Multiple sequence alignment - TraesCS4A01G125500
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS4A01G125500 | chr4A | 100.000 | 4206 | 0 | 0 | 1 | 4206 | 161426959 | 161431164 | 0.000000e+00 | 7768.0 |
1 | TraesCS4A01G125500 | chr4A | 100.000 | 285 | 0 | 0 | 4534 | 4818 | 161431492 | 161431776 | 1.190000e-145 | 527.0 |
2 | TraesCS4A01G125500 | chr4B | 95.886 | 1653 | 40 | 7 | 2559 | 4206 | 392367907 | 392366278 | 0.000000e+00 | 2651.0 |
3 | TraesCS4A01G125500 | chr4B | 92.602 | 1203 | 42 | 12 | 737 | 1918 | 392369882 | 392368706 | 0.000000e+00 | 1685.0 |
4 | TraesCS4A01G125500 | chr4B | 94.419 | 645 | 30 | 4 | 1917 | 2560 | 392368661 | 392368022 | 0.000000e+00 | 987.0 |
5 | TraesCS4A01G125500 | chr4B | 90.591 | 744 | 60 | 5 | 1 | 735 | 392373771 | 392373029 | 0.000000e+00 | 977.0 |
6 | TraesCS4A01G125500 | chr4D | 97.154 | 1511 | 30 | 5 | 2559 | 4063 | 314583174 | 314581671 | 0.000000e+00 | 2540.0 |
7 | TraesCS4A01G125500 | chr4D | 95.696 | 1185 | 30 | 5 | 754 | 1918 | 314585442 | 314584259 | 0.000000e+00 | 1886.0 |
8 | TraesCS4A01G125500 | chr4D | 95.966 | 471 | 15 | 2 | 2090 | 2560 | 314583755 | 314583289 | 0.000000e+00 | 761.0 |
9 | TraesCS4A01G125500 | chr4D | 93.112 | 421 | 28 | 1 | 1 | 421 | 314586147 | 314585728 | 2.460000e-172 | 616.0 |
10 | TraesCS4A01G125500 | chr4D | 93.855 | 179 | 10 | 1 | 1917 | 2094 | 314584214 | 314584036 | 7.950000e-68 | 268.0 |
11 | TraesCS4A01G125500 | chr4D | 86.842 | 228 | 22 | 4 | 4589 | 4816 | 138684276 | 138684495 | 1.040000e-61 | 248.0 |
12 | TraesCS4A01G125500 | chr4D | 92.929 | 99 | 7 | 0 | 454 | 552 | 314585725 | 314585627 | 1.400000e-30 | 145.0 |
13 | TraesCS4A01G125500 | chr4D | 94.231 | 52 | 3 | 0 | 4155 | 4206 | 314581649 | 314581598 | 4.000000e-11 | 80.5 |
14 | TraesCS4A01G125500 | chr6D | 87.967 | 241 | 19 | 2 | 4576 | 4816 | 148147399 | 148147629 | 4.750000e-70 | 276.0 |
15 | TraesCS4A01G125500 | chr6D | 85.532 | 235 | 25 | 6 | 4576 | 4809 | 349906241 | 349906467 | 2.240000e-58 | 237.0 |
16 | TraesCS4A01G125500 | chr7A | 88.739 | 222 | 17 | 4 | 4576 | 4797 | 355646658 | 355646871 | 1.030000e-66 | 265.0 |
17 | TraesCS4A01G125500 | chr7A | 84.388 | 237 | 27 | 5 | 4580 | 4816 | 246009669 | 246009895 | 1.750000e-54 | 224.0 |
18 | TraesCS4A01G125500 | chr5D | 86.555 | 238 | 24 | 5 | 4579 | 4816 | 28833260 | 28833031 | 6.190000e-64 | 255.0 |
19 | TraesCS4A01G125500 | chr2B | 86.076 | 237 | 25 | 5 | 4576 | 4812 | 457117475 | 457117703 | 1.040000e-61 | 248.0 |
20 | TraesCS4A01G125500 | chr3A | 85.281 | 231 | 26 | 6 | 4579 | 4809 | 595698496 | 595698274 | 1.040000e-56 | 231.0 |
21 | TraesCS4A01G125500 | chr5B | 84.100 | 239 | 31 | 7 | 4581 | 4816 | 52662055 | 52662289 | 1.750000e-54 | 224.0 |
22 | TraesCS4A01G125500 | chr2D | 95.000 | 40 | 2 | 0 | 562 | 601 | 561046901 | 561046940 | 4.030000e-06 | 63.9 |
23 | TraesCS4A01G125500 | chr7B | 100.000 | 28 | 0 | 0 | 164 | 191 | 126119815 | 126119788 | 9.000000e-03 | 52.8 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS4A01G125500 | chr4A | 161426959 | 161431776 | 4817 | False | 4147.5 | 7768 | 100.000000 | 1 | 4818 | 2 | chr4A.!!$F1 | 4817 |
1 | TraesCS4A01G125500 | chr4B | 392366278 | 392373771 | 7493 | True | 1575.0 | 2651 | 93.374500 | 1 | 4206 | 4 | chr4B.!!$R1 | 4205 |
2 | TraesCS4A01G125500 | chr4D | 314581598 | 314586147 | 4549 | True | 899.5 | 2540 | 94.706143 | 1 | 4206 | 7 | chr4D.!!$R1 | 4205 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
663 | 706 | 0.811616 | GCCGTTCGCTGGAATCTCAT | 60.812 | 55.0 | 0.00 | 0.0 | 34.05 | 2.90 | F |
1210 | 4409 | 0.662374 | TCGGTTCGTCTCGTTTCTGC | 60.662 | 55.0 | 0.00 | 0.0 | 0.00 | 4.26 | F |
2209 | 5759 | 0.308684 | TCGCCGGTGTCGTACATATC | 59.691 | 55.0 | 16.01 | 0.0 | 33.95 | 1.63 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1546 | 4745 | 1.215382 | CTCCACTGCGTCCATTCGA | 59.785 | 57.895 | 0.00 | 0.0 | 0.00 | 3.71 | R |
2834 | 6505 | 1.003696 | GGACTTTGTCTTCCCCTCCAG | 59.996 | 57.143 | 0.00 | 0.0 | 32.47 | 3.86 | R |
3864 | 7535 | 0.103208 | CCCTCGAGTGTGGTGCTATC | 59.897 | 60.000 | 12.31 | 0.0 | 0.00 | 2.08 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
60 | 61 | 7.942990 | ACGTAAAATTTCACCACCATTTCTTA | 58.057 | 30.769 | 0.00 | 0.00 | 0.00 | 2.10 |
80 | 81 | 7.341445 | TCTTAGGCACAGTGTAAATTTTGTT | 57.659 | 32.000 | 1.61 | 0.00 | 0.00 | 2.83 |
90 | 91 | 9.730420 | ACAGTGTAAATTTTGTTACTAAAGCAG | 57.270 | 29.630 | 0.00 | 0.00 | 35.41 | 4.24 |
150 | 151 | 3.737559 | AAGATCCACCAATACAAGGCA | 57.262 | 42.857 | 0.00 | 0.00 | 0.00 | 4.75 |
218 | 219 | 3.148412 | TCATGGGTGTTGACATTGACAG | 58.852 | 45.455 | 0.00 | 0.00 | 0.00 | 3.51 |
219 | 220 | 1.979855 | TGGGTGTTGACATTGACAGG | 58.020 | 50.000 | 0.00 | 0.00 | 0.00 | 4.00 |
229 | 230 | 6.718912 | TGTTGACATTGACAGGAATTCCAATA | 59.281 | 34.615 | 26.22 | 6.93 | 38.89 | 1.90 |
245 | 246 | 2.431419 | CCAATATGGACAAGGCATGCAA | 59.569 | 45.455 | 21.36 | 0.00 | 40.96 | 4.08 |
282 | 283 | 9.662947 | CATCATATTATTTCTCTCATGCCACTA | 57.337 | 33.333 | 0.00 | 0.00 | 0.00 | 2.74 |
296 | 297 | 5.129980 | TCATGCCACTAGATGATCAACTTCT | 59.870 | 40.000 | 11.08 | 6.68 | 36.98 | 2.85 |
405 | 409 | 2.128853 | AACCAAGCCAACGACGCATG | 62.129 | 55.000 | 0.00 | 0.00 | 0.00 | 4.06 |
426 | 430 | 0.878416 | TCACACGGGCATTTACAAGC | 59.122 | 50.000 | 0.00 | 0.00 | 0.00 | 4.01 |
444 | 448 | 2.268802 | CCGCGCCTATCTCCAGCTA | 61.269 | 63.158 | 0.00 | 0.00 | 0.00 | 3.32 |
464 | 468 | 6.599638 | CAGCTAGTTTAGGATAACCTTTTGCT | 59.400 | 38.462 | 0.00 | 0.00 | 45.36 | 3.91 |
528 | 532 | 4.342665 | ACCCTTTTTGAAAGGACGCAAATA | 59.657 | 37.500 | 18.54 | 0.00 | 39.81 | 1.40 |
542 | 546 | 1.268032 | GCAAATACCTGGCGAACGATG | 60.268 | 52.381 | 0.00 | 0.00 | 0.00 | 3.84 |
559 | 563 | 2.594592 | GGCCAACAGGACGCTTGT | 60.595 | 61.111 | 0.00 | 0.00 | 0.00 | 3.16 |
560 | 564 | 1.302192 | GGCCAACAGGACGCTTGTA | 60.302 | 57.895 | 0.00 | 0.00 | 0.00 | 2.41 |
588 | 626 | 5.236047 | GCATTTTACAAAACTGCCATGACAA | 59.764 | 36.000 | 0.00 | 0.00 | 31.91 | 3.18 |
645 | 688 | 1.517242 | CAGATCGGATAGCTTTGGGC | 58.483 | 55.000 | 0.00 | 0.00 | 42.19 | 5.36 |
663 | 706 | 0.811616 | GCCGTTCGCTGGAATCTCAT | 60.812 | 55.000 | 0.00 | 0.00 | 34.05 | 2.90 |
704 | 747 | 3.546670 | CAGATAGCTACACCGTTTCGTTC | 59.453 | 47.826 | 0.00 | 0.00 | 0.00 | 3.95 |
705 | 748 | 3.442977 | AGATAGCTACACCGTTTCGTTCT | 59.557 | 43.478 | 0.00 | 0.00 | 0.00 | 3.01 |
720 | 763 | 2.108700 | CGTTCTGAAAACAGGTTTGCG | 58.891 | 47.619 | 0.00 | 0.00 | 30.61 | 4.85 |
735 | 779 | 3.862845 | GGTTTGCGTTTGTTTTGAGACAT | 59.137 | 39.130 | 0.00 | 0.00 | 0.00 | 3.06 |
1115 | 4314 | 2.202810 | CTTCTCCCTCGAAGCCGC | 60.203 | 66.667 | 0.00 | 0.00 | 34.59 | 6.53 |
1174 | 4373 | 1.611936 | GCTCTTGGTCCCTCTGAAACC | 60.612 | 57.143 | 0.00 | 0.00 | 0.00 | 3.27 |
1210 | 4409 | 0.662374 | TCGGTTCGTCTCGTTTCTGC | 60.662 | 55.000 | 0.00 | 0.00 | 0.00 | 4.26 |
1244 | 4443 | 1.047801 | GCTTTGATTTGGGTGGGTGT | 58.952 | 50.000 | 0.00 | 0.00 | 0.00 | 4.16 |
1324 | 4523 | 3.015145 | ATGGTTCGGGTCCTGGGG | 61.015 | 66.667 | 0.00 | 0.00 | 0.00 | 4.96 |
1439 | 4638 | 2.035009 | CGTCCGTTGTGCAATTGTTTTG | 60.035 | 45.455 | 7.40 | 0.00 | 0.00 | 2.44 |
1483 | 4682 | 2.113860 | TTGTGAGGCTAGACATTGGC | 57.886 | 50.000 | 0.00 | 0.00 | 0.00 | 4.52 |
1507 | 4706 | 2.025441 | GTGCGCGAACTTTGCCAA | 59.975 | 55.556 | 12.10 | 0.00 | 0.00 | 4.52 |
1513 | 4712 | 1.731098 | CGCGAACTTTGCCAATAACCC | 60.731 | 52.381 | 0.00 | 0.00 | 0.00 | 4.11 |
1514 | 4713 | 1.544246 | GCGAACTTTGCCAATAACCCT | 59.456 | 47.619 | 0.00 | 0.00 | 0.00 | 4.34 |
1583 | 4782 | 2.871080 | CGCGATGTTGCCTTTGCG | 60.871 | 61.111 | 0.00 | 0.00 | 40.76 | 4.85 |
1707 | 4906 | 5.184287 | AGTTCACCCCAAAATTACCAATACG | 59.816 | 40.000 | 0.00 | 0.00 | 0.00 | 3.06 |
1758 | 4961 | 6.754193 | TGGGGAACTTGTCAAATTTAATGAC | 58.246 | 36.000 | 2.39 | 2.39 | 45.82 | 3.06 |
1796 | 4999 | 6.361748 | GAACTGAAGTTTGCTATTTGAGCTTG | 59.638 | 38.462 | 0.00 | 0.00 | 44.50 | 4.01 |
1935 | 5199 | 5.599999 | ACAATACTCTAGCCACTTACAGG | 57.400 | 43.478 | 0.00 | 0.00 | 0.00 | 4.00 |
1947 | 5211 | 3.005050 | CCACTTACAGGCAATGGCATATG | 59.995 | 47.826 | 10.05 | 0.00 | 43.71 | 1.78 |
1948 | 5212 | 3.005050 | CACTTACAGGCAATGGCATATGG | 59.995 | 47.826 | 10.05 | 0.00 | 43.71 | 2.74 |
1950 | 5214 | 1.991121 | ACAGGCAATGGCATATGGAG | 58.009 | 50.000 | 10.05 | 0.00 | 43.71 | 3.86 |
2015 | 5280 | 4.281688 | ACAATTCAGTTAAAGCATGTGCCT | 59.718 | 37.500 | 0.57 | 0.00 | 43.38 | 4.75 |
2209 | 5759 | 0.308684 | TCGCCGGTGTCGTACATATC | 59.691 | 55.000 | 16.01 | 0.00 | 33.95 | 1.63 |
2218 | 5768 | 5.190992 | GTGTCGTACATATCCATACACCA | 57.809 | 43.478 | 0.00 | 0.00 | 31.77 | 4.17 |
2238 | 5788 | 8.588290 | ACACCATGCCTGTAAAAATAATAAGA | 57.412 | 30.769 | 0.00 | 0.00 | 0.00 | 2.10 |
2407 | 5957 | 2.550830 | ACAGGTCTGCAACTTCGAAT | 57.449 | 45.000 | 0.00 | 0.00 | 0.00 | 3.34 |
2492 | 6043 | 6.014755 | GGGAAAGTACTTGTGTTACTCTACCT | 60.015 | 42.308 | 9.34 | 0.00 | 0.00 | 3.08 |
2540 | 6091 | 6.313519 | AGGAACTAGGACATAGCATTTTGA | 57.686 | 37.500 | 0.00 | 0.00 | 36.02 | 2.69 |
2544 | 6095 | 6.382869 | ACTAGGACATAGCATTTTGAATGC | 57.617 | 37.500 | 15.78 | 15.78 | 44.85 | 3.56 |
2629 | 6300 | 1.479389 | CCTCAAACCTCCCCCATATGC | 60.479 | 57.143 | 0.00 | 0.00 | 0.00 | 3.14 |
2632 | 6303 | 0.928726 | AAACCTCCCCCATATGCCCA | 60.929 | 55.000 | 0.00 | 0.00 | 0.00 | 5.36 |
2803 | 6474 | 3.426159 | CCAGACGCATATGTCCAAACAAC | 60.426 | 47.826 | 4.29 | 0.00 | 39.30 | 3.32 |
2819 | 6490 | 5.244755 | CAAACAACTTGGGGATAAATTGGG | 58.755 | 41.667 | 0.00 | 0.00 | 0.00 | 4.12 |
2820 | 6491 | 3.449918 | ACAACTTGGGGATAAATTGGGG | 58.550 | 45.455 | 0.00 | 0.00 | 0.00 | 4.96 |
2821 | 6492 | 3.181400 | ACAACTTGGGGATAAATTGGGGT | 60.181 | 43.478 | 0.00 | 0.00 | 0.00 | 4.95 |
2822 | 6493 | 3.843619 | CAACTTGGGGATAAATTGGGGTT | 59.156 | 43.478 | 0.00 | 0.00 | 0.00 | 4.11 |
3142 | 6813 | 1.919918 | TGTTTTGCCTTGCTTTGTCG | 58.080 | 45.000 | 0.00 | 0.00 | 0.00 | 4.35 |
3406 | 7077 | 7.440556 | CCTCACTCATACTTTACAAGATCATGG | 59.559 | 40.741 | 2.59 | 0.00 | 0.00 | 3.66 |
3429 | 7100 | 8.121305 | TGGAATTCATGCAAACTATTAACACT | 57.879 | 30.769 | 7.93 | 0.00 | 0.00 | 3.55 |
3536 | 7207 | 3.804325 | CCAGTTATCGCTCATGGTAAGTG | 59.196 | 47.826 | 0.00 | 0.00 | 0.00 | 3.16 |
3673 | 7344 | 3.863086 | AGACAGGAGGAAGAGAAAGGAA | 58.137 | 45.455 | 0.00 | 0.00 | 0.00 | 3.36 |
3864 | 7535 | 6.276091 | TCTTGAGATGATGAATAACAGTCCG | 58.724 | 40.000 | 0.00 | 0.00 | 0.00 | 4.79 |
3959 | 7630 | 4.771356 | GCACGCCTGCTGCATGTG | 62.771 | 66.667 | 19.28 | 19.28 | 40.63 | 3.21 |
3966 | 7637 | 1.686566 | CCTGCTGCATGTGTACGACG | 61.687 | 60.000 | 1.31 | 0.00 | 0.00 | 5.12 |
3993 | 7664 | 5.144159 | ACTCTGAATCTATGGTACTGGGA | 57.856 | 43.478 | 0.00 | 0.00 | 0.00 | 4.37 |
3997 | 7668 | 4.878968 | TGAATCTATGGTACTGGGAGTCA | 58.121 | 43.478 | 0.00 | 0.00 | 0.00 | 3.41 |
4112 | 7785 | 4.081087 | TCTCGGTGAAATAGGAAAGGAAGG | 60.081 | 45.833 | 0.00 | 0.00 | 0.00 | 3.46 |
4124 | 7797 | 3.511540 | GGAAAGGAAGGACCATTGGAAAG | 59.488 | 47.826 | 10.37 | 0.00 | 42.04 | 2.62 |
4188 | 7864 | 2.747460 | GGCAGCATCTCCAACGCA | 60.747 | 61.111 | 0.00 | 0.00 | 0.00 | 5.24 |
4189 | 7865 | 2.117156 | GGCAGCATCTCCAACGCAT | 61.117 | 57.895 | 0.00 | 0.00 | 0.00 | 4.73 |
4550 | 8226 | 2.761213 | CCCATGCTCCCCCTTTGC | 60.761 | 66.667 | 0.00 | 0.00 | 0.00 | 3.68 |
4551 | 8227 | 2.361771 | CCATGCTCCCCCTTTGCT | 59.638 | 61.111 | 0.00 | 0.00 | 0.00 | 3.91 |
4552 | 8228 | 1.305549 | CCATGCTCCCCCTTTGCTT | 60.306 | 57.895 | 0.00 | 0.00 | 0.00 | 3.91 |
4553 | 8229 | 0.906282 | CCATGCTCCCCCTTTGCTTT | 60.906 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
4554 | 8230 | 0.533951 | CATGCTCCCCCTTTGCTTTC | 59.466 | 55.000 | 0.00 | 0.00 | 0.00 | 2.62 |
4555 | 8231 | 0.114954 | ATGCTCCCCCTTTGCTTTCA | 59.885 | 50.000 | 0.00 | 0.00 | 0.00 | 2.69 |
4556 | 8232 | 0.114954 | TGCTCCCCCTTTGCTTTCAT | 59.885 | 50.000 | 0.00 | 0.00 | 0.00 | 2.57 |
4557 | 8233 | 0.820226 | GCTCCCCCTTTGCTTTCATC | 59.180 | 55.000 | 0.00 | 0.00 | 0.00 | 2.92 |
4558 | 8234 | 1.618074 | GCTCCCCCTTTGCTTTCATCT | 60.618 | 52.381 | 0.00 | 0.00 | 0.00 | 2.90 |
4559 | 8235 | 2.097825 | CTCCCCCTTTGCTTTCATCTG | 58.902 | 52.381 | 0.00 | 0.00 | 0.00 | 2.90 |
4560 | 8236 | 0.533951 | CCCCCTTTGCTTTCATCTGC | 59.466 | 55.000 | 0.00 | 0.00 | 0.00 | 4.26 |
4561 | 8237 | 1.259609 | CCCCTTTGCTTTCATCTGCA | 58.740 | 50.000 | 0.00 | 0.00 | 37.42 | 4.41 |
4562 | 8238 | 1.067354 | CCCCTTTGCTTTCATCTGCAC | 60.067 | 52.381 | 0.00 | 0.00 | 39.05 | 4.57 |
4563 | 8239 | 1.067354 | CCCTTTGCTTTCATCTGCACC | 60.067 | 52.381 | 0.00 | 0.00 | 39.05 | 5.01 |
4564 | 8240 | 1.067354 | CCTTTGCTTTCATCTGCACCC | 60.067 | 52.381 | 0.00 | 0.00 | 39.05 | 4.61 |
4565 | 8241 | 1.891150 | CTTTGCTTTCATCTGCACCCT | 59.109 | 47.619 | 0.00 | 0.00 | 39.05 | 4.34 |
4566 | 8242 | 1.999648 | TTGCTTTCATCTGCACCCTT | 58.000 | 45.000 | 0.00 | 0.00 | 39.05 | 3.95 |
4567 | 8243 | 1.538047 | TGCTTTCATCTGCACCCTTC | 58.462 | 50.000 | 0.00 | 0.00 | 33.94 | 3.46 |
4568 | 8244 | 0.449388 | GCTTTCATCTGCACCCTTCG | 59.551 | 55.000 | 0.00 | 0.00 | 0.00 | 3.79 |
4569 | 8245 | 1.813513 | CTTTCATCTGCACCCTTCGT | 58.186 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
4570 | 8246 | 1.466167 | CTTTCATCTGCACCCTTCGTG | 59.534 | 52.381 | 0.00 | 0.00 | 46.03 | 4.35 |
4571 | 8247 | 0.396435 | TTCATCTGCACCCTTCGTGT | 59.604 | 50.000 | 0.00 | 0.00 | 44.97 | 4.49 |
4572 | 8248 | 0.037326 | TCATCTGCACCCTTCGTGTC | 60.037 | 55.000 | 0.00 | 0.00 | 44.97 | 3.67 |
4573 | 8249 | 1.021390 | CATCTGCACCCTTCGTGTCC | 61.021 | 60.000 | 0.00 | 0.00 | 44.97 | 4.02 |
4574 | 8250 | 2.507110 | ATCTGCACCCTTCGTGTCCG | 62.507 | 60.000 | 0.00 | 0.00 | 44.97 | 4.79 |
4575 | 8251 | 3.515316 | CTGCACCCTTCGTGTCCGT | 62.515 | 63.158 | 0.00 | 0.00 | 44.97 | 4.69 |
4576 | 8252 | 3.041940 | GCACCCTTCGTGTCCGTG | 61.042 | 66.667 | 0.00 | 0.00 | 44.97 | 4.94 |
4577 | 8253 | 2.732016 | CACCCTTCGTGTCCGTGA | 59.268 | 61.111 | 0.00 | 0.00 | 37.73 | 4.35 |
4578 | 8254 | 1.663702 | CACCCTTCGTGTCCGTGAC | 60.664 | 63.158 | 0.00 | 0.00 | 37.73 | 3.67 |
4579 | 8255 | 2.129146 | ACCCTTCGTGTCCGTGACA | 61.129 | 57.895 | 3.02 | 3.02 | 40.50 | 3.58 |
4580 | 8256 | 1.068417 | CCCTTCGTGTCCGTGACAA | 59.932 | 57.895 | 8.09 | 0.00 | 44.49 | 3.18 |
4581 | 8257 | 0.320421 | CCCTTCGTGTCCGTGACAAT | 60.320 | 55.000 | 8.09 | 0.00 | 44.49 | 2.71 |
4582 | 8258 | 0.790207 | CCTTCGTGTCCGTGACAATG | 59.210 | 55.000 | 8.09 | 5.19 | 44.49 | 2.82 |
4583 | 8259 | 1.604438 | CCTTCGTGTCCGTGACAATGA | 60.604 | 52.381 | 8.09 | 7.07 | 44.49 | 2.57 |
4584 | 8260 | 2.337583 | CTTCGTGTCCGTGACAATGAT | 58.662 | 47.619 | 8.09 | 0.00 | 44.49 | 2.45 |
4585 | 8261 | 1.990799 | TCGTGTCCGTGACAATGATC | 58.009 | 50.000 | 8.09 | 0.00 | 44.49 | 2.92 |
4586 | 8262 | 1.271102 | TCGTGTCCGTGACAATGATCA | 59.729 | 47.619 | 0.00 | 0.00 | 44.49 | 2.92 |
4587 | 8263 | 1.390123 | CGTGTCCGTGACAATGATCAC | 59.610 | 52.381 | 0.00 | 6.08 | 44.49 | 3.06 |
4599 | 8275 | 8.728337 | GTGACAATGATCACATATATAGGCAT | 57.272 | 34.615 | 0.00 | 0.00 | 46.89 | 4.40 |
4600 | 8276 | 8.824781 | GTGACAATGATCACATATATAGGCATC | 58.175 | 37.037 | 0.00 | 0.00 | 46.89 | 3.91 |
4601 | 8277 | 8.542080 | TGACAATGATCACATATATAGGCATCA | 58.458 | 33.333 | 0.00 | 10.44 | 35.50 | 3.07 |
4602 | 8278 | 8.728337 | ACAATGATCACATATATAGGCATCAC | 57.272 | 34.615 | 0.00 | 0.00 | 35.50 | 3.06 |
4603 | 8279 | 7.493645 | ACAATGATCACATATATAGGCATCACG | 59.506 | 37.037 | 0.00 | 8.26 | 35.50 | 4.35 |
4604 | 8280 | 6.530019 | TGATCACATATATAGGCATCACGT | 57.470 | 37.500 | 0.00 | 0.00 | 0.00 | 4.49 |
4605 | 8281 | 6.564328 | TGATCACATATATAGGCATCACGTC | 58.436 | 40.000 | 0.00 | 0.00 | 0.00 | 4.34 |
4606 | 8282 | 5.324784 | TCACATATATAGGCATCACGTCC | 57.675 | 43.478 | 0.00 | 0.00 | 0.00 | 4.79 |
4607 | 8283 | 4.105486 | CACATATATAGGCATCACGTCCG | 58.895 | 47.826 | 0.00 | 0.00 | 0.00 | 4.79 |
4608 | 8284 | 3.762288 | ACATATATAGGCATCACGTCCGT | 59.238 | 43.478 | 0.00 | 0.00 | 0.00 | 4.69 |
4609 | 8285 | 2.724977 | ATATAGGCATCACGTCCGTG | 57.275 | 50.000 | 13.37 | 13.37 | 46.64 | 4.94 |
4620 | 8296 | 0.595095 | ACGTCCGTGACAAGTAGACC | 59.405 | 55.000 | 0.00 | 0.00 | 32.09 | 3.85 |
4621 | 8297 | 0.453950 | CGTCCGTGACAAGTAGACCG | 60.454 | 60.000 | 5.15 | 0.00 | 32.09 | 4.79 |
4622 | 8298 | 0.877071 | GTCCGTGACAAGTAGACCGA | 59.123 | 55.000 | 0.00 | 0.00 | 32.09 | 4.69 |
4623 | 8299 | 0.877071 | TCCGTGACAAGTAGACCGAC | 59.123 | 55.000 | 0.00 | 0.00 | 0.00 | 4.79 |
4624 | 8300 | 0.879765 | CCGTGACAAGTAGACCGACT | 59.120 | 55.000 | 0.00 | 0.00 | 0.00 | 4.18 |
4625 | 8301 | 1.135746 | CCGTGACAAGTAGACCGACTC | 60.136 | 57.143 | 0.00 | 0.00 | 0.00 | 3.36 |
4626 | 8302 | 1.135746 | CGTGACAAGTAGACCGACTCC | 60.136 | 57.143 | 0.00 | 0.00 | 0.00 | 3.85 |
4627 | 8303 | 2.161030 | GTGACAAGTAGACCGACTCCT | 58.839 | 52.381 | 0.00 | 0.00 | 0.00 | 3.69 |
4628 | 8304 | 2.095161 | GTGACAAGTAGACCGACTCCTG | 60.095 | 54.545 | 0.00 | 0.00 | 0.00 | 3.86 |
4629 | 8305 | 2.161030 | GACAAGTAGACCGACTCCTGT | 58.839 | 52.381 | 0.00 | 0.00 | 0.00 | 4.00 |
4630 | 8306 | 2.161030 | ACAAGTAGACCGACTCCTGTC | 58.839 | 52.381 | 0.00 | 0.00 | 39.70 | 3.51 |
4631 | 8307 | 2.224818 | ACAAGTAGACCGACTCCTGTCT | 60.225 | 50.000 | 0.00 | 0.00 | 43.85 | 3.41 |
4632 | 8308 | 2.116827 | AGTAGACCGACTCCTGTCTG | 57.883 | 55.000 | 2.58 | 0.00 | 41.71 | 3.51 |
4633 | 8309 | 0.452585 | GTAGACCGACTCCTGTCTGC | 59.547 | 60.000 | 2.58 | 0.00 | 41.71 | 4.26 |
4634 | 8310 | 0.037734 | TAGACCGACTCCTGTCTGCA | 59.962 | 55.000 | 2.58 | 0.00 | 41.71 | 4.41 |
4635 | 8311 | 0.613292 | AGACCGACTCCTGTCTGCAT | 60.613 | 55.000 | 0.00 | 0.00 | 40.23 | 3.96 |
4636 | 8312 | 0.179124 | GACCGACTCCTGTCTGCATC | 60.179 | 60.000 | 0.00 | 0.00 | 40.86 | 3.91 |
4637 | 8313 | 0.613292 | ACCGACTCCTGTCTGCATCT | 60.613 | 55.000 | 0.00 | 0.00 | 40.86 | 2.90 |
4638 | 8314 | 1.341089 | ACCGACTCCTGTCTGCATCTA | 60.341 | 52.381 | 0.00 | 0.00 | 40.86 | 1.98 |
4639 | 8315 | 1.066303 | CCGACTCCTGTCTGCATCTAC | 59.934 | 57.143 | 0.00 | 0.00 | 40.86 | 2.59 |
4640 | 8316 | 1.066303 | CGACTCCTGTCTGCATCTACC | 59.934 | 57.143 | 0.00 | 0.00 | 40.86 | 3.18 |
4641 | 8317 | 2.103373 | GACTCCTGTCTGCATCTACCA | 58.897 | 52.381 | 0.00 | 0.00 | 39.94 | 3.25 |
4642 | 8318 | 1.827969 | ACTCCTGTCTGCATCTACCAC | 59.172 | 52.381 | 0.00 | 0.00 | 0.00 | 4.16 |
4643 | 8319 | 2.106566 | CTCCTGTCTGCATCTACCACT | 58.893 | 52.381 | 0.00 | 0.00 | 0.00 | 4.00 |
4644 | 8320 | 3.291584 | CTCCTGTCTGCATCTACCACTA | 58.708 | 50.000 | 0.00 | 0.00 | 0.00 | 2.74 |
4645 | 8321 | 3.894427 | CTCCTGTCTGCATCTACCACTAT | 59.106 | 47.826 | 0.00 | 0.00 | 0.00 | 2.12 |
4646 | 8322 | 4.290093 | TCCTGTCTGCATCTACCACTATT | 58.710 | 43.478 | 0.00 | 0.00 | 0.00 | 1.73 |
4647 | 8323 | 5.454966 | TCCTGTCTGCATCTACCACTATTA | 58.545 | 41.667 | 0.00 | 0.00 | 0.00 | 0.98 |
4648 | 8324 | 5.302059 | TCCTGTCTGCATCTACCACTATTAC | 59.698 | 44.000 | 0.00 | 0.00 | 0.00 | 1.89 |
4649 | 8325 | 5.303078 | CCTGTCTGCATCTACCACTATTACT | 59.697 | 44.000 | 0.00 | 0.00 | 0.00 | 2.24 |
4650 | 8326 | 6.392625 | TGTCTGCATCTACCACTATTACTC | 57.607 | 41.667 | 0.00 | 0.00 | 0.00 | 2.59 |
4651 | 8327 | 5.008712 | TGTCTGCATCTACCACTATTACTCG | 59.991 | 44.000 | 0.00 | 0.00 | 0.00 | 4.18 |
4652 | 8328 | 5.238868 | GTCTGCATCTACCACTATTACTCGA | 59.761 | 44.000 | 0.00 | 0.00 | 0.00 | 4.04 |
4653 | 8329 | 5.238868 | TCTGCATCTACCACTATTACTCGAC | 59.761 | 44.000 | 0.00 | 0.00 | 0.00 | 4.20 |
4654 | 8330 | 4.277672 | TGCATCTACCACTATTACTCGACC | 59.722 | 45.833 | 0.00 | 0.00 | 0.00 | 4.79 |
4655 | 8331 | 4.277672 | GCATCTACCACTATTACTCGACCA | 59.722 | 45.833 | 0.00 | 0.00 | 0.00 | 4.02 |
4656 | 8332 | 5.221185 | GCATCTACCACTATTACTCGACCAA | 60.221 | 44.000 | 0.00 | 0.00 | 0.00 | 3.67 |
4657 | 8333 | 6.516860 | GCATCTACCACTATTACTCGACCAAT | 60.517 | 42.308 | 0.00 | 0.00 | 0.00 | 3.16 |
4658 | 8334 | 6.630444 | TCTACCACTATTACTCGACCAATC | 57.370 | 41.667 | 0.00 | 0.00 | 0.00 | 2.67 |
4659 | 8335 | 6.363065 | TCTACCACTATTACTCGACCAATCT | 58.637 | 40.000 | 0.00 | 0.00 | 0.00 | 2.40 |
4660 | 8336 | 7.512130 | TCTACCACTATTACTCGACCAATCTA | 58.488 | 38.462 | 0.00 | 0.00 | 0.00 | 1.98 |
4661 | 8337 | 6.388435 | ACCACTATTACTCGACCAATCTAC | 57.612 | 41.667 | 0.00 | 0.00 | 0.00 | 2.59 |
4662 | 8338 | 5.301298 | ACCACTATTACTCGACCAATCTACC | 59.699 | 44.000 | 0.00 | 0.00 | 0.00 | 3.18 |
4663 | 8339 | 5.450171 | CACTATTACTCGACCAATCTACCG | 58.550 | 45.833 | 0.00 | 0.00 | 0.00 | 4.02 |
4664 | 8340 | 2.857592 | TTACTCGACCAATCTACCGC | 57.142 | 50.000 | 0.00 | 0.00 | 0.00 | 5.68 |
4665 | 8341 | 2.048444 | TACTCGACCAATCTACCGCT | 57.952 | 50.000 | 0.00 | 0.00 | 0.00 | 5.52 |
4666 | 8342 | 2.048444 | ACTCGACCAATCTACCGCTA | 57.952 | 50.000 | 0.00 | 0.00 | 0.00 | 4.26 |
4667 | 8343 | 2.584236 | ACTCGACCAATCTACCGCTAT | 58.416 | 47.619 | 0.00 | 0.00 | 0.00 | 2.97 |
4668 | 8344 | 2.553172 | ACTCGACCAATCTACCGCTATC | 59.447 | 50.000 | 0.00 | 0.00 | 0.00 | 2.08 |
4669 | 8345 | 1.884579 | TCGACCAATCTACCGCTATCC | 59.115 | 52.381 | 0.00 | 0.00 | 0.00 | 2.59 |
4670 | 8346 | 1.611977 | CGACCAATCTACCGCTATCCA | 59.388 | 52.381 | 0.00 | 0.00 | 0.00 | 3.41 |
4671 | 8347 | 2.035449 | CGACCAATCTACCGCTATCCAA | 59.965 | 50.000 | 0.00 | 0.00 | 0.00 | 3.53 |
4672 | 8348 | 3.391049 | GACCAATCTACCGCTATCCAAC | 58.609 | 50.000 | 0.00 | 0.00 | 0.00 | 3.77 |
4673 | 8349 | 2.769663 | ACCAATCTACCGCTATCCAACA | 59.230 | 45.455 | 0.00 | 0.00 | 0.00 | 3.33 |
4674 | 8350 | 3.391296 | ACCAATCTACCGCTATCCAACAT | 59.609 | 43.478 | 0.00 | 0.00 | 0.00 | 2.71 |
4675 | 8351 | 3.748048 | CCAATCTACCGCTATCCAACATG | 59.252 | 47.826 | 0.00 | 0.00 | 0.00 | 3.21 |
4676 | 8352 | 2.526304 | TCTACCGCTATCCAACATGC | 57.474 | 50.000 | 0.00 | 0.00 | 0.00 | 4.06 |
4677 | 8353 | 1.760029 | TCTACCGCTATCCAACATGCA | 59.240 | 47.619 | 0.00 | 0.00 | 0.00 | 3.96 |
4678 | 8354 | 2.368548 | TCTACCGCTATCCAACATGCAT | 59.631 | 45.455 | 0.00 | 0.00 | 0.00 | 3.96 |
4679 | 8355 | 1.597742 | ACCGCTATCCAACATGCATC | 58.402 | 50.000 | 0.00 | 0.00 | 0.00 | 3.91 |
4680 | 8356 | 1.141657 | ACCGCTATCCAACATGCATCT | 59.858 | 47.619 | 0.00 | 0.00 | 0.00 | 2.90 |
4681 | 8357 | 2.368548 | ACCGCTATCCAACATGCATCTA | 59.631 | 45.455 | 0.00 | 0.00 | 0.00 | 1.98 |
4682 | 8358 | 3.008375 | ACCGCTATCCAACATGCATCTAT | 59.992 | 43.478 | 0.00 | 0.00 | 0.00 | 1.98 |
4683 | 8359 | 3.373130 | CCGCTATCCAACATGCATCTATG | 59.627 | 47.826 | 0.00 | 0.00 | 0.00 | 2.23 |
4684 | 8360 | 4.248058 | CGCTATCCAACATGCATCTATGA | 58.752 | 43.478 | 0.00 | 0.00 | 0.00 | 2.15 |
4685 | 8361 | 4.874396 | CGCTATCCAACATGCATCTATGAT | 59.126 | 41.667 | 0.00 | 0.00 | 0.00 | 2.45 |
4686 | 8362 | 6.044682 | CGCTATCCAACATGCATCTATGATA | 58.955 | 40.000 | 0.00 | 1.06 | 0.00 | 2.15 |
4687 | 8363 | 6.019237 | CGCTATCCAACATGCATCTATGATAC | 60.019 | 42.308 | 0.00 | 0.00 | 0.00 | 2.24 |
4688 | 8364 | 7.046652 | GCTATCCAACATGCATCTATGATACT | 58.953 | 38.462 | 0.00 | 0.00 | 0.00 | 2.12 |
4689 | 8365 | 8.200120 | GCTATCCAACATGCATCTATGATACTA | 58.800 | 37.037 | 0.00 | 0.00 | 0.00 | 1.82 |
4692 | 8368 | 7.966812 | TCCAACATGCATCTATGATACTAAGT | 58.033 | 34.615 | 0.00 | 0.00 | 0.00 | 2.24 |
4693 | 8369 | 8.432013 | TCCAACATGCATCTATGATACTAAGTT | 58.568 | 33.333 | 0.00 | 0.00 | 0.00 | 2.66 |
4694 | 8370 | 8.715998 | CCAACATGCATCTATGATACTAAGTTC | 58.284 | 37.037 | 0.00 | 0.00 | 0.00 | 3.01 |
4695 | 8371 | 9.264719 | CAACATGCATCTATGATACTAAGTTCA | 57.735 | 33.333 | 0.00 | 0.00 | 0.00 | 3.18 |
4697 | 8373 | 9.433153 | ACATGCATCTATGATACTAAGTTCATG | 57.567 | 33.333 | 0.00 | 0.00 | 34.52 | 3.07 |
4698 | 8374 | 9.649167 | CATGCATCTATGATACTAAGTTCATGA | 57.351 | 33.333 | 0.00 | 0.00 | 34.52 | 3.07 |
4712 | 8388 | 9.355215 | ACTAAGTTCATGATAAACAGAGTAACG | 57.645 | 33.333 | 0.00 | 0.00 | 0.00 | 3.18 |
4713 | 8389 | 9.355215 | CTAAGTTCATGATAAACAGAGTAACGT | 57.645 | 33.333 | 0.00 | 0.00 | 0.00 | 3.99 |
4714 | 8390 | 8.603242 | AAGTTCATGATAAACAGAGTAACGTT | 57.397 | 30.769 | 5.88 | 5.88 | 0.00 | 3.99 |
4715 | 8391 | 8.603242 | AGTTCATGATAAACAGAGTAACGTTT | 57.397 | 30.769 | 5.91 | 0.00 | 38.76 | 3.60 |
4716 | 8392 | 9.052759 | AGTTCATGATAAACAGAGTAACGTTTT | 57.947 | 29.630 | 5.91 | 0.00 | 36.72 | 2.43 |
4720 | 8396 | 9.262472 | CATGATAAACAGAGTAACGTTTTAAGC | 57.738 | 33.333 | 5.91 | 0.00 | 36.72 | 3.09 |
4721 | 8397 | 8.367943 | TGATAAACAGAGTAACGTTTTAAGCA | 57.632 | 30.769 | 5.91 | 0.00 | 36.72 | 3.91 |
4722 | 8398 | 8.828644 | TGATAAACAGAGTAACGTTTTAAGCAA | 58.171 | 29.630 | 5.91 | 0.00 | 36.72 | 3.91 |
4723 | 8399 | 9.314501 | GATAAACAGAGTAACGTTTTAAGCAAG | 57.685 | 33.333 | 5.91 | 0.00 | 36.72 | 4.01 |
4724 | 8400 | 6.913873 | AACAGAGTAACGTTTTAAGCAAGA | 57.086 | 33.333 | 5.91 | 0.00 | 0.00 | 3.02 |
4725 | 8401 | 7.492352 | AACAGAGTAACGTTTTAAGCAAGAT | 57.508 | 32.000 | 5.91 | 0.00 | 0.00 | 2.40 |
4726 | 8402 | 6.888430 | ACAGAGTAACGTTTTAAGCAAGATG | 58.112 | 36.000 | 5.91 | 0.00 | 0.00 | 2.90 |
4727 | 8403 | 6.704493 | ACAGAGTAACGTTTTAAGCAAGATGA | 59.296 | 34.615 | 5.91 | 0.00 | 0.00 | 2.92 |
4728 | 8404 | 7.010023 | CAGAGTAACGTTTTAAGCAAGATGAC | 58.990 | 38.462 | 5.91 | 0.00 | 0.00 | 3.06 |
4729 | 8405 | 6.704493 | AGAGTAACGTTTTAAGCAAGATGACA | 59.296 | 34.615 | 5.91 | 0.00 | 0.00 | 3.58 |
4730 | 8406 | 7.387948 | AGAGTAACGTTTTAAGCAAGATGACAT | 59.612 | 33.333 | 5.91 | 0.00 | 0.00 | 3.06 |
4731 | 8407 | 7.298122 | AGTAACGTTTTAAGCAAGATGACATG | 58.702 | 34.615 | 5.91 | 0.00 | 0.00 | 3.21 |
4732 | 8408 | 5.940192 | ACGTTTTAAGCAAGATGACATGA | 57.060 | 34.783 | 0.00 | 0.00 | 0.00 | 3.07 |
4733 | 8409 | 6.500684 | ACGTTTTAAGCAAGATGACATGAT | 57.499 | 33.333 | 0.00 | 0.00 | 0.00 | 2.45 |
4734 | 8410 | 6.317088 | ACGTTTTAAGCAAGATGACATGATG | 58.683 | 36.000 | 0.00 | 0.00 | 0.00 | 3.07 |
4735 | 8411 | 6.072508 | ACGTTTTAAGCAAGATGACATGATGT | 60.073 | 34.615 | 0.00 | 0.00 | 0.00 | 3.06 |
4736 | 8412 | 7.119116 | ACGTTTTAAGCAAGATGACATGATGTA | 59.881 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
4737 | 8413 | 7.637519 | CGTTTTAAGCAAGATGACATGATGTAG | 59.362 | 37.037 | 0.00 | 0.00 | 0.00 | 2.74 |
4738 | 8414 | 8.668353 | GTTTTAAGCAAGATGACATGATGTAGA | 58.332 | 33.333 | 0.00 | 0.00 | 0.00 | 2.59 |
4739 | 8415 | 8.429493 | TTTAAGCAAGATGACATGATGTAGAG | 57.571 | 34.615 | 0.00 | 0.00 | 0.00 | 2.43 |
4740 | 8416 | 5.611128 | AGCAAGATGACATGATGTAGAGT | 57.389 | 39.130 | 0.00 | 0.00 | 0.00 | 3.24 |
4741 | 8417 | 5.987098 | AGCAAGATGACATGATGTAGAGTT | 58.013 | 37.500 | 0.00 | 0.00 | 0.00 | 3.01 |
4742 | 8418 | 5.816258 | AGCAAGATGACATGATGTAGAGTTG | 59.184 | 40.000 | 0.00 | 2.23 | 0.00 | 3.16 |
4743 | 8419 | 5.583854 | GCAAGATGACATGATGTAGAGTTGT | 59.416 | 40.000 | 0.00 | 0.00 | 0.00 | 3.32 |
4744 | 8420 | 6.758416 | GCAAGATGACATGATGTAGAGTTGTA | 59.242 | 38.462 | 0.00 | 0.00 | 0.00 | 2.41 |
4745 | 8421 | 7.042858 | GCAAGATGACATGATGTAGAGTTGTAG | 60.043 | 40.741 | 0.00 | 0.00 | 0.00 | 2.74 |
4746 | 8422 | 7.888250 | AGATGACATGATGTAGAGTTGTAGA | 57.112 | 36.000 | 0.00 | 0.00 | 0.00 | 2.59 |
4747 | 8423 | 7.711846 | AGATGACATGATGTAGAGTTGTAGAC | 58.288 | 38.462 | 0.00 | 0.00 | 0.00 | 2.59 |
4748 | 8424 | 6.834168 | TGACATGATGTAGAGTTGTAGACA | 57.166 | 37.500 | 0.00 | 0.00 | 0.00 | 3.41 |
4749 | 8425 | 7.227049 | TGACATGATGTAGAGTTGTAGACAA | 57.773 | 36.000 | 0.00 | 0.00 | 0.00 | 3.18 |
4750 | 8426 | 7.666623 | TGACATGATGTAGAGTTGTAGACAAA | 58.333 | 34.615 | 0.00 | 0.00 | 37.63 | 2.83 |
4751 | 8427 | 7.814587 | TGACATGATGTAGAGTTGTAGACAAAG | 59.185 | 37.037 | 0.00 | 0.00 | 37.63 | 2.77 |
4752 | 8428 | 7.671302 | ACATGATGTAGAGTTGTAGACAAAGT | 58.329 | 34.615 | 0.00 | 0.00 | 37.63 | 2.66 |
4753 | 8429 | 8.803235 | ACATGATGTAGAGTTGTAGACAAAGTA | 58.197 | 33.333 | 0.00 | 0.00 | 37.63 | 2.24 |
4754 | 8430 | 9.639601 | CATGATGTAGAGTTGTAGACAAAGTAA | 57.360 | 33.333 | 0.00 | 0.00 | 37.63 | 2.24 |
4756 | 8432 | 9.472361 | TGATGTAGAGTTGTAGACAAAGTAAAC | 57.528 | 33.333 | 0.00 | 0.00 | 37.63 | 2.01 |
4757 | 8433 | 9.694137 | GATGTAGAGTTGTAGACAAAGTAAACT | 57.306 | 33.333 | 0.00 | 0.00 | 37.63 | 2.66 |
4758 | 8434 | 9.694137 | ATGTAGAGTTGTAGACAAAGTAAACTC | 57.306 | 33.333 | 5.44 | 5.44 | 42.34 | 3.01 |
4759 | 8435 | 8.689061 | TGTAGAGTTGTAGACAAAGTAAACTCA | 58.311 | 33.333 | 13.91 | 0.65 | 43.71 | 3.41 |
4760 | 8436 | 9.525409 | GTAGAGTTGTAGACAAAGTAAACTCAA | 57.475 | 33.333 | 13.91 | 0.00 | 43.71 | 3.02 |
4761 | 8437 | 8.649973 | AGAGTTGTAGACAAAGTAAACTCAAG | 57.350 | 34.615 | 13.91 | 0.00 | 43.71 | 3.02 |
4762 | 8438 | 7.224949 | AGAGTTGTAGACAAAGTAAACTCAAGC | 59.775 | 37.037 | 13.91 | 0.00 | 43.71 | 4.01 |
4763 | 8439 | 6.821665 | AGTTGTAGACAAAGTAAACTCAAGCA | 59.178 | 34.615 | 0.00 | 0.00 | 37.63 | 3.91 |
4764 | 8440 | 7.335924 | AGTTGTAGACAAAGTAAACTCAAGCAA | 59.664 | 33.333 | 0.00 | 0.00 | 37.63 | 3.91 |
4765 | 8441 | 7.801716 | TGTAGACAAAGTAAACTCAAGCAAT | 57.198 | 32.000 | 0.00 | 0.00 | 0.00 | 3.56 |
4766 | 8442 | 8.896320 | TGTAGACAAAGTAAACTCAAGCAATA | 57.104 | 30.769 | 0.00 | 0.00 | 0.00 | 1.90 |
4767 | 8443 | 9.502091 | TGTAGACAAAGTAAACTCAAGCAATAT | 57.498 | 29.630 | 0.00 | 0.00 | 0.00 | 1.28 |
4768 | 8444 | 9.760660 | GTAGACAAAGTAAACTCAAGCAATATG | 57.239 | 33.333 | 0.00 | 0.00 | 0.00 | 1.78 |
4769 | 8445 | 8.621532 | AGACAAAGTAAACTCAAGCAATATGA | 57.378 | 30.769 | 0.00 | 0.00 | 0.00 | 2.15 |
4770 | 8446 | 9.236006 | AGACAAAGTAAACTCAAGCAATATGAT | 57.764 | 29.630 | 0.00 | 0.00 | 0.00 | 2.45 |
4771 | 8447 | 9.846248 | GACAAAGTAAACTCAAGCAATATGATT | 57.154 | 29.630 | 0.00 | 0.00 | 0.00 | 2.57 |
4777 | 8453 | 9.516314 | GTAAACTCAAGCAATATGATTAAACCC | 57.484 | 33.333 | 0.00 | 0.00 | 0.00 | 4.11 |
4778 | 8454 | 7.961326 | AACTCAAGCAATATGATTAAACCCT | 57.039 | 32.000 | 0.00 | 0.00 | 0.00 | 4.34 |
4779 | 8455 | 7.338800 | ACTCAAGCAATATGATTAAACCCTG | 57.661 | 36.000 | 0.00 | 0.00 | 0.00 | 4.45 |
4780 | 8456 | 6.891908 | ACTCAAGCAATATGATTAAACCCTGT | 59.108 | 34.615 | 0.00 | 0.00 | 0.00 | 4.00 |
4781 | 8457 | 7.067494 | ACTCAAGCAATATGATTAAACCCTGTC | 59.933 | 37.037 | 0.00 | 0.00 | 0.00 | 3.51 |
4782 | 8458 | 6.889177 | TCAAGCAATATGATTAAACCCTGTCA | 59.111 | 34.615 | 0.00 | 0.00 | 0.00 | 3.58 |
4783 | 8459 | 7.560991 | TCAAGCAATATGATTAAACCCTGTCAT | 59.439 | 33.333 | 0.00 | 0.00 | 35.62 | 3.06 |
4784 | 8460 | 7.902920 | AGCAATATGATTAAACCCTGTCATT | 57.097 | 32.000 | 0.00 | 0.00 | 33.65 | 2.57 |
4785 | 8461 | 8.310122 | AGCAATATGATTAAACCCTGTCATTT | 57.690 | 30.769 | 0.00 | 0.00 | 33.65 | 2.32 |
4786 | 8462 | 8.761689 | AGCAATATGATTAAACCCTGTCATTTT | 58.238 | 29.630 | 0.00 | 0.00 | 33.65 | 1.82 |
4792 | 8468 | 8.893563 | TGATTAAACCCTGTCATTTTATCCTT | 57.106 | 30.769 | 0.00 | 0.00 | 0.00 | 3.36 |
4793 | 8469 | 9.983024 | TGATTAAACCCTGTCATTTTATCCTTA | 57.017 | 29.630 | 0.00 | 0.00 | 0.00 | 2.69 |
4797 | 8473 | 8.893563 | AAACCCTGTCATTTTATCCTTAATGA | 57.106 | 30.769 | 0.00 | 0.00 | 38.17 | 2.57 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
60 | 61 | 6.709018 | AGTAACAAAATTTACACTGTGCCT | 57.291 | 33.333 | 7.90 | 0.00 | 34.83 | 4.75 |
80 | 81 | 9.899661 | AAACCATTATACATGACTGCTTTAGTA | 57.100 | 29.630 | 0.00 | 0.00 | 40.53 | 1.82 |
90 | 91 | 9.248291 | CAAAGGCATAAAACCATTATACATGAC | 57.752 | 33.333 | 0.00 | 0.00 | 0.00 | 3.06 |
229 | 230 | 2.463752 | AGAATTGCATGCCTTGTCCAT | 58.536 | 42.857 | 16.68 | 0.00 | 0.00 | 3.41 |
238 | 239 | 9.582431 | AATATGATGCTAAATAGAATTGCATGC | 57.418 | 29.630 | 11.82 | 11.82 | 43.28 | 4.06 |
265 | 266 | 5.883685 | TCATCTAGTGGCATGAGAGAAAT | 57.116 | 39.130 | 0.00 | 0.00 | 0.00 | 2.17 |
266 | 267 | 5.364735 | TGATCATCTAGTGGCATGAGAGAAA | 59.635 | 40.000 | 0.00 | 0.00 | 32.53 | 2.52 |
282 | 283 | 4.699257 | GCAAACCTCAGAAGTTGATCATCT | 59.301 | 41.667 | 0.00 | 0.00 | 34.68 | 2.90 |
296 | 297 | 7.946207 | TCAACAATATAACAAAGCAAACCTCA | 58.054 | 30.769 | 0.00 | 0.00 | 0.00 | 3.86 |
373 | 374 | 8.564574 | TCGTTGGCTTGGTTTATGATATAAATC | 58.435 | 33.333 | 0.00 | 0.00 | 0.00 | 2.17 |
405 | 409 | 0.878416 | TTGTAAATGCCCGTGTGAGC | 59.122 | 50.000 | 0.00 | 0.00 | 0.00 | 4.26 |
426 | 430 | 2.206515 | CTAGCTGGAGATAGGCGCGG | 62.207 | 65.000 | 8.83 | 0.00 | 30.88 | 6.46 |
428 | 432 | 0.676736 | AACTAGCTGGAGATAGGCGC | 59.323 | 55.000 | 3.17 | 0.00 | 38.28 | 6.53 |
444 | 448 | 6.424032 | CCCTAGCAAAAGGTTATCCTAAACT | 58.576 | 40.000 | 0.00 | 0.00 | 44.35 | 2.66 |
528 | 532 | 4.778143 | GGCCATCGTTCGCCAGGT | 62.778 | 66.667 | 0.00 | 0.00 | 45.01 | 4.00 |
542 | 546 | 1.298859 | CTACAAGCGTCCTGTTGGCC | 61.299 | 60.000 | 0.00 | 0.00 | 0.00 | 5.36 |
559 | 563 | 4.342378 | TGGCAGTTTTGTAAAATGCCACTA | 59.658 | 37.500 | 30.80 | 16.34 | 45.92 | 2.74 |
560 | 564 | 3.133721 | TGGCAGTTTTGTAAAATGCCACT | 59.866 | 39.130 | 30.80 | 6.41 | 45.92 | 4.00 |
645 | 688 | 1.212616 | GATGAGATTCCAGCGAACGG | 58.787 | 55.000 | 0.00 | 0.00 | 0.00 | 4.44 |
663 | 706 | 4.367023 | CGAACGTTCGCTGGGGGA | 62.367 | 66.667 | 34.54 | 0.00 | 44.26 | 4.81 |
704 | 747 | 3.249917 | ACAAACGCAAACCTGTTTTCAG | 58.750 | 40.909 | 0.00 | 0.00 | 46.60 | 3.02 |
705 | 748 | 3.305398 | ACAAACGCAAACCTGTTTTCA | 57.695 | 38.095 | 0.00 | 0.00 | 36.22 | 2.69 |
713 | 756 | 3.246619 | TGTCTCAAAACAAACGCAAACC | 58.753 | 40.909 | 0.00 | 0.00 | 0.00 | 3.27 |
714 | 757 | 4.560819 | TCATGTCTCAAAACAAACGCAAAC | 59.439 | 37.500 | 0.00 | 0.00 | 31.81 | 2.93 |
720 | 763 | 7.810766 | TCTGTTTTCATGTCTCAAAACAAAC | 57.189 | 32.000 | 18.35 | 6.18 | 46.60 | 2.93 |
778 | 3967 | 1.053424 | AGGGCCACGTCTCTGTTTTA | 58.947 | 50.000 | 6.18 | 0.00 | 0.00 | 1.52 |
1115 | 4314 | 2.884685 | CGAGAAGGCAGCGCTGAG | 60.885 | 66.667 | 40.21 | 16.60 | 0.00 | 3.35 |
1188 | 4387 | 1.927644 | GAAACGAGACGAACCGACGC | 61.928 | 60.000 | 0.00 | 0.00 | 36.70 | 5.19 |
1439 | 4638 | 3.354397 | CACAACACAGTCTCGAAAAAGC | 58.646 | 45.455 | 0.00 | 0.00 | 0.00 | 3.51 |
1546 | 4745 | 1.215382 | CTCCACTGCGTCCATTCGA | 59.785 | 57.895 | 0.00 | 0.00 | 0.00 | 3.71 |
1583 | 4782 | 3.901844 | TCTGTATATTCACCTGGTAGCCC | 59.098 | 47.826 | 0.00 | 0.00 | 0.00 | 5.19 |
1707 | 4906 | 8.606602 | GGGAAAATGTGATTTGCAGATAAATTC | 58.393 | 33.333 | 0.00 | 0.00 | 32.86 | 2.17 |
1718 | 4917 | 3.172339 | TCCCCAGGGAAAATGTGATTTG | 58.828 | 45.455 | 7.25 | 0.00 | 42.05 | 2.32 |
1758 | 4961 | 2.549064 | TCAGTTCTGTGGACATGGTG | 57.451 | 50.000 | 0.00 | 0.00 | 0.00 | 4.17 |
1935 | 5199 | 5.416952 | AGCTAAATACTCCATATGCCATTGC | 59.583 | 40.000 | 0.00 | 0.00 | 38.26 | 3.56 |
2044 | 5309 | 5.738909 | AGCTCTATTGCACACTACAATCTT | 58.261 | 37.500 | 0.00 | 0.00 | 38.62 | 2.40 |
2045 | 5310 | 5.350504 | AGCTCTATTGCACACTACAATCT | 57.649 | 39.130 | 0.00 | 0.00 | 38.62 | 2.40 |
2199 | 5749 | 4.322424 | GGCATGGTGTATGGATATGTACGA | 60.322 | 45.833 | 0.00 | 0.00 | 37.26 | 3.43 |
2209 | 5759 | 5.596836 | ATTTTTACAGGCATGGTGTATGG | 57.403 | 39.130 | 2.31 | 0.00 | 37.26 | 2.74 |
2238 | 5788 | 4.993705 | TTTGAGTGGAAGTCCTGGTTAT | 57.006 | 40.909 | 0.00 | 0.00 | 34.62 | 1.89 |
2368 | 5918 | 5.390991 | CCTGTTCTTTTACATCTCGAAAGGC | 60.391 | 44.000 | 0.00 | 0.00 | 32.62 | 4.35 |
2407 | 5957 | 6.992123 | TCTCTTCTTGTTGTTCTATCTGCAAA | 59.008 | 34.615 | 0.00 | 0.00 | 0.00 | 3.68 |
2448 | 5999 | 2.006888 | CCCGAGAAACATAACACGCAT | 58.993 | 47.619 | 0.00 | 0.00 | 0.00 | 4.73 |
2451 | 6002 | 2.373540 | TCCCCGAGAAACATAACACG | 57.626 | 50.000 | 0.00 | 0.00 | 0.00 | 4.49 |
2581 | 6252 | 5.440610 | CCCTTGGTGTTGCTCTAAGAATAT | 58.559 | 41.667 | 0.00 | 0.00 | 0.00 | 1.28 |
2629 | 6300 | 4.760047 | CCGGACTGTTCGCCTGGG | 62.760 | 72.222 | 2.14 | 0.00 | 0.00 | 4.45 |
2632 | 6303 | 2.915659 | TGTCCGGACTGTTCGCCT | 60.916 | 61.111 | 33.39 | 0.00 | 0.00 | 5.52 |
2803 | 6474 | 2.771372 | CCAACCCCAATTTATCCCCAAG | 59.229 | 50.000 | 0.00 | 0.00 | 0.00 | 3.61 |
2816 | 6487 | 3.892162 | CGGTGTTCCCCAACCCCA | 61.892 | 66.667 | 0.00 | 0.00 | 29.55 | 4.96 |
2818 | 6489 | 4.280019 | AGCGGTGTTCCCCAACCC | 62.280 | 66.667 | 0.00 | 0.00 | 0.00 | 4.11 |
2819 | 6490 | 2.983592 | CAGCGGTGTTCCCCAACC | 60.984 | 66.667 | 6.41 | 0.00 | 0.00 | 3.77 |
2820 | 6491 | 2.983592 | CCAGCGGTGTTCCCCAAC | 60.984 | 66.667 | 14.40 | 0.00 | 0.00 | 3.77 |
2821 | 6492 | 3.172106 | TCCAGCGGTGTTCCCCAA | 61.172 | 61.111 | 14.40 | 0.00 | 0.00 | 4.12 |
2822 | 6493 | 3.636231 | CTCCAGCGGTGTTCCCCA | 61.636 | 66.667 | 14.40 | 0.00 | 0.00 | 4.96 |
2834 | 6505 | 1.003696 | GGACTTTGTCTTCCCCTCCAG | 59.996 | 57.143 | 0.00 | 0.00 | 32.47 | 3.86 |
3142 | 6813 | 5.047802 | TGAGAACTTGATTGATCCTTTTGGC | 60.048 | 40.000 | 0.00 | 0.00 | 40.12 | 4.52 |
3429 | 7100 | 2.685388 | TGAAATCGAATGGCGCCAATAA | 59.315 | 40.909 | 36.33 | 19.62 | 40.61 | 1.40 |
3536 | 7207 | 6.314400 | AGCATATTTTTGTTCACATTGATGCC | 59.686 | 34.615 | 0.00 | 0.00 | 37.30 | 4.40 |
3673 | 7344 | 1.984020 | GAGGCCTTTCTCCTTCCGT | 59.016 | 57.895 | 6.77 | 0.00 | 33.24 | 4.69 |
3791 | 7462 | 3.602491 | CGAAGAACGCTGTTTGAACTGAG | 60.602 | 47.826 | 5.13 | 4.36 | 34.72 | 3.35 |
3864 | 7535 | 0.103208 | CCCTCGAGTGTGGTGCTATC | 59.897 | 60.000 | 12.31 | 0.00 | 0.00 | 2.08 |
3959 | 7630 | 5.406767 | AGATTCAGAGTACATCGTCGTAC | 57.593 | 43.478 | 8.48 | 8.48 | 41.75 | 3.67 |
3966 | 7637 | 7.309499 | CCCAGTACCATAGATTCAGAGTACATC | 60.309 | 44.444 | 0.00 | 0.00 | 34.03 | 3.06 |
4043 | 7716 | 4.273148 | AGGTATGTCAAGTCAACTGACC | 57.727 | 45.455 | 6.23 | 0.00 | 45.85 | 4.02 |
4048 | 7721 | 2.415512 | GGCGAAGGTATGTCAAGTCAAC | 59.584 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
4112 | 7785 | 0.251787 | ACTGGGCCTTTCCAATGGTC | 60.252 | 55.000 | 4.53 | 0.00 | 36.21 | 4.02 |
4533 | 8209 | 2.761213 | GCAAAGGGGGAGCATGGG | 60.761 | 66.667 | 0.00 | 0.00 | 0.00 | 4.00 |
4534 | 8210 | 0.906282 | AAAGCAAAGGGGGAGCATGG | 60.906 | 55.000 | 0.00 | 0.00 | 0.00 | 3.66 |
4535 | 8211 | 0.533951 | GAAAGCAAAGGGGGAGCATG | 59.466 | 55.000 | 0.00 | 0.00 | 0.00 | 4.06 |
4536 | 8212 | 0.114954 | TGAAAGCAAAGGGGGAGCAT | 59.885 | 50.000 | 0.00 | 0.00 | 0.00 | 3.79 |
4537 | 8213 | 0.114954 | ATGAAAGCAAAGGGGGAGCA | 59.885 | 50.000 | 0.00 | 0.00 | 0.00 | 4.26 |
4538 | 8214 | 0.820226 | GATGAAAGCAAAGGGGGAGC | 59.180 | 55.000 | 0.00 | 0.00 | 0.00 | 4.70 |
4539 | 8215 | 2.097825 | CAGATGAAAGCAAAGGGGGAG | 58.902 | 52.381 | 0.00 | 0.00 | 0.00 | 4.30 |
4540 | 8216 | 1.892329 | GCAGATGAAAGCAAAGGGGGA | 60.892 | 52.381 | 0.00 | 0.00 | 0.00 | 4.81 |
4541 | 8217 | 0.533951 | GCAGATGAAAGCAAAGGGGG | 59.466 | 55.000 | 0.00 | 0.00 | 0.00 | 5.40 |
4542 | 8218 | 1.067354 | GTGCAGATGAAAGCAAAGGGG | 60.067 | 52.381 | 0.00 | 0.00 | 43.20 | 4.79 |
4543 | 8219 | 1.067354 | GGTGCAGATGAAAGCAAAGGG | 60.067 | 52.381 | 0.00 | 0.00 | 43.20 | 3.95 |
4544 | 8220 | 1.067354 | GGGTGCAGATGAAAGCAAAGG | 60.067 | 52.381 | 0.00 | 0.00 | 43.20 | 3.11 |
4545 | 8221 | 1.891150 | AGGGTGCAGATGAAAGCAAAG | 59.109 | 47.619 | 0.00 | 0.00 | 43.20 | 2.77 |
4546 | 8222 | 1.999648 | AGGGTGCAGATGAAAGCAAA | 58.000 | 45.000 | 0.00 | 0.00 | 43.20 | 3.68 |
4547 | 8223 | 1.888512 | GAAGGGTGCAGATGAAAGCAA | 59.111 | 47.619 | 0.00 | 0.00 | 43.20 | 3.91 |
4548 | 8224 | 1.538047 | GAAGGGTGCAGATGAAAGCA | 58.462 | 50.000 | 0.00 | 0.00 | 38.65 | 3.91 |
4549 | 8225 | 0.449388 | CGAAGGGTGCAGATGAAAGC | 59.551 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
4550 | 8226 | 1.466167 | CACGAAGGGTGCAGATGAAAG | 59.534 | 52.381 | 0.00 | 0.00 | 40.33 | 2.62 |
4551 | 8227 | 1.522668 | CACGAAGGGTGCAGATGAAA | 58.477 | 50.000 | 0.00 | 0.00 | 40.33 | 2.69 |
4552 | 8228 | 3.231734 | CACGAAGGGTGCAGATGAA | 57.768 | 52.632 | 0.00 | 0.00 | 40.33 | 2.57 |
4561 | 8237 | 1.678598 | TTGTCACGGACACGAAGGGT | 61.679 | 55.000 | 6.27 | 0.00 | 42.60 | 4.34 |
4562 | 8238 | 0.320421 | ATTGTCACGGACACGAAGGG | 60.320 | 55.000 | 6.27 | 0.00 | 42.60 | 3.95 |
4563 | 8239 | 0.790207 | CATTGTCACGGACACGAAGG | 59.210 | 55.000 | 6.27 | 0.00 | 42.60 | 3.46 |
4564 | 8240 | 1.778334 | TCATTGTCACGGACACGAAG | 58.222 | 50.000 | 6.27 | 0.00 | 42.60 | 3.79 |
4565 | 8241 | 2.288518 | TGATCATTGTCACGGACACGAA | 60.289 | 45.455 | 6.27 | 0.00 | 42.60 | 3.85 |
4566 | 8242 | 1.271102 | TGATCATTGTCACGGACACGA | 59.729 | 47.619 | 6.27 | 6.91 | 42.60 | 4.35 |
4567 | 8243 | 1.390123 | GTGATCATTGTCACGGACACG | 59.610 | 52.381 | 0.00 | 2.41 | 42.60 | 4.49 |
4574 | 8250 | 8.728337 | ATGCCTATATATGTGATCATTGTCAC | 57.272 | 34.615 | 0.00 | 10.55 | 46.75 | 3.67 |
4575 | 8251 | 8.542080 | TGATGCCTATATATGTGATCATTGTCA | 58.458 | 33.333 | 0.00 | 0.00 | 35.70 | 3.58 |
4576 | 8252 | 8.824781 | GTGATGCCTATATATGTGATCATTGTC | 58.175 | 37.037 | 0.00 | 0.00 | 35.70 | 3.18 |
4577 | 8253 | 7.493645 | CGTGATGCCTATATATGTGATCATTGT | 59.506 | 37.037 | 0.00 | 0.00 | 35.70 | 2.71 |
4578 | 8254 | 7.493645 | ACGTGATGCCTATATATGTGATCATTG | 59.506 | 37.037 | 0.00 | 0.00 | 35.70 | 2.82 |
4579 | 8255 | 7.559486 | ACGTGATGCCTATATATGTGATCATT | 58.441 | 34.615 | 0.00 | 0.00 | 35.70 | 2.57 |
4580 | 8256 | 7.117285 | ACGTGATGCCTATATATGTGATCAT | 57.883 | 36.000 | 0.00 | 0.00 | 38.00 | 2.45 |
4581 | 8257 | 6.405842 | GGACGTGATGCCTATATATGTGATCA | 60.406 | 42.308 | 0.00 | 0.00 | 0.00 | 2.92 |
4582 | 8258 | 5.980116 | GGACGTGATGCCTATATATGTGATC | 59.020 | 44.000 | 0.00 | 0.00 | 0.00 | 2.92 |
4583 | 8259 | 5.450550 | CGGACGTGATGCCTATATATGTGAT | 60.451 | 44.000 | 0.00 | 0.00 | 0.00 | 3.06 |
4584 | 8260 | 4.142469 | CGGACGTGATGCCTATATATGTGA | 60.142 | 45.833 | 0.00 | 0.00 | 0.00 | 3.58 |
4585 | 8261 | 4.105486 | CGGACGTGATGCCTATATATGTG | 58.895 | 47.826 | 0.00 | 0.00 | 0.00 | 3.21 |
4586 | 8262 | 3.762288 | ACGGACGTGATGCCTATATATGT | 59.238 | 43.478 | 0.00 | 0.00 | 0.00 | 2.29 |
4587 | 8263 | 4.371855 | ACGGACGTGATGCCTATATATG | 57.628 | 45.455 | 0.00 | 0.00 | 0.00 | 1.78 |
4600 | 8276 | 1.665161 | GGTCTACTTGTCACGGACGTG | 60.665 | 57.143 | 17.97 | 17.97 | 46.64 | 4.49 |
4601 | 8277 | 0.595095 | GGTCTACTTGTCACGGACGT | 59.405 | 55.000 | 0.00 | 0.00 | 34.95 | 4.34 |
4602 | 8278 | 0.453950 | CGGTCTACTTGTCACGGACG | 60.454 | 60.000 | 0.00 | 0.00 | 34.95 | 4.79 |
4603 | 8279 | 0.877071 | TCGGTCTACTTGTCACGGAC | 59.123 | 55.000 | 0.00 | 0.00 | 0.00 | 4.79 |
4604 | 8280 | 0.877071 | GTCGGTCTACTTGTCACGGA | 59.123 | 55.000 | 0.00 | 0.00 | 0.00 | 4.69 |
4605 | 8281 | 0.879765 | AGTCGGTCTACTTGTCACGG | 59.120 | 55.000 | 0.00 | 0.00 | 0.00 | 4.94 |
4606 | 8282 | 1.135746 | GGAGTCGGTCTACTTGTCACG | 60.136 | 57.143 | 0.00 | 0.00 | 0.00 | 4.35 |
4607 | 8283 | 2.095161 | CAGGAGTCGGTCTACTTGTCAC | 60.095 | 54.545 | 0.00 | 0.00 | 34.61 | 3.67 |
4608 | 8284 | 2.160205 | CAGGAGTCGGTCTACTTGTCA | 58.840 | 52.381 | 0.00 | 0.00 | 34.61 | 3.58 |
4609 | 8285 | 2.161030 | ACAGGAGTCGGTCTACTTGTC | 58.839 | 52.381 | 0.00 | 0.00 | 34.61 | 3.18 |
4610 | 8286 | 2.161030 | GACAGGAGTCGGTCTACTTGT | 58.839 | 52.381 | 6.38 | 0.00 | 34.61 | 3.16 |
4611 | 8287 | 2.923605 | GACAGGAGTCGGTCTACTTG | 57.076 | 55.000 | 6.38 | 0.00 | 34.61 | 3.16 |
4621 | 8297 | 2.103373 | TGGTAGATGCAGACAGGAGTC | 58.897 | 52.381 | 0.00 | 0.00 | 45.31 | 3.36 |
4622 | 8298 | 1.827969 | GTGGTAGATGCAGACAGGAGT | 59.172 | 52.381 | 0.00 | 0.00 | 0.00 | 3.85 |
4623 | 8299 | 2.106566 | AGTGGTAGATGCAGACAGGAG | 58.893 | 52.381 | 0.00 | 0.00 | 0.00 | 3.69 |
4624 | 8300 | 2.238084 | AGTGGTAGATGCAGACAGGA | 57.762 | 50.000 | 0.00 | 0.00 | 0.00 | 3.86 |
4625 | 8301 | 4.679373 | AATAGTGGTAGATGCAGACAGG | 57.321 | 45.455 | 0.00 | 0.00 | 0.00 | 4.00 |
4626 | 8302 | 6.398234 | AGTAATAGTGGTAGATGCAGACAG | 57.602 | 41.667 | 0.00 | 0.00 | 0.00 | 3.51 |
4627 | 8303 | 5.008712 | CGAGTAATAGTGGTAGATGCAGACA | 59.991 | 44.000 | 0.00 | 0.00 | 0.00 | 3.41 |
4628 | 8304 | 5.238868 | TCGAGTAATAGTGGTAGATGCAGAC | 59.761 | 44.000 | 0.00 | 0.00 | 0.00 | 3.51 |
4629 | 8305 | 5.238868 | GTCGAGTAATAGTGGTAGATGCAGA | 59.761 | 44.000 | 0.00 | 0.00 | 0.00 | 4.26 |
4630 | 8306 | 5.453648 | GTCGAGTAATAGTGGTAGATGCAG | 58.546 | 45.833 | 0.00 | 0.00 | 0.00 | 4.41 |
4631 | 8307 | 4.277672 | GGTCGAGTAATAGTGGTAGATGCA | 59.722 | 45.833 | 0.00 | 0.00 | 0.00 | 3.96 |
4632 | 8308 | 4.277672 | TGGTCGAGTAATAGTGGTAGATGC | 59.722 | 45.833 | 0.00 | 0.00 | 0.00 | 3.91 |
4633 | 8309 | 6.387041 | TTGGTCGAGTAATAGTGGTAGATG | 57.613 | 41.667 | 0.00 | 0.00 | 0.00 | 2.90 |
4634 | 8310 | 7.005296 | AGATTGGTCGAGTAATAGTGGTAGAT | 58.995 | 38.462 | 0.00 | 0.00 | 0.00 | 1.98 |
4635 | 8311 | 6.363065 | AGATTGGTCGAGTAATAGTGGTAGA | 58.637 | 40.000 | 0.00 | 0.00 | 0.00 | 2.59 |
4636 | 8312 | 6.636562 | AGATTGGTCGAGTAATAGTGGTAG | 57.363 | 41.667 | 0.00 | 0.00 | 0.00 | 3.18 |
4637 | 8313 | 6.488006 | GGTAGATTGGTCGAGTAATAGTGGTA | 59.512 | 42.308 | 0.00 | 0.00 | 0.00 | 3.25 |
4638 | 8314 | 5.301298 | GGTAGATTGGTCGAGTAATAGTGGT | 59.699 | 44.000 | 0.00 | 0.00 | 0.00 | 4.16 |
4639 | 8315 | 5.562307 | CGGTAGATTGGTCGAGTAATAGTGG | 60.562 | 48.000 | 0.00 | 0.00 | 0.00 | 4.00 |
4640 | 8316 | 5.450171 | CGGTAGATTGGTCGAGTAATAGTG | 58.550 | 45.833 | 0.00 | 0.00 | 0.00 | 2.74 |
4641 | 8317 | 4.023365 | GCGGTAGATTGGTCGAGTAATAGT | 60.023 | 45.833 | 0.00 | 0.00 | 0.00 | 2.12 |
4642 | 8318 | 4.215827 | AGCGGTAGATTGGTCGAGTAATAG | 59.784 | 45.833 | 0.00 | 0.00 | 0.00 | 1.73 |
4643 | 8319 | 4.139786 | AGCGGTAGATTGGTCGAGTAATA | 58.860 | 43.478 | 0.00 | 0.00 | 0.00 | 0.98 |
4644 | 8320 | 2.957006 | AGCGGTAGATTGGTCGAGTAAT | 59.043 | 45.455 | 0.00 | 0.00 | 0.00 | 1.89 |
4645 | 8321 | 2.372264 | AGCGGTAGATTGGTCGAGTAA | 58.628 | 47.619 | 0.00 | 0.00 | 0.00 | 2.24 |
4646 | 8322 | 2.048444 | AGCGGTAGATTGGTCGAGTA | 57.952 | 50.000 | 0.00 | 0.00 | 0.00 | 2.59 |
4647 | 8323 | 2.048444 | TAGCGGTAGATTGGTCGAGT | 57.952 | 50.000 | 0.00 | 0.00 | 0.00 | 4.18 |
4648 | 8324 | 2.095161 | GGATAGCGGTAGATTGGTCGAG | 60.095 | 54.545 | 0.00 | 0.00 | 0.00 | 4.04 |
4649 | 8325 | 1.884579 | GGATAGCGGTAGATTGGTCGA | 59.115 | 52.381 | 0.00 | 0.00 | 0.00 | 4.20 |
4650 | 8326 | 1.611977 | TGGATAGCGGTAGATTGGTCG | 59.388 | 52.381 | 0.00 | 0.00 | 0.00 | 4.79 |
4651 | 8327 | 3.181469 | TGTTGGATAGCGGTAGATTGGTC | 60.181 | 47.826 | 0.00 | 0.00 | 0.00 | 4.02 |
4652 | 8328 | 2.769663 | TGTTGGATAGCGGTAGATTGGT | 59.230 | 45.455 | 0.00 | 0.00 | 0.00 | 3.67 |
4653 | 8329 | 3.469008 | TGTTGGATAGCGGTAGATTGG | 57.531 | 47.619 | 0.00 | 0.00 | 0.00 | 3.16 |
4654 | 8330 | 3.187227 | GCATGTTGGATAGCGGTAGATTG | 59.813 | 47.826 | 0.00 | 0.00 | 0.00 | 2.67 |
4655 | 8331 | 3.181455 | TGCATGTTGGATAGCGGTAGATT | 60.181 | 43.478 | 0.00 | 0.00 | 0.00 | 2.40 |
4656 | 8332 | 2.368548 | TGCATGTTGGATAGCGGTAGAT | 59.631 | 45.455 | 0.00 | 0.00 | 0.00 | 1.98 |
4657 | 8333 | 1.760029 | TGCATGTTGGATAGCGGTAGA | 59.240 | 47.619 | 0.00 | 0.00 | 0.00 | 2.59 |
4658 | 8334 | 2.238942 | TGCATGTTGGATAGCGGTAG | 57.761 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
4659 | 8335 | 2.368548 | AGATGCATGTTGGATAGCGGTA | 59.631 | 45.455 | 2.46 | 0.00 | 0.00 | 4.02 |
4660 | 8336 | 1.141657 | AGATGCATGTTGGATAGCGGT | 59.858 | 47.619 | 2.46 | 0.00 | 0.00 | 5.68 |
4661 | 8337 | 1.888215 | AGATGCATGTTGGATAGCGG | 58.112 | 50.000 | 2.46 | 0.00 | 0.00 | 5.52 |
4662 | 8338 | 4.248058 | TCATAGATGCATGTTGGATAGCG | 58.752 | 43.478 | 2.46 | 0.00 | 0.00 | 4.26 |
4663 | 8339 | 7.046652 | AGTATCATAGATGCATGTTGGATAGC | 58.953 | 38.462 | 2.46 | 6.46 | 0.00 | 2.97 |
4666 | 8342 | 8.600668 | ACTTAGTATCATAGATGCATGTTGGAT | 58.399 | 33.333 | 2.46 | 9.40 | 0.00 | 3.41 |
4667 | 8343 | 7.966812 | ACTTAGTATCATAGATGCATGTTGGA | 58.033 | 34.615 | 2.46 | 1.28 | 0.00 | 3.53 |
4668 | 8344 | 8.613060 | AACTTAGTATCATAGATGCATGTTGG | 57.387 | 34.615 | 2.46 | 0.00 | 0.00 | 3.77 |
4669 | 8345 | 9.264719 | TGAACTTAGTATCATAGATGCATGTTG | 57.735 | 33.333 | 2.46 | 1.69 | 0.00 | 3.33 |
4671 | 8347 | 9.433153 | CATGAACTTAGTATCATAGATGCATGT | 57.567 | 33.333 | 2.46 | 1.37 | 34.61 | 3.21 |
4672 | 8348 | 9.649167 | TCATGAACTTAGTATCATAGATGCATG | 57.351 | 33.333 | 2.46 | 0.00 | 34.61 | 4.06 |
4686 | 8362 | 9.355215 | CGTTACTCTGTTTATCATGAACTTAGT | 57.645 | 33.333 | 0.00 | 4.58 | 31.97 | 2.24 |
4687 | 8363 | 9.355215 | ACGTTACTCTGTTTATCATGAACTTAG | 57.645 | 33.333 | 0.00 | 0.00 | 0.00 | 2.18 |
4688 | 8364 | 9.701098 | AACGTTACTCTGTTTATCATGAACTTA | 57.299 | 29.630 | 0.00 | 0.00 | 0.00 | 2.24 |
4689 | 8365 | 8.603242 | AACGTTACTCTGTTTATCATGAACTT | 57.397 | 30.769 | 0.00 | 0.00 | 0.00 | 2.66 |
4690 | 8366 | 8.603242 | AAACGTTACTCTGTTTATCATGAACT | 57.397 | 30.769 | 0.00 | 0.00 | 36.59 | 3.01 |
4694 | 8370 | 9.262472 | GCTTAAAACGTTACTCTGTTTATCATG | 57.738 | 33.333 | 0.00 | 0.00 | 37.31 | 3.07 |
4695 | 8371 | 8.995220 | TGCTTAAAACGTTACTCTGTTTATCAT | 58.005 | 29.630 | 0.00 | 0.00 | 37.31 | 2.45 |
4696 | 8372 | 8.367943 | TGCTTAAAACGTTACTCTGTTTATCA | 57.632 | 30.769 | 0.00 | 0.00 | 37.31 | 2.15 |
4697 | 8373 | 9.314501 | CTTGCTTAAAACGTTACTCTGTTTATC | 57.685 | 33.333 | 0.00 | 0.00 | 37.31 | 1.75 |
4698 | 8374 | 9.048446 | TCTTGCTTAAAACGTTACTCTGTTTAT | 57.952 | 29.630 | 0.00 | 0.00 | 37.31 | 1.40 |
4699 | 8375 | 8.422973 | TCTTGCTTAAAACGTTACTCTGTTTA | 57.577 | 30.769 | 0.00 | 0.00 | 37.31 | 2.01 |
4700 | 8376 | 7.311364 | TCTTGCTTAAAACGTTACTCTGTTT | 57.689 | 32.000 | 0.00 | 0.00 | 39.84 | 2.83 |
4701 | 8377 | 6.913873 | TCTTGCTTAAAACGTTACTCTGTT | 57.086 | 33.333 | 0.00 | 0.00 | 0.00 | 3.16 |
4702 | 8378 | 6.704493 | TCATCTTGCTTAAAACGTTACTCTGT | 59.296 | 34.615 | 0.00 | 0.00 | 0.00 | 3.41 |
4703 | 8379 | 7.010023 | GTCATCTTGCTTAAAACGTTACTCTG | 58.990 | 38.462 | 0.00 | 0.00 | 0.00 | 3.35 |
4704 | 8380 | 6.704493 | TGTCATCTTGCTTAAAACGTTACTCT | 59.296 | 34.615 | 0.00 | 0.00 | 0.00 | 3.24 |
4705 | 8381 | 6.884187 | TGTCATCTTGCTTAAAACGTTACTC | 58.116 | 36.000 | 0.00 | 0.00 | 0.00 | 2.59 |
4706 | 8382 | 6.854496 | TGTCATCTTGCTTAAAACGTTACT | 57.146 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
4707 | 8383 | 7.295201 | TCATGTCATCTTGCTTAAAACGTTAC | 58.705 | 34.615 | 0.00 | 0.00 | 0.00 | 2.50 |
4708 | 8384 | 7.428282 | TCATGTCATCTTGCTTAAAACGTTA | 57.572 | 32.000 | 0.00 | 0.00 | 0.00 | 3.18 |
4709 | 8385 | 6.312399 | TCATGTCATCTTGCTTAAAACGTT | 57.688 | 33.333 | 0.00 | 0.00 | 0.00 | 3.99 |
4710 | 8386 | 5.940192 | TCATGTCATCTTGCTTAAAACGT | 57.060 | 34.783 | 0.00 | 0.00 | 0.00 | 3.99 |
4711 | 8387 | 6.317088 | ACATCATGTCATCTTGCTTAAAACG | 58.683 | 36.000 | 0.00 | 0.00 | 0.00 | 3.60 |
4712 | 8388 | 8.668353 | TCTACATCATGTCATCTTGCTTAAAAC | 58.332 | 33.333 | 0.00 | 0.00 | 0.00 | 2.43 |
4713 | 8389 | 8.791327 | TCTACATCATGTCATCTTGCTTAAAA | 57.209 | 30.769 | 0.00 | 0.00 | 0.00 | 1.52 |
4714 | 8390 | 8.043113 | ACTCTACATCATGTCATCTTGCTTAAA | 58.957 | 33.333 | 0.00 | 0.00 | 0.00 | 1.52 |
4715 | 8391 | 7.559486 | ACTCTACATCATGTCATCTTGCTTAA | 58.441 | 34.615 | 0.00 | 0.00 | 0.00 | 1.85 |
4716 | 8392 | 7.117285 | ACTCTACATCATGTCATCTTGCTTA | 57.883 | 36.000 | 0.00 | 0.00 | 0.00 | 3.09 |
4717 | 8393 | 5.987098 | ACTCTACATCATGTCATCTTGCTT | 58.013 | 37.500 | 0.00 | 0.00 | 0.00 | 3.91 |
4718 | 8394 | 5.611128 | ACTCTACATCATGTCATCTTGCT | 57.389 | 39.130 | 0.00 | 0.00 | 0.00 | 3.91 |
4719 | 8395 | 5.583854 | ACAACTCTACATCATGTCATCTTGC | 59.416 | 40.000 | 0.00 | 0.00 | 0.00 | 4.01 |
4720 | 8396 | 8.193438 | TCTACAACTCTACATCATGTCATCTTG | 58.807 | 37.037 | 0.00 | 0.00 | 0.00 | 3.02 |
4721 | 8397 | 8.194104 | GTCTACAACTCTACATCATGTCATCTT | 58.806 | 37.037 | 0.00 | 0.00 | 0.00 | 2.40 |
4722 | 8398 | 7.340487 | TGTCTACAACTCTACATCATGTCATCT | 59.660 | 37.037 | 0.00 | 0.00 | 0.00 | 2.90 |
4723 | 8399 | 7.484140 | TGTCTACAACTCTACATCATGTCATC | 58.516 | 38.462 | 0.00 | 0.00 | 0.00 | 2.92 |
4724 | 8400 | 7.410120 | TGTCTACAACTCTACATCATGTCAT | 57.590 | 36.000 | 0.00 | 0.00 | 0.00 | 3.06 |
4725 | 8401 | 6.834168 | TGTCTACAACTCTACATCATGTCA | 57.166 | 37.500 | 0.00 | 0.00 | 0.00 | 3.58 |
4726 | 8402 | 7.815068 | ACTTTGTCTACAACTCTACATCATGTC | 59.185 | 37.037 | 0.00 | 0.00 | 35.28 | 3.06 |
4727 | 8403 | 7.671302 | ACTTTGTCTACAACTCTACATCATGT | 58.329 | 34.615 | 0.00 | 0.00 | 35.28 | 3.21 |
4728 | 8404 | 9.639601 | TTACTTTGTCTACAACTCTACATCATG | 57.360 | 33.333 | 0.00 | 0.00 | 35.28 | 3.07 |
4730 | 8406 | 9.472361 | GTTTACTTTGTCTACAACTCTACATCA | 57.528 | 33.333 | 0.00 | 0.00 | 35.28 | 3.07 |
4731 | 8407 | 9.694137 | AGTTTACTTTGTCTACAACTCTACATC | 57.306 | 33.333 | 0.00 | 0.00 | 35.28 | 3.06 |
4732 | 8408 | 9.694137 | GAGTTTACTTTGTCTACAACTCTACAT | 57.306 | 33.333 | 0.00 | 0.00 | 37.97 | 2.29 |
4733 | 8409 | 8.689061 | TGAGTTTACTTTGTCTACAACTCTACA | 58.311 | 33.333 | 10.35 | 0.00 | 40.45 | 2.74 |
4734 | 8410 | 9.525409 | TTGAGTTTACTTTGTCTACAACTCTAC | 57.475 | 33.333 | 10.35 | 1.34 | 40.45 | 2.59 |
4735 | 8411 | 9.745880 | CTTGAGTTTACTTTGTCTACAACTCTA | 57.254 | 33.333 | 10.35 | 3.46 | 40.45 | 2.43 |
4736 | 8412 | 7.224949 | GCTTGAGTTTACTTTGTCTACAACTCT | 59.775 | 37.037 | 10.35 | 0.00 | 40.45 | 3.24 |
4737 | 8413 | 7.011109 | TGCTTGAGTTTACTTTGTCTACAACTC | 59.989 | 37.037 | 0.00 | 0.00 | 40.29 | 3.01 |
4738 | 8414 | 6.821665 | TGCTTGAGTTTACTTTGTCTACAACT | 59.178 | 34.615 | 0.00 | 0.00 | 35.28 | 3.16 |
4739 | 8415 | 7.011828 | TGCTTGAGTTTACTTTGTCTACAAC | 57.988 | 36.000 | 0.00 | 0.00 | 35.28 | 3.32 |
4740 | 8416 | 7.618502 | TTGCTTGAGTTTACTTTGTCTACAA | 57.381 | 32.000 | 0.00 | 0.00 | 0.00 | 2.41 |
4741 | 8417 | 7.801716 | ATTGCTTGAGTTTACTTTGTCTACA | 57.198 | 32.000 | 0.00 | 0.00 | 0.00 | 2.74 |
4742 | 8418 | 9.760660 | CATATTGCTTGAGTTTACTTTGTCTAC | 57.239 | 33.333 | 0.00 | 0.00 | 0.00 | 2.59 |
4743 | 8419 | 9.719355 | TCATATTGCTTGAGTTTACTTTGTCTA | 57.281 | 29.630 | 0.00 | 0.00 | 0.00 | 2.59 |
4744 | 8420 | 8.621532 | TCATATTGCTTGAGTTTACTTTGTCT | 57.378 | 30.769 | 0.00 | 0.00 | 0.00 | 3.41 |
4745 | 8421 | 9.846248 | AATCATATTGCTTGAGTTTACTTTGTC | 57.154 | 29.630 | 0.00 | 0.00 | 0.00 | 3.18 |
4751 | 8427 | 9.516314 | GGGTTTAATCATATTGCTTGAGTTTAC | 57.484 | 33.333 | 0.00 | 0.00 | 0.00 | 2.01 |
4752 | 8428 | 9.474313 | AGGGTTTAATCATATTGCTTGAGTTTA | 57.526 | 29.630 | 0.00 | 0.00 | 0.00 | 2.01 |
4753 | 8429 | 8.253113 | CAGGGTTTAATCATATTGCTTGAGTTT | 58.747 | 33.333 | 0.00 | 0.00 | 0.00 | 2.66 |
4754 | 8430 | 7.397192 | ACAGGGTTTAATCATATTGCTTGAGTT | 59.603 | 33.333 | 0.00 | 0.00 | 0.00 | 3.01 |
4755 | 8431 | 6.891908 | ACAGGGTTTAATCATATTGCTTGAGT | 59.108 | 34.615 | 0.00 | 0.00 | 0.00 | 3.41 |
4756 | 8432 | 7.067372 | TGACAGGGTTTAATCATATTGCTTGAG | 59.933 | 37.037 | 0.00 | 0.00 | 0.00 | 3.02 |
4757 | 8433 | 6.889177 | TGACAGGGTTTAATCATATTGCTTGA | 59.111 | 34.615 | 0.00 | 0.00 | 0.00 | 3.02 |
4758 | 8434 | 7.099266 | TGACAGGGTTTAATCATATTGCTTG | 57.901 | 36.000 | 0.00 | 0.00 | 0.00 | 4.01 |
4759 | 8435 | 7.902920 | ATGACAGGGTTTAATCATATTGCTT | 57.097 | 32.000 | 0.00 | 0.00 | 30.01 | 3.91 |
4760 | 8436 | 7.902920 | AATGACAGGGTTTAATCATATTGCT | 57.097 | 32.000 | 0.00 | 0.00 | 31.56 | 3.91 |
4761 | 8437 | 8.947055 | AAAATGACAGGGTTTAATCATATTGC | 57.053 | 30.769 | 0.00 | 0.00 | 31.56 | 3.56 |
4766 | 8442 | 9.492730 | AAGGATAAAATGACAGGGTTTAATCAT | 57.507 | 29.630 | 0.00 | 0.00 | 33.18 | 2.45 |
4767 | 8443 | 8.893563 | AAGGATAAAATGACAGGGTTTAATCA | 57.106 | 30.769 | 0.00 | 0.00 | 0.00 | 2.57 |
4771 | 8447 | 9.983024 | TCATTAAGGATAAAATGACAGGGTTTA | 57.017 | 29.630 | 0.00 | 0.00 | 37.23 | 2.01 |
4772 | 8448 | 8.893563 | TCATTAAGGATAAAATGACAGGGTTT | 57.106 | 30.769 | 0.00 | 0.00 | 37.23 | 3.27 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.