.381 0.00 0.00 0.00 4.95
251 252 1.004277 GTCATAAGTTGCTCCACCCCA 59.996 52.381 0.00 0.00 0.00 4.96
252 253 1.707989 TCATAAGTTGCTCCACCCCAA 59.292 47.619 0.00 0.00 0.00 4.12
253 254 1.818674 CATAAGTTGCTCCACCCCAAC 59.181 52.381 0.00 0.00 41.13 3.77
254 255 3.674278 AGTTGCTCCACCCCAACT 58.326 55.556 0.56 0.56 44.86 3.16
255 256 1.930520 AGTTGCTCCACCCCAACTT 59.069 52.632 0.56 0.00 46.86 2.66
256 257 1.145571 AGTTGCTCCACCCCAACTTA 58.854 50.000 0.56 0.00 46.86 2.24
257 258 1.497286 AGTTGCTCCACCCCAACTTAA 59.503 47.619 0.56 0.00 46.86 1.85
258 259 2.091555 AGTTGCTCCACCCCAACTTAAA 60.092 45.455 0.56 0.00 46.86 1.52
259 260 2.696187 GTTGCTCCACCCCAACTTAAAA 59.304 45.455 0.00 0.00 38.55 1.52
260 261 2.312390 TGCTCCACCCCAACTTAAAAC 58.688 47.619 0.00 0.00 0.00 2.43
261 262 2.091555 TGCTCCACCCCAACTTAAAACT 60.092 45.455 0.00 0.00 0.00 2.66
262 263 2.963101 GCTCCACCCCAACTTAAAACTT 59.037 45.455 0.00 0.00 0.00 2.66
263 264 4.146564 GCTCCACCCCAACTTAAAACTTA 58.853 43.478 0.00 0.00 0.00 2.24
264 265 4.770531 GCTCCACCCCAACTTAAAACTTAT 59.229 41.667 0.00 0.00 0.00 1.73
265 266 5.947566 GCTCCACCCCAACTTAAAACTTATA 59.052 40.000 0.00 0.00 0.00 0.98
266 267 6.434965 GCTCCACCCCAACTTAAAACTTATAA 59.565 38.462 0.00 0.00 0.00 0.98
267 268 7.362660 GCTCCACCCCAACTTAAAACTTATAAG 60.363 40.741 11.05 11.05 36.62 1.73
268 269 7.528675 TCCACCCCAACTTAAAACTTATAAGT 58.471 34.615 12.50 12.50 43.57 2.24
269 270 7.666804 TCCACCCCAACTTAAAACTTATAAGTC 59.333 37.037 18.28 0.00 41.49 3.01
270 271 7.449086 CCACCCCAACTTAAAACTTATAAGTCA 59.551 37.037 18.28 4.72 41.49 3.41
271 272 8.294577 CACCCCAACTTAAAACTTATAAGTCAC 58.705 37.037 18.28 0.00 41.49 3.67
272 273 7.449395 ACCCCAACTTAAAACTTATAAGTCACC 59.551 37.037 18.28 0.00 41.49 4.02
273 274 7.094075 CCCCAACTTAAAACTTATAAGTCACCC 60.094 40.741 18.28 0.00 41.49 4.61
274 275 7.094075 CCCAACTTAAAACTTATAAGTCACCCC 60.094 40.741 18.28 0.00 41.49 4.95
275 276 7.668469 CCAACTTAAAACTTATAAGTCACCCCT 59.332 37.037 18.28 0.00 41.49 4.79
276 277 9.074576 CAACTTAAAACTTATAAGTCACCCCTT 57.925 33.333 18.28 5.47 41.49 3.95
277 278 9.650714 AACTTAAAACTTATAAGTCACCCCTTT 57.349 29.630 18.28 15.02 41.49 3.11
278 279 9.650714 ACTTAAAACTTATAAGTCACCCCTTTT 57.349 29.630 18.28 14.40 38.85 2.27
281 282 5.977489 ACTTATAAGTCACCCCTTTTTGC 57.023 39.130 12.50 0.00 32.86 3.68
282 283 5.390387 ACTTATAAGTCACCCCTTTTTGCA 58.610 37.500 12.50 0.00 32.86 4.08
283 284 6.016555 ACTTATAAGTCACCCCTTTTTGCAT 58.983 36.000 12.50 0.00 32.86 3.96
284 285 4.806640 ATAAGTCACCCCTTTTTGCATG 57.193 40.909 0.00 0.00 0.00 4.06
285 286 1.341080 AGTCACCCCTTTTTGCATGG 58.659 50.000 0.00 0.00 0.00 3.66
286 287 0.321346 GTCACCCCTTTTTGCATGGG 59.679 55.000 0.00 7.40 44.03 4.00
289 290 1.982430 CCCCTTTTTGCATGGGTCC 59.018 57.895 11.83 0.00 38.08 4.46
290 291 1.552799 CCCCTTTTTGCATGGGTCCC 61.553 60.000 0.00 0.00 38.08 4.46
291 292 0.835543 CCCTTTTTGCATGGGTCCCA 60.836 55.000 14.64 14.64 35.41 4.37
292 293 0.321346 CCTTTTTGCATGGGTCCCAC 59.679 55.000 14.57 1.42 35.80 4.61
293 294 0.321346 CTTTTTGCATGGGTCCCACC 59.679 55.000 14.57 8.17 35.80 4.61
294 295 0.399091 TTTTTGCATGGGTCCCACCA 60.399 50.000 14.57 11.02 46.24 4.17
295 296 1.118356 TTTTGCATGGGTCCCACCAC 61.118 55.000 14.57 6.21 44.72 4.16
296 297 3.521765 TTGCATGGGTCCCACCACC 62.522 63.158 14.57 2.26 44.72 4.61
297 298 3.661648 GCATGGGTCCCACCACCT 61.662 66.667 14.57 0.00 44.72 4.00
298 299 3.180282 CATGGGTCCCACCACCTT 58.820 61.111 14.57 0.00 44.72 3.50
299 300 1.464722 CATGGGTCCCACCACCTTT 59.535 57.895 14.57 0.00 44.72 3.11
300 301 0.701731 CATGGGTCCCACCACCTTTA 59.298 55.000 14.57 0.00 44.72 1.85
301 302 0.702316 ATGGGTCCCACCACCTTTAC 59.298 55.000 14.57 0.00 44.72 2.01
302 303 0.698198 TGGGTCCCACCACCTTTACA 60.698 55.000 6.47 0.00 41.02 2.41
303 304 0.702316 GGGTCCCACCACCTTTACAT 59.298 55.000 1.78 0.00 41.02 2.29
304 305 1.917568 GGGTCCCACCACCTTTACATA 59.082 52.381 1.78 0.00 41.02 2.29
305 306 2.309458 GGGTCCCACCACCTTTACATAA 59.691 50.000 1.78 0.00 41.02 1.90
306 307 3.245336 GGGTCCCACCACCTTTACATAAA 60.245 47.826 1.78 0.00 41.02 1.40
307 308 4.409187 GGTCCCACCACCTTTACATAAAA 58.591 43.478 0.00 0.00 38.42 1.52
308 309 4.833938 GGTCCCACCACCTTTACATAAAAA 59.166 41.667 0.00 0.00 38.42 1.94
328 329 5.989551 AAAAACAAGATGGAAATGTGTGC 57.010 34.783 0.00 0.00 0.00 4.57
329 330 4.942761 AAACAAGATGGAAATGTGTGCT 57.057 36.364 0.00 0.00 0.00 4.40
330 331 4.510038 AACAAGATGGAAATGTGTGCTC 57.490 40.909 0.00 0.00 0.00 4.26
331 332 3.489355 ACAAGATGGAAATGTGTGCTCA 58.511 40.909 0.00 0.00 0.00 4.26
332 333 3.504906 ACAAGATGGAAATGTGTGCTCAG 59.495 43.478 0.00 0.00 0.00 3.35
333 334 3.708403 AGATGGAAATGTGTGCTCAGA 57.292 42.857 0.00 0.00 0.00 3.27
334 335 4.232188 AGATGGAAATGTGTGCTCAGAT 57.768 40.909 0.00 0.00 0.00 2.90
335 336 5.363562 AGATGGAAATGTGTGCTCAGATA 57.636 39.130 0.00 0.00 0.00 1.98
336 337 5.748402 AGATGGAAATGTGTGCTCAGATAA 58.252 37.500 0.00 0.00 0.00 1.75
337 338 5.587844 AGATGGAAATGTGTGCTCAGATAAC 59.412 40.000 0.00 0.00 0.00 1.89
338 339 4.910195 TGGAAATGTGTGCTCAGATAACT 58.090 39.130 0.00 0.00 0.00 2.24
339 340 5.316167 TGGAAATGTGTGCTCAGATAACTT 58.684 37.500 0.00 0.00 0.00 2.66
340 341 6.472016 TGGAAATGTGTGCTCAGATAACTTA 58.528 36.000 0.00 0.00 0.00 2.24
341 342 7.112122 TGGAAATGTGTGCTCAGATAACTTAT 58.888 34.615 0.00 0.00 0.00 1.73
342 343 8.264347 TGGAAATGTGTGCTCAGATAACTTATA 58.736 33.333 0.00 0.00 0.00 0.98
343 344 9.109393 GGAAATGTGTGCTCAGATAACTTATAA 57.891 33.333 0.00 0.00 0.00 0.98
345 346 9.672673 AAATGTGTGCTCAGATAACTTATAAGT 57.327 29.630 12.50 12.50 42.04 2.24
346 347 8.879342 ATGTGTGCTCAGATAACTTATAAGTC 57.121 34.615 18.28 6.64 38.57 3.01
347 348 7.836842 TGTGTGCTCAGATAACTTATAAGTCA 58.163 34.615 18.28 4.58 38.57 3.41
348 349 7.976175 TGTGTGCTCAGATAACTTATAAGTCAG 59.024 37.037 18.28 8.79 38.57 3.51
349 350 7.436673 GTGTGCTCAGATAACTTATAAGTCAGG 59.563 40.741 18.28 7.33 38.57 3.86
350 351 7.124298 TGTGCTCAGATAACTTATAAGTCAGGT 59.876 37.037 18.28 5.74 38.57 4.00
351 352 7.436673 GTGCTCAGATAACTTATAAGTCAGGTG 59.563 40.741 18.28 13.27 38.57 4.00
352 353 7.342026 TGCTCAGATAACTTATAAGTCAGGTGA 59.658 37.037 18.28 16.17 38.57 4.02
353 354 8.364142 GCTCAGATAACTTATAAGTCAGGTGAT 58.636 37.037 18.28 3.97 38.57 3.06
361 362 8.788325 ACTTATAAGTCAGGTGATAACCAAAC 57.212 34.615 12.50 0.00 32.86 2.93
362 363 8.380099 ACTTATAAGTCAGGTGATAACCAAACA 58.620 33.333 12.50 0.00 32.86 2.83
363 364 8.786826 TTATAAGTCAGGTGATAACCAAACAG 57.213 34.615 0.85 0.00 0.00 3.16
364 365 4.974645 AGTCAGGTGATAACCAAACAGA 57.025 40.909 0.85 0.00 0.00 3.41
365 366 4.642429 AGTCAGGTGATAACCAAACAGAC 58.358 43.478 0.85 1.80 0.00 3.51
366 367 3.432252 GTCAGGTGATAACCAAACAGACG 59.568 47.826 0.85 0.00 0.00 4.18
367 368 3.070446 TCAGGTGATAACCAAACAGACGT 59.930 43.478 0.85 0.00 0.00 4.34
368 369 3.186409 CAGGTGATAACCAAACAGACGTG 59.814 47.826 0.85 0.00 0.00 4.49
369 370 3.070446 AGGTGATAACCAAACAGACGTGA 59.930 43.478 0.85 0.00 0.00 4.35
370 371 3.185797 GGTGATAACCAAACAGACGTGAC 59.814 47.826 0.00 0.00 0.00 3.67
371 372 4.056050 GTGATAACCAAACAGACGTGACT 58.944 43.478 0.00 0.00 0.00 3.41
372 373 4.510340 GTGATAACCAAACAGACGTGACTT 59.490 41.667 0.00 0.00 0.00 3.01
373 374 5.693104 GTGATAACCAAACAGACGTGACTTA 59.307 40.000 0.00 0.00 0.00 2.24
374 375 6.367969 GTGATAACCAAACAGACGTGACTTAT 59.632 38.462 0.00 0.00 0.00 1.73
375 376 7.543172 GTGATAACCAAACAGACGTGACTTATA 59.457 37.037 0.00 0.00 0.00 0.98
376 377 8.089597 TGATAACCAAACAGACGTGACTTATAA 58.910 33.333 0.00 0.00 0.00 0.98
377 378 6.780706 AACCAAACAGACGTGACTTATAAG 57.219 37.500 11.05 11.05 0.00 1.73
378 379 5.850614 ACCAAACAGACGTGACTTATAAGT 58.149 37.500 18.05 18.05 43.16 2.24
395 396 9.269453 ACTTATAAGTCACTGGTTTTAAGTCAC 57.731 33.333 12.50 0.00 32.86 3.67
396 397 8.611654 TTATAAGTCACTGGTTTTAAGTCACC 57.388 34.615 0.00 0.00 0.00 4.02
397 398 4.772886 AGTCACTGGTTTTAAGTCACCT 57.227 40.909 3.10 0.00 33.76 4.00
398 399 4.451900 AGTCACTGGTTTTAAGTCACCTG 58.548 43.478 6.12 6.12 37.86 4.00
399 400 4.163458 AGTCACTGGTTTTAAGTCACCTGA 59.837 41.667 11.87 3.02 35.95 3.86
400 401 4.272748 GTCACTGGTTTTAAGTCACCTGAC 59.727 45.833 11.87 0.00 45.08 3.51
428 429 4.015872 GTCAGGTGACTTATTGGAACCA 57.984 45.455 2.72 0.00 41.65 3.67
429 430 4.394729 GTCAGGTGACTTATTGGAACCAA 58.605 43.478 8.75 8.75 41.65 3.67
430 431 4.825085 GTCAGGTGACTTATTGGAACCAAA 59.175 41.667 10.36 0.00 41.65 3.28
431 432 4.825085 TCAGGTGACTTATTGGAACCAAAC 59.175 41.667 10.36 3.26 40.21 2.93
432 433 4.582656 CAGGTGACTTATTGGAACCAAACA 59.417 41.667 10.36 0.00 40.21 2.83
433 434 4.827284 AGGTGACTTATTGGAACCAAACAG 59.173 41.667 10.36 11.01 37.44 3.16
434 435 4.022329 GGTGACTTATTGGAACCAAACAGG 60.022 45.833 10.36 5.07 45.67 4.00
435 436 3.572255 TGACTTATTGGAACCAAACAGGC 59.428 43.478 10.36 11.26 43.14 4.85
436 437 2.897326 ACTTATTGGAACCAAACAGGCC 59.103 45.455 10.36 0.00 43.14 5.19
437 438 1.931635 TATTGGAACCAAACAGGCCC 58.068 50.000 10.36 0.00 43.14 5.80
722 800 2.523184 GAAACGGCAAAGCGGTAGCC 62.523 60.000 18.08 18.08 46.67 3.93
749 827 3.440522 GCGAAAAAGTTTAGCTCCCAGAT 59.559 43.478 0.00 0.00 0.00 2.90
762 840 1.153647 CCAGATGCACGCGTCCTTA 60.154 57.895 9.86 0.00 32.67 2.69
763 841 1.421410 CCAGATGCACGCGTCCTTAC 61.421 60.000 9.86 0.00 32.67 2.34
764 842 0.735978 CAGATGCACGCGTCCTTACA 60.736 55.000 9.86 3.01 32.67 2.41
765 843 0.736325 AGATGCACGCGTCCTTACAC 60.736 55.000 9.86 0.00 32.67 2.90
766 844 1.005512 ATGCACGCGTCCTTACACA 60.006 52.632 9.86 0.00 0.00 3.72
767 845 0.391130 ATGCACGCGTCCTTACACAT 60.391 50.000 9.86 1.67 0.00 3.21
768 846 0.601576 TGCACGCGTCCTTACACATT 60.602 50.000 9.86 0.00 0.00 2.71
769 847 1.336980 TGCACGCGTCCTTACACATTA 60.337 47.619 9.86 0.00 0.00 1.90
770 848 1.323534 GCACGCGTCCTTACACATTAG 59.676 52.381 9.86 0.00 0.00 1.73
816 1405 4.721226 GCTCTGTACGTATTTCACAAAGCG 60.721 45.833 0.00 0.00 0.00 4.68
920 1516 2.229302 GCTATCCACTCCCTCGTGATAC 59.771 54.545 0.00 0.00 37.06 2.24
1177 1780 1.982395 CCCGGTGAGTACTCCAGCA 60.982 63.158 20.11 0.00 32.74 4.41
1271 1874 7.296628 TGATAAAATGCCTTTACCAACTTGT 57.703 32.000 0.00 0.00 32.26 3.16
1360 1969 2.514824 GTGGATGGAAGGGCGAGC 60.515 66.667 0.00 0.00 0.00 5.03
1401 2013 1.250476 GTTCGATGAAATGCGTGTGC 58.750 50.000 0.00 0.00 43.20 4.57
1440 2052 4.760047 CGTTCTGGCACCCGAGGG 62.760 72.222 6.63 6.63 42.03 4.30
1459 2071 1.202268 GGTGACGGAATACAGAGTCGG 60.202 57.143 0.00 0.00 36.49 4.79
1471 2083 2.045926 AGTCGGCCAAGCACCATC 60.046 61.111 2.24 0.00 0.00 3.51
1477 2089 2.357836 CCAAGCACCATCCTGCCT 59.642 61.111 0.00 0.00 37.96 4.75
1503 2115 0.950116 GCCTACAGATGATGCTTGCC 59.050 55.000 0.00 0.00 0.00 4.52
1513 2125 5.006358 CAGATGATGCTTGCCTTTTATTTGC 59.994 40.000 0.00 0.00 0.00 3.68
1521 2133 4.540359 TGCCTTTTATTTGCTCTGCATT 57.460 36.364 0.00 0.00 38.76 3.56
1539 2151 8.121305 TCTGCATTTGGTTTAATTACTGTCAT 57.879 30.769 0.00 0.00 0.00 3.06
1544 2156 9.139174 CATTTGGTTTAATTACTGTCATTGTCC 57.861 33.333 0.00 0.00 0.00 4.02
1586 2198 1.527034 TCAAGTGCTGATCAACTGCC 58.473 50.000 0.79 0.00 41.66 4.85
1587 2199 1.072806 TCAAGTGCTGATCAACTGCCT 59.927 47.619 0.79 0.00 41.66 4.75
1776 2403 1.579698 CATCGCTGACTGGAAGGATG 58.420 55.000 0.00 0.00 39.30 3.51
1889 2516 2.173356 CCTGGCTTATCATTCCCACAGA 59.827 50.000 0.00 0.00 0.00 3.41
1900 2529 5.569355 TCATTCCCACAGATTTACATGTGT 58.431 37.500 9.11 0.00 44.24 3.72
1946 2601 6.503524 TGCCTTTGAAAGTTATGTTCAGTTC 58.496 36.000 4.02 0.00 36.41 3.01
1977 2632 6.808321 TTGTGAAATATGCTAGTCCCTAGT 57.192 37.500 0.00 0.00 36.53 2.57
1981 2636 8.107095 TGTGAAATATGCTAGTCCCTAGTTTTT 58.893 33.333 0.00 0.00 36.53 1.94
2057 2712 1.948834 CCAGATGCTTTCACACACACA 59.051 47.619 0.00 0.00 0.00 3.72
2058 2713 2.287188 CCAGATGCTTTCACACACACAC 60.287 50.000 0.00 0.00 0.00 3.82
2059 2714 2.355444 CAGATGCTTTCACACACACACA 59.645 45.455 0.00 0.00 0.00 3.72
2060 2715 2.355756 AGATGCTTTCACACACACACAC 59.644 45.455 0.00 0.00 0.00 3.82
2061 2716 1.528129 TGCTTTCACACACACACACA 58.472 45.000 0.00 0.00 0.00 3.72
2062 2717 1.198867 TGCTTTCACACACACACACAC 59.801 47.619 0.00 0.00 0.00 3.82
2165 2820 5.771469 TCGATGACAAAAGTTCAATGCATT 58.229 33.333 5.99 5.99 0.00 3.56
2193 2848 2.634453 TCAACCACTCTGAAGCTGATCA 59.366 45.455 0.00 0.00 0.00 2.92
2211 2866 6.267492 TGATCATCCTGTACTAGAGGAAGA 57.733 41.667 9.06 9.06 43.01 2.87
2213 2868 4.794334 TCATCCTGTACTAGAGGAAGACC 58.206 47.826 6.06 0.00 43.01 3.85
2230 2885 7.234355 AGGAAGACCTTGTTCTGTTTGATAAT 58.766 34.615 0.00 0.00 45.36 1.28
2266 2921 5.163195 ACCTGAAAGTGTACCATCTCTTTGT 60.163 40.000 0.00 0.00 33.33 2.83
2275 2930 6.149474 GTGTACCATCTCTTTGTATTGCTGTT 59.851 38.462 0.00 0.00 0.00 3.16
2380 3035 7.442062 CAGGTATGAGCATAACATGTCATAACA 59.558 37.037 16.14 7.19 40.38 2.41
2385 3040 7.274447 TGAGCATAACATGTCATAACATCTGA 58.726 34.615 0.00 0.00 44.41 3.27
2402 3057 8.937634 AACATCTGATTGCCTTCATTTTTATC 57.062 30.769 0.00 0.00 0.00 1.75
2404 3059 6.469782 TCTGATTGCCTTCATTTTTATCCC 57.530 37.500 0.00 0.00 0.00 3.85
2419 3074 9.599866 CATTTTTATCCCTTTTTAGAACCATCC 57.400 33.333 0.00 0.00 0.00 3.51
2439 3094 4.072131 TCCTTAGCAAACAAGCTTCGATT 58.928 39.130 0.00 0.00 43.70 3.34
2441 3096 4.853743 CCTTAGCAAACAAGCTTCGATTTC 59.146 41.667 0.00 0.00 43.70 2.17
2448 3103 2.755103 ACAAGCTTCGATTTCCAATCCC 59.245 45.455 0.00 0.00 0.00 3.85
2453 3108 5.006386 AGCTTCGATTTCCAATCCCATATC 58.994 41.667 0.00 0.00 0.00 1.63
2473 3128 1.399440 CTGTGATCAACCCGCTGAATG 59.601 52.381 0.00 0.00 0.00 2.67
2530 5674 7.239438 TCCTATACATAGTTAGGCTTAGTGCT 58.761 38.462 0.00 0.00 42.39 4.40
2549 5693 4.868734 GTGCTAATAGAGGTGGTGTTGTAC 59.131 45.833 0.00 0.00 0.00 2.90
2565 5709 5.732647 GTGTTGTACGTGTGAATAATGATGC 59.267 40.000 0.00 0.00 0.00 3.91
2587 5731 8.893219 ATGCAGAATAATCAGATTTTCGAGTA 57.107 30.769 0.00 4.61 0.00 2.59
2600 5744 5.996669 TTTTCGAGTACTTTTGGGAGTTC 57.003 39.130 0.00 0.00 0.00 3.01
2652 5796 8.485392 TCTGTATTATCATTTCATCCTGTCACA 58.515 33.333 0.00 0.00 0.00 3.58
2939 6083 4.060900 GTCGATGCAGGACATGATAACAT 58.939 43.478 14.02 0.00 39.84 2.71
2952 6096 4.574674 TGATAACATAGATGGGATGGCC 57.425 45.455 0.00 0.00 0.00 5.36
2958 6102 2.734755 TAGATGGGATGGCCAAACTG 57.265 50.000 10.96 0.00 35.15 3.16
2993 6137 4.541779 GCACAGATAGAGGTGAGATTACG 58.458 47.826 0.00 0.00 37.18 3.18
2997 6141 5.297278 ACAGATAGAGGTGAGATTACGTCAC 59.703 44.000 0.00 0.00 43.12 3.67
3029 6173 5.824904 ATTCTGTTGGATCGAATTCAAGG 57.175 39.130 6.22 0.00 0.00 3.61
3048 6192 3.403322 AGGGCTATAATTGAACCTGGGA 58.597 45.455 0.00 0.00 0.00 4.37
3068 6212 7.986553 TGGGATTTGTATGTTAATTCCCAAT 57.013 32.000 14.59 0.00 46.62 3.16
3101 6245 1.141449 GGCACTTGTGCAGCAAACA 59.859 52.632 24.34 0.00 36.53 2.83
3202 6346 7.059156 AGCATGGCTGGAATAGGATAATTATC 58.941 38.462 15.88 15.88 37.57 1.75
3276 6420 5.936686 TTGCTGTCAAGATTTGAAGAGAG 57.063 39.130 0.00 0.00 42.15 3.20
3349 6493 6.260271 GTCACTAGTTTTTACTGCACCTTTCT 59.740 38.462 0.00 0.00 0.00 2.52
3354 6498 4.929819 TTTTACTGCACCTTTCTTTCCC 57.070 40.909 0.00 0.00 0.00 3.97
3418 6562 6.605119 TCATCTTTTGGGGAAGGATCTAATC 58.395 40.000 0.00 0.00 32.27 1.75
3454 6598 9.793259 ACTGTCTTGAGATTTTCTAATTTGGTA 57.207 29.630 0.00 0.00 0.00 3.25
3504 6648 1.535462 ACGCAATGTGCAGGTACTTTC 59.465 47.619 0.61 0.00 45.36 2.62
3509 6653 4.615912 GCAATGTGCAGGTACTTTCGAAAT 60.616 41.667 11.70 4.70 44.26 2.17
3658 6802 9.987272 CATTTCTCTTAGGGAAAAAGAAACATT 57.013 29.630 11.57 0.00 38.40 2.71
3687 6831 8.893219 AAGTCATCATCGATAAAAGAATGCTA 57.107 30.769 0.00 0.00 0.00 3.49
3712 6856 5.625150 AGCCCTTTAGGTTACATCATCATC 58.375 41.667 0.00 0.00 38.26 2.92
3768 6914 6.358974 AAACTTTGGCTATGCAGGTTTTAT 57.641 33.333 0.00 0.00 0.00 1.40
3868 7014 6.638468 GGTTTTATGCTGCATGATTAGCTTAC 59.362 38.462 24.59 9.15 40.52 2.34
3877 7023 4.035675 GCATGATTAGCTTACAACTGGGTC 59.964 45.833 0.00 0.00 0.00 4.46
3934 7080 8.638873 CAGGGTTTTTAATGAAACTTTAGTCCT 58.361 33.333 3.46 0.00 39.05 3.85
4083 7229 2.969821 TTGCTATGGAACCACCTGTT 57.030 45.000 0.00 0.00 40.81 3.16
4141 7288 9.305555 AGGTAACCGATAGAGCACTATAATTTA 57.694 33.333 3.46 0.00 37.00 1.40
4173 7320 2.425143 ACCATGCACTTACCATCCTG 57.575 50.000 0.00 0.00 0.00 3.86
4179 7326 3.178046 TGCACTTACCATCCTGGAAGTA 58.822 45.455 0.00 3.03 40.96 2.24
4243 7390 0.111061 ATGCAGGTGAAGGTGCTCAA 59.889 50.000 0.00 0.00 40.54 3.02
4301 7448 4.553330 TGGTCAACTCAAAGATACCTCC 57.447 45.455 0.00 0.00 0.00 4.30
4305 7452 4.159135 GTCAACTCAAAGATACCTCCGGTA 59.841 45.833 0.00 0.00 42.80 4.02
4307 7454 5.246656 TCAACTCAAAGATACCTCCGGTAAA 59.753 40.000 0.00 0.00 41.85 2.01
4314 7461 4.091549 AGATACCTCCGGTAAAGTTGACA 58.908 43.478 0.00 0.00 41.85 3.58
4388 7535 3.061848 GCACGTTGGGATGGGGTG 61.062 66.667 0.00 0.00 0.00 4.61
4438 7585 7.005296 GGACTTATGGAGAATAGGTACTCTCA 58.995 42.308 10.89 0.00 39.95 3.27
4632 7782 5.808540 TGTTTCGTATGCATAGGTAACACTC 59.191 40.000 30.95 16.51 35.23 3.51
4767 8061 7.042523 GCATGCTTACTGTTTCAGAAAAACAAT 60.043 33.333 11.37 0.00 39.36 2.71
4768 8062 7.754069 TGCTTACTGTTTCAGAAAAACAATG 57.246 32.000 0.00 0.00 39.36 2.82
4912 8206 6.020281 GTCATGACATAGATCTCGACACAAAC 60.020 42.308 21.07 0.00 0.00 2.93
5252 8644 2.035704 CCATGAGATCGACCAGAAGAGG 59.964 54.545 0.00 0.00 0.00 3.69
5261 8653 0.768221 ACCAGAAGAGGGTTGCTCCA 60.768 55.000 1.43 0.00 34.10 3.86
5349 8741 0.554305 ATGGGATGATGGCTGCTGAA 59.446 50.000 0.00 0.00 0.00 3.02
5356 8753 0.321919 GATGGCTGCTGAACTGTGGA 60.322 55.000 0.00 0.00 0.00 4.02
5386 8783 5.734720 TCAATGTATTTCGCTTCCTTCTCT 58.265 37.500 0.00 0.00 0.00 3.10
5406 8803 6.521162 TCTCTGTGTGTAGCAAAATCTGTTA 58.479 36.000 0.00 0.00 0.00 2.41
5407 8804 6.989759 TCTCTGTGTGTAGCAAAATCTGTTAA 59.010 34.615 0.00 0.00 0.00 2.01
5427 8824 9.490663 CTGTTAAGTGAACTAAAACAAGAACTG 57.509 33.333 10.67 0.00 38.98 3.16
5541 8946 4.785346 ATGAGGATGGAGTAGTGCATTT 57.215 40.909 5.98 0.00 34.30 2.32
5581 8986 6.293790 GGTGACTTGTGTAAATTGGACCTTAC 60.294 42.308 0.00 0.00 0.00 2.34
5583 8988 7.012989 GTGACTTGTGTAAATTGGACCTTACTT 59.987 37.037 0.00 0.00 0.00 2.24
5585 8990 8.301252 ACTTGTGTAAATTGGACCTTACTTTT 57.699 30.769 0.00 0.00 0.00 2.27
5586 8991 8.755028 ACTTGTGTAAATTGGACCTTACTTTTT 58.245 29.630 0.00 0.00 0.00 1.94
5622 10530 7.967854 TCGCAAACATCTTATGGAAATGTTAAG 59.032 33.333 0.84 0.00 41.47 1.85
5653 10561 1.792367 TCGTGTTGTCATTCTCAAGCG 59.208 47.619 0.00 0.00 0.00 4.68
5680 10589 3.170791 TGATTCCGCAAAGCAAACAAA 57.829 38.095 0.00 0.00 28.28 2.83
5729 10639 4.519350 AGTCCGGAATTTTCTGTTCCTTTC 59.481 41.667 5.23 0.00 42.36 2.62
5859 10770 4.159693 AGAAACACATACACCTCGCTATCA 59.840 41.667 0.00 0.00 0.00 2.15
5883 10794 2.600173 CGTTGCCACCCACCCATT 60.600 61.111 0.00 0.00 0.00 3.16
5943 10854 4.133373 CCTGATGGGCTGGGGGTG 62.133 72.222 0.00 0.00 32.31 4.61
6036 10947 4.202212 GGTGACTATTGGTTTTTGTTGCCT 60.202 41.667 0.00 0.00 0.00 4.75
6109 11020 4.682563 TGGCCTTATGGAATGAAAAAGGA 58.317 39.130 3.32 0.00 39.26 3.36
6131 11042 9.579932 AAGGAGTGAAGTCTAATTTCTTTCATT 57.420 29.630 0.00 0.00 0.00 2.57
6157 11068 6.009589 ACCATGATGAAATGTCCAGTTTACA 58.990 36.000 0.00 0.00 0.00 2.41
6224 11142 8.795513 CATATGAATTATTTGCACATACAGGGA 58.204 33.333 0.00 0.00 0.00 4.20
6228 11146 8.196771 TGAATTATTTGCACATACAGGGAATTC 58.803 33.333 0.00 0.00 32.69 2.17
6418 11338 3.706373 GGAGCCTCGCCAGGAACA 61.706 66.667 0.00 0.00 43.65 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.014840 GGCATCTGATAAATTGATCCACCAAT 60.015 38.462 0.00 0.00 38.30 3.16
1 2 5.302568 GGCATCTGATAAATTGATCCACCAA 59.697 40.000 0.00 0.00 0.00 3.67
2 3 4.828939 GGCATCTGATAAATTGATCCACCA 59.171 41.667 0.00 0.00 0.00 4.17
3 4 4.828939 TGGCATCTGATAAATTGATCCACC 59.171 41.667 0.00 0.00 0.00 4.61
4 5 6.183360 TGTTGGCATCTGATAAATTGATCCAC 60.183 38.462 0.00 0.00 0.00 4.02
5 6 5.892686 TGTTGGCATCTGATAAATTGATCCA 59.107 36.000 0.00 0.00 0.00 3.41
6 7 6.395426 TGTTGGCATCTGATAAATTGATCC 57.605 37.500 0.00 0.00 0.00 3.36
21 22 2.421725 TCCTATGAGGGATGTTGGCAT 58.578 47.619 0.00 0.00 35.59 4.40
22 23 1.891933 TCCTATGAGGGATGTTGGCA 58.108 50.000 0.00 0.00 35.59 4.92
23 24 3.217626 CTTTCCTATGAGGGATGTTGGC 58.782 50.000 0.00 0.00 35.59 4.52
24 25 4.080356 TGACTTTCCTATGAGGGATGTTGG 60.080 45.833 0.00 0.00 31.87 3.77
25 26 5.102953 TGACTTTCCTATGAGGGATGTTG 57.897 43.478 0.00 0.00 31.87 3.33
26 27 5.398353 CCATGACTTTCCTATGAGGGATGTT 60.398 44.000 0.00 0.00 31.87 2.71
27 28 4.103785 CCATGACTTTCCTATGAGGGATGT 59.896 45.833 0.00 0.00 34.21 3.06
28 29 4.103785 ACCATGACTTTCCTATGAGGGATG 59.896 45.833 0.00 0.00 35.59 3.51
29 30 4.310740 ACCATGACTTTCCTATGAGGGAT 58.689 43.478 0.00 0.00 35.59 3.85
30 31 3.711704 GACCATGACTTTCCTATGAGGGA 59.288 47.826 0.00 0.00 35.59 4.20
31 32 3.713764 AGACCATGACTTTCCTATGAGGG 59.286 47.826 0.00 0.00 35.59 4.30
32 33 4.163078 ACAGACCATGACTTTCCTATGAGG 59.837 45.833 0.00 0.00 36.46 3.86
33 34 5.128499 AGACAGACCATGACTTTCCTATGAG 59.872 44.000 0.00 0.00 29.00 2.90
34 35 5.026121 AGACAGACCATGACTTTCCTATGA 58.974 41.667 0.00 0.00 29.00 2.15
35 36 5.105187 TGAGACAGACCATGACTTTCCTATG 60.105 44.000 0.00 0.00 33.89 2.23
36 37 5.026121 TGAGACAGACCATGACTTTCCTAT 58.974 41.667 0.00 0.00 33.89 2.57
37 38 4.416516 TGAGACAGACCATGACTTTCCTA 58.583 43.478 0.00 0.00 33.89 2.94
38 39 3.242867 TGAGACAGACCATGACTTTCCT 58.757 45.455 0.00 0.00 33.89 3.36
39 40 3.685139 TGAGACAGACCATGACTTTCC 57.315 47.619 0.00 0.00 33.89 3.13
40 41 4.816385 TGTTTGAGACAGACCATGACTTTC 59.184 41.667 0.00 0.00 33.89 2.62
41 42 4.780815 TGTTTGAGACAGACCATGACTTT 58.219 39.130 0.00 0.00 33.89 2.66
42 43 4.422073 TGTTTGAGACAGACCATGACTT 57.578 40.909 0.00 0.00 33.89 3.01
43 44 4.101585 TCTTGTTTGAGACAGACCATGACT 59.898 41.667 0.00 0.00 39.94 3.41
44 45 4.380531 TCTTGTTTGAGACAGACCATGAC 58.619 43.478 0.00 0.00 39.94 3.06
45 46 4.344968 TCTCTTGTTTGAGACAGACCATGA 59.655 41.667 0.00 0.00 39.94 3.07
46 47 4.635223 TCTCTTGTTTGAGACAGACCATG 58.365 43.478 0.00 0.00 39.94 3.66
47 48 4.963318 TCTCTTGTTTGAGACAGACCAT 57.037 40.909 0.00 0.00 39.94 3.55
48 49 4.753516 TTCTCTTGTTTGAGACAGACCA 57.246 40.909 0.00 0.00 42.11 4.02
49 50 5.561725 GCATTTCTCTTGTTTGAGACAGACC 60.562 44.000 0.00 0.00 42.11 3.85
50 51 5.447573 GCATTTCTCTTGTTTGAGACAGAC 58.552 41.667 0.00 0.00 42.11 3.51
51 52 4.516698 GGCATTTCTCTTGTTTGAGACAGA 59.483 41.667 0.00 0.00 42.11 3.41
52 53 4.320788 GGGCATTTCTCTTGTTTGAGACAG 60.321 45.833 0.00 0.00 42.11 3.51
53 54 3.569701 GGGCATTTCTCTTGTTTGAGACA 59.430 43.478 0.00 0.00 42.11 3.41
54 55 3.365364 CGGGCATTTCTCTTGTTTGAGAC 60.365 47.826 0.00 0.00 42.11 3.36
55 56 2.813754 CGGGCATTTCTCTTGTTTGAGA 59.186 45.455 0.00 0.00 40.87 3.27
56 57 2.554032 ACGGGCATTTCTCTTGTTTGAG 59.446 45.455 0.00 0.00 35.52 3.02
57 58 2.293122 CACGGGCATTTCTCTTGTTTGA 59.707 45.455 0.00 0.00 0.00 2.69
58 59 2.034558 ACACGGGCATTTCTCTTGTTTG 59.965 45.455 0.00 0.00 0.00 2.93
59 60 2.293399 GACACGGGCATTTCTCTTGTTT 59.707 45.455 0.00 0.00 0.00 2.83
60 61 1.880027 GACACGGGCATTTCTCTTGTT 59.120 47.619 0.00 0.00 0.00 2.83
61 62 1.072331 AGACACGGGCATTTCTCTTGT 59.928 47.619 0.00 0.00 0.00 3.16
62 63 1.813513 AGACACGGGCATTTCTCTTG 58.186 50.000 0.00 0.00 0.00 3.02
63 64 2.427506 GAAGACACGGGCATTTCTCTT 58.572 47.619 0.00 0.00 0.00 2.85
64 65 1.339151 GGAAGACACGGGCATTTCTCT 60.339 52.381 0.00 0.00 0.00 3.10
65 66 1.087501 GGAAGACACGGGCATTTCTC 58.912 55.000 0.00 0.00 0.00 2.87
66 67 0.673644 CGGAAGACACGGGCATTTCT 60.674 55.000 0.00 0.00 0.00 2.52
67 68 0.672401 TCGGAAGACACGGGCATTTC 60.672 55.000 0.00 0.00 33.31 2.17
68 69 1.373435 TCGGAAGACACGGGCATTT 59.627 52.632 0.00 0.00 33.31 2.32
69 70 3.065306 TCGGAAGACACGGGCATT 58.935 55.556 0.00 0.00 33.31 3.56
79 80 1.372997 GCGCTCTTGTGTCGGAAGA 60.373 57.895 0.00 0.00 38.16 2.87
80 81 0.109272 TAGCGCTCTTGTGTCGGAAG 60.109 55.000 16.34 0.00 0.00 3.46
81 82 0.388134 GTAGCGCTCTTGTGTCGGAA 60.388 55.000 16.34 0.00 0.00 4.30
82 83 1.211969 GTAGCGCTCTTGTGTCGGA 59.788 57.895 16.34 0.00 0.00 4.55
83 84 0.458543 ATGTAGCGCTCTTGTGTCGG 60.459 55.000 16.34 0.00 0.00 4.79
84 85 0.917259 GATGTAGCGCTCTTGTGTCG 59.083 55.000 16.34 0.00 0.00 4.35
85 86 1.281899 GGATGTAGCGCTCTTGTGTC 58.718 55.000 16.34 4.85 0.00 3.67
86 87 0.608130 TGGATGTAGCGCTCTTGTGT 59.392 50.000 16.34 0.00 0.00 3.72
87 88 1.725641 TTGGATGTAGCGCTCTTGTG 58.274 50.000 16.34 0.00 0.00 3.33
88 89 2.555199 GATTGGATGTAGCGCTCTTGT 58.445 47.619 16.34 0.00 0.00 3.16
89 90 1.869767 GGATTGGATGTAGCGCTCTTG 59.130 52.381 16.34 0.00 0.00 3.02
90 91 1.765314 AGGATTGGATGTAGCGCTCTT 59.235 47.619 16.34 3.88 0.00 2.85
91 92 1.418334 AGGATTGGATGTAGCGCTCT 58.582 50.000 16.34 0.00 0.00 4.09
92 93 2.139118 GAAGGATTGGATGTAGCGCTC 58.861 52.381 16.34 6.54 0.00 5.03
93 94 1.765314 AGAAGGATTGGATGTAGCGCT 59.235 47.619 17.26 17.26 0.00 5.92
94 95 2.246719 AGAAGGATTGGATGTAGCGC 57.753 50.000 0.00 0.00 0.00 5.92
95 96 5.360591 AGTTTAGAAGGATTGGATGTAGCG 58.639 41.667 0.00 0.00 0.00 4.26
96 97 8.732746 TTAAGTTTAGAAGGATTGGATGTAGC 57.267 34.615 0.00 0.00 0.00 3.58
102 103 9.185680 GCCTTAATTAAGTTTAGAAGGATTGGA 57.814 33.333 20.99 0.00 36.37 3.53
103 104 8.414003 GGCCTTAATTAAGTTTAGAAGGATTGG 58.586 37.037 20.99 5.48 36.37 3.16
104 105 9.190317 AGGCCTTAATTAAGTTTAGAAGGATTG 57.810 33.333 20.99 5.08 36.37 2.67
105 106 9.769677 AAGGCCTTAATTAAGTTTAGAAGGATT 57.230 29.630 18.87 4.97 36.37 3.01
106 107 9.190317 CAAGGCCTTAATTAAGTTTAGAAGGAT 57.810 33.333 20.00 0.00 36.37 3.24
107 108 8.168058 ACAAGGCCTTAATTAAGTTTAGAAGGA 58.832 33.333 20.00 0.00 36.37 3.36
108 109 8.349568 ACAAGGCCTTAATTAAGTTTAGAAGG 57.650 34.615 20.00 9.25 37.17 3.46
110 111 9.974980 CAAACAAGGCCTTAATTAAGTTTAGAA 57.025 29.630 20.00 0.00 0.00 2.10
111 112 8.581578 CCAAACAAGGCCTTAATTAAGTTTAGA 58.418 33.333 20.00 0.00 0.00 2.10
112 113 8.364894 ACCAAACAAGGCCTTAATTAAGTTTAG 58.635 33.333 20.00 17.22 0.00 1.85
113 114 8.252624 ACCAAACAAGGCCTTAATTAAGTTTA 57.747 30.769 20.00 0.00 0.00 2.01
114 115 7.131907 ACCAAACAAGGCCTTAATTAAGTTT 57.868 32.000 20.00 19.17 0.00 2.66
115 116 6.740944 ACCAAACAAGGCCTTAATTAAGTT 57.259 33.333 20.00 14.11 0.00 2.66
116 117 6.239487 GGAACCAAACAAGGCCTTAATTAAGT 60.239 38.462 20.00 7.99 0.00 2.24
117 118 6.163476 GGAACCAAACAAGGCCTTAATTAAG 58.837 40.000 20.00 16.90 0.00 1.85
118 119 5.602978 TGGAACCAAACAAGGCCTTAATTAA 59.397 36.000 20.00 0.00 0.00 1.40
119 120 5.148502 TGGAACCAAACAAGGCCTTAATTA 58.851 37.500 20.00 0.00 0.00 1.40
120 121 3.970640 TGGAACCAAACAAGGCCTTAATT 59.029 39.130 20.00 13.08 0.00 1.40
121 122 3.582164 TGGAACCAAACAAGGCCTTAAT 58.418 40.909 20.00 6.65 0.00 1.40
122 123 3.033659 TGGAACCAAACAAGGCCTTAA 57.966 42.857 20.00 0.00 0.00 1.85
123 124 2.757894 TGGAACCAAACAAGGCCTTA 57.242 45.000 20.00 0.00 0.00 2.69
124 125 1.872773 TTGGAACCAAACAAGGCCTT 58.127 45.000 13.78 13.78 32.44 4.35
125 126 1.872773 TTTGGAACCAAACAAGGCCT 58.127 45.000 14.02 0.00 40.51 5.19
126 127 2.928801 ATTTGGAACCAAACAAGGCC 57.071 45.000 19.23 0.00 46.80 5.19
130 131 5.422331 TGGTGACTTATTTGGAACCAAACAA 59.578 36.000 19.23 14.05 46.80 2.83
131 132 4.956700 TGGTGACTTATTTGGAACCAAACA 59.043 37.500 19.23 7.15 46.80 2.83
132 133 5.523438 TGGTGACTTATTTGGAACCAAAC 57.477 39.130 19.23 8.57 46.80 2.93
133 134 5.659079 AGTTGGTGACTTATTTGGAACCAAA 59.341 36.000 19.15 19.15 46.21 3.28
134 135 5.205056 AGTTGGTGACTTATTTGGAACCAA 58.795 37.500 1.83 1.83 43.50 3.67
135 136 4.798882 AGTTGGTGACTTATTTGGAACCA 58.201 39.130 0.00 0.00 33.92 3.67
136 137 5.784578 AAGTTGGTGACTTATTTGGAACC 57.215 39.130 0.00 0.00 46.61 3.62
177 178 9.051679 GGTCTGTTTGGCAAAATAAGTTATTTT 57.948 29.630 22.38 22.38 46.23 1.82
178 179 7.659799 GGGTCTGTTTGGCAAAATAAGTTATTT 59.340 33.333 15.29 13.95 39.92 1.40
179 180 7.158697 GGGTCTGTTTGGCAAAATAAGTTATT 58.841 34.615 15.29 2.10 0.00 1.40
180 181 6.268847 TGGGTCTGTTTGGCAAAATAAGTTAT 59.731 34.615 15.29 0.00 0.00 1.89
181 182 5.598830 TGGGTCTGTTTGGCAAAATAAGTTA 59.401 36.000 15.29 0.00 0.00 2.24
182 183 4.407296 TGGGTCTGTTTGGCAAAATAAGTT 59.593 37.500 15.29 0.00 0.00 2.66
183 184 3.964031 TGGGTCTGTTTGGCAAAATAAGT 59.036 39.130 15.29 0.00 0.00 2.24
184 185 4.599047 TGGGTCTGTTTGGCAAAATAAG 57.401 40.909 15.29 12.47 0.00 1.73
185 186 4.407296 AGTTGGGTCTGTTTGGCAAAATAA 59.593 37.500 15.29 2.73 0.00 1.40
186 187 3.964031 AGTTGGGTCTGTTTGGCAAAATA 59.036 39.130 15.29 6.13 0.00 1.40
187 188 2.771372 AGTTGGGTCTGTTTGGCAAAAT 59.229 40.909 15.29 0.00 0.00 1.82
188 189 2.183679 AGTTGGGTCTGTTTGGCAAAA 58.816 42.857 15.29 4.59 0.00 2.44
189 190 1.859302 AGTTGGGTCTGTTTGGCAAA 58.141 45.000 8.93 8.93 0.00 3.68
190 191 1.859302 AAGTTGGGTCTGTTTGGCAA 58.141 45.000 0.00 0.00 0.00 4.52
191 192 2.738587 TAAGTTGGGTCTGTTTGGCA 57.261 45.000 0.00 0.00 0.00 4.92
192 193 4.765339 ACTTATAAGTTGGGTCTGTTTGGC 59.235 41.667 12.50 0.00 35.21 4.52
193 194 6.001460 TGACTTATAAGTTGGGTCTGTTTGG 58.999 40.000 18.96 0.00 39.88 3.28
194 195 6.072673 GGTGACTTATAAGTTGGGTCTGTTTG 60.073 42.308 18.96 0.00 39.88 2.93
195 196 6.002082 GGTGACTTATAAGTTGGGTCTGTTT 58.998 40.000 18.96 0.00 39.88 2.83
196 197 5.514310 GGGTGACTTATAAGTTGGGTCTGTT 60.514 44.000 18.96 0.00 39.88 3.16
197 198 4.019591 GGGTGACTTATAAGTTGGGTCTGT 60.020 45.833 18.96 0.00 39.88 3.41
198 199 4.514401 GGGTGACTTATAAGTTGGGTCTG 58.486 47.826 18.96 0.00 39.88 3.51
199 200 3.522343 GGGGTGACTTATAAGTTGGGTCT 59.478 47.826 18.96 0.00 39.88 3.85
200 201 3.264964 TGGGGTGACTTATAAGTTGGGTC 59.735 47.826 18.96 7.15 39.88 4.46
201 202 3.261962 TGGGGTGACTTATAAGTTGGGT 58.738 45.455 18.96 0.00 39.88 4.51
202 203 4.014406 GTTGGGGTGACTTATAAGTTGGG 58.986 47.826 18.96 0.00 39.88 4.12
203 204 4.918588 AGTTGGGGTGACTTATAAGTTGG 58.081 43.478 18.96 0.00 39.88 3.77
204 205 9.675464 TTATAAGTTGGGGTGACTTATAAGTTG 57.325 33.333 18.96 0.00 46.80 3.16
209 210 8.612486 TGACTTATAAGTTGGGGTGACTTATA 57.388 34.615 18.96 10.90 44.36 0.98
210 211 7.504926 TGACTTATAAGTTGGGGTGACTTAT 57.495 36.000 18.96 12.48 46.52 1.73
211 212 6.938698 TGACTTATAAGTTGGGGTGACTTA 57.061 37.500 18.96 0.00 42.07 2.24
212 213 5.836024 TGACTTATAAGTTGGGGTGACTT 57.164 39.130 18.96 0.00 39.88 3.01
213 214 7.504926 TTATGACTTATAAGTTGGGGTGACT 57.495 36.000 18.96 0.00 39.88 3.41
214 215 7.787725 CTTATGACTTATAAGTTGGGGTGAC 57.212 40.000 18.96 4.87 42.11 3.67
225 226 6.354130 GGGTGGAGCAACTTATGACTTATAA 58.646 40.000 0.00 0.00 0.00 0.98
226 227 5.163237 GGGGTGGAGCAACTTATGACTTATA 60.163 44.000 0.00 0.00 0.00 0.98
227 228 4.385310 GGGGTGGAGCAACTTATGACTTAT 60.385 45.833 0.00 0.00 0.00 1.73
228 229 3.054655 GGGGTGGAGCAACTTATGACTTA 60.055 47.826 0.00 0.00 0.00 2.24
229 230 2.290960 GGGGTGGAGCAACTTATGACTT 60.291 50.000 0.00 0.00 0.00 3.01
230 231 1.282157 GGGGTGGAGCAACTTATGACT 59.718 52.381 0.00 0.00 0.00 3.41
231 232 1.004277 TGGGGTGGAGCAACTTATGAC 59.996 52.381 0.00 0.00 0.00 3.06
232 233 1.367346 TGGGGTGGAGCAACTTATGA 58.633 50.000 0.00 0.00 0.00 2.15
233 234 1.818674 GTTGGGGTGGAGCAACTTATG 59.181 52.381 0.00 0.00 0.00 1.90
234 235 1.710809 AGTTGGGGTGGAGCAACTTAT 59.289 47.619 0.00 0.00 34.63 1.73
235 236 1.145571 AGTTGGGGTGGAGCAACTTA 58.854 50.000 0.00 0.00 34.63 2.24
236 237 0.261696 AAGTTGGGGTGGAGCAACTT 59.738 50.000 0.00 0.00 41.36 2.66
237 238 1.145571 TAAGTTGGGGTGGAGCAACT 58.854 50.000 0.00 0.00 39.27 3.16
238 239 1.989706 TTAAGTTGGGGTGGAGCAAC 58.010 50.000 0.00 0.00 0.00 4.17
239 240 2.696187 GTTTTAAGTTGGGGTGGAGCAA 59.304 45.455 0.00 0.00 0.00 3.91
240 241 2.091555 AGTTTTAAGTTGGGGTGGAGCA 60.092 45.455 0.00 0.00 0.00 4.26
241 242 2.594131 AGTTTTAAGTTGGGGTGGAGC 58.406 47.619 0.00 0.00 0.00 4.70
242 243 7.668469 ACTTATAAGTTTTAAGTTGGGGTGGAG 59.332 37.037 12.50 0.00 36.70 3.86
243 244 7.528675 ACTTATAAGTTTTAAGTTGGGGTGGA 58.471 34.615 12.50 0.00 36.70 4.02
244 245 7.449086 TGACTTATAAGTTTTAAGTTGGGGTGG 59.551 37.037 18.96 0.00 39.40 4.61
245 246 8.294577 GTGACTTATAAGTTTTAAGTTGGGGTG 58.705 37.037 18.96 0.00 39.40 4.61
246 247 7.449395 GGTGACTTATAAGTTTTAAGTTGGGGT 59.551 37.037 18.96 0.00 39.40 4.95
247 248 7.094075 GGGTGACTTATAAGTTTTAAGTTGGGG 60.094 40.741 18.96 0.00 39.40 4.96
248 249 7.094075 GGGGTGACTTATAAGTTTTAAGTTGGG 60.094 40.741 18.96 0.00 39.40 4.12
249 250 7.668469 AGGGGTGACTTATAAGTTTTAAGTTGG 59.332 37.037 18.96 0.00 39.40 3.77
250 251 8.631480 AGGGGTGACTTATAAGTTTTAAGTTG 57.369 34.615 18.96 0.00 39.40 3.16
251 252 9.650714 AAAGGGGTGACTTATAAGTTTTAAGTT 57.349 29.630 18.96 7.30 39.40 2.66
252 253 9.650714 AAAAGGGGTGACTTATAAGTTTTAAGT 57.349 29.630 18.96 15.86 41.41 2.24
255 256 8.361889 GCAAAAAGGGGTGACTTATAAGTTTTA 58.638 33.333 18.96 6.80 39.88 1.52
256 257 7.147637 TGCAAAAAGGGGTGACTTATAAGTTTT 60.148 33.333 18.96 11.32 39.88 2.43
257 258 6.325286 TGCAAAAAGGGGTGACTTATAAGTTT 59.675 34.615 18.96 5.93 39.88 2.66
258 259 5.836358 TGCAAAAAGGGGTGACTTATAAGTT 59.164 36.000 18.96 3.63 39.88 2.66
259 260 5.390387 TGCAAAAAGGGGTGACTTATAAGT 58.610 37.500 18.05 18.05 43.16 2.24
260 261 5.975693 TGCAAAAAGGGGTGACTTATAAG 57.024 39.130 11.05 11.05 0.00 1.73
261 262 5.186797 CCATGCAAAAAGGGGTGACTTATAA 59.813 40.000 0.00 0.00 0.00 0.98
262 263 4.709397 CCATGCAAAAAGGGGTGACTTATA 59.291 41.667 0.00 0.00 0.00 0.98
263 264 3.515104 CCATGCAAAAAGGGGTGACTTAT 59.485 43.478 0.00 0.00 0.00 1.73
264 265 2.896685 CCATGCAAAAAGGGGTGACTTA 59.103 45.455 0.00 0.00 0.00 2.24
265 266 1.693606 CCATGCAAAAAGGGGTGACTT 59.306 47.619 0.00 0.00 0.00 3.01
266 267 1.341080 CCATGCAAAAAGGGGTGACT 58.659 50.000 0.00 0.00 0.00 3.41
267 268 0.321346 CCCATGCAAAAAGGGGTGAC 59.679 55.000 8.56 0.00 38.98 3.67
268 269 2.757313 CCCATGCAAAAAGGGGTGA 58.243 52.632 8.56 0.00 38.98 4.02
273 274 0.321346 GTGGGACCCATGCAAAAAGG 59.679 55.000 18.51 0.00 35.28 3.11
274 275 0.321346 GGTGGGACCCATGCAAAAAG 59.679 55.000 18.51 0.00 35.28 2.27
275 276 0.399091 TGGTGGGACCCATGCAAAAA 60.399 50.000 18.51 0.00 37.50 1.94
276 277 1.118356 GTGGTGGGACCCATGCAAAA 61.118 55.000 18.51 0.00 37.50 2.44
277 278 1.532794 GTGGTGGGACCCATGCAAA 60.533 57.895 18.51 0.00 37.50 3.68
278 279 2.117206 GTGGTGGGACCCATGCAA 59.883 61.111 18.51 0.00 37.50 4.08
279 280 3.978193 GGTGGTGGGACCCATGCA 61.978 66.667 18.51 0.00 37.50 3.96
280 281 2.730129 AAAGGTGGTGGGACCCATGC 62.730 60.000 18.51 9.82 37.50 4.06
281 282 0.701731 TAAAGGTGGTGGGACCCATG 59.298 55.000 18.51 0.00 37.50 3.66
282 283 0.702316 GTAAAGGTGGTGGGACCCAT 59.298 55.000 18.51 0.32 37.50 4.00
283 284 0.698198 TGTAAAGGTGGTGGGACCCA 60.698 55.000 9.95 9.95 37.50 4.51
284 285 0.702316 ATGTAAAGGTGGTGGGACCC 59.298 55.000 2.45 2.45 37.50 4.46
285 286 3.724732 TTATGTAAAGGTGGTGGGACC 57.275 47.619 0.00 0.00 39.22 4.46
306 307 5.673514 AGCACACATTTCCATCTTGTTTTT 58.326 33.333 0.00 0.00 0.00 1.94
307 308 5.163426 TGAGCACACATTTCCATCTTGTTTT 60.163 36.000 0.00 0.00 0.00 2.43
308 309 4.341806 TGAGCACACATTTCCATCTTGTTT 59.658 37.500 0.00 0.00 0.00 2.83
309 310 3.890756 TGAGCACACATTTCCATCTTGTT 59.109 39.130 0.00 0.00 0.00 2.83
310 311 3.489355 TGAGCACACATTTCCATCTTGT 58.511 40.909 0.00 0.00 0.00 3.16
311 312 3.754850 TCTGAGCACACATTTCCATCTTG 59.245 43.478 0.00 0.00 0.00 3.02
312 313 4.025040 TCTGAGCACACATTTCCATCTT 57.975 40.909 0.00 0.00 0.00 2.40
313 314 3.708403 TCTGAGCACACATTTCCATCT 57.292 42.857 0.00 0.00 0.00 2.90
314 315 5.587844 AGTTATCTGAGCACACATTTCCATC 59.412 40.000 0.00 0.00 0.00 3.51
315 316 5.503927 AGTTATCTGAGCACACATTTCCAT 58.496 37.500 0.00 0.00 0.00 3.41
316 317 4.910195 AGTTATCTGAGCACACATTTCCA 58.090 39.130 0.00 0.00 0.00 3.53
317 318 5.886960 AAGTTATCTGAGCACACATTTCC 57.113 39.130 0.00 0.00 0.00 3.13
319 320 9.672673 ACTTATAAGTTATCTGAGCACACATTT 57.327 29.630 12.50 0.00 35.21 2.32
320 321 9.319143 GACTTATAAGTTATCTGAGCACACATT 57.681 33.333 18.96 0.00 39.88 2.71
321 322 8.478066 TGACTTATAAGTTATCTGAGCACACAT 58.522 33.333 18.96 0.00 39.88 3.21
322 323 7.836842 TGACTTATAAGTTATCTGAGCACACA 58.163 34.615 18.96 5.32 39.88 3.72
323 324 7.436673 CCTGACTTATAAGTTATCTGAGCACAC 59.563 40.741 18.96 2.86 39.88 3.82
324 325 7.124298 ACCTGACTTATAAGTTATCTGAGCACA 59.876 37.037 18.96 7.66 39.88 4.57
325 326 7.436673 CACCTGACTTATAAGTTATCTGAGCAC 59.563 40.741 18.96 3.52 39.88 4.40
326 327 7.342026 TCACCTGACTTATAAGTTATCTGAGCA 59.658 37.037 18.96 8.95 39.88 4.26
327 328 7.717568 TCACCTGACTTATAAGTTATCTGAGC 58.282 38.462 18.96 4.87 39.88 4.26
335 336 9.227777 GTTTGGTTATCACCTGACTTATAAGTT 57.772 33.333 18.96 4.46 44.61 2.66
336 337 8.380099 TGTTTGGTTATCACCTGACTTATAAGT 58.620 33.333 18.05 18.05 44.61 2.24
337 338 8.786826 TGTTTGGTTATCACCTGACTTATAAG 57.213 34.615 11.05 11.05 44.61 1.73
338 339 8.598916 TCTGTTTGGTTATCACCTGACTTATAA 58.401 33.333 0.00 0.00 44.61 0.98
339 340 8.038944 GTCTGTTTGGTTATCACCTGACTTATA 58.961 37.037 0.00 0.00 44.61 0.98
340 341 6.879458 GTCTGTTTGGTTATCACCTGACTTAT 59.121 38.462 0.00 0.00 44.61 1.73
341 342 6.228258 GTCTGTTTGGTTATCACCTGACTTA 58.772 40.000 0.00 0.00 44.61 2.24
342 343 5.063880 GTCTGTTTGGTTATCACCTGACTT 58.936 41.667 0.00 0.00 44.61 3.01
343 344 4.642429 GTCTGTTTGGTTATCACCTGACT 58.358 43.478 0.00 0.00 44.61 3.41
344 345 3.432252 CGTCTGTTTGGTTATCACCTGAC 59.568 47.826 0.00 0.00 44.61 3.51
345 346 3.070446 ACGTCTGTTTGGTTATCACCTGA 59.930 43.478 0.00 0.00 44.61 3.86
346 347 3.186409 CACGTCTGTTTGGTTATCACCTG 59.814 47.826 0.00 0.00 44.61 4.00
347 348 3.070446 TCACGTCTGTTTGGTTATCACCT 59.930 43.478 0.00 0.00 44.61 4.00
348 349 3.185797 GTCACGTCTGTTTGGTTATCACC 59.814 47.826 0.00 0.00 44.56 4.02
349 350 4.056050 AGTCACGTCTGTTTGGTTATCAC 58.944 43.478 0.00 0.00 0.00 3.06
350 351 4.330944 AGTCACGTCTGTTTGGTTATCA 57.669 40.909 0.00 0.00 0.00 2.15
351 352 6.963049 ATAAGTCACGTCTGTTTGGTTATC 57.037 37.500 0.00 0.00 0.00 1.75
352 353 8.092687 ACTTATAAGTCACGTCTGTTTGGTTAT 58.907 33.333 12.50 0.00 32.86 1.89
353 354 7.436118 ACTTATAAGTCACGTCTGTTTGGTTA 58.564 34.615 12.50 0.00 32.86 2.85
354 355 6.285990 ACTTATAAGTCACGTCTGTTTGGTT 58.714 36.000 12.50 0.00 32.86 3.67
355 356 5.850614 ACTTATAAGTCACGTCTGTTTGGT 58.149 37.500 12.50 0.00 32.86 3.67
369 370 9.269453 GTGACTTAAAACCAGTGACTTATAAGT 57.731 33.333 18.05 18.05 43.16 2.24
370 371 8.718734 GGTGACTTAAAACCAGTGACTTATAAG 58.281 37.037 11.05 11.05 36.41 1.73
371 372 8.434392 AGGTGACTTAAAACCAGTGACTTATAA 58.566 33.333 0.00 0.00 37.44 0.98
372 373 7.876068 CAGGTGACTTAAAACCAGTGACTTATA 59.124 37.037 0.00 0.00 40.21 0.98
373 374 6.710744 CAGGTGACTTAAAACCAGTGACTTAT 59.289 38.462 0.00 0.00 40.21 1.73
374 375 6.053005 CAGGTGACTTAAAACCAGTGACTTA 58.947 40.000 0.00 0.00 40.21 2.24
375 376 4.881850 CAGGTGACTTAAAACCAGTGACTT 59.118 41.667 0.00 0.00 40.21 3.01
376 377 4.163458 TCAGGTGACTTAAAACCAGTGACT 59.837 41.667 0.00 0.00 40.21 3.41
377 378 4.272748 GTCAGGTGACTTAAAACCAGTGAC 59.727 45.833 2.72 6.43 41.65 3.67
378 379 4.448210 GTCAGGTGACTTAAAACCAGTGA 58.552 43.478 2.72 0.00 41.65 3.41
379 380 4.813296 GTCAGGTGACTTAAAACCAGTG 57.187 45.455 2.72 0.00 41.65 3.66
407 408 4.015872 TGGTTCCAATAAGTCACCTGAC 57.984 45.455 0.00 0.00 45.08 3.51
408 409 4.715534 TTGGTTCCAATAAGTCACCTGA 57.284 40.909 0.00 0.00 0.00 3.86
409 410 4.582656 TGTTTGGTTCCAATAAGTCACCTG 59.417 41.667 5.06 0.00 0.00 4.00
410 411 4.798882 TGTTTGGTTCCAATAAGTCACCT 58.201 39.130 5.06 0.00 0.00 4.00
411 412 4.022329 CCTGTTTGGTTCCAATAAGTCACC 60.022 45.833 5.06 0.00 0.00 4.02
412 413 4.558697 GCCTGTTTGGTTCCAATAAGTCAC 60.559 45.833 5.06 0.71 38.35 3.67
413 414 3.572255 GCCTGTTTGGTTCCAATAAGTCA 59.428 43.478 5.06 1.06 38.35 3.41
414 415 3.056821 GGCCTGTTTGGTTCCAATAAGTC 60.057 47.826 5.06 0.00 38.35 3.01
415 416 2.897326 GGCCTGTTTGGTTCCAATAAGT 59.103 45.455 5.06 0.00 38.35 2.24
416 417 2.233676 GGGCCTGTTTGGTTCCAATAAG 59.766 50.000 0.84 6.17 38.35 1.73
417 418 2.158234 AGGGCCTGTTTGGTTCCAATAA 60.158 45.455 4.50 0.00 38.35 1.40
418 419 1.431243 AGGGCCTGTTTGGTTCCAATA 59.569 47.619 4.50 0.00 38.35 1.90
419 420 0.190815 AGGGCCTGTTTGGTTCCAAT 59.809 50.000 4.50 0.00 38.35 3.16
420 421 0.854218 TAGGGCCTGTTTGGTTCCAA 59.146 50.000 18.53 0.00 38.35 3.53
421 422 0.854218 TTAGGGCCTGTTTGGTTCCA 59.146 50.000 18.53 0.00 38.35 3.53
422 423 1.893137 CTTTAGGGCCTGTTTGGTTCC 59.107 52.381 18.53 0.00 38.35 3.62
423 424 2.820197 CTCTTTAGGGCCTGTTTGGTTC 59.180 50.000 18.53 0.00 38.35 3.62
424 425 2.445525 TCTCTTTAGGGCCTGTTTGGTT 59.554 45.455 18.53 0.00 38.35 3.67
425 426 2.062636 TCTCTTTAGGGCCTGTTTGGT 58.937 47.619 18.53 0.00 38.35 3.67
426 427 2.879103 TCTCTTTAGGGCCTGTTTGG 57.121 50.000 18.53 3.76 39.35 3.28
427 428 3.084786 CCTTCTCTTTAGGGCCTGTTTG 58.915 50.000 18.53 3.74 0.00 2.93
428 429 2.555448 GCCTTCTCTTTAGGGCCTGTTT 60.555 50.000 18.53 0.00 38.77 2.83
429 430 1.004862 GCCTTCTCTTTAGGGCCTGTT 59.995 52.381 18.53 0.00 38.77 3.16
430 431 0.621082 GCCTTCTCTTTAGGGCCTGT 59.379 55.000 18.53 0.00 38.77 4.00
431 432 3.485764 GCCTTCTCTTTAGGGCCTG 57.514 57.895 18.53 0.00 38.77 4.85
435 436 1.213926 AGCATGGCCTTCTCTTTAGGG 59.786 52.381 3.32 0.00 33.19 3.53
436 437 2.725221 AGCATGGCCTTCTCTTTAGG 57.275 50.000 3.32 0.00 35.80 2.69
437 438 3.129988 CCAAAGCATGGCCTTCTCTTTAG 59.870 47.826 3.32 0.00 43.80 1.85
604 605 6.145534 TGAGAAATATTATTGTCATCGTCGCC 59.854 38.462 0.00 0.00 28.69 5.54
722 800 4.260253 GGGAGCTAAACTTTTTCGCTATCG 60.260 45.833 0.00 0.00 0.00 2.92
749 827 0.601576 AATGTGTAAGGACGCGTGCA 60.602 50.000 32.28 10.41 39.04 4.57
768 846 8.437742 GCAGCAAGTCTAAAAATAACGTTACTA 58.562 33.333 10.81 0.00 0.00 1.82
769 847 7.172703 AGCAGCAAGTCTAAAAATAACGTTACT 59.827 33.333 10.81 0.00 0.00 2.24
770 848 7.295930 AGCAGCAAGTCTAAAAATAACGTTAC 58.704 34.615 10.81 0.00 0.00 2.50
816 1405 5.216614 AGGAAAGTGACAAAGTACTCCTC 57.783 43.478 0.00 0.00 0.00 3.71
850 1446 1.155889 CACATTTCGCAGTACAGCCA 58.844 50.000 4.50 0.00 0.00 4.75
920 1516 0.040157 TACGTGTCGTCGGTTTCAGG 60.040 55.000 0.00 0.00 41.54 3.86
1082 1685 0.324923 AGGACCGTGGTAGCCATACA 60.325 55.000 0.00 0.00 35.28 2.29
1177 1780 1.757306 CACCAACCACAGGAGCTCT 59.243 57.895 14.64 0.00 0.00 4.09
1210 1813 2.121506 AAGGGTGGAAGGAGGCCA 60.122 61.111 5.01 0.00 0.00 5.36
1271 1874 4.103943 TCCAGCATAGCACCATAACCATAA 59.896 41.667 0.00 0.00 0.00 1.90
1360 1969 3.566273 CTGATAGCAGACAGGAGCG 57.434 57.895 0.40 0.00 45.17 5.03
1401 2013 1.202110 GCCACAAGAATCACATGCTCG 60.202 52.381 0.00 0.00 0.00 5.03
1435 2047 1.065701 CTCTGTATTCCGTCACCCTCG 59.934 57.143 0.00 0.00 0.00 4.63
1440 2052 1.798079 GCCGACTCTGTATTCCGTCAC 60.798 57.143 0.00 0.00 0.00 3.67
1459 2071 3.455469 GGCAGGATGGTGCTTGGC 61.455 66.667 0.00 0.00 43.45 4.52
1471 2083 2.369860 TCTGTAGGCAATATGAGGCAGG 59.630 50.000 5.05 0.00 0.00 4.85
1477 2089 5.494390 AGCATCATCTGTAGGCAATATGA 57.506 39.130 0.00 0.00 34.01 2.15
1503 2115 6.790285 AACCAAATGCAGAGCAAATAAAAG 57.210 33.333 0.00 0.00 43.62 2.27
1513 2125 7.592938 TGACAGTAATTAAACCAAATGCAGAG 58.407 34.615 0.00 0.00 0.00 3.35
1521 2133 6.711194 TCGGACAATGACAGTAATTAAACCAA 59.289 34.615 0.00 0.00 0.00 3.67
1539 2151 4.097437 GTCCATGTCTACTACATCGGACAA 59.903 45.833 21.62 1.64 46.15 3.18
1544 2156 4.632538 TGTGTCCATGTCTACTACATCG 57.367 45.455 0.00 0.00 46.15 3.84
1628 2240 4.946784 ATCCAACATTGCGTTCTAAGAC 57.053 40.909 0.00 0.00 34.86 3.01
1776 2403 3.213249 AGTTGTACATTCCGACGAGTC 57.787 47.619 0.00 0.00 0.00 3.36
1863 2490 3.723681 TGGGAATGATAAGCCAGGAATCT 59.276 43.478 0.00 0.00 0.00 2.40
1900 2529 1.541147 GAAGCAAACTACTGGCATGCA 59.459 47.619 21.36 4.79 39.42 3.96
1901 2530 1.541147 TGAAGCAAACTACTGGCATGC 59.459 47.619 9.90 9.90 37.28 4.06
1946 2601 7.535258 GGACTAGCATATTTCACAAATAATGCG 59.465 37.037 0.00 0.00 39.74 4.73
2057 2712 4.261572 GGAAGCAATAATGTGTGTGTGTGT 60.262 41.667 0.00 0.00 0.00 3.72
2058 2713 4.022935 AGGAAGCAATAATGTGTGTGTGTG 60.023 41.667 0.00 0.00 0.00 3.82
2059 2714 4.144297 AGGAAGCAATAATGTGTGTGTGT 58.856 39.130 0.00 0.00 0.00 3.72
2060 2715 4.771590 AGGAAGCAATAATGTGTGTGTG 57.228 40.909 0.00 0.00 0.00 3.82
2061 2716 5.789643 AAAGGAAGCAATAATGTGTGTGT 57.210 34.783 0.00 0.00 0.00 3.72
2062 2717 7.814107 ACATAAAAGGAAGCAATAATGTGTGTG 59.186 33.333 0.00 0.00 0.00 3.82
2095 2750 4.098914 TGTATTTGCTGTTTCACCTCCT 57.901 40.909 0.00 0.00 0.00 3.69
2165 2820 1.801242 TCAGAGTGGTTGAGTCCCAA 58.199 50.000 0.00 0.00 32.72 4.12
2193 2848 5.205056 CAAGGTCTTCCTCTAGTACAGGAT 58.795 45.833 1.49 0.00 44.35 3.24
2211 2866 9.480053 CATCAAAATTATCAAACAGAACAAGGT 57.520 29.630 0.00 0.00 0.00 3.50
2230 2885 4.709397 ACACTTTCAGGTTGGTCATCAAAA 59.291 37.500 0.00 0.00 37.08 2.44
2266 2921 5.368145 CCAGTAGCTCCAATAACAGCAATA 58.632 41.667 0.00 0.00 38.18 1.90
2275 2930 2.108168 AGTTCGCCAGTAGCTCCAATA 58.892 47.619 0.00 0.00 40.39 1.90
2343 2998 5.441718 TGCTCATACCTGAGGAAGAAAAT 57.558 39.130 4.99 0.00 45.62 1.82
2380 3035 6.842807 AGGGATAAAAATGAAGGCAATCAGAT 59.157 34.615 0.00 0.00 31.76 2.90
2385 3040 9.671279 CTAAAAAGGGATAAAAATGAAGGCAAT 57.329 29.630 0.00 0.00 0.00 3.56
2402 3057 5.261216 TGCTAAGGATGGTTCTAAAAAGGG 58.739 41.667 0.00 0.00 0.00 3.95
2404 3059 7.657336 TGTTTGCTAAGGATGGTTCTAAAAAG 58.343 34.615 0.00 0.00 0.00 2.27
2419 3074 4.853743 GGAAATCGAAGCTTGTTTGCTAAG 59.146 41.667 2.10 0.00 43.24 2.18
2433 3088 5.764686 CACAGATATGGGATTGGAAATCGAA 59.235 40.000 0.00 0.00 0.00 3.71
2439 3094 5.910355 TGATCACAGATATGGGATTGGAA 57.090 39.130 6.52 0.00 31.06 3.53
2441 3096 4.763793 GGTTGATCACAGATATGGGATTGG 59.236 45.833 6.52 0.00 31.06 3.16
2448 3103 2.804527 CAGCGGGTTGATCACAGATATG 59.195 50.000 0.00 0.00 0.00 1.78
2453 3108 1.399440 CATTCAGCGGGTTGATCACAG 59.601 52.381 0.00 0.00 0.00 3.66
2498 5642 8.728596 AGCCTAACTATGTATAGGAAAGATGT 57.271 34.615 3.09 0.00 41.03 3.06
2530 5674 4.523943 ACACGTACAACACCACCTCTATTA 59.476 41.667 0.00 0.00 0.00 0.98
2549 5693 8.284693 TGATTATTCTGCATCATTATTCACACG 58.715 33.333 0.00 0.00 0.00 4.49
2587 5731 5.011738 TCACTAGATTCGAACTCCCAAAAGT 59.988 40.000 0.00 0.00 0.00 2.66
2600 5744 2.803451 GACAGGCAGTCACTAGATTCG 58.197 52.381 5.03 0.00 46.77 3.34
2622 5766 8.489489 ACAGGATGAAATGATAATACAGACAGT 58.511 33.333 0.00 0.00 39.69 3.55
2652 5796 9.309516 CATTCTGCAATATAAAGCATTGAAGTT 57.690 29.630 3.31 0.00 39.28 2.66
2939 6083 2.204463 TCAGTTTGGCCATCCCATCTA 58.796 47.619 6.09 0.00 44.89 1.98
2952 6096 4.744137 TGTGCCATTTTCGAATTCAGTTTG 59.256 37.500 6.22 0.00 0.00 2.93
2958 6102 6.363577 TCTATCTGTGCCATTTTCGAATTC 57.636 37.500 0.00 0.00 0.00 2.17
2993 6137 5.296780 TCCAACAGAATTTCAGAAGTGTGAC 59.703 40.000 0.00 0.00 29.87 3.67
2997 6141 5.409520 TCGATCCAACAGAATTTCAGAAGTG 59.590 40.000 0.00 0.00 0.00 3.16
3029 6173 5.598417 ACAAATCCCAGGTTCAATTATAGCC 59.402 40.000 0.00 0.00 0.00 3.93
3048 6192 9.801873 CGAGAAATTGGGAATTAACATACAAAT 57.198 29.630 0.00 0.00 0.00 2.32
3068 6212 2.650322 AGTGCCCTTTGAAACGAGAAA 58.350 42.857 0.00 0.00 0.00 2.52
3101 6245 4.103311 GGGAACAGCAAGGTAGAATATCCT 59.897 45.833 0.00 0.00 35.34 3.24
3276 6420 0.035820 TGGTCACCGGTAGATTTGCC 60.036 55.000 6.87 5.69 0.00 4.52
3454 6598 7.699878 ACTTCCTACTCCATAAAGGTTCAAAT 58.300 34.615 0.00 0.00 39.02 2.32
3687 6831 5.826643 TGATGATGTAACCTAAAGGGCTTT 58.173 37.500 0.20 0.00 40.27 3.51
3712 6856 1.868498 CTGCAAAACAAATGGTGCCTG 59.132 47.619 0.00 0.00 36.12 4.85
3746 6892 5.245977 ACATAAAACCTGCATAGCCAAAGTT 59.754 36.000 0.00 0.00 0.00 2.66
3760 6906 9.908152 GAACTTGTGCTAATTTACATAAAACCT 57.092 29.630 0.00 0.00 0.00 3.50
3768 6914 8.100791 AGTAGGATGAACTTGTGCTAATTTACA 58.899 33.333 0.00 0.00 0.00 2.41
3877 7023 5.398603 AGAGACTACATTGAAGGTCACAG 57.601 43.478 0.00 0.00 0.00 3.66
3925 7071 6.650120 TGGGAGCACTAATAAAGGACTAAAG 58.350 40.000 0.00 0.00 0.00 1.85
3963 7109 7.716560 TGACATGGTGGATGAACTAAATGATAG 59.283 37.037 0.00 0.00 35.80 2.08
3977 7123 3.744940 ACCTGAAATGACATGGTGGAT 57.255 42.857 0.00 0.00 0.00 3.41
4083 7229 4.689062 GGATATCCTCCCCATCAAGACTA 58.311 47.826 14.97 0.00 38.19 2.59
4141 7288 4.666512 AGTGCATGGTTTTCTCTGGTATT 58.333 39.130 0.00 0.00 0.00 1.89
4151 7298 3.511146 CAGGATGGTAAGTGCATGGTTTT 59.489 43.478 0.00 0.00 0.00 2.43
4221 7368 1.740025 GAGCACCTTCACCTGCATAAC 59.260 52.381 0.00 0.00 35.73 1.89
4243 7390 6.980593 TCAATGTCCACTTTTCGAATTGATT 58.019 32.000 0.00 0.00 29.99 2.57
4301 7448 9.916397 GATTTTGTATATCTGTCAACTTTACCG 57.084 33.333 0.00 0.00 0.00 4.02
4314 7461 9.561069 GGTAGGTGTCATTGATTTTGTATATCT 57.439 33.333 0.00 0.00 0.00 1.98
4665 7817 3.395639 TCCGGTCCATATTAATTGTCGC 58.604 45.455 0.00 0.00 0.00 5.19
4767 8061 4.938028 TGATCAGGTAGGTAAGTGGTACA 58.062 43.478 0.00 0.00 34.01 2.90
4768 8062 5.681695 GCTTGATCAGGTAGGTAAGTGGTAC 60.682 48.000 6.70 0.00 0.00 3.34
4912 8206 2.607187 AGGTCACGTAAAATCAGCTCG 58.393 47.619 0.00 0.00 0.00 5.03
4919 8213 3.511146 TCTTCGGGTAGGTCACGTAAAAT 59.489 43.478 0.00 0.00 44.19 1.82
5177 8569 2.296692 ATTCGTCGCTGCGCATGAAC 62.297 55.000 18.65 8.99 0.00 3.18
5189 8581 0.933097 ATGCAGCAGCTAATTCGTCG 59.067 50.000 0.00 0.00 42.74 5.12
5349 8741 1.202855 ACATTGAGCAGCTTCCACAGT 60.203 47.619 0.00 0.00 0.00 3.55
5356 8753 3.012518 AGCGAAATACATTGAGCAGCTT 58.987 40.909 0.00 0.00 0.00 3.74
5386 8783 6.540551 TCACTTAACAGATTTTGCTACACACA 59.459 34.615 0.00 0.00 0.00 3.72
5406 8803 7.110155 TCTCCAGTTCTTGTTTTAGTTCACTT 58.890 34.615 0.00 0.00 0.00 3.16
5407 8804 6.650120 TCTCCAGTTCTTGTTTTAGTTCACT 58.350 36.000 0.00 0.00 0.00 3.41
5493 8898 1.594862 GTGCAACATATCAGCTCGGTC 59.405 52.381 0.00 0.00 36.32 4.79
5541 8946 2.282674 ACCCCACACGACTCGCTA 60.283 61.111 0.00 0.00 0.00 4.26
5597 9002 7.754924 ACTTAACATTTCCATAAGATGTTTGCG 59.245 33.333 6.30 0.00 42.28 4.85
5622 10530 0.947180 ACAACACGACCCACGCATAC 60.947 55.000 0.00 0.00 46.94 2.39
5653 10561 2.262211 GCTTTGCGGAATCAAATGACC 58.738 47.619 0.00 0.00 35.64 4.02
5859 10770 1.152652 TGGGTGGCAACGTTCCATT 60.153 52.632 18.29 0.00 42.51 3.16
5943 10854 0.608035 TGGTTCGGAAGGGTGATTGC 60.608 55.000 0.00 0.00 0.00 3.56
5954 10865 5.424757 CAACTTATGGTTAGATGGTTCGGA 58.575 41.667 0.00 0.00 36.23 4.55
5956 10867 5.734855 CCAACTTATGGTTAGATGGTTCG 57.265 43.478 0.00 0.00 44.85 3.95
6036 10947 8.715190 AGGGGCTTAAAATTACTTAGTCAAAA 57.285 30.769 0.00 0.00 0.00 2.44
6131 11042 7.667635 TGTAAACTGGACATTTCATCATGGTTA 59.332 33.333 0.00 0.00 0.00 2.85
6348 11266 2.352715 CGTTGAGAGCACACCATGACTA 60.353 50.000 0.00 0.00 0.00 2.59
6409 11329 0.940126 CTGCATATCGTGTTCCTGGC 59.060 55.000 0.00 0.00 0.00 4.85
6418 11338 2.742053 GTTTGTGTGTCCTGCATATCGT 59.258 45.455 0.00 0.00 0.00 3.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.